PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_358
Name: AGL15
Description: Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Motif_105	AGL3 binding site motif	The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein	82.73%
Motif_327	AGAMOUSATCONSENSUS	Binding consensus sequence of Arabidopsis AGAMOUS MADS domain; MCM1 binding-sites in a-mating-type-specific promoters of Saccharomyces cerevisiae show similarities with the binding-site sequence of the AGAMOUS MADS domain; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development; See S000338	79.08%
Matrix_428	SEP4	Not Available	74.81%
Matrix_28	SEP1	Not Available	74.59%
Matrix_222	AGL2	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	74.59%
Matrix_2	SEP4	Not Available	74.45%
Matrix_417	SEP4	Not Available	74.45%
Matrix_310	AGL3	The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein	74.45%
Motif_110	AGATCONSENSUS	Binding consensus sequence for the product of the Arabidopsis floral homeotic gene AGAMOUS (AG); AG protein contains a region similar to the DNA binding domain of SRF and MCM1; The consensus sequence contains a CArG box; AG protein is a putative transcription factor for floral genes; MADS domain and I region of AGAMOUS are sufficient and necessary for DNA binding; Both the K domain and C region are indispensable for AG function in flower development	72.66%
Matrix_18	AP3	Not Available	72.30%
Matrix_121	SHP1	Not Available	70.00%
Matrix_386	AGL1	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	70.00%
Matrix_464	AGL15; AGL71	Not Available	69.86%
Motif_455	AG binding site motif	Nucleotide sequences recognized by the AGAMOUS MADS domain of Arabidopsis thaliana in vitro	69.69%
Matrix_43	AG	Not Available	69.49%
Matrix_98	AG	Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS	69.49%
Matrix_445	AG	Not Available	69.49%
Motif_180	AGL2 binding site motif	Binding consensus sequence of Arabidopsis AGL2 (AGAMOUS-like 2); AGL2 contains MADS domain; AGL2 binds DNA as a dimer	66.09%
Motif_6	AGL1 binding site motif	Binding consensus sequence of Arabidopsis AGL1 (AGAMOUS-like 1); AGL1 contains MADS domain; AGL20 is a MADS domain gene from Arabidopsis that is activated in shoot apical meristem during the transition to flowering; AGL20 is also regulated by the Gibberellin pathway; Complex regulatory net works involving several MADS-genes underlie development of vegetative structures	65.04%
Matrix_213	ATHB22	Not Available	58.33%
Motif_47	CARGNCAT	Noncanonical CArG motif (CC-Wx8-GG) found in the promoter region of DTA1 (AtGA2ox6); A relevant cis element for the response to AGL15 (AGAMOUS-like 15) in vivo	54.62%
Matrix_39	AP1	Not Available	54.03%
Matrix_30	AtSPL8	Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains	53.84%
Matrix_375	AtSPL8	Not Available	53.82%
Matrix_304	AtSPL3	Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains	53.70%
Matrix_51	LFY	Not Available	53.50%
Matrix_83	PRR5	Not Available	53.50%
Matrix_353	HAT5	Not Available	53.37%
Matrix_107	AtSPL3	Not Available	53.10%
Matrix_184	AGL15	Not Available	52.77%
Matrix_305	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	52.68%
Matrix_523	FUSCA3	Not Available	52.51%
Matrix_123	FUSCA3	Not Available	52.48%
Matrix_214	AP1	Not Available	52.26%
Matrix_499	ARR18	Not Available	52.16%
Matrix_205	AGL15	Not Available	52.08%
Matrix_125	AHL12	Not Available	51.52%
Motif_235	C8GCARGAT	Binding site of plant MADS-domain protein AGL15; CArG motif with a longer A/T-rich core;A variant of CArG motif, with a longer A/T-rich core; Binding site for AGL15 (AGAMOUS-like 15)	51.49%
Motif_148	CArG3 motif in AP3	CArG3 found in the Arabidopsis APETALA3 (AP3) gene promoter; Binding site of AP3/PI heterodimer; Binding site for a negatively acting factors; Binding sequence of Arabidopsis MADS domain homeotic proteins APETALA1, APETALA3, PISTILLATA, and AGAMOUS; AP1, AG, and AP3-PI complexes induce similar conformational changes on a CArG-box sequence; The CArG boxes in the promoter of the Arabidopsis floral organ identity gene APETALA3 mediate diverse regulatory effects	51.45%
Matrix_212	ATHB-12	Not Available	51.11%
Matrix_485	SVP; AGL24	Not Available	51.01%
Motif_346	SND1; VND6; VND7; NST1; NST2	Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis	51.01%
Matrix_458	MGP; AT1G14580; AtIDD7; AtIDD5; AtIDD4; AtIDD12; JKD; AT5G66730	Not Available	51.01%
Motif_449	AGL25; SVP	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis. Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis	51.00%
Matrix_149	PI	Not Available	50.63%
Matrix_414	AGL15	Not Available	50.59%
Matrix_185	AHL25	Not Available	50.52%
Matrix_29	AP1	Not Available	50.32%
Matrix_521	AHL20	Not Available	50.26%
Matrix_168	AHL25	Not Available	50.12%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	50.08%
Matrix_497	AP3	Not Available	50.07%
Motif_198	CARGATCONSENSUS	CArG consensus sequence found in the promoter of Arabidopsis SOC1 which is the MADS-box flowering-time gene; FLC is a component of the vernalization (low-temperature) pathway binds directly to this site and blocks transcriptional activation of SOC1 by CONSTANS (CO)	50.06%
Motif_44	AGL25	FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis	50.06%