Toggle navigation
Data
Overview
Download
Analyze
Gene families
Expansion_plot
Gene family finder
Synteny plot
Colinearity
Ks-graphs
Skyline plot
WGDotplot
Colinear region finder
Localization
Functional clusters
WGMapping
Other
Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
CC00G139380
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
CC00G139380
Cyclotella cryptica
0.0e+00
1720.7
821
100.0
CC00G118720
Cyclotella cryptica
0.0e+00
1456.8
835
83.0
CC00G159220
Cyclotella cryptica
0.0e+00
1437.9
821
84.5
CC00G92410
Cyclotella cryptica
0.0e+00
1343.9
822
77.0
CC00G68530
Cyclotella cryptica
0.0e+00
1317.8
826
75.8
CC00G07980
Cyclotella cryptica
0.0e+00
1176.8
820
69.8
CC00G151980
Cyclotella cryptica
4.0e-258
892.5
622
67.7
tho158000
Thalassiosira oceanica
1.1e-244
847.8
877
50.3
tho26600
Thalassiosira oceanica
9.8e-241
834.7
849
50.4
tho139880
Thalassiosira oceanica
3.1e-239
829.7
864
50.0
tho01120
Thalassiosira oceanica
3.3e-236
819.7
861
50.3
tho163240
Thalassiosira oceanica
3.1e-226
786.6
848
49.6
CC00G56080
Cyclotella cryptica
1.7e-221
770.8
509
71.7
tho59300
Thalassiosira oceanica
3.6e-211
736.5
855
46.5
CC00G47840
Cyclotella cryptica
6.9e-202
705.7
853
45.3
CC00G75400
Cyclotella cryptica
6.9e-202
705.7
853
45.3
CC00G210670
Cyclotella cryptica
3.4e-201
703.4
562
61.4
CC00G62800
Cyclotella cryptica
1.6e-158
561.6
292
92.1
tho418560
Thalassiosira oceanica
5.5e-151
536.6
571
49.4
PSNMU-V1.4_AUG-EV-PASAV3_0022040
Pseudo-nitzschia multistriata
9.5e-127
456.1
845
35.1
PSNMU-V1.4_AUG-EV-PASAV3_0089660
Pseudo-nitzschia multistriata
1.6e-126
455.3
847
35.4
CC00G38470
Cyclotella cryptica
5.2e-117
423.7
270
74.8
CC00G148530
Cyclotella cryptica
8.9e-101
369.8
327
53.8
CC00G56090
Cyclotella cryptica
5.2e-93
344.0
218
75.2
PSNMU-V1.4_AUG-EV-PASAV3_0020960
Pseudo-nitzschia multistriata
3.4e-84
314.7
849
30.3
fso12240
Fistulifera solaris
1.1e-74
283.1
842
27.8
CC00G177010
Cyclotella cryptica
1.1e-69
266.5
152
82.9
ccr162020
Chondrus crispus
7.7e-28
127.5
452
25.4
ps00G11210
Pseudo-nitzschia multiseries
2.2e-27
125.9
170
42.4
ccr162420
Chondrus crispus
1.1e-26
123.6
452
25.0
ccr162000
Chondrus crispus
5.2e-24
114.8
474
24.5
Pp3c7_15950
Physcomitrella patens
1.2e-23
113.6
830
22.8
ps00G140070
Pseudo-nitzschia multiseries
3.4e-23
112.1
452
24.8
Ec-05_005370
Ectocarpus siliculosus
4.4e-23
111.7
401
24.2
Ec-12_008930
Ectocarpus siliculosus
4.4e-23
111.7
401
24.2
Naga_100497g3
Nannochloropsis gaditana
7.5e-23
110.9
406
25.1
tho228620
Thalassiosira oceanica
8.3e-22
107.5
202
38.1
Naga_101065g1
Nannochloropsis gaditana
1.8e-21
106.3
408
25.0
Naga_100055g1
Nannochloropsis gaditana
4.1e-21
105.1
407
24.6
Naga_101002g3
Nannochloropsis gaditana
