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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
ATMG00820
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
ATMG00820
Arabidopsis thaliana
3.4e-95
349.0
171
100.0
AT4G23160
Arabidopsis thaliana
5.0e-22
105.9
116
43.1
Pp3c19_10880
Physcomitrella patens
1.8e-19
97.4
120
40.0
Pp3c7_15950
Physcomitrella patens
1.8e-19
97.4
116
43.1
Pp3c23_1320
Physcomitrella patens
2.0e-18
94.0
120
40.0
Pp3c18_3680
Physcomitrella patens
4.8e-17
89.4
120
39.2
Cre16.g673450
Chlamydomonas reinhardtii
5.4e-16
85.9
102
44.1
Cre03.g186800
Chlamydomonas reinhardtii
2.0e-15
84.0
102
43.1
Cre01.g045850
Chlamydomonas reinhardtii
2.0e-15
84.0
102
43.1
ccr12640
Chondrus crispus
2.9e-14
80.1
114
36.0
Pp3c11_12670
Physcomitrella patens
6.5e-14
79.0
118
35.6
ccr12540
Chondrus crispus
8.6e-14
78.6
86
43.0
ccr12560
Chondrus crispus
8.6e-14
78.6
86
43.0
ccr12580
Chondrus crispus
8.6e-14
78.6
86
43.0
ccr12600
Chondrus crispus
8.6e-14
78.6
86
43.0
ccr162000
Chondrus crispus
1.9e-13
77.4
114
35.1
ccr162020
Chondrus crispus
9.5e-13
75.1
86
41.9
ccr162420
Chondrus crispus
9.5e-13
75.1
86
41.9
tho16720
Thalassiosira oceanica
9.5e-13
75.1
106
35.8
tho83920
Thalassiosira oceanica
9.5e-13
75.1
106
35.8
Pp3c1_34910
Physcomitrella patens
2.8e-12
73.6
89
33.7
Ec-07_000280
Ectocarpus siliculosus
1.8e-11
70.9
87
39.1
tho131480
Thalassiosira oceanica
4.0e-11
69.7
106
34.9
CC00G163140
Cyclotella cryptica
5.2e-11
69.3
126
29.4
fso06610
Fistulifera solaris
5.2e-11
69.3
88
40.9
fso11860
Fistulifera solaris
5.2e-11
69.3
88
40.9
fso200830
Fistulifera solaris
5.2e-11
69.3
88
40.9
Sro1780_g078321
Seminavis robusta
6.8e-11
68.9
90
37.8
tho94400
Thalassiosira oceanica
6.8e-11
68.9
81
39.5
Naga_103028g1
Nannochloropsis gaditana
8.9e-11
68.6
89
37.1
Pp3c20_2910
Physcomitrella patens
1.5e-10
67.8
56
51.8
CC00G30360
Cyclotella cryptica
2.6e-10
67.0
90
35.6
CC00G141300
Cyclotella cryptica
2.6e-10
67.0
126
31.0
Naga_101449g1
Nannochloropsis gaditana
2.6e-10
67.0
89
37.1
Naga_100433g2
Nannochloropsis gaditana
2.6e-10
67.0
89
38.2
Naga_101146g2
Nannochloropsis gaditana
3.4e-10
66.6
89
38.2
Naga_101291g1
Nannochloropsis gaditana
3.4e-10
66.6
89
37.1
Naga_100533g2
Nannochloropsis gaditana
3.4e-10
66.6
89
36.0
tho20420
Thalassiosira oceanica
3.4e-10
66.6
123
31.7
Naga_101142g1
Nannochloropsis gaditana
4.4e-10
66.2
89
37.1
tho56660
Thalassiosira oceanica
4.4e-10
66.2
90
36.7
Naga_100497g3
Nannochloropsis gaditana
5.7e-10
65.9
89
36.0
Naga_101948g1
Nannochloropsis gaditana
7.5e-10
65.5
78
41.0
Naga_100252g2
Nannochloropsis gaditana
7.5e-10
65.5
89
37.1
CC00G170210
Cyclotella cryptica
9.8e-10
65.1
93
36.6
fso11910
Fistulifera solaris
9.8e-10
65.1
88
40.9
fso181140
Fistulifera solaris
1.3e-09
64.7
86
34.9
Naga_101065g1
