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Interactive Phylogenetics Module
BLAST
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Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
sya00G187140
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
sya00G187140
Synedra acus
6.3e-91
334.7
164
100.0
sya00G185950
Synedra acus
4.3e-79
295.4
153
94.1
tho329240
Thalassiosira oceanica
1.8e-29
130.6
147
45.6
sya00G259020
Synedra acus
1.9e-18
94.0
67
67.2
Sro52_g031241
Seminavis robusta
3.0e-16
86.7
124
41.1
sya00G59780
Synedra acus
3.0e-16
86.7
141
34.0
sya00G59300
Synedra acus
2.2e-14
80.5
147
29.3
sya00G49690
Synedra acus
6.3e-14
79.0
141
29.8
sya00G62260
Synedra acus
1.4e-13
77.8
141
31.9
sya00G206160
Synedra acus
4.1e-13
76.3
129
34.9
sya00G60900
Synedra acus
4.5e-12
72.8
136
32.4
sya00G180660
Synedra acus
5.9e-12
72.4
152
28.3
sya00G256650
Synedra acus
1.1e-10
68.2
76
43.4
sya00G96720
Synedra acus
1.9e-10
67.4
59
55.9
CC00G45850
Cyclotella cryptica
2.1e-09
63.9
135
30.4
fso79470
Fistulifera solaris
6.1e-09
62.4
146
31.5
fso200820
Fistulifera solaris
6.1e-09
62.4
146
31.5
PSNMU-V1.4_AUG-EV-PASAV3_0001900
Pseudo-nitzschia multistriata
1.4e-08
61.2
154
24.7
sya00G222220
Synedra acus
1.4e-08
61.2
62
48.4
PSNMU-V1.4_AUG-EV-PASAV3_0006560
Pseudo-nitzschia multistriata
2.3e-08
60.5
149
27.5
fso120110
Fistulifera solaris
5.1e-08
59.3
141
29.1
PSNMU-V1.4_AUG-EV-PASAV3_0011870
Pseudo-nitzschia multistriata
1.5e-07
57.8
144
28.5
sya00G268070
Synedra acus
1.5e-07
57.8
44
63.6
CC00G178130
Cyclotella cryptica
9.7e-07
55.1
98
33.7
CC00G45280
Cyclotella cryptica
4.8e-06
52.8
159
24.5
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (3 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (3 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (14 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (3 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing