| IGR sequence: | igr1621#chr1#x1=6694921#l=2247 |
|---|---|
| Mature miRNA sequence: | UGGUAGCCAAGGAUGACUUGCCU |
| encoded miRNA: | MIR43c |
| Precursor location: | 533 - 638 (negative strand) |
| precursor length: | 106 (38 basepairs) |
| MIR position: | 1 - 23 (616 - 638) |
| MIR length: | 23 (20 paired bases) |
| miRNA location TIGR v3: | chr1:6695453<6695558 |
| miRNA location TIGR v5: | chr1:6695453<6695558 |
| Folding energy: | -47.20 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster006 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** ***
UGGUAGCCAA GGAUGACUUG CCUGCGUUUU AGACCAUAUA UAUCAAAGAC UCACUCGAUC 60
:((((((((( (((-((((-( ((((((---- -(((((---- --((-((((( (---((____
GAUAGUCUUA GAGUUGGUUG GUCGUCAGGC AGUCUCCUUG GCUAUU 106
))-))))))- ))--)))))- --))-))))) )))))))))) ))))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g17590.1 | 68408.m01959 transcription factor -related | 3 | 10 |
| 2 | At1g72830.1 | 68408.m07728 CCAAT-binding factor B subunit homolog -related | 3 | 8 |
Rice homologs
- gnl|BL_ORD_ID|2510_67219-67328_1-23
- gnl|BL_ORD_ID|2510_67219+67328_88-110
- gnl|BL_ORD_ID|1952_77645-77805_1-23
- gnl|BL_ORD_ID|1952_44099-44255_1-23