Nannochloropsis gaditana
1.3e-09
64.7
89
37.1
Pp3c26_871
Physcomitrella patens
1.3e-09
64.7
63
38.1
tho338540
Thalassiosira oceanica
1.3e-09
64.7
107
31.8
fso174580
Fistulifera solaris
1.7e-09
64.3
86
34.9
tho111660
Thalassiosira oceanica
1.7e-09
64.3
122
28.7
fso121990
Fistulifera solaris
2.2e-09
63.9
88
39.8
Naga_101002g3
Nannochloropsis gaditana
2.8e-09
63.5
89
37.1
CC00G06130
Cyclotella cryptica
3.7e-09
63.2
81
35.8
Naga_100055g1
Nannochloropsis gaditana
3.7e-09
63.2
78
38.5
tho99520
Thalassiosira oceanica
4.9e-09
62.8
131
27.5
tho293920
Thalassiosira oceanica
4.9e-09
62.8
107
30.8
CC00G35370
Cyclotella cryptica
6.3e-09
62.4
129
31.0
Naga_100417g4
Nannochloropsis gaditana
8.3e-09
62.0
84
36.9
sya00G49730
Synedra acus
8.3e-09
62.0
85
37.6
Naga_100294g11
Nannochloropsis gaditana
1.1e-08
61.6
84
38.1
Pp3c12_12830
Physcomitrella patens
1.1e-08
61.6
93
35.5
CC00G100660
Cyclotella cryptica
1.4e-08
61.2
72
38.9
Sro2023_g311560
Seminavis robusta
2.4e-08
60.5
88
37.5
Naga_100336g4
Nannochloropsis gaditana
9.2e-08
58.5
84
35.7
Pp3c1_29930
Physcomitrella patens
1.2e-07
58.2
74
37.8
Pp3c22_17610
Physcomitrella patens
2.7e-07
57.0
67
37.3
Pp3c23_17680
Physcomitrella patens
3.5e-07
56.6
52
40.4
sya00G207820
Synedra acus
3.5e-07
56.6
116
33.6
sya00G212950
Synedra acus
3.5e-07
56.6
90
36.7
tho123740
Thalassiosira oceanica
3.5e-07
56.6
92
34.8
Pp3c1_38590
Physcomitrella patens
4.5e-07
56.2
86
33.7
tho94380
Thalassiosira oceanica
4.5e-07
56.2
99
34.3
sya00G266280
Synedra acus
1.0e-06
55.1
99
37.4
sya00G62270
Synedra acus
1.3e-06
54.7
90
35.6
tho633240
Thalassiosira oceanica
1.3e-06
54.7
88
33.0
sya00G181920
Synedra acus
1.7e-06
54.3
90
35.6
CC00G48350
Cyclotella cryptica
2.3e-06
53.9
117
26.5
ptri214430
Phaeodactylum tricornutum
2.3e-06
53.9
85
35.3
tho78180
Thalassiosira oceanica
2.3e-06
53.9
88
35.2
Sro114_g056420
Seminavis robusta
2.9e-06
53.5
87
34.5
sya00G177030
Synedra acus
2.9e-06
53.5
69
40.6
tho86000
Thalassiosira oceanica
3.8e-06
53.1
88
33.0
sya00G45490
Synedra acus
5.0e-06
52.8
94
36.2
sya00G229840
Synedra acus
5.0e-06
52.8
89
34.8
sya00G236680
Synedra acus
5.0e-06
52.8
94
36.2
tho408860
Thalassiosira oceanica
6.6e-06
52.4
50
48.0
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (16 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (7 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (8 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (1 genes)
Nannochloropsis gaditana (16 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (2 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (8 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (3 genes)
Synedra acus (10 genes)
Physcomitrella patens (13 genes)
Chlamydomonas reinhardtii (3 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing