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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
Ec-14_004510
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
Ec-14_004510
Ectocarpus siliculosus
0.0e+00
1100.9
662
100.0
Ec-12_006930
Ectocarpus siliculosus
9.0e-35
150.2
194
43.3
emh622940
Emiliania huxleyi
3.8e-33
144.8
210
43.3
Naga_100040g9
Nannochloropsis gaditana
2.3e-30
135.6
185
42.7
Sro43_g026420
Seminavis robusta
2.0e-26
122.5
197
38.6
CC00G203530
Cyclotella cryptica
4.5e-26
121.3
191
39.8
ptri149940
Phaeodactylum tricornutum
1.3e-25
119.8
210
38.1
tps95980
Thalassiosira pseudonana
8.4e-25
117.1
175
39.4
sya00G05520
Synedra acus
1.4e-24
116.3
203
34.5
Sro2_g001760
Seminavis robusta
1.6e-23
112.8
239
34.3
CM19G02490
Cyanidioschyzon merolae
5.1e-22
107.8
186
37.6
Sro215_g089000
Seminavis robusta
5.1e-22
107.8
217
34.6
gene10412
Fragilariopsis cylindrus
6.7e-22
107.5
214
33.2
fso12460
Fistulifera solaris
4.3e-21
104.8
197
36.5
ccr48820
Chondrus crispus
1.3e-20
103.2
237
35.9
ptri122480
Phaeodactylum tricornutum
1.3e-20
103.2
236
36.0
PSNMU-V1.4_AUG-EV-PASAV3_0003480
Pseudo-nitzschia multistriata
1.6e-20
102.8
173
39.3
Naga_100343g4
Nannochloropsis gaditana
2.8e-20
102.1
87
56.3
CC00G91370
Cyclotella cryptica
8.1e-20
100.5
218
34.4
CC00G140700
Cyclotella cryptica
8.1e-20
100.5
218
34.4
fso75110
Fistulifera solaris
8.1e-20
100.5
192
36.5
Cre09.g388763
Chlamydomonas reinhardtii
1.1e-19
100.1
185
33.5
gene11288
Fragilariopsis cylindrus
4.5e-18
94.7
170
35.9
sya00G13150
Synedra acus
5.8e-18
94.4
187
34.2
ps00G74010
Pseudo-nitzschia multiseries
9.9e-18
93.6
172
39.0
PSNMU-V1.4_AUG-EV-PASAV3_0005210
Pseudo-nitzschia multistriata
2.2e-17
92.4
206
34.0
gene19060
Fragilariopsis cylindrus
2.9e-17
92.0
205
33.7
gsu103730
Galdieria sulphuraria
4.9e-17
91.3
184
34.2
tho258200
Thalassiosira oceanica
3.2e-16
88.6
113
40.7
ps00G25150
Pseudo-nitzschia multiseries
5.5e-16
87.8
249
29.3
sya00G195750
Synedra acus
4.6e-15
84.7
166
35.5
tps183370
Thalassiosira pseudonana
7.9e-15
84.0
194
33.0
CC00G87790
Cyclotella cryptica
1.3e-14
83.2
102
48.0
ps00G105280
Pseudo-nitzschia multiseries
6.7e-14
80.9
97
46.4
tps156480
Thalassiosira pseudonana
1.5e-13
79.7
97
44.3
PSNMU-V1.4_AUG-EV-PASAV3_0012920
Pseudo-nitzschia multistriata
1.8e-11
72.8
205
32.7
tho176280
Thalassiosira oceanica
1.2e-07
60.1
79
41.8
tho182180
Thalassiosira oceanica
6.0e-07
57.8
160
30.6
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (2 genes)
Thalassiosira pseudonana (3 genes)
Thalassiosira oceanica (3 genes)
Pseudo-nitzschia multiseries (3 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (3 genes)
Cyclotella cryptica (4 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (2 genes)
Nannochloropsis gaditana (2 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (1 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (1 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (3 genes)
Synedra acus (3 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (3 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing