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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
CC00G187140
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
CC00G187140
Cyclotella cryptica
3.4e-300
1031.6
515
100.0
tho213260
Thalassiosira oceanica
1.9e-69
265.0
462
38.1
Sro88_g046430
Seminavis robusta
3.1e-35
151.4
497
27.2
ps00G149570
Pseudo-nitzschia multiseries
3.0e-30
134.8
506
27.7
sya00G03000
Synedra acus
4.5e-26
120.9
490
23.9
Naga_100978g1
Nannochloropsis gaditana
3.7e-20
101.3
394
26.9
gsu44180
Galdieria sulphuraria
1.5e-16
89.4
364
25.3
ccr74260
Chondrus crispus
1.7e-12
75.9
249
26.5
AT3G04460
Arabidopsis thaliana
1.4e-11
72.8
394
25.4
Cre06.g263602
Chlamydomonas reinhardtii
1.7e-09
65.9
393
23.9
Ec-18_002190
Ectocarpus siliculosus
8.6e-09
63.5
236
25.4
fso189550
Fistulifera solaris
1.1e-08
63.2
308
24.4
fso167300
Fistulifera solaris
1.6e-07
59.3
298
26.2
Pp3c17_6400
Physcomitrella patens
2.8e-07
58.5
419
23.2
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (1 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (1 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (1 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (1 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
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