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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
tho62000
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
tho62000
Thalassiosira oceanica
0.0e+00
1100.9
606
100.0
tps61090
Thalassiosira pseudonana
7.6e-73
276.6
569
36.2
ptri146910
Phaeodactylum tricornutum
2.4e-58
228.4
424
36.1
gene2404
Fragilariopsis cylindrus
1.4e-55
219.2
437
34.1
CC00G148070
Cyclotella cryptica
5.5e-55
217.2
498
34.3
Sro1514_g278870
Seminavis robusta
2.1e-54
215.3
471
32.9
sya00G74360
Synedra acus
2.1e-54
215.3
481
32.6
fso66730
Fistulifera solaris
1.8e-53
212.2
433
35.1
PSNMU-V1.4_AUG-EV-PASAV3_0043260
Pseudo-nitzschia multistriata
1.8e-53
212.2
525
33.0
fso174960
Fistulifera solaris
1.9e-52
208.8
466
33.7
ps00G182860
Pseudo-nitzschia multiseries
1.4e-31
139.4
630
26.0
gsu141210
Galdieria sulphuraria
6.8e-13
77.4
264
29.2
Naga_100154g2
Nannochloropsis gaditana
6.8e-13
77.4
439
24.8
Ec-04_000140
Ectocarpus siliculosus
1.5e-12
76.3
440
23.6
AT2G47210
Arabidopsis thaliana
2.8e-11
72.0
412
23.8
ENSG00000178028
Homo sapiens
3.7e-11
71.6
150
39.3
FBgn0034537
Drosophila melanogaster
1.8e-10
69.3
126
31.0
fso60760
Fistulifera solaris
5.3e-10
67.8
89
42.7
Pp3c1_35180
Physcomitrella patens
2.0e-09
65.9
147
29.3
Pp3c2_4040
Physcomitrella patens
1.3e-08
63.2
125
27.2
emh738150
Emiliania huxleyi
1.2e-06
56.6
129
31.8
CC00G173070
Cyclotella cryptica
8.0e-06
53.9
37
73.0
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (3 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (2 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (1 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (1 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (1 genes)
Physcomitrella patens (2 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
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