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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
tho119280
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
tho119280
Thalassiosira oceanica
0.0e+00
1471.1
760
100.0
tho225040
Thalassiosira oceanica
9.1e-233
808.1
459
86.7
tho24160
Thalassiosira oceanica
4.5e-131
470.3
472
53.6
tho207000
Thalassiosira oceanica
3.9e-119
430.6
405
55.8
tho02320
Thalassiosira oceanica
1.3e-98
362.5
386
48.4
tho146100
Thalassiosira oceanica
7.2e-97
356.7
379
47.5
CC00G28500
Cyclotella cryptica
2.0e-94
348.6
394
47.2
CC00G139280
Cyclotella cryptica
2.6e-94
348.2
387
47.5
CC00G110590
Cyclotella cryptica
4.4e-94
347.4
388
46.4
tho269800
Thalassiosira oceanica
6.3e-93
343.6
390
45.9
tho31100
Thalassiosira oceanica
4.1e-92
340.9
385
44.7
CC00G67280
Cyclotella cryptica
9.1e-92
339.7
387
46.3
CC00G183890
Cyclotella cryptica
2.0e-91
338.6
386
45.1
tho113620
Thalassiosira oceanica
1.6e-88
328.9
390
43.1
CC00G87590
Cyclotella cryptica
8.9e-87
323.2
390
45.4
tho15640
Thalassiosira oceanica
3.5e-75
284.6
362
42.0
tho429360
Thalassiosira oceanica
8.9e-71
270.0
269
52.0
tho373780
Thalassiosira oceanica
1.9e-52
209.1
119
95.0
CC00G177980
Cyclotella cryptica
7.3e-41
170.6
222
42.3
tho583900
Thalassiosira oceanica
1.3e-32
143.3
118
61.0
tho313680
Thalassiosira oceanica
1.0e-29
133.7
142
48.6
tho115580
Thalassiosira oceanica
1.1e-28
130.2
194
39.2
tho262780
Thalassiosira oceanica
5.1e-26
121.3
137
56.2
tho518860
Thalassiosira oceanica
1.1e-25
120.2
68
89.7
CC00G14190
Cyclotella cryptica
2.5e-25
119.0
139
43.9
tps191670
Thalassiosira pseudonana
7.4e-25
117.5
109
50.5
tho620840
Thalassiosira oceanica
1.8e-23
112.8
143
43.4
tho504420
Thalassiosira oceanica
1.2e-22
110.2
126
44.4
tho537020
Thalassiosira oceanica
4.6e-19
98.2
95
58.9
Sro11_g008601
Seminavis robusta
3.0e-18
95.5
169
30.8
CC00G110470
Cyclotella cryptica
4.1e-15
85.1
68
55.9
tho477800
Thalassiosira oceanica
6.9e-15
84.3
270
26.3
Naga_101002g3
Nannochloropsis gaditana
9.0e-15
84.0
361
23.3
Ec-05_005370
Ectocarpus siliculosus
1.5e-14
83.2
359
22.3
Ec-12_008930
Ectocarpus siliculosus
2.6e-14
82.4
359
22.3
tho217400
Thalassiosira oceanica
5.9e-14
81.3
270
28.9
tho333380
Thalassiosira oceanica
1.1e-12
77.0
264
27.3
tho163240
Thalassiosira oceanica
4.2e-12
75.1
403
24.1
tho490840
Thalassiosira oceanica
2.1e-11
72.8
129
31.8
tho158000
Thalassiosira oceanica
3.6e-11
72.0
215
28.4
CC00G68530
Cyclotella cryptica
1.4e-10
70.1
243
28.4
sya00G35570
Synedra acus
3.0e-10
68.9
341
23.8
ccr58100
Chondrus crispus
1.5e-09
66.6
130
32.3
CC00G56090
Cyclotella cryptica
2.5e-09
65.9
243
27.6
sya00G45490
Synedra acus
4.3e-09
65.1
358
22.9
sya00G236680
Synedra acus
4.3e-09
65.1
358
22.9
sya00G247220
Synedra acus
4.3e-09
65.1
358
22.9
tho56660
Thalassiosira oceanica
2.2e-08
62.8
360
23.1
tho329240
Thalassiosira oceanica
2.2e-08
62.8
128
31.2
ccr162000
Chondrus crispus
3.7e-08
62.0
352
22.7
CC00G47840
Cyclotella cryptica
6.3e-08
61.2
300
24.3
CC00G75400
Cyclotella cryptica
6.3e-08
61.2
300
24.3
CC00G159220
Cyclotella cryptica
6.3e-08
61.2
242
26.4
tho01120
Thalassiosira oceanica
6.3e-08
61.2
238
26.1
tho293920
Thalassiosira oceanica
6.3e-08
61.2
360
23.9
CC00G118720
Cyclotella cryptica
8.2e-08
60.8
243
26.3
tho26600
Thalassiosira oceanica
8.2e-08
60.8
215
26.5
tho139880
Thalassiosira oceanica
8.2e-08
60.8
214
25.7
CC00G92410
Cyclotella cryptica
1.4e-07
60.1
231
28.1
Ec-07_000280
Ectocarpus siliculosus
1.4e-07
60.1
345
22.0
tho59300
Thalassiosira oceanica
1.4e-07
60.1
331
25.4
tho338540
Thalassiosira oceanica
1.4e-07
60.1
357
23.5
ccr158720
Chondrus crispus
2.4e-07
59.3
154
31.2
ccr121940
Chondrus crispus
4.1e-07
58.5
154
31.2
Ec-21_000440
Ectocarpus siliculosus
6.9e-07
57.8
126
28.6
ccr170160
Chondrus crispus
9.1e-07
57.4
154
30.5
tho418560
Thalassiosira oceanica
9.1e-07
57.4
240
26.7
ccr33040
Chondrus crispus
1.2e-06
57.0
157
28.0
Sro1693_g291681
Seminavis robusta
1.5e-06
56.6
158
25.3
CC00G177010
Cyclotella cryptica
2.0e-06
56.2
243
25.9
ps00G111280
Pseudo-nitzschia multiseries
2.6e-06
55.8
45
51.1
ccr46400
Chondrus crispus
5.9e-06
54.7
154
29.9
Pp3c13_150
Physcomitrella patens
7.7e-06
54.3
238
23.1
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (35 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (17 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (4 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (7 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (2 genes)
Synedra acus (4 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing