| IGR sequence: | igr1929#chr5#x1=8503345#l=5327 |
|---|---|
| Mature miRNA sequence: | CCGGCAAGUCAUCCUUGGCUGCAU |
| encoded miRNA: | MIR80a |
| Precursor location: | 1911 - 2017 (negative strand) |
| precursor length: | 107 (39 basepairs) |
| MIR position: | 84 - 107 (1911 - 1934) |
| MIR length: | 24 (21 paired bases) |
| miRNA location TIGR v3: | chr5:8505255<8505361 |
| miRNA location TIGR v5: | chr5:8527511<8527617 |
| Folding energy: | -38.50 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster008 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
AUGUAGCCGA AGGACAACUU GCCAGAAAUA UGUUCAUCAC AUAAUUAAUC AUCACAUUAU 60
((((((((-( ((((--(((( (((-(((--- ((((-((((( (((--((((_ _____))))-
******* ********** *******
UCAUAUGCAU GGUUAACAAC GUUCCGGCAA GUCAUCCUUG GCUGCAU 107
---))))--) )))-))))-- -)))-))))) ))--)))))) )))))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g54150.1 | 68408.m05663 zinc finger (C3HC4-type RING finger) protein family | 4 | 8 |
Rice homologs
- gnl|BL_ORD_ID|2404_2677+2773_1-24
- gnl|BL_ORD_ID|2404_2677-2774_75-98
- gnl|BL_ORD_ID|2314_13848-13945_75-98
- gnl|BL_ORD_ID|2314_13848+13944_1-24
- gnl|BL_ORD_ID|1188_62525-62636_89-112