PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Motif_455
Name: AG binding site motif
Description: Nucleotide sequences recognized by the AGAMOUS MADS domain of Arabidopsis thaliana in vitro

Sequence: TTDCCWWWWWWGGH
Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_327	AGAMOUSATCONSENSUS	Binding consensus sequence of Arabidopsis AGAMOUS MADS domain; MCM1 binding-sites in a-mating-type-specific promoters of Saccharomyces cerevisiae show similarities with the binding-site sequence of the AGAMOUS MADS domain; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development; See S000338	85.71%
Motif_110	AGATCONSENSUS	Binding consensus sequence for the product of the Arabidopsis floral homeotic gene AGAMOUS (AG); AG protein contains a region similar to the DNA binding domain of SRF and MCM1; The consensus sequence contains a CArG box; AG protein is a putative transcription factor for floral genes; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development	83.68%
Motif_198	CARGATCONSENSUS	CArG consensus sequence found in the promoter of Arabidopsis SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO)	71.43%
Motif_105	AGL3 binding site motif	The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein	67.30%
Matrix_358	AGL15	Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study	65.36%
Motif_6	AGL1 binding site motif	Binding consensus sequence of Arabidopsis AGL1 (AGAMOUS-like 1); AGL1 contains MADS domain; AGL20 is a MADS domain gene from Arabidopsis that is activated in shoot apical meristem during the transition to flowering; AGL20 is also regulated by the Gibberellin pathway; Complex regulatory net works involving several MADS-genes underlie development of vegetative structures	64.93%
Motif_47	CARGNCAT	Noncanonical CArG motif (CC-Wx8-GG) found in the promoter region of DTA1 (AtGA2ox6); A relevant cis element for the response to AGL15 (AGAMOUS-like 15) in vivo	63.18%
Motif_235	C8GCARGAT	Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)	59.06%
Matrix_136	SEP3	Not Available	56.60%
Matrix_445	AG	Not Available	55.25%
Matrix_43	AG	Not Available	55.25%
Matrix_98	AG	Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS	55.25%
Matrix_386	AGL1	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	54.87%
Matrix_121	SHP1	Not Available	54.87%
Matrix_83	PRR5	Not Available	54.79%
Motif_9	RBENTGA3	rbe (RSG binding element) found in the tobacco GA3 gene promoter; Binding site of RSG (Repression of shoot growth); RSG is a bZIP transcriptional activator; RSG regulates the morphology of plants by controlling the endogenous amounts of GAs	53.98%
Matrix_458	MGP; AT1G14580; AtIDD7; AtIDD5; AtIDD4; AtIDD12; JKD; AT5G66730	Not Available	53.89%
Matrix_212	ATHB-12	Not Available	53.09%
Matrix_125	AHL12	Not Available	52.94%
Matrix_18	AP3	Not Available	52.84%
Matrix_497	AP3	Not Available	52.37%
Matrix_213	ATHB22	Not Available	52.05%
Matrix_464	AGL15; AGL71	Not Available	52.05%
Matrix_172	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	51.30%
Matrix_416	ASL5	Not Available	51.30%
Matrix_48	PI	Not Available	51.26%
Motif_472	WRKY18	Identification of genes encoding receptor-like protein kinases as possible targets of pathogen- and salicylic acid-induced WRKY DNA-binding proteins in Arabidopsis	50.99%
Motif_615	MARTBOX	T-Box; Motif found in SAR (scaffold attachment region; or matrix attachment region, MAR)	50.96%
Motif_691	HBOXCONSENSUSPVCHS	H-box; Consensus sequence of H-boxes found in bean chs15 gene promoter; Essential for both light regulation and elicitor induction; Similar sequence was found in tobacco Tnt1 retrotransposon promoter (LTR); Tnt1 is induced by wounding and by abiotic stress; KAP-2 binds to the H-box and stimulates transcription from a promoter harboring the H-box; KAP-2 shares sequence similarity to the large subunit of mammalian Ku autoantigen	50.80%
Matrix_521	AHL20	Not Available	50.67%
Matrix_222	AGL2	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	50.61%
Matrix_28	SEP1	Not Available	50.61%
Motif_608	OBP-1-4-5 BS in GST6	OBP1, 4, and 5 (OBF binding protein) binding site found in the Arabidopsis GST6 gene promoter; Located between -398 and -388; OBP1 is able to stimulate the binding of OBF proteins to the GST6 promoter;Overexpression of OBP3 lead to severe growth defect with altered root development and yellowish leaves; All OBP proteins contain transcriptional activation domains in their C-term. region; Dof protein play important roles in plant growth and development;The promoter of a H202-inducible, Arabidopsis glutathione S-transferase gene contains closely linked OBF- and OBP1-binding RT	50.40%
Matrix_168	AHL25	Not Available	50.23%
Motif_656	AG BS in SUP	Dimerization specificity of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS	50.00%