1.2e-20
103.6
407
24.6
tho113620
Thalassiosira oceanica
2.9e-19
99.0
433
22.2
fso76400
Fistulifera solaris
6.5e-19
97.8
501
23.0
ccr52380
Chondrus crispus
1.1e-18
97.1
163
32.5
ps00G160950
Pseudo-nitzschia multiseries
2.5e-18
95.9
264
28.8
Naga_101146g2
Nannochloropsis gaditana
3.2e-18
95.5
389
23.9
Pp3c11_12670
Physcomitrella patens
4.2e-18
95.1
412
24.3
ps00G117100
Pseudo-nitzschia multiseries
9.4e-18
94.0
330
26.4
ps00G79480
Pseudo-nitzschia multiseries
2.1e-17
92.8
134
40.3
tho269800
Thalassiosira oceanica
2.7e-17
92.4
426
22.8
PSNMU-V1.4_AUG-EV-PASAV3_0001900
Pseudo-nitzschia multistriata
3.6e-17
92.0
486
21.0
Ec-21_000440
Ectocarpus siliculosus
6.1e-17
91.3
402
21.4
Ec-07_000280
Ectocarpus siliculosus
1.4e-16
90.1
440
23.4
ccr143000
Chondrus crispus
5.2e-16
88.2
163
32.5
CC00G30360
Cyclotella cryptica
6.8e-16
87.8
866
21.2
ccr12660
Chondrus crispus
1.5e-15
86.7
411
23.4
CC00G67280
Cyclotella cryptica
1.5e-15
86.7
451
23.7
CC00G183890
Cyclotella cryptica
2.0e-15
86.3
459
21.6
tho207000
Thalassiosira oceanica
2.0e-15
86.3
403
24.6
CC00G110590
Cyclotella cryptica
2.6e-15
85.9
447
23.7
tho24160
Thalassiosira oceanica
2.6e-15
85.9
405
24.0
ccr195620
Chondrus crispus
3.4e-15
85.5
163
31.9
CC00G28500
Cyclotella cryptica
3.4e-15
85.5
426
23.2
tho02320
Thalassiosira oceanica
5.7e-15
84.7
430
23.3
ccr77380
Chondrus crispus
7.5e-15
84.3
155
29.7
sya00G35570
Synedra acus
7.5e-15
84.3
488
23.2
ccr158720
Chondrus crispus
9.8e-15
84.0
160
30.6
ps00G109810
Pseudo-nitzschia multiseries
9.8e-15
84.0
134
38.8
tho20420
Thalassiosira oceanica
1.3e-14
83.6
448
24.6
CC00G139280
Cyclotella cryptica
1.7e-14
83.2
441
24.0
tho146100
Thalassiosira oceanica
2.2e-14
82.8
438
23.5
Cre03.g186800
Chlamydomonas reinhardtii
2.8e-14
82.4
331
23.9
tho64380
Thalassiosira oceanica
3.7e-14
82.0
478
22.2
Cre03.g183950
Chlamydomonas reinhardtii
4.9e-14
81.6
331
23.6
fso11860
Fistulifera solaris
4.9e-14
81.6
463
23.3
fso121990
Fistulifera solaris
4.9e-14
81.6
463
22.0
tho31100
Thalassiosira oceanica
4.9e-14
81.6
431
20.9
fso06610
Fistulifera solaris
6.3e-14
81.3
463
23.3
CC00G100660
Cyclotella cryptica
8.3e-14
80.9
433
23.8
Pp3c19_10880
Physcomitrella patens
8.3e-14
80.9
425
23.3
ccr46400
Chondrus crispus
1.1e-13
80.5
160
30.0
tho83920
Thalassiosira oceanica
1.1e-13
80.5
455
23.3
ccr170160
Chondrus crispus
1.4e-13
80.1
160
29.4
Cre16.g673450
Chlamydomonas reinhardtii
1.4e-13
80.1
331
23.3
tho89820
Thalassiosira oceanica
1.4e-13
80.1
176
31.8
ps00G134200
Pseudo-nitzschia multiseries
1.8e-13
79.7
313
24.9
PSNMU-V1.4_AUG-EV-PASAV3_0006560
Pseudo-nitzschia multistriata
2.4e-13
79.3
366
20.8
Pp3c23_1320
Physcomitrella patens
2.4e-13
79.3
177
31.6
Cre01.g045850
Chlamydomonas reinhardtii
4.1e-13
78.6
331
23.3
PSNMU-V1.4_AUG-EV-PASAV3_0011870
Pseudo-nitzschia multistriata
4.1e-13
78.6
366
21.9
ccr12580
Chondrus crispus
5.4e-13
78.2
338
24.0
tho158140
Thalassiosira oceanica
5.4e-13
78.2
173
31.8
fso200830
Fistulifera solaris
7.0e-13
77.8
463
23.5
tho16720
Thalassiosira oceanica
1.2e-12
77.0
439
23.2
CC00G06130
Cyclotella cryptica
1.6e-12
76.6
445
22.7
tho197380
Thalassiosira oceanica
1.6e-12
76.6
448
22.5
ptri25700
Phaeodactylum tricornutum
3.5e-12
75.5
457
23.4
tho105160
Thalassiosira oceanica
3.5e-12
75.5
478
22.4
AT4G23160
Arabidopsis thaliana
4.5e-12
75.1
428
22.9
ccr12560
Chondrus crispus
4.5e-12
75.1
137
31.4
ptri51190
Phaeodactylum tricornutum
1.0e-11
73.9
202
29.2
ccr12620
Chondrus crispus
1.7e-11
73.2
128
32.8
Ec-21_002130
Ectocarpus siliculosus
1.7e-11
73.2
250
22.8
ccr121940
Chondrus crispus
2.3e-11
72.8
152
28.3
sya00G170370
Synedra acus
2.3e-11
72.8
296
26.7
ptri12390
Phaeodactylum tricornutum
2.9e-11
72.4
209
26.3
ptri98580
Phaeodactylum tricornutum
2.9e-11
72.4
184
26.6
sya00G45490
Synedra acus
2.9e-11
72.4
495
21.6
sya00G236680
Synedra acus
2.9e-11
72.4
495
21.6
CC00G00700
Cyclotella cryptica
3.8e-11
72.0
327
23.2
CC00G120870
Cyclotella cryptica
3.8e-11
72.0
327
23.2
Naga_100433g2
Nannochloropsis gaditana
3.8e-11
72.0
287
22.6
ccr187100
Chondrus crispus
5.0e-11
71.6
163
28.2
fso51440
Fistulifera solaris
5.0e-11
71.6
427
23.0
ptri104120
Phaeodactylum tricornutum
5.0e-11
71.6
209
26.3
ptri98640
Phaeodactylum tricornutum
6.6e-11
71.2
179
26.8
fso63650
Fistulifera solaris
8.6e-11
70.9
440
22.3
tho329240
Thalassiosira oceanica
1.1e-10
70.5
172
27.9
ATMG00810
Arabidopsis thaliana
1.5e-10
70.1
268
26.9
CC00G35370
Cyclotella cryptica
2.5e-10
69.3
502
21.1
ptri24690
Phaeodactylum tricornutum
2.5e-10
69.3
158
31.0
ccr12540
Chondrus crispus
3.3e-10
68.9
352
24.1
ptri19260
Phaeodactylum tricornutum
3.3e-10
68.9
149
32.9
fso79470
Fistulifera solaris
4.2e-10
68.6
162
27.8
fso200820
Fistulifera solaris
4.2e-10
68.6
162
27.8
tho56660
Thalassiosira oceanica
4.2e-10
68.6
432
21.8
tho225040
Thalassiosira oceanica
4.2e-10
68.6
446
22.0
tho293920
Thalassiosira oceanica
5.5e-10
68.2
446
20.4
tho338540
Thalassiosira oceanica
5.5e-10
68.2
446
20.4
CC00G89570
Cyclotella cryptica
7.2e-10
67.8
327
22.3
Pp3c13_150
Physcomitrella patens
7.2e-10
67.8
256
26.2
sya00G153830
Synedra acus
7.2e-10
67.8
325
24.0
tho131480
Thalassiosira oceanica
7.2e-10
67.8
348
22.4
CC00G166190
Cyclotella cryptica
9.5e-10
67.4
160
30.6
ptri239310
Phaeodactylum tricornutum
1.2e-09
67.0
436
22.5
PSNMU-V1.4_AUG-EV-PASAV3_0032260
Pseudo-nitzschia multistriata
1.6e-09
66.6
116
34.5
ptri239250
Phaeodactylum tricornutum
1.6e-09
66.6
436
22.5
ccr173000
Chondrus crispus
2.1e-09
66.2
163
27.0
fso11910
Fistulifera solaris
2.1e-09
66.2
345
22.3
gene3462
Fragilariopsis cylindrus
2.8e-09
65.9
127
35.4
tho94380
Thalassiosira oceanica
2.8e-09
65.9
485
21.0
fso166700
Fistulifera solaris
3.6e-09
65.5
430
22.6
Ec-03_001760
Ectocarpus siliculosus
4.7e-09
65.1
162
29.6
ptri211490
Phaeodactylum tricornutum
4.7e-09
65.1
436
22.5
tho78180
Thalassiosira oceanica
4.7e-09
65.1
487
21.4
tho86000
Thalassiosira oceanica
6.1e-09
64.7
176
28.4
fso120110
Fistulifera solaris
8.0e-09
64.3
162
27.8
tho219020
Thalassiosira oceanica
8.0e-09
64.3
518
20.7
sya00G247220
Synedra acus
1.0e-08
63.9
173
28.3
ccr12640
Chondrus crispus
2.3e-08
62.8
153
26.1
CC00G87590
Cyclotella cryptica
2.3e-08
62.8
297
24.2
ccr185520
Chondrus crispus
5.2e-08
61.6
70
37.1
sya00G165370
Synedra acus
5.2e-08
61.6
161
28.0
ccr97800
Chondrus crispus
1.2e-07
60.5
73
42.5
CC00G177980
Cyclotella cryptica
1.2e-07
60.5
339
20.9
sya00G179360
Synedra acus
2.0e-07
59.7
160
29.4
sya00G214830
Synedra acus
2.0e-07
59.7
133
27.1
tho502580
Thalassiosira oceanica
2.0e-07
59.7
175
26.9
ccr12600
Chondrus crispus
2.6e-07
59.3
58
46.6
CC00G170410
Cyclotella cryptica
3.4e-07
58.9
146
30.1
CC00G132530
Cyclotella cryptica
4.4e-07
58.5
160
30.6
tho543420
Thalassiosira oceanica
4.4e-07
58.5
219
26.0
ccr97560
Chondrus crispus
5.7e-07
58.2
70
35.7
Pp3c3_35870
Physcomitrella patens
5.7e-07
58.2
163
25.2
ps00G00740
Pseudo-nitzschia multiseries
5.7e-07
58.2
269
23.4
fso04020
Fistulifera solaris
9.8e-07
57.4
202
26.2
CC00G160950
Cyclotella cryptica
1.3e-06
57.0
162
31.5
ptri237730
Phaeodactylum tricornutum
1.3e-06
57.0
148
29.1
Pp3c14_23500
Physcomitrella patens
1.7e-06
56.6
166
27.7
tho99520
Thalassiosira oceanica
1.7e-06
56.6
174
25.9
CC00G83480
Cyclotella cryptica
2.2e-06
56.2
165
26.7
sya00G180660
Synedra acus
2.2e-06
56.2
183
23.5
Sro59_g034310
Seminavis robusta
4.9e-06
55.1
163
25.2
ccr106200
Chondrus crispus
6.3e-06
54.7
61
44.3
tho75140
Thalassiosira oceanica
6.3e-06
54.7
157
28.7
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (12 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (37 genes)
Pseudo-nitzschia multiseries (8 genes)
Fistulifera solaris (14 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (35 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (6 genes)
Nannochloropsis gaditana (6 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (2 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (24 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (10 genes)
Physcomitrella patens (7 genes)
Chlamydomonas reinhardtii (4 genes)
Pseudo-nitzschia multistriata (7 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing