At5g55300.1 68412.m06236 DNA topoisomerase I (sp P30181)
Matching miRNAs:
| miRNA name | IGR name | mature miRNA sequence | Targets | Rfam | |
|---|---|---|---|---|---|
| 1 | prec1402 | igr140#chr1#x1=582220#l=2039_509+594 | CTTCATCTTCATCATCATCAG | 76 | |
| 2 | prec1406 | igr140#chr1#x1=582220#l=2039_509+583 | CTTCATCTTCATCATCATCAG | 76 | |
| 3 | prec1410 | igr140#chr1#x1=582220#l=2039_509+589 | CTTCATCTTCATCATCATCAG | 76 | |
| 4 | prec1414 | igr140#chr1#x1=582220#l=2039_509+586 | CTTCATCTTCATCATCATCAG | 76 |
Gene Sequence:
ggagagagau aggcuucgcu agacaauuuc uucaaucucu ggaagaagaa guuggucuga 60 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 gccuucauca acguuguucu uucgggaAUG GGCACUGAAA CAGUUUCAAA ACCUGUGAUG 120 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 GAUAAUGGGU CUGGAGACAG UGAUGAUGAC AAGCCUUUAG CGUUCAAGAG GAAUAAUACA 180 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 GUGGCUUCUA AUUCGAAUCA AUCUAAAUCC AAUUCCCAGA GAAGCAAGGC AGUUCCUACC 240 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 ACCAAGGUAU CACCUAUGAG AUCACCUGUG ACUAGCCCAA AUGGAACCAC UCCUUCGAAU 300 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 AAAACUUCUA UAGUGAAAUC CUCUAUGCCA UCAUCUUCUU CUAAGGCUUC ACCAGCAAAG 360 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 UCACCAUUGC GGAAUGAUAU GCCCUCUACU GUUAAGGAUA GGAGCCAGUU ACAGAAAGAU 420 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 CAGUCUGAAU GUAAAAUUGA GCAUGAGGAU UCUGAGGAUG AUAGACCUUU AAGUUCCAUA 480 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 CUAUCUGGAA AUAAAGGGCC AACCUCUUCG CGGCAGGUUU CUUCACCGCA GCCAGAGAAA 540 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 AAGAAUAAUG GUGAUCGACC UCUUGAUAGA GCAAGCAGAA UUAUAAAAGA CGAGUCAGAU 600 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 GAUGAAACUC CAAUCUCGUC AAUGUUUCGG AAGAAGAUUG AUAGUGGGAU GUCAGGGGGC 660 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 AACCAGCUCU CCAAUGAUGA AAAGAAACCU UUGGUUCAAA AGUUGCAUCA GAAUGGUUCC 720 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 ACAGUUAAGA AUGAAGUGCC GAAUGGUAAG GUAUUAGGUA AGAGACCUCU GGAGAAGAAU 780 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 AGUUCUGCAG AUCAAUCUUC CUUGAAGAAG GCCAAAAUAU CAGCUUCACC UACUUCAGUG 840 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 AAAAUGAAAC AAGAUUCUGU CAAGAAAGAG AUAGAUGAUA AGGGAAGGGU UUUGGUUUCA 900 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 CCAAAAAUGA AAGCUAAACA GUUAUCUACC AGAGAAGAUG GAACUGAUGA UGAUGAUGAU 960 .......... .......... .......... .......... ...******* ********** prec1402 .......... .......... .......... .......... ...******* ********** prec1406 .......... .......... .......... .......... ...******* ********** prec1410 .......... .......... .......... .......... ...******* ********** prec1414 GAUGAUGUUC CGAUAUCCAA GAGAUUCAAA UCAGAUUCCU CCAACAGUAA CACAUCAUCU 1020 ****...... .......... .......... .......... .......... .......... prec1402 ****...... .......... .......... .......... .......... .......... prec1406 ****...... .......... .......... .......... .......... .......... prec1410 ****...... .......... .......... .......... .......... .......... prec1414 GCAAAGCCAA AAGCAGUAAA ACUAAAUUCU ACUUCAUCAG CUGCAAAGCC AAAAGCGAGA 1080 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 AAUGUCGUUU CUCCUAGGUC CAGAGCAAUG ACCAAAAACA CUAAGAAAGU AACGAAGGAC 1140 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 UCAAAAUAUU CCACGUCUUC AAAAUCAUCA CCUUCCUCUG GAGAUGGGCA AAAGAAAUGG 1200 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 ACUACUUUGG UGCACAACGG UGUAAUAUUU CCACCGCCAU ACAAGCCUCA UGGCAUUAAG 1260 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 AUUUUGUACA AGGGGAAACC UGUUGACCUA ACUAUUGAAC AAGAAGAGGU UGCGACUAUG 1320 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 UUUGCAGUGA UGAGAGAGAC AGAUUAUUAU ACUAAACCUC AAUUUCGGGA GAAUUUCUGG 1380 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 AAUGACUGGC GAAGACUGCU UGGCAAGAAA