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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
gene2601
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
gene2601
Fragilariopsis cylindrus
2.9e-161
569.7
411
100.0
PSNMU-V1.4_AUG-EV-PASAV3_0116160
Pseudo-nitzschia multistriata
2.0e-77
291.2
339
49.3
ps00G196670
Pseudo-nitzschia multiseries
2.2e-76
287.7
323
56.0
fso73630
Fistulifera solaris
1.6e-61
238.4
326
42.6
fso199520
Fistulifera solaris
4.5e-61
236.9
320
42.8
ptri69820
Phaeodactylum tricornutum
1.3e-60
235.3
334
41.3
Sro695_g188670
Seminavis robusta
7.2e-59
229.6
310
43.5
sya00G248100
Synedra acus
1.2e-45
185.7
316
35.8
CC00G33540
Cyclotella cryptica
3.3e-43
177.6
370
32.4
CC00G194410
Cyclotella cryptica
3.3e-43
177.6
370
32.4
tps127790
Thalassiosira pseudonana
3.3e-43
177.6
363
32.8
Ec-28_000580
Ectocarpus siliculosus
2.8e-42
174.5
312
34.9
Naga_100048g13
Nannochloropsis gaditana
3.1e-38
161.0
316
36.4
ccr91460
Chondrus crispus
9.2e-38
159.5
326
34.0
gsu11120
Galdieria sulphuraria
1.2e-32
142.5
305
33.4
Sro1648_g288430
Seminavis robusta
3.7e-31
137.5
100
62.0
CM15G02090
Cyanidioschyzon merolae
2.7e-29
131.3
336
29.2
Pp3c3_30980
Physcomitrella patens
1.2e-24
115.9
302
32.1
emh660710
Emiliania huxleyi
2.6e-24
114.8
99
56.6
emh545810
Emiliania huxleyi
2.6e-24
114.8
99
56.6
Sro695_g188760
Seminavis robusta
1.1e-22
109.4
100
50.0
Pp3c1_24560
Physcomitrella patens
2.5e-19
98.2
103
48.5
AA0013G02430
Aureococcus anophagefferens
3.3e-19
97.8
79
54.4
Cre12.g493150
Chlamydomonas reinhardtii
1.2e-18
95.9
301
29.9
emh276330
Emiliania huxleyi
1.6e-18
95.5
284
31.7
emh268560
Emiliania huxleyi
1.6e-18
95.5
284
31.7
AT4G35760
Arabidopsis thaliana
1.1e-17
92.8
100
49.0
Sro573_g169050
Seminavis robusta
4.9e-15
84.0
107
41.1
sya00G224570
Synedra acus
1.1e-14
82.8
113
36.3
emh602500
Emiliania huxleyi
1.4e-14
82.4
90
44.4
emh91680
Emiliania huxleyi
1.4e-14
82.4
90
44.4
ptri21250
Phaeodactylum tricornutum
1.4e-14
82.4
106
43.4
sya00G243600
Synedra acus
2.4e-14
81.6
111
36.9
tps158700
Thalassiosira pseudonana
5.4e-14
80.5
98
44.9
CC00G106710
Cyclotella cryptica
2.7e-13
78.2
95
41.1
emh602480
Emiliania huxleyi
1.5e-11
72.4
99
41.4
emh91700
Emiliania huxleyi
1.5e-11
72.4
99
41.4
ps00G90540
Pseudo-nitzschia multiseries
2.0e-08
62.0
79
41.8
gene3438
Fragilariopsis cylindrus
4.4e-08
60.8
80
40.0
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (2 genes)
Thalassiosira pseudonana (2 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (2 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (2 genes)
Cyclotella cryptica (3 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (8 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (4 genes)
Synedra acus (3 genes)
Physcomitrella patens (2 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing