PLAZA 3.0 Dicots : Binding Sites

Binding sites with simlar sequences

Binding site: Matrix_356
Name: PRR5
Description: Not Available

Positional Weight Matrix

Minimum similarity percentage

Binding site	Name	Description	Similarity
Matrix_194	HYH; HY5	Not Available	71.41%
Matrix_338	AP2	Not Available	69.95%
Matrix_118	PIF3_2	Direct targeting of light signals to a promoter element-bound transcription factor	66.36%
Matrix_345	POC1	Not Available	66.36%
Matrix_488	ABF1	Not Available	65.10%
Matrix_24	POC1	Not Available	64.11%
Matrix_15	PIF3_1	Direct targeting of light signals to a promoter element-bound transcription factor	64.11%
Matrix_342	SPL14	Identification of a Consensus DNA-Binding Site for the Arabidopsis thaliana SBP Domain Transcription Factor, AtSPL14, and Binding Kinetics by Surface Plasmon Resonance	63.79%
Matrix_49	FHY3/FAR1	Not Available	63.63%
Matrix_443	AGL15	Not Available	62.91%
Matrix_304	AtSPL3	Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains	62.86%
Matrix_121	SHP1	Not Available	62.66%
Matrix_386	AGL1	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	62.66%
Matrix_43	AG	Not Available	62.14%
Matrix_98	AG	Isolation and characterization of the binding sequences for the product of the Arabidopsis floral homeotic gene AGAMOUS	62.14%
Matrix_445	AG	Not Available	62.14%
Matrix_123	FUSCA3	Not Available	61.51%
Matrix_214	AP1	Not Available	61.03%
Matrix_359	FLC	Not Available	60.55%
Matrix_310	AGL3	The Arabidopsis MADS-box gene AGL3 is widely expressed and encodes a sequence-specific DNA-binding protein	60.52%
Matrix_2	SEP4	Not Available	60.52%
Matrix_417	SEP4	Not Available	60.52%
Matrix_28	SEP1	Not Available	60.39%
Matrix_222	AGL2	DNA binding properties of two Arabidopsis MADS domain proteins: binding consensus and dimer formation	60.39%
Matrix_428	SEP4	Not Available	60.13%
Matrix_403	BZR1	Not Available	60.10%
Matrix_191	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	59.58%
Matrix_375	AtSPL8	Not Available	58.90%
Matrix_105	SPL14	Not Available	58.70%
Matrix_250	ADAP; AT1G79700; WRI1; ANT	Not Available	58.67%
Matrix_466	PRR5	Not Available	58.31%
Matrix_95	LFY	Not Available	58.18%
Matrix_264	ATAREB1	Not Available	57.91%
Matrix_107	AtSPL3	Not Available	57.66%
Matrix_30	AtSPL8	Functional dissection of the plant-specific SBP-domain: overlap of the DNA-binding and nuclear localization domains	57.32%
Matrix_414	AGL15	Not Available	57.10%
Motif_156	HBOXPVCHS15	Binding site of two bean protein factors, KAP-1 and KAP-2; KAP-1 is a 97 kDa polypeptide; KAP-2 comprises two polypeptides of 76 kDa and 56 kDa; Elicitation of bean cell with glutathione causes a rapid increase in specific activities of KAP-1 and KAP2	56.94%
Motif_691	HBOXCONSENSUSPVCHS	H-box; Consensus sequence of H-boxes found in bean chs15 gene promoter; Essential for both light regulation and elicitor induction; Similar sequence was found in tobacco Tnt1 retrotransposon promoter (LTR); Tnt1 is induced by wounding and by abiotic stress; KAP-2 binds to the H-box and stimulates transcription from a promoter harboring the H-box; KAP-2 shares sequence similarity to the large subunit of mammalian Ku autoantigen	56.54%
Motif_180	AGL2 binding site motif	Binding consensus sequence of Arabidopsis AGL2 (AGAMOUS-like 2); AGL2 contains MADS domain; AGL2 binds DNA as a dimer	56.41%
Motif_159	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	56.39%
Motif_6	AGL1 binding site motif	Binding consensus sequence of Arabidopsis AGL1 (AGAMOUS-like 1); AGL1 contains MADS domain; AGL20 is a MADS domain gene from Arabidopsis that is activated in shoot apical meristem during the transition to flowering; AGL20 is also regulated by the Gibberellin pathway; Complex regulatory net works involving several MADS-genes underlie development of vegetative structures	56.36%
Motif_686	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	56.29%
Motif_527	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	56.14%
Motif_346	SND1; VND6; VND7; NST1; NST2	Global analysis of direct targets of secondary wall NAC master switches in Arabidopsis	56.12%
Motif_635	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	56.12%
Motif_289	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	56.04%
Motif_504	LFY	Structural basis for LEAFY floral switch function and similarity with helix-turn-helix proteins	56.02%
Matrix_133	DYT1	Not Available	55.09%
Matrix_305	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	54.62%
Matrix_485	SVP; AGL24	Not Available	54.55%
Matrix_77	PRR5	Not Available	54.52%
Matrix_104	PI	Not Available	54.24%
Motif_30	HSELIKENTACIDICPR1	HSE-like motif in -56 region of acidic PR1 gene of tobacco; not found in basic PR1 gene	54.16%
Matrix_459	ATHB9; CNA; PHB; ATHB-8; REV	Not Available	53.87%
Matrix_468	ATHB9	The Arabidopsis Athb-8, -9 and -14 genes are members of a small gene family coding for highly related HD-ZIP proteins	53.87%
Matrix_381	ATHB9	Not Available	53.87%
Matrix_498	AT2G28710; AT3G46070; AT3G46080; ZAT7	Not Available	53.77%
Motif_689	ANAC092	NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis	53.52%
Matrix_369	AT2G18300	Not Available	53.50%
Matrix_514	DYT1	Regulation of the Arabidopsis anther transcriptome by DYT1 for pollen development	53.27%
Matrix_55	PIF3	Not Available	52.24%
Matrix_108	PIF4	Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses	52.19%
Matrix_358	AGL15	Binding site selection for the plant MADS domain protein AGL15: an in vitro and in vivo study	51.86%
Matrix_438	AtbZIP63	Not Available	51.77%
Matrix_192	FHY3/FAR1	Not Available	51.49%
Matrix_251	PIF5	Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling	51.10%
Motif_134	ANAC092	NAC Transcription Factor ORE1 and Senescence-Induced BIFUNCTIONAL NUCLEASE1 (BFN1) Constitute a Regulatory Cascade in Arabidopsis	51.02%
Matrix_499	ARR18	Not Available	50.87%
Matrix_153	AP2	Not Available	50.82%
Motif_303	VOZATVPP	VOZ-binding sequence found in the promoter of A. thaliana V-PPase (vacuolar H+-pyrophosphatase) gene; Involved in its expression during pollen development; one-zinc finger	50.51%
Matrix_217	BES1	A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana	50.41%
Motif_79	UPRMOTIFIIAT	Motif II in the conserved UPR (unfolded protein response) cis-acting element in Arabidopsis genes coding for SAR1B, HSP-90, SBR-like, Ca-ATPase 4, CNX1, PDI, etc	50.28%
Matrix_477	RAV1	Not Available	50.20%
Matrix_467	RAV1	Not Available	50.20%
Matrix_34	RAV1_2	RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants	50.20%