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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Family
HOM02SEM000622
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
pte434210
Paramecium tetraurelia
pte785460
Paramecium tetraurelia
pte436800
Paramecium tetraurelia
pte126800
Paramecium tetraurelia
pte465700
Paramecium tetraurelia
AA0024G00200
Aureococcus anophagefferens
WBGene00018995
Caenorhabditis elegans
pte408580
Paramecium tetraurelia
pte319890
Paramecium tetraurelia
pte463020
Paramecium tetraurelia
AA0016G01560
Aureococcus anophagefferens
Cre02.g102850
Chlamydomonas reinhardtii
WBGene00017136
Caenorhabditis elegans
Ec-00_007300
Ectocarpus siliculosus
pte754060
Paramecium tetraurelia
pte15990
Paramecium tetraurelia
pte218490
Paramecium tetraurelia
pte674870
Paramecium tetraurelia
pte288460
Paramecium tetraurelia
pte157800
Paramecium tetraurelia
pte622160
Paramecium tetraurelia
pte21210
Paramecium tetraurelia
emh255650
Emiliania huxleyi
pte707100
Paramecium tetraurelia
pte779620
Paramecium tetraurelia
pte235080
Paramecium tetraurelia
pte577730
Paramecium tetraurelia
Ec-01_007980
Ectocarpus siliculosus
ENSG00000166748
Homo sapiens
Cre13.g572850
Chlamydomonas reinhardtii
pte512960
Paramecium tetraurelia
pte418310
Paramecium tetraurelia
pte541530
Paramecium tetraurelia
pte228760
Paramecium tetraurelia
Ec-11_006110
Ectocarpus siliculosus
ENSG00000165923
Homo sapiens
pte501940
Paramecium tetraurelia
ENSG00000146856
Homo sapiens
pte187620
Paramecium tetraurelia
pte181440
Paramecium tetraurelia
pte449010
Paramecium tetraurelia
pte413720
Paramecium tetraurelia
ENSG00000135049
Homo sapiens
pte267230
Paramecium tetraurelia
emh712530
Emiliania huxleyi
AA0020G01370
Aureococcus anophagefferens
Cre12.g528100
Chlamydomonas reinhardtii
FBgn0051019
Drosophila melanogaster
pte81420
Paramecium tetraurelia
pte224070
Paramecium tetraurelia
pte779600
Paramecium tetraurelia
Ec-14_002450
Ectocarpus siliculosus
Ec-01_007970
Ectocarpus siliculosus
ENSG00000084693
Homo sapiens
AA0005G05090
Aureococcus anophagefferens
pte428270
Paramecium tetraurelia
pte168410
Paramecium tetraurelia
pte650870
Paramecium tetraurelia
ENSG00000186094
Homo sapiens
AA0001G04240
Aureococcus anophagefferens
pte722760
Paramecium tetraurelia
FBgn0265726
Drosophila melanogaster
pte228740
Paramecium tetraurelia
pte84580
Paramecium tetraurelia
pte282430
Paramecium tetraurelia
pte176250
Paramecium tetraurelia
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (5 genes)
Ectocarpus siliculosus (5 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (6 genes)
Drosophila melanogaster (2 genes)
Caenorhabditis elegans (2 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (2 genes)
Paramecium tetraurelia (41 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (3 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Genes only
Positions and Genes
No editing