PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_124
Name: AtHB23; ATHB13; ATHB20; ATHB5
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_13	HAT5	Not Available	69.20%
Motif_87	AGL22; AGL20; AGL24	Regulation of floral patterning by flowering time genes	67.23%
Matrix_441	ATHB5	Not Available	66.93%
Matrix_353	HAT5	Not Available	66.26%
Matrix_435	ATHB51	Not Available	64.72%
Motif_352	ATHB5 binding site motif	Consensus binding sequence for Arabidopsis class I HDzip (Homeodomein-leucine zipper) protein, ATHB5; ATHB5 protein forms dimers in solution; ATHB5 and ATHB6 exhibit identical DNA binding specificities; ATHB5 forms heterodimers with other class I HDzip proteins; DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro	63.70%
Motif_277	ATHB1 binding site motif	Recognition sequence of Arabidopsis Athb-1 protein; Athb-1 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); HD-Zip domain binds to DNA as a dimer; The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	62.90%
Motif_169	ATHB2 binding site motif	Recognition sequence of Arabidopsis Athb-2 protein; Athb-2 protein has a HD-Zip motif (homeodomain (HD) with a closely linked leucine zipper motif (Zip)); The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	61.89%
Matrix_71	ATHB7	Not Available	60.36%
Matrix_461	ATHB12	Not Available	60.35%
Matrix_302	HAT1; HAT2	Not Available	60.05%
Matrix_103	ATHB1	The Athb-1 and -2 HD-Zip domains homodimerize forming complexes of different DNA binding specificities	59.36%
Motif_294	HSRENTHSR203J	HSRE(HSR203 responsive element) in tobacco responsible for the marked induction of the HSR203J gene during the HR (hypersensitive response); HSR203J is specifically activated during the early steps of incompatible plant/pathogen interactions	59.34%
Motif_23	14BPATERD1	14 bp region (from -599 to -566) necessary for expression of erd1 (early responsive to dehydration) in dehydrated Arabidopsis	57.51%
Matrix_62	HAT5	Not Available	57.08%
Matrix_81	YAB1	Not Available	57.03%
Motif_624	ATHB6 binding site motif	Consensus binding sequence for Arabidopsis homeodomain-leucine zipper protein, ATHB6; ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses; Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis	56.81%
Matrix_182	ATHB6	Not Available	56.32%
Motif_147	HDMOTIFPCPR2	HD (homeodomain) protein target site in parsley pathogenesis-related protein 2 (PR2); A potential in vivo target site	55.93%
Motif_298	GMHDLGMVSPB	Binding site of the soybean homeodomein leucine zipper proteins (GmHdl56, GmHdl57); Found in the phosphate response domain of the soybean VspB promoter; Located between -536 and -527; VspB encodes vacuolar glycoprotein acid phosphatase that serve as vegetative storage protein	55.50%
Matrix_351	HAT9; ATHB-4; ATHB2; HAT22; HAT14	Not Available	55.37%
Matrix_93	YAB5	Not Available	54.93%
Motif_285	HDZIP2ATATHB2	Binding site of the Arabidopsis homeobox gene (ATHB-2) found in its own promoter; Located between -72 and -80; Similar to the HD-ZIP-2 binding consensus sequence; ATHB-2 is regulated by light signals which function as a negative autoregulator of its own gene	54.57%
Matrix_471	KAN4	Not Available	54.43%
Matrix_53	MYC3	Not Available	54.40%
Matrix_181	Dof5.7	Not Available	54.38%
Matrix_132	SOC1	Not Available	54.29%
Matrix_213	ATHB22	Not Available	54.16%
Motif_45	AGL25; SOC1	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis;Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	54.12%
Matrix_495	HD-GL2-1; ANL2	Not Available	53.97%
Matrix_285	DDF1	Not Available	53.94%
Matrix_204	WOX13	Not Available	53.60%
Matrix_89	SOC1	Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	53.44%
Matrix_240	AT4G29000	Not Available	53.23%
Matrix_333	GATA3	Not Available	53.04%
Matrix_318	ATHB16	Not Available	52.96%
Matrix_131	HDG12; EDT1; GL2; HDG8	Not Available	52.94%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	52.57%
Matrix_72	CDF2	Not Available	52.35%
Motif_415	RBCSGBOXPS	rbcS G-box; 5'upstream region (-211) of pea rbcS gene; binding with trans factor GBF (CG-1); Light-responsiveness	52.19%
Matrix_499	ARR18	Not Available	52.11%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	52.11%
Matrix_467	RAV1	Not Available	52.11%
Matrix_477	RAV1	Not Available	52.11%
Matrix_217	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	52.05%
Matrix_231	HDG2; HDG3; ATML1; HB-7	Not Available	51.88%
Matrix_143	GATA14; GATA6; GATA5	Not Available	51.69%
Matrix_141	AT3G25990	Not Available	51.46%
Matrix_501	DAG2	Not Available	51.46%
Matrix_255	cdf3	Not Available	51.41%
Motif_187	AT1BOX	AT-1 box (AT-rich element) found in the promoter region of the genes for tobacco chlorophyll a/b binding protein (cab) and small subunit of ribulose-1,5-bisphosphate carboxylase (rbcS); Deletion of a region containing the AT-1 site in the tomato RBCS3A gene strongly inhibited reporter gene expression, whereas AT-1 site in N. plumbaginifolia CAB gene (cab-E) is in a negative element	51.39%
Matrix_29	AP1	Not Available	51.35%
Matrix_447	RVE1	Not Available	51.34%
Matrix_236	CCA1	Not Available	51.33%
Matrix_70	GATA26	Not Available	51.32%
Motif_83	CIACADIANLELHC	Region necessary for circadian expression of tomato Lhc gene	51.28%
Matrix_489	RAV1	Not Available	51.23%
Matrix_226	GATA1	Not Available	51.16%
Matrix_203	GATA9; GATA12	Not Available	51.12%
Matrix_136	SEP3	Not Available	51.09%
Motif_449	AGL25; SVP	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis. Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	51.00%
Matrix_403	BZR1	Not Available	50.85%
Matrix_227	AT1G64620	Not Available	50.83%
Matrix_229	CDC5	A cdc5+ homolog of a higher plant, Arabidopsis thaliana	50.70%
Matrix_391	AHL20	Not Available	50.69%
Matrix_520	ARR14	Not Available	50.69%
Matrix_514	DYT1	Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development	50.61%
Matrix_366	ARR14	Not Available	50.43%
Matrix_171	LBD3; LBD4	Not Available	50.18%
Matrix_434	ARR11	Not Available	50.13%
Motif_345	GT-1	Molecular dissection of GT-1 from Arabidopsis	50.09%
Matrix_413	RAV1	Not Available	50.03%
Matrix_298	RAV1	Not Available	50.03%