MapMan terms associated with a binding site
- Binding site
- Motif_354
- Name
- VSF1PVGRP18
- Description
- VSF-1 binding site in French bean grp1.8 gene promoter; VSF-1 is a tomato bZIP transcription factor; VSF-1 binding site is found in 28 bp vs-1 element; This sequence controls vascular gene expression in transgenic tobacco; VS-1 found in bean grp1.8 gene promoter; Located between -203 and -176; Partially overlaps with NRE; Confers xylem-specific expression
- #Associated genes
- 28
- #Associated MapMan terms
- 30
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MapMan | Description | #Associated genes | ath | bra | cme | egr | gma | ptr | ppe | sly | stu | vvi |
---|---|---|---|---|---|---|---|---|---|---|---|---|
27 | RNA | 5 (17.86%) | 0 | 2 | 0 | 0 | 2 | 0 | 0 | 1 | 0 | 0 |
27.3 | RNA.regulation of transcription | 5 (17.86%) | 0 | 2 | 0 | 0 | 2 | 0 | 0 | 1 | 0 | 0 |
31 | cell | 4 (14.29%) | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 1 | 0 | 0 |
20 | stress | 2 (7.14%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 |
27.3.3 | RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family | 2 (7.14%) | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 |
29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 2 (7.14%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 |
31.1 | cell.organisation | 2 (7.14%) | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 |
31.3 | cell.cycle | 2 (7.14%) | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
11 | lipid metabolism | 1 (3.57%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
11.1 | lipid metabolism.FA synthesis and FA elongation | 1 (3.57%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
11.1.31 | lipid metabolism.FA synthesis and FA elongation.pyruvate DH | 1 (3.57%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
20.1 | stress.biotic | 1 (3.57%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
20.2 | stress.abiotic | 1 (3.57%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
20.2.1 | stress.abiotic.heat | 1 (3.57%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
21 | redox | 1 (3.57%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
21.2 | redox.ascorbate and glutathione | 1 (3.57%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
21.2.2 | redox.ascorbate and glutathione.glutathione | 1 (3.57%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | 1 (3.57%) | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
27.3.44 | RNA.regulation of transcription.Chromatin Remodeling Factors | 1 (3.57%) | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
27.3.99 | RNA.regulation of transcription.unclassified | 1 (3.57%) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
28 | DNA | 1 (3.57%) | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
28.1 | DNA.synthesis/chromatin structure | 1 (3.57%) | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
29.2.1.1.1.1.3 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast.30S subunit.S3 | 1 (3.57%) | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
29.2.1.1.1.2.14 | protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L14 | 1 (3.57%) | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
29.2.1.2.2.11 | protein.synthesis.ribosomal protein.eukaryotic.60S subunit.L11 | 1 (3.57%) | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
30 | signalling | 1 (3.57%) | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
30.4 | signalling.phosphinositides | 1 (3.57%) | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
30.4.1 | signalling.phosphinositides.phosphatidylinositol-4-phosphate 5-kinase | 1 (3.57%) | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
33 | development | 1 (3.57%) | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
33.99 | development.unspecified | 1 (3.57%) | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |