| Matrix_147 | ERF3; AT1G80580 | Not Available | | 84.89% |
| Matrix_45 | DRN | Not Available | | 82.51% |
| Matrix_484 | ATERF13 | Not Available | | 82.12% |
| Matrix_344 | ATERF15; AT4G18450 | Not Available | | 82.01% |
| Matrix_295 | ERF1 | Not Available | | 79.07% |
| Matrix_517 | ERF12 | Not Available | | 77.08% |
| Matrix_360 | ORA59 | Not Available | | 75.73% |
| Matrix_73 | DEAR3; RAP2.9; RAP2.10 | Not Available | | 72.98% |
| Matrix_478 | AT1G01250 | Not Available | | 71.60% |
| Matrix_242 | AT2G25820; AT3G16280; AT4G32800; TINY2; tny | Not Available | | 70.80% |
| Matrix_448 | ATERF6 | Not Available | | 70.08% |
| Motif_320 | AGCBOXNPGLB | AGC box repeated twice in a 61 bp enhancer element in tobacco class I beta-1,3-glucanase (GLB) gene;GCC-box; Binding sequence of Arabidopsis AtERFs; AtERF1,2 and 5 functioned as activators of GCC box-dependent transcription; AtERF3 and 4 acted as repressors; AtERF proteins are stress signal-response factors; EREBP2 binding site; Conserved in most PR-protein genes; Rice MAPK (BWMK1) phosphorylates OS EREBP1, which enhance DNA-binding activity of the factor to the GCC box | | 66.78% |
| Motif_444 | OCTAMOTIF2 | Octamer motif found in histone-gene-specific consensus sequences; 200 base upstream from the initiation codon ATG; Exist in all of seven plant histone genes | | 66.77% |
| Matrix_426 | CRF1; CRF2 | Not Available | | 65.44% |
| Matrix_433 | ATERF1 | Not Available | | 64.93% |
| Motif_313 | ERF1 BS in AtCHI-B | Core of GCC-box found in many pathogen-responsive genes such as PDF1.2, Thi2.1, and PR4; Has been shown to function as ethylene-responsive element; Appears to play important roles in regulating jasmonate-responsive gene expression; Tomato Pti4 (ERF) regulates defence-related gene expression via GCC box and non-GCC box cis elements (Myb1 (GTTAGTT) and G-box(CACGTG)); Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1;Molecular responses to dehydration and low temperature | | 64.42% |
| Matrix_86 | CRF5; CRF6; CRF4 | Not Available | | 63.37% |
| Matrix_506 | DRNL; ATERF-4 | Not Available | | 62.98% |
| Matrix_261 | ATERF-1 | Not Available | | 61.78% |
| Matrix_493 | AT1G22985; AT1G71130 | Not Available | | 61.48% |
| Matrix_395 | AT1G19210; ORA47; AT4G31060; AT5G21960 | Not Available | | 61.32% |
| Matrix_223 | MYB60; ATMYB31; ATMYB30; MYB94; MYBCOV1 | Not Available | | 61.09% |
| Motif_371 | DRE-like promoter motif | The Expression Profile Matrix of Arabidopsis Transcription Factor Genes Suggests Their Putative Functions in Response to Environmental Stresses | | 61.05% |
| Motif_685 | PALINDROMICCBOXGM | Palindromic C-box in soybean;bZIP factors, STGA1 and STFs (STF1 and STF2) found in soybean apical hypocotyl, bind to this sequence | | 60.56% |
| Matrix_91 | CRF3 | Not Available | | 60.41% |
| Matrix_321 | HRD | Not Available | | 59.96% |
| Motif_54 | LTREATLTI78 | Putative low temperature responsive element (LTRE); Found in Arabidopsis thaliana low-temperature-induced (lti) genes, lti78 and lti65; Repeated four times in lti78 which is also known as cor78 and rd29A; Found also in barley low temperature responsive genes, blt4.2, blt4.6, blt4.9 (lipid transfer genes); cold inducible; See LTRECORE; Also present in rab18, kin1, and kin2; Differential expression of two related, low-temperature-induced genes in Arabidopsis thaliana | | 57.97% |
| Motif_457 | AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 57.95% |
| Motif_50 | AtERF-7; AtERF-4; AtERF-3; AtERF-1; AtERF-2; AtERF-5 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Role of an Arabidopsis AP2/EREBP-type transcriptional repressor in abscisic acid and drought stress responses | | 57.95% |
| Motif_60 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 57.95% |
| Motif_625 | AtERF-4; AtERF-3 | Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression | | 57.95% |
| Motif_603 | SITEIIATCYTC | Site II element found in the promoter regions of cytochrome genes (Cytc-1, Cytc-2) in Arabidopsis; Located between -147 and -156 from the translational starts sites;Overrepresented in the promoters of nuclear genes encoding components of the oxidative phosphorylation (OxPhos) machinery from both Arabidopsis and rice | | 56.41% |
| Matrix_378 | ATERF1 | Not Available | | 56.13% |
