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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
sya00G66650
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
sya00G66650
Synedra acus
5.1e-109
395.2
212
100.0
sya00G66660
Synedra acus
5.1e-109
395.2
212
100.0
CC00G159510
Cyclotella cryptica
1.1e-58
228.0
195
60.5
tps208450
Thalassiosira pseudonana
9.2e-58
224.9
198
61.6
tho290880
Thalassiosira oceanica
4.7e-54
212.6
201
57.7
Sro1247_g255840
Seminavis robusta
1.4e-50
201.1
191
55.0
ptri180750
Phaeodactylum tricornutum
2.4e-50
200.3
208
53.4
fso116180
Fistulifera solaris
3.2e-50
199.9
200
55.5
fso25330
Fistulifera solaris
7.0e-50
198.7
200
55.0
ps00G01800
Pseudo-nitzschia multiseries
3.5e-49
196.4
219
53.9
gene14016
Fragilariopsis cylindrus
4.0e-45
183.0
225
49.8
tho603300
Thalassiosira oceanica
1.4e-29
131.3
128
56.2
FBgn0016691
Drosophila melanogaster
5.8e-28
125.9
175
39.4
AA0011G01800
Aureococcus anophagefferens
1.2e-25
118.2
197
40.1
ENSG00000241837
Homo sapiens
1.2e-25
118.2
181
37.0
Pp3c21_13430
Physcomitrella patens
3.9e-24
113.2
176
33.0
Pp3c21_15430
Physcomitrella patens
8.7e-24
112.1
176
33.0
WBGene00000230
Caenorhabditis elegans
2.8e-22
107.1
198
32.8
SPCC1840.06
Schizosaccharomyces pombe
4.0e-21
103.2
188
37.2
Pp3c11_16260
Physcomitrella patens
9.9e-20
98.6
181
32.6
YDR298C
Saccharomyces cerevisiae strain S288C
5.4e-18
92.8
183
30.1
emh315740
Emiliania huxleyi
7.8e-17
89.0
183
32.2
AT5G13450
Arabidopsis thaliana
2.5e-15
84.0
178
28.1
pte150650
Paramecium tetraurelia
3.3e-15
83.6
178
32.6
pte347800
Paramecium tetraurelia
5.6e-15
82.8
178
32.0
pte391730
Paramecium tetraurelia
5.6e-15
82.8
178
32.0
CM05G01980
Cyanidioschyzon merolae
6.2e-14
79.3
175
31.4
CM07G00040
Cyanidioschyzon merolae
6.2e-14
79.3
175
31.4
sya00G10830
Synedra acus
6.2e-14
79.3
171
29.2
pte120150
Paramecium tetraurelia
8.1e-14
79.0
178
30.9
ccr147380
Chondrus crispus
9.0e-13
75.5
173
26.6
ENSG00000249209
Homo sapiens
4.5e-12
73.2
120
39.2
sya00G268780
Synedra acus
5.8e-12
72.8
173
28.9
syaC00790
Synedra acus
3.5e-09
63.5
169
29.0
gsu_chlor00G01060
Galdieria sulphuraria
4.6e-09
63.2
163
25.2
gsu28270
Galdieria sulphuraria
1.0e-08
62.0
154
27.9
Cre16.g680000
Chlamydomonas reinhardtii
1.3e-08
61.6
185
25.4
ccr_chlor00G01450
Chondrus crispus
2.5e-07
57.4
169
26.6
Pp3c23_6060
Physcomitrella patens
6.2e-06
52.8
170
27.1
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (2 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (2 genes)
Drosophila melanogaster (1 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (1 genes)
Schizosaccharomyces pombe (1 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (2 genes)
Chondrus crispus (2 genes)
Galdieria sulphuraria (2 genes)
Emiliania huxleyi (1 genes)
Paramecium tetraurelia (4 genes)
Seminavis robusta (1 genes)
Synedra acus (5 genes)
Physcomitrella patens (4 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing