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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT3G28060
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT3G28060
Arabidopsis thaliana
2.3e-117
422.9
216
100.0
AT5G40210
Arabidopsis thaliana
6.5e-35
149.1
138
54.3
AT3G28080
Arabidopsis thaliana
5.2e-32
139.4
135
48.9
AT3G28070
Arabidopsis thaliana
5.7e-31
136.0
133
51.1
AT3G28130
Arabidopsis thaliana
4.8e-30
132.9
142
48.6
AT3G28100
Arabidopsis thaliana
1.6e-28
127.9
133
48.1
AT3G28050
Arabidopsis thaliana
1.6e-25
117.9
129
48.8
AT5G40230
Arabidopsis thaliana
4.1e-21
103.2
169
36.1
AT5G40240
Arabidopsis thaliana
3.5e-20
100.1
128
43.0
AT4G15540
Arabidopsis thaliana
1.3e-19
98.2
139
38.8
AT5G64700
Arabidopsis thaliana
5.9e-12
72.8
154
29.9
AT2G39510
Arabidopsis thaliana
8.6e-11
68.9
117
33.3
AT4G30420
Arabidopsis thaliana
1.5e-10
68.2
118
33.9
AT3G30340
Arabidopsis thaliana
1.9e-10
67.8
122
34.4
AT5G07050
Arabidopsis thaliana
2.1e-09
64.3
135
33.3
AT2G37450
Arabidopsis thaliana
3.6e-09
63.5
118
28.8
AT4G01450
Arabidopsis thaliana
3.6e-09
63.5
180
27.2
AT5G13670
Arabidopsis thaliana
8.0e-09
62.4
117
29.1
AT4G01430
Arabidopsis thaliana
1.8e-08
61.2
128
29.7
AT4G01440
Arabidopsis thaliana
5.2e-08
59.7
121
26.4
AT5G45370
Arabidopsis thaliana
6.8e-08
59.3
123
32.5
AT1G21890
Arabidopsis thaliana
8.9e-08
58.9
137
30.7
AT1G44800
Arabidopsis thaliana
1.5e-07
58.2
122
30.3
AT1G43650
Arabidopsis thaliana
2.0e-07
57.8
118
28.8
AT4G28040
Arabidopsis thaliana
2.0e-07
57.8
120
29.2
AT1G60050
Arabidopsis thaliana
4.4e-07
56.6
124
28.2
Pp3c5_11100
Physcomitrella patens
4.4e-07
56.6
123
29.3
AT1G75500
Arabidopsis thaliana
1.3e-06
55.1
146
26.0
AT4G19185
Arabidopsis thaliana
1.3e-06
55.1
123
28.5
AT2G40900
Arabidopsis thaliana
2.2e-06
54.3
120
30.0
AT1G09380
Arabidopsis thaliana
2.8e-06
53.9
122
27.0
AT4G08300
Arabidopsis thaliana
8.3e-06
52.4
165
26.7
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (0 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (0 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (31 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (0 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (1 genes)
Chlamydomonas reinhardtii (0 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing