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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT2G44810
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT2G44810
Arabidopsis thaliana
1.1e-209
730.3
358
100.0
AT4G16820
Arabidopsis thaliana
2.1e-91
337.4
364
49.5
AT2G30550
Arabidopsis thaliana
2.5e-68
260.8
357
40.3
AT1G06800
Arabidopsis thaliana
1.3e-67
258.5
358
40.5
AT1G51440
Arabidopsis thaliana
1.2e-65
251.9
364
40.7
Pp3c4_16570
Physcomitrella patens
7.7e-65
249.2
379
36.9
AT1G30370
Arabidopsis thaliana
5.5e-63
243.0
366
38.3
AT1G05800
Arabidopsis thaliana
1.7e-59
231.5
356
39.9
Pp3c22_270
Physcomitrella patens
6.3e-59
229.6
377
36.3
AT2G31690
Arabidopsis thaliana
1.1e-58
228.8
354
39.0
Pp3c23_13660
Physcomitrella patens
1.4e-55
218.4
369
37.1
Pp3c22_301
Physcomitrella patens
2.2e-51
204.5
376
33.5
Pp3c22_300
Physcomitrella patens
2.2e-51
204.5
376
33.5
Pp3c12_7930
Physcomitrella patens
4.2e-47
190.3
346
35.8
AT1G06250
Arabidopsis thaliana
1.3e-43
178.7
373
32.4
AT2G31100
Arabidopsis thaliana
4.8e-43
176.8
361
34.1
AT4G18550
Arabidopsis thaliana
1.8e-42
174.9
364
33.8
AT2G42690
Arabidopsis thaliana
3.1e-42
174.1
382
33.8
Pp3c4_20200
Physcomitrella patens
2.7e-41
171.0
394
30.5
Ec-16_003710
Ectocarpus siliculosus
8.3e-19
96.3
375
25.1
Pp3c1_35340
Physcomitrella patens
1.5e-15
85.5
245
31.4
Ec-16_000950
Ectocarpus siliculosus
1.0e-13
79.3
362
23.5
Cre01.g002400
Chlamydomonas reinhardtii
3.4e-12
74.3
118
36.4
AT4G13550
Arabidopsis thaliana
7.5e-12
73.2
165
34.5
Ec-06_004240
Ectocarpus siliculosus
7.5e-12
73.2
121
36.4
Pp3c16_6180
Physcomitrella patens
1.7e-11
72.0
157
33.8
Ec-27_003400
Ectocarpus siliculosus
2.4e-10
68.2
171
29.2
ptri206080
Phaeodactylum tricornutum
2.4e-10
68.2
177
32.2
Pp3c5_26430
Physcomitrella patens
7.0e-10
66.6
153
34.0
Pp3c25_13720
Physcomitrella patens
1.2e-09
65.9
151
31.8
Sro524_g159970
Seminavis robusta
2.0e-09
65.1
161
29.8
AT5G18640
Arabidopsis thaliana
2.7e-09
64.7
171
29.2
CM16G01580
Cyanidioschyzon merolae
3.5e-09
64.3
168
31.5
Cre09.g391986
Chlamydomonas reinhardtii
3.5e-09
64.3
210
31.0
emh242610
Emiliania huxleyi
7.8e-09
63.2
179
32.4
Naga_100241g4
Nannochloropsis gaditana
1.7e-08
62.0
155
31.6
Naga_100718g2
Nannochloropsis gaditana
1.7e-08
62.0
155
31.6
sya00G110920
Synedra acus
2.3e-08
61.6
162
25.3
Pp3c7_2230
Physcomitrella patens
3.0e-08
61.2
151
31.1
tps00820
Thalassiosira pseudonana
3.9e-08
60.8
167
29.9
AT5G18630
Arabidopsis thaliana
6.6e-08
60.1
171
28.7
CC00G178200
Cyclotella cryptica
6.6e-08
60.1
167
29.9
Naga_100101g12
Nannochloropsis gaditana
8.6e-08
59.7
158
31.0
WBGene00017764
Caenorhabditis elegans
1.5e-07
58.9
151
27.2
sya00G266690
Synedra acus
1.9e-07
58.5
177
29.9
ccr44040
Chondrus crispus
2.5e-07
58.2
157
27.4
CC00G12670
Cyclotella cryptica
3.3e-07
57.8
164
29.3
gene10296
Fragilariopsis cylindrus
4.3e-07
57.4
137
28.5
Naga_100180g7
Nannochloropsis gaditana
4.3e-07
57.4
186
25.8
pte36480
Paramecium tetraurelia
4.3e-07
57.4
151
30.5
Sro1178_g249520
Seminavis robusta
4.3e-07
57.4
176
29.5
CM19G02540
Cyanidioschyzon merolae
5.6e-07
57.0
110
33.6
gsu103170
Galdieria sulphuraria
5.6e-07
57.0
113
30.1
Naga_100091g1
Nannochloropsis gaditana
5.6e-07
57.0
164
29.9
pte426810
Paramecium tetraurelia
5.6e-07
57.0
173
29.5
Cre01.g005200
Chlamydomonas reinhardtii
7.3e-07
56.6
156
28.2
Sro605_g174320
Seminavis robusta
7.3e-07
56.6
176
29.0
Naga_100133g7
Nannochloropsis gaditana
9.5e-07
56.2
169
29.0
ps00G182310
Pseudo-nitzschia multiseries
9.5e-07
56.2
169
28.4
Sro2811_g337620
Seminavis robusta
1.6e-06
55.5
205
27.3
PSNMU-V1.4_AUG-EV-PASAV3_0000190
Pseudo-nitzschia multistriata
2.8e-06
54.7
200
27.5
tho333780
Thalassiosira oceanica
2.8e-06
54.7
152
30.9
Sro1532_g280260
Seminavis robusta
3.6e-06
54.3
211
25.6
tho58540
Thalassiosira oceanica
3.6e-06
54.3
164
28.7
Naga_100016g73
Nannochloropsis gaditana
4.7e-06
53.9
161
29.2
Cre07.g348550
Chlamydomonas reinhardtii
6.2e-06
53.5
170
27.6
emh172990
Emiliania huxleyi
8.1e-06
53.1
163
30.1
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (1 genes)
Thalassiosira pseudonana (1 genes)
Thalassiosira oceanica (2 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (1 genes)
Cyclotella cryptica (2 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (4 genes)
Nannochloropsis gaditana (7 genes)
Homo sapiens (0 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (1 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (15 genes)
Cyanidioschyzon merolae (2 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (1 genes)
Emiliania huxleyi (2 genes)
Paramecium tetraurelia (2 genes)
Seminavis robusta (5 genes)
Synedra acus (2 genes)
Physcomitrella patens (12 genes)
Chlamydomonas reinhardtii (4 genes)
Pseudo-nitzschia multistriata (1 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing