View conserved binding sites


Gene
GM06G34330
Description
Transcription factor TCP3
Alias
Glyma06g34330;Glyma06g34330.1;PAC:26301576;Glyma06g34330.1
Binding siteNameDescriptionLocationPosition
Matrix_101ERF5Not availableUpstream-55
Upstream-43
Matrix_110ATABI4;AT3G57600Not availableUpstream-53
Upstream-44
Upstream-41
Matrix_119RRTF1Not availableUpstream-54
Upstream-51
Upstream-42
Matrix_138RRTF1Not availableUpstream-54
Upstream-42
Matrix_146ORA47Not availableUpstream-55
Upstream-43
Matrix_147ERF3;AT1G80580Not availableUpstream-53
Upstream-41
Matrix_154AT1G22190;AT1G36060;AT1G64380;RAP2.4;AT2G20880;AT2G22200;AT4G13620;AT4G28140;AT4G39780;AT5G65130Not availableUpstream-53
Matrix_155RAP2.6;ERF110;ABR1Not availableUpstream-54
Upstream-42
Matrix_171LBD3;LBD4Not availableUpstream-42
Matrix_184AGL15Not availableUpstream-153
Matrix_190ATERF1Not availableUpstream-53
Upstream-44
Matrix_224ERF1Not availableUpstream-54
Upstream-45
Upstream-42
Matrix_234RAP2.3Not availableUpstream-55
Upstream-52
Upstream-43
Matrix_243RAP2.12;RAP2.2Not availableUpstream-54
Upstream-42
Matrix_244DREB2CNot availableUpstream-54
Matrix_252RAP2.6Not availableUpstream-55
Upstream-52
Upstream-43
Matrix_261ATERF-1Not availableUpstream-54
Upstream-42
Matrix_272DEAR4Not availableUpstream-55
Upstream-43
Matrix_277RAP2.6Not availableUpstream-54
Matrix_287ERF2Not availableUpstream-55
Upstream-43
Matrix_288RAP2.3Not availableUpstream-54
Upstream-42
Matrix_295ERF1Not availableUpstream-53
Upstream-41
Matrix_321HRDNot availableUpstream-54
Upstream-42
Matrix_326AT5G07310;Rap2.6L;AT5G61890Not availableUpstream-54
Upstream-42
Matrix_334AT3G23230Not availableUpstream-54
Upstream-42
Matrix_343AT2G33710Not availableUpstream-55
Upstream-52
Upstream-43
Matrix_355ERF10;ERF11Not availableUpstream-54
Upstream-42
Matrix_360ORA59Not availableUpstream-53
Upstream-41
Matrix_363RAP2.3Not availableUpstream-54
Upstream-42
Matrix_374AT5G07580;AT5G61590Not availableUpstream-54
Matrix_377AT1G75490;DREB2C;AT2G40350;AT5G18450Not availableUpstream-54
Upstream-45
Upstream-42
Matrix_378ATERF1Not availableUpstream-55
Upstream-52
Upstream-43
Matrix_385DEAR4Not availableUpstream-54
Matrix_394DREB_UNot availableUpstream-54
Matrix_401MYB55Not availableUpstream-91
Matrix_406ATERF-7Not availableUpstream-53
Upstream-41
Matrix_409DEAR3Not availableUpstream-54
Upstream-45
Upstream-42
Matrix_426CRF1;CRF2Not availableUpstream-54
Upstream-42
Matrix_45DRNNot availableUpstream-53
Upstream-41
Matrix_452MYB46Not availableUpstream-91
Upstream-49
Matrix_454AT1G77200;ATERF38;AT4G16750;AT5G52020Not availableUpstream-54
Upstream-45
Matrix_462ATERF-8Not availableUpstream-53
Upstream-41
Matrix_473RRTF1Not availableUpstream-55
Upstream-52
Upstream-43
Matrix_484ATERF13Not availableUpstream-53
Upstream-41
Matrix_493AT1G22985;AT1G71130Not availableUpstream-54
Upstream-42
Matrix_50ATERF14;AT5G43410Not availableUpstream-54
Upstream-42
Matrix_506DRNL;ATERF-4Not availableUpstream-54
Upstream-42
Matrix_517ERF12Not availableUpstream-53
Upstream-41
Matrix_57WIN1;SHN3;SHN2Not availableUpstream-54
Upstream-45
Upstream-42
Matrix_86CRF5;CRF6;CRF4Not availableUpstream-54
Upstream-42
Matrix_91CRF3Not availableUpstream-54
Upstream-42
Motif_131P1BSPHR1-binding sequence found in the upstream regions of phosphate starvation responsive genes from several plant species; phr1 (phosphate starvation response 1) gene codes for PHR1 protein related to PSR1 gene in C. reinhardtiiDownstream1425
Motif_193GLK1GLK transcription factors coordinate expression of the photosynthetic apparatus in ArabidopsisDownstream1440
Motif_274MYB1 binding site motifIsolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoproteinUpstream-93
Motif_292MYBPZMCore of consensus maize P (myb homolog) binding site; 6 bp core; Maize P gene specifies red pigmentation of kernel pericarp, cob, and other floral organs; P binds to A1 gene, but not Bz1 gene; Maize C1 (myb homolog) activates both A1 and Bz1 genesUpstream-91
Motif_307TATCCAYMOTIFOSRAMY3DTATCCAY motif found in rice RAmy3D alpha-amylase gene promoter; a GATA motif as its antisense sequence; TATCCAY motif and G motif are responsible for sugar repressionDownstream1423
Motif_313ERF1 BS in AtCHI-BCore of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperatureUpstream-52
Upstream-40
Motif_543TATCCACHVAL21TATCCAC box is a part of the conserved cis-acting response complex (GARC) that most often contain three sequence motifs, the TAACAAA box, or GA-responsive element (GARE); the pyrimidine box, CCTTTT (see S000259); and the TATCCAC box, which are necessary for a full GA responseDownstream1423
Motif_628TATCCAOSAMYTATCCA element found in alpha-amylase promoters of rice at positions ca.90 to 150bp upstream of the transcription start sites; Binding sites of OsMYBS1, OsMYBS2 and OsMYBS3 which mediate sugar and hormone regulation of alpha-amylase gene expression; See also AMYBOX2Downstream1424
Motif_658GT1CONSENSUSConsensus GT-1 binding site in many light-regulated genes, e.g., RBCS from many species, PHYA from oat and rice, spinach RCA and PETA, and bean CHS15; GT-1 can stabilize the TFIIA-TBP-DNA (TATA box) complex; The activation mechanism of GT-1 may be achieved through direct interaction between TFIIA and GT-1; Binding of GT-1-like factors to the PR-1a promoter influences the level of SA-inducible gene expressionDownstream1436
Motif_98SEF3MOTIFGMSEF3 binding site; Soybean consensus sequence found in the 5' upstream region of beta-conglycinin (7S globulin) gene; AACCCA(-27bp-)AACCCA; SEF=soybean embryo factor; SEF2; SEF3; SEF4Upstream-99