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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT5G56190
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT5G56190
Arabidopsis thaliana
3.1e-257
888.6
448
100.0
AT3G13340
Arabidopsis thaliana
1.1e-193
677.6
449
74.4
AT1G55680
Arabidopsis thaliana
7.6e-187
654.8
448
70.3
Pp3c3_27480
Physcomitrella patens
2.2e-149
530.4
445
58.2
Pp3c10_22840
Physcomitrella patens
1.3e-146
521.2
447
56.6
Pp3c10_22842
Physcomitrella patens
4.6e-144
512.7
444
56.3
AT1G78070
Arabidopsis thaliana
3.0e-143
510.0
395
60.8
AT1G36070
Arabidopsis thaliana
6.7e-135
482.3
410
57.3
ccr188640
Chondrus crispus
4.0e-95
350.1
395
45.6
Cre09.g391875
Chlamydomonas reinhardtii
6.6e-74
279.6
581
32.5
gsu75140
Galdieria sulphuraria
1.4e-68
261.9
393
38.7
gsu75160
Galdieria sulphuraria
1.5e-65
251.9
408
37.3
CM09G00140
Cyanidioschyzon merolae
6.7e-50
199.9
303
39.3
SPBC2A9.03
Schizosaccharomyces pombe
1.3e-34
149.1
374
30.2
Cre06.g286450
Chlamydomonas reinhardtii
7.4e-17
90.1
318
27.0
gsu28090
Galdieria sulphuraria
1.3e-16
89.4
333
26.1
CM07G00360
Cyanidioschyzon merolae
3.2e-12
74.7
131
34.4
pte89360
Paramecium tetraurelia
3.6e-11
71.2
223
25.1
SPBC577.09
Schizosaccharomyces pombe
8.2e-08
60.1
119
31.9
SPCC4G3.03
Schizosaccharomyces pombe
8.2e-08
60.1
206
24.8
AA0039G00260
Aureococcus anophagefferens
1.4e-07
59.3
176
27.3
Sro576_g169520
Seminavis robusta
3.1e-07
58.2
172
27.9
AT4G34460
Arabidopsis thaliana
2.7e-06
55.1
169
26.0
AT1G52730
Arabidopsis thaliana
7.7e-06
53.5
145
26.9
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (1 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (3 genes)
Arabidopsis thaliana (7 genes)
Cyanidioschyzon merolae (2 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (3 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (1 genes)
Seminavis robusta (1 genes)
Synedra acus (0 genes)
Physcomitrella patens (3 genes)
Chlamydomonas reinhardtii (2 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing