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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
CC00G01230
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
CC00G01230
Cyclotella cryptica
1.5e-245
849.7
417
100.0
tps41280
Thalassiosira pseudonana
6.7e-153
542.0
444
64.2
ptri157290
Phaeodactylum tricornutum
3.4e-64
247.3
332
41.0
fso15620
Fistulifera solaris
1.7e-63
245.0
380
41.3
fso143650
Fistulifera solaris
3.7e-63
243.8
374
40.9
ps00G169880
Pseudo-nitzschia multiseries
4.9e-63
243.4
350
39.7
Sro303_g112410
Seminavis robusta
4.9e-63
243.4
415
37.1
sya00G138480
Synedra acus
8.4e-63
242.7
325
43.1
PSNMU-V1.4_AUG-EV-PASAV3_0015210
Pseudo-nitzschia multistriata
5.1e-60
233.4
366
38.0
tho11520
Thalassiosira oceanica
8.9e-57
222.6
356
36.2
gene6869
Fragilariopsis cylindrus
3.4e-56
220.7
294
41.5
gene139
Fragilariopsis cylindrus
3.4e-56
220.7
294
41.5
CC00G75810
Cyclotella cryptica
5.1e-52
206.8
367
35.7
CC00G78200
Cyclotella cryptica
5.1e-52
206.8
367
35.7
tps11960
Thalassiosira pseudonana
2.4e-49
198.0
309
40.1
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (2 genes)
Thalassiosira oceanica (1 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (2 genes)
Fragilariopsis cylindrus (2 genes)
Cyclotella cryptica (3 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (0 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (1 genes)
Synedra acus (1 genes)
Physcomitrella patens (0 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
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Positions and Genes
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