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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
gene13040
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
gene16872
Fragilariopsis cylindrus
2.9e-55
215.7
109
100.0
gene13040
Fragilariopsis cylindrus
2.9e-55
215.7
109
100.0
ps00G172810
Pseudo-nitzschia multiseries
3.7e-55
215.3
109
99.1
ptri127180
Phaeodactylum tricornutum
1.6e-53
209.9
109
96.3
fso108990
Fistulifera solaris
2.7e-53
209.1
109
95.4
Sro281_g107280
Seminavis robusta
6.0e-53
208.0
109
94.5
Sro2062_g313040
Seminavis robusta
6.0e-53
208.0
109
94.5
fso86310
Fistulifera solaris
3.9e-52
205.3
109
94.5
CC00G201970
Cyclotella cryptica
6.6e-52
204.5
109
93.6
tps120590
Thalassiosira pseudonana
8.6e-52
204.1
109
92.7
sya00G106980
Synedra acus
2.0e-40
166.4
109
74.3
sya00G249320
Synedra acus
1.7e-39
163.3
109
72.5
sya00G93400
Synedra acus
8.6e-36
151.0
109
67.0
Ec-16_000700
Ectocarpus siliculosus
2.1e-26
119.8
109
49.5
Naga_100001g62
Nannochloropsis gaditana
2.2e-23
109.8
109
51.4
Naga_100008g49
Nannochloropsis gaditana
8.4e-23
107.8
109
49.5
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (2 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (2 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (2 genes)
Synedra acus (3 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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