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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
fso87400
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
fso87400
Fistulifera solaris
1.1e-146
520.8
283
100.0
fso202720
Fistulifera solaris
4.1e-114
412.5
279
78.9
fso186580
Fistulifera solaris
1.1e-93
344.7
236
71.2
sya00G14570
Synedra acus
4.5e-28
126.7
227
33.9
fso109400
Fistulifera solaris
9.8e-23
109.0
234
28.2
fso63240
Fistulifera solaris
6.8e-16
86.3
194
29.9
fso85840
Fistulifera solaris
2.0e-15
84.7
238
27.3
sya00G234880
Synedra acus
2.2e-14
81.3
196
25.5
sya00G178340
Synedra acus
2.4e-13
77.8
238
24.8
sya00G171150
Synedra acus
2.7e-12
74.3
238
25.6
sya00G96210
Synedra acus
2.3e-11
71.2
237
24.9
sya00G96250
Synedra acus
2.3e-11
71.2
237
24.9
sya00G109280
Synedra acus
2.3e-11
71.2
237
24.9
sya00G213030
Synedra acus
2.3e-11
71.2
237
24.9
sya00G89520
Synedra acus
3.9e-11
70.5
234
25.2
PSNMU-V1.4_AUG-EV-PASAV3_0061400
Pseudo-nitzschia multistriata
6.2e-09
63.2
182
25.8
Sro1139_g245450
Seminavis robusta
6.8e-08
59.7
245
20.8
Sro532_g161440
Seminavis robusta
1.2e-07
58.9
194
25.3
Sro336_g120260
Seminavis robusta
1.3e-06
55.5
248
24.2
Sro2166_g317270
Seminavis robusta
1.3e-06
55.5
198
24.7
sya00G157380
Synedra acus
2.9e-06
54.3
186
24.2
CC00G103300
Cyclotella cryptica
6.4e-06
53.1
167
23.4
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (6 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (4 genes)
Synedra acus (10 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
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