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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
tps224730
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
tps224730
Thalassiosira pseudonana
3.3e-306
1051.6
525
100.0
tho88780
Thalassiosira oceanica
2.1e-180
633.6
518
62.5
sya00G102750
Synedra acus
5.8e-162
572.4
513
56.3
CC00G134610
Cyclotella cryptica
1.3e-153
544.7
351
75.2
fso93470
Fistulifera solaris
1.3e-153
544.7
524
53.6
fso158920
Fistulifera solaris
8.4e-153
542.0
522
54.0
Sro937_g222220
Seminavis robusta
5.4e-152
539.3
524
51.9
PSNMU-V1.4_AUG-EV-PASAV3_0116580
Pseudo-nitzschia multistriata
1.6e-151
537.7
527
52.4
ptri152360
Phaeodactylum tricornutum
1.4e-147
524.6
527
51.2
Cre17.g734900
Chlamydomonas reinhardtii
3.8e-105
383.6
547
39.9
ccr21440
Chondrus crispus
5.0e-105
383.3
526
41.6
Ec-24_001420
Ectocarpus siliculosus
3.1e-99
364.0
531
39.0
Naga_100859g1
Nannochloropsis gaditana
3.5e-98
360.5
542
39.9
AA0012G02510
Aureococcus anophagefferens
4.2e-96
353.6
527
38.5
emh596280
Emiliania huxleyi
1.4e-91
338.6
543
39.0
gene10083
Fragilariopsis cylindrus
1.6e-71
271.9
216
59.3
gene9478
Fragilariopsis cylindrus
3.2e-51
204.5
216
48.6
CC00G99810
Cyclotella cryptica
1.7e-20
102.4
93
62.4
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (2 genes)
Cyclotella cryptica (2 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (1 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (1 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
No editing