CAUGUGAUAC AGAAGUUGGA UGAUUGUGAC 1440 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 UUUACUCCCA UAUAUGAGUG GCAUUUGGAA GAGAAAGAGA AGAAGAAACA AAUGAGCACA 1500 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 GAGGAGAAAA AAGCUUUGAA AGAGGAGAAA AUGAAGCAAG AGGAGAAAUA UAUGUGGGCU 1560 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 GUUGUUGAUG GUGUCAAAGA GAAGAUUGGU AAUUUCAGAG UGGAACCGCC UGGCCUUUUC 1620 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 AGAGGCCGUG GAGAACAUCC CAAGAUGGGA AAACUAAAGA AGCGUAUCCA UCCAUGCGAG 1680 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 AUCACCUUAA AUAUCGGGAA AGGUGCUCCU AUUCCAGAAU GUCCAAUUGC UGGUGAAAGA 1740 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 UGGAAAGAAG UAAAGCAUGA UAACACAGUC ACCUGGCUAG CUUUCUGGGC UGAUCCUAUU 1800 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 AACCCAAAAG AAUUCAAGUA UGUAUUUUUG GGAGCUGGCA GUUCUCUGAA AGGGCUGAGC 1860 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 GACAAAGAGA AGUACGAGAA AGCUAGGAAU CUUACGGAUC AUAUAGAUAA UAUAAGAACA 1920 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 ACAUACACCA AGAAUUUUAC UGCCAAGGAU GUUAAAAUGA GGCAAAUUGC UGUGGCGACA 1980 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 UAUCUCAUUG AUAAAUUGGC GCUUAGGGCU GGAAAUGAGA AGGAUGAUGA UGAGGCCGAC 2040 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 ACUGUUGGUU GUUGUACUUU AAAAGUUGGA AAUGUGGAGU GUAUUCCUCC AAAUAAAAUA 2100 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 AAGUUUGAUU UUCUUGGUAA GGAUUCAAUC CAGUAUGUGA ACACAGUCGA GGUUGAGCCU 2160 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 CUUGUUUACA AGGCCAUUGG ACAGUUCCAG GCGGGAAAAU CCAAAACAGA UGAUCUUUUU 2220 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 GAUGAGUUAG ACACAAGUAA ACUGAAUGCU CAUUUGAAGG AACUUGUGCC UGGUCUCACA 2280 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 GCUAAAGUAU UCCGUACAUA UAAUGCUUCC AUCACUUUGG AUGAAAUGCU GAGUCAAGAA 2340 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 ACCAAAGAUG GCGAUGUUAC UCAAAAAAUA GUAGUUUAUC AGAAAGCAAA UAAGGAGGUU 2400 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 GCCAUAAUCU GCAAUCAUCA GCGUACUGUA UCAAAGACAC AUGGUGCGCA AAUUGAAAAA 2460 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 UUGACUGCGA GAAUAGAAGA ACUCAAGGAG GUUCUUAAAG AGCUCAAAAC UAAUCUUGAC 2520 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 CGGGCUAAAA AGGGAAAACC ACCAUUGGAA GGUUCUGAUG GAAAGAAGAU UAGAAGCUUA 2580 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 GAACCAAACG CGUGGGAGAA GAAGAUUGCU CAACAGAGUG CUAAGAUCGA GAAAAUGGAA 2640 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 CGAGACAUGC AUACAAAAGA GGACUUGAAA ACAGUGGCAC UGGGCACGUC UAAGAUCAAC 2700 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 UACCUGGAUC CUAGAAUCAC AGUUGCAUGG UGCAAACGUC AUGAAGUACC AAUCGAAAAG 2760 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 AUAUUCACCA AGUCUCUUUU GGAGAAGUUU GCGUGGGCAA UGGAUGUAGA ACCCGAGUAC 2820 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 AGAUUCUCGC GCCGUUAGgu auagagaagc ucuucucgga uggagcaagu auuggagggc 2880 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 aaaagagcug aaugagauaa gagcaaagag aaaaccggcc uuucuucuau ucaucuuccu 2940 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 cccuuguuua gaauuuuauu accuuaguga guaaaaaaca ugaacauguc aagcuguuuc 3000 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 auuagugucu uuuuuaacau uacuaugacu caaauguuau guuauuugua acauuacuau 3060 .......... .......... .......... .......... .......... .......... prec1402 .......... .......... .......... .......... .......... .......... prec1406 .......... .......... .......... .......... .......... .......... prec1410 .......... .......... .......... .......... .......... .......... prec1414 gauuaaagaa auagaaaauc cgaagaaga 3089 .......... .......... ......... prec1402 .......... .......... ......... prec1406 .......... .......... ......... prec1410 .......... .......... ......... prec1414