| Matrix_11 | TRFL5 | Not Available | | 56.09% |
| Matrix_209 | RAP2.6 | Not Available | | 55.66% |
| Motif_399 | UPRMOTIFIAT | Motif I in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc. | | 55.16% |
| Motif_641 | LRENPCABE | LRE; A positive light regulatory element in tobacco CAB (cab-E) gene; Located at -241 | | 55.10% |
| Matrix_50 | ATERF14; AT5G43410 | Not Available | | 54.89% |
| Matrix_288 | RAP2.3 | Not Available | | 54.74% |
| Matrix_473 | RRTF1 | Not Available | | 54.62% |
| Matrix_377 | AT1G75490; DREB2C; AT2G40350; AT5G18450 | Not Available | | 54.61% |
| Matrix_343 | AT2G33710 | Not Available | | 54.16% |
| Motif_65 | BS1EGCCR | BS1 (binding site 1) found in E. gunnii Cinnamoyl-CoA reductase (CCR) gene promoter; nuclear protein binding site; Required for vascular expression | | 54.14% |
| Matrix_374 | AT5G07580; AT5G61590 | Not Available | | 54.06% |
| Motif_531 | AP2SV40 | AP-2 binding site in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | | 54.01% |
| Motif_127 | SBOXATRBCS | S-box conserved in several rbcS promoters in Arabidopsis; ABI4 binding site; Important for the sugar and ABA responsiveness of CMA5 | | 53.90% |
| Matrix_79 | FUS3 | Not Available | | 53.88% |
| Matrix_234 | RAP2.3 | Not Available | | 53.81% |
| Matrix_462 | ATERF-8 | Not Available | | 53.74% |
| Matrix_138 | RRTF1 | Not Available | | 53.67% |
| Motif_454 | DRECRTCOREAT | Core motif of DRE/CRT (dehydration-responsive element/C-repeat) cis-acting element found in many genes in Arabidopsis and in rice; Os DREB1A bound to GCCGAC more preferentially than to ACCGAC whereas At DREB1A bound to both GCCGAC and ACCGAC efficiently; Maize ZmDREB1A bound to DRE; HaDREB2 in Helianthus annuus (sunflower) | | 53.53% |
| Matrix_339 | bHLH104 | Not Available | | 53.25% |
| Motif_305 | SP1SV40 | SP-1 binding site (GC box) in enhancer regions of SV40 and human metallothionein IIA (hMT IIA) | | 53.18% |
| Matrix_224 | ERF1 | Not Available | | 52.95% |
| Matrix_146 | ORA47 | Not Available | | 52.94% |
| Motif_622 | SORLIP2AT | one of Sequences Over-Represented in Light-Induced Promoters (SORLIPs) in Arabidopsis; Computationally identified phyA-induced motifs; See also all SORLIPs and also all SORLREPs; Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 52.83% |
| Motif_437 | ANAERO2CONSENSUS | One of 16 motifs found in silico in promoters of 13 anaerobic genes involved in the fermentative pathway (anaerobic set 1) | | 52.71% |
| Motif_509 | AtTINY2 | Molecular cloning, phylogenetic analysis, expressional profiling and in vitro studies of TINY2 from Arabidopsis thaliana | | 52.52% |
| Matrix_363 | RAP2.3 | Not Available | | 52.42% |
| Matrix_252 | RAP2.6 | Not Available | | 52.28% |
| Matrix_334 | AT3G23230 | Not Available | | 52.05% |
| Motif_171 | TCP binding consensus | found enriched in peaks in chip-seq data for SEP3 | | 51.81% |
| Matrix_155 | RAP2.6; ERF110; ABR1 | Not Available | | 51.58% |
| Matrix_409 | DEAR3 | Not Available | | 51.48% |
| Matrix_387 | ORA47 | Not Available | | 51.36% |
| Motif_392 | PALBOXAPC | Box A; Consensus; One of three putative cis-acting elements (boxes P, A, and L) of phenylalanine ammonia-lyase (PAL; EC 4.3.1.5) genes in parsley (P.c.); None of these elements (boxes P, A, and L) alone, or the promoter region containing all of them together, conferred elicitor or light responsiveness. These elements appear to be necessary but not sufficient for elicitor- or light-mediated PAL gene activation; See also Box P, Box L | | 51.08% |
| Motif_459 | SORLIP1 | Identification of key promoter motifs involved in the network of light-regulated gene expression by combined analysis of genomic sequence and microarray data | | 50.93% |
| Matrix_406 | ATERF-7 | Not Available | | 50.86% |
| Matrix_243 | RAP2.12; RAP2.2 | Not Available | | 50.75% |
| Matrix_190 | ATERF1 | Not Available | | 50.60% |
| Matrix_285 | DDF1 | Not Available | | 50.38% |
| Matrix_135 | ABI3 | Not Available | | 50.29% |
| Motif_274 | MYB1 binding site motif | Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein | | 50.05% |
| Motif_353 | HEXAMERATH4 | hexamer motif of Arabidopsis thaliana histone H4 promoter;Identification of cis-elements regulating the expression of an Arabidopsis histone H4 gene | | 50.02% |
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