| IGR sequence: | igr2356#chr3#x1=9872012#l=10062 |
|---|---|
| Mature miRNA sequence: | UGGUAGCCAAGGAUGACUUGCCUG |
| encoded miRNA: | MIR43b |
| Precursor location: | 1235 - 1365 (negative strand) |
| precursor length: | 131 (48 basepairs) |
| MIR position: | 1 - 24 (1342 - 1365) |
| MIR length: | 24 (21 paired bases) |
| miRNA location TIGR v3: | chr3:9873246<9873376 |
| miRNA location TIGR v5: | chr3:9873236<9873366 |
| Folding energy: | -53.70 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster006 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** ****
UGGUAGCCAA GGAUGACUUG CCUGACUCUU UGUGUAAAAU GUUUAGUGUC UUGUUUGAAG 60
:((((((((( (((-((((-( (((((-(((( (--((((((( (,,<<<<<-< <<_____>>>
UCACUAUAAG UUGUAUCAAG CAAUGACCAU UUUGCUUAUA AAAAAGAUAU CAGGCAGUCU 120
->>>>>,,,< <<<<_____> >>>>,,,))) )))))----- --)))))--) ))))))))))
CCUUGGCUAU C 131
)))))))))) )
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g17590.1 | 68408.m01959 transcription factor -related | 4 | 10 |
| 2 | At1g72830.1 | 68408.m07728 CCAAT-binding factor B subunit homolog -related | 4 | 8 |
Rice homologs
- gnl|BL_ORD_ID|3514_19522-19630_1-24
- gnl|BL_ORD_ID|3514_19522+19630_86-109
- gnl|BL_ORD_ID|3443_19522-19630_1-24
- gnl|BL_ORD_ID|3443_19522+19630_86-109
- gnl|BL_ORD_ID|2878_55661+55769_86-109
- gnl|BL_ORD_ID|2878_55661-55769_1-24
- gnl|BL_ORD_ID|2113_123474-123579_1-24
- gnl|BL_ORD_ID|2113_119287-119379_1-24
- gnl|BL_ORD_ID|2113_130006-130127_1-24
- gnl|BL_ORD_ID|2113_130006+130127_99-122
- gnl|BL_ORD_ID|990_58582-58674_1-24
- gnl|BL_ORD_ID|990_69301-69422_1-24
- gnl|BL_ORD_ID|990_69301+69422_99-122
- gnl|BL_ORD_ID|990_62769-62874_1-24