Matrix_101 | ERF5 | Not available | Upstream | -55 |
| | | Upstream | -43 |
Matrix_110 | ATABI4;AT3G57600 | Not available | Upstream | -53 |
| | | Upstream | -44 |
| | | Upstream | -41 |
Matrix_119 | RRTF1 | Not available | Upstream | -54 |
| | | Upstream | -51 |
| | | Upstream | -42 |
Matrix_138 | RRTF1 | Not available | Upstream | -54 |
| | | Upstream | -42 |
Matrix_146 | ORA47 | Not available | Upstream | -55 |
| | | Upstream | -43 |
Matrix_147 | ERF3;AT1G80580 | Not available | Upstream | -53 |
| | | Upstream | -41 |
Matrix_154 | AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130 | Not available | Upstream | -53 |
Matrix_155 | RAP2.6;ERF110;ABR1 | Not available | Upstream | -54 |
| | | Upstream | -42 |
Matrix_171 | LBD3;LBD4 | Not available | Upstream | -42 |
Matrix_184 | AGL15 | Not available | Upstream | -153 |
Matrix_190 | ATERF1 | Not available | Upstream | -53 |
| | | Upstream | -44 |
Matrix_224 | ERF1 | Not available | Upstream | -54 |
| | | Upstream | -45 |
| | | Upstream | -42 |
Matrix_234 | RAP2.3 | Not available | Upstream | -55 |
| | | Upstream | -52 |
| | | Upstream | -43 |
Matrix_243 | RAP2.12;RAP2.2 | Not available | Upstream | -54 |
| | | Upstream | -42 |
Matrix_244 | DREB2C | Not available | Upstream | -54 |
Matrix_252 | RAP2.6 | Not available | Upstream | -55 |
| | | Upstream | -52 |
| | | Upstream | -43 |
Matrix_261 | ATERF-1 | Not available | Upstream | -54 |
| | | Upstream | -42 |
Matrix_272 | DEAR4 | Not available | Upstream | -55 |
| | | Upstream | -43 |
Matrix_277 | RAP2.6 | Not available | Upstream | -54 |
Matrix_287 | ERF2 | Not available | Upstream | -55 |
| | | Upstream | -43 |
Matrix_288 | RAP2.3 | Not available | Upstream | -54 |
| | | Upstream | -42 |
Matrix_295 | ERF1 | Not available | Upstream | -53 |
| | | Upstream | -41 |
Matrix_321 | HRD | Not available | Upstream | -54 |
| | | Upstream | -42 |
Matrix_326 | AT5G07310;Rap2.6L;AT5G61890 | Not available | Upstream | -54 |
| | | Upstream | -42 |
Matrix_334 | AT3G23230 | Not available | Upstream | -54 |
| | | Upstream | -42 |
Matrix_343 | AT2G33710 | Not available | Upstream | -55 |
| | | Upstream | -52 |
| | | Upstream | -43 |
Matrix_355 | ERF10;ERF11 | Not available | Upstream | -54 |
| | | Upstream | -42 |
Matrix_360 | ORA59 | Not available | Upstream | -53 |
| | | Upstream | -41 |
Matrix_363 | RAP2.3 | Not available | Upstream | -54 |
| | | Upstream | -42 |
Matrix_374 | AT5G07580;AT5G61590 | Not available | Upstream | -54 |
Matrix_377 | AT1G75490;DREB2C;AT2G40350;AT5G18450 | Not available | Upstream | -54 |
| | | Upstream | -45 |
| | | Upstream | -42 |
Matrix_378 | ATERF1 | Not available | Upstream | -55 |
| | | Upstream | -52 |
| | | Upstream | -43 |
Matrix_385 | DEAR4 | Not available | Upstream | -54 |
Matrix_394 | DREB_U | Not available | Upstream | -54 |
Matrix_401 | MYB55 | Not available | Upstream | -91 |
Matrix_406 | ATERF-7 | Not available | Upstream | -53 |
| | | Upstream | -41 |
Matrix_409 | DEAR3 | Not available | Upstream | -54 |
| | | Upstream | -45 |
| | | Upstream | -42 |
Matrix_426 | CRF1;CRF2 | Not available | Upstream | -54 |
| | | Upstream | -42 |
Matrix_45 | DRN | Not available | Upstream | -53 |
| | | Upstream | -41 |
Matrix_452 | MYB46 | Not available | Upstream | -91 |
| | | Upstream | -49 |
Matrix_454 | AT1G77200;ATERF38;AT4G16750;AT5G52020 | Not available | Upstream | -54 |
| | | Upstream | -45 |
Matrix_462 | ATERF-8 | Not available | Upstream | -53 |
| | | Upstream | -41 |
Matrix_473 | RRTF1 | Not available | Upstream | -55 |
| | | Upstream | -52 |
| | | Upstream | -43 |
Matrix_484 | ATERF13 | Not available | Upstream | -53 |
| | | Upstream | -41 |
Matrix_493 | AT1G22985;AT1G71130 | Not available | Upstream | -54 |
| | | Upstream | -42 |
Matrix_50 | ATERF14;AT5G43410 | Not available | Upstream | -54 |
| | | Upstream | -42 |
Matrix_506 | DRNL;ATERF-4 | Not available | Upstream | -54 |
| | | Upstream | -42 |
Matrix_517 | ERF12 | Not available | Upstream | -53 |
| | | Upstream | -41 |
Matrix_57 | WIN1;SHN3;SHN2 | Not available | Upstream | -54 |
| | | Upstream | -45 |
| | | Upstream | -42 |
Matrix_86 | CRF5;CRF6;CRF4 | Not available | Upstream | -54 |
| | | Upstream | -42 |
Matrix_91 | CRF3 | Not available | Upstream | -54 |
| | | Upstream | -42 |
Motif_131 | P1BS | PHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtii | Downstream | 1425 |
Motif_193 | GLK1 | GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis | Downstream | 1440 |
Motif_274 | MYB1 binding site motif | Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein | Upstream | -93 |
Motif_292 | MYBPZM | Core of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genes | Upstream | -91 |
Motif_307 | TATCCAYMOTIFOSRAMY3D | TATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repression | Downstream | 1423 |
Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | Upstream | -52 |
| | | Upstream | -40 |
Motif_543 | TATCCACHVAL21 | TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA response | Downstream | 1423 |
Motif_628 | TATCCAOSAMY | TATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2 | Downstream | 1424 |
Motif_658 | GT1CONSENSUS | Consensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expression | Downstream | 1436 |
Motif_98 | SEF3MOTIFGM | SEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4 | Upstream | -99 |