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Interactive Phylogenetics Module
BLAST
Workbench
Gene
GO/InterPro/KEGG description
Binding site description/sequence
Gene family
All species
Phaeodactylum tricornutum
Thalassiosira pseudonana
Thalassiosira oceanica
Pseudo-nitzschia multiseries
Fistulifera solaris
Fragilariopsis cylindrus
Cyclotella cryptica
Aureococcus anophagefferens
Ectocarpus siliculosus
Nannochloropsis gaditana
Homo sapiens
Drosophila melanogaster
Caenorhabditis elegans
Saccharomyces cerevisiae strain S288C
Schizosaccharomyces pombe
Arabidopsis thaliana
Cyanidioschyzon merolae
Chondrus crispus
Galdieria sulphuraria
Emiliania huxleyi
Paramecium tetraurelia
Seminavis robusta
Synedra acus
Physcomitrella patens
Chlamydomonas reinhardtii
Pseudo-nitzschia multistriata
PLAZA diatoms 1.0
Interactive Phylogenetics Module
Gene Id
AT1G72520
Data Settings
Gene Selection
Species Selection
Genes
Include
Gene ID
Organism
E-value
Bitscore
Alignment Length
Identity Percentage
AT1G72520
Arabidopsis thaliana
0.0e+00
1818.5
927
100.0
AT1G17420
Arabidopsis thaliana
0.0e+00
1529.2
928
81.5
AT1G67560
Arabidopsis thaliana
1.7e-249
864.0
832
52.5
Pp3c12_14480
Physcomitrella patens
2.1e-239
830.5
857
47.7
AT3G45140
Arabidopsis thaliana
1.6e-218
761.1
835
46.0
Pp3c11_5120
Physcomitrella patens
6.5e-209
729.2
837
45.4
AT1G55020
Arabidopsis thaliana
9.4e-208
725.3
833
45.1
Pp3c1_29300
Physcomitrella patens
5.9e-202
706.1
841
42.4
Pp3c1_29700
Physcomitrella patens
6.1e-199
696.0
841
42.1
AT3G22400
Arabidopsis thaliana
4.4e-197
689.9
845
44.0
Pp3c15_13020
Physcomitrella patens
2.8e-196
687.2
824
44.1
Pp3c15_12990
Physcomitrella patens
2.8e-196
687.2
824
44.1
Pp3c15_12980
Physcomitrella patens
1.2e-194
681.8
828
42.9
Pp3c15_13040
Physcomitrella patens
1.6e-194
681.4
828
43.0
Pp3c7_26600
Physcomitrella patens
5.9e-194
679.5
752
45.2
Pp3c14_10640
Physcomitrella patens
3.4e-189
663.7
829
42.9
Pp3c17_16260
Physcomitrella patens
4.1e-187
656.8
832
42.5
Pp3c3_18720
Physcomitrella patens
6.1e-130
466.8
446
51.3
Pp3c4_10250
Physcomitrella patens
3.6e-106
387.9
531
42.2
Cre12.g512300
Chlamydomonas reinhardtii
1.2e-77
293.1
577
35.5
Pp3c3_18710
Physcomitrella patens
2.6e-56
222.2
270
41.1
ENSG00000179148
Homo sapiens
6.8e-49
197.6
509
29.7
ENSG00000012779
Homo sapiens
3.0e-44
182.2
517
28.4
ENSG00000275565
Homo sapiens
3.0e-44
182.2
517
28.4
ENSG00000179593
Homo sapiens
5.6e-43
177.9
523
29.4
ENSG00000108839
Homo sapiens
1.1e-41
173.7
517
28.4
ENSG00000179477
Homo sapiens
7.6e-40
167.5
476
27.9
ENSG00000161905
Homo sapiens
4.9e-39
164.9
518
27.4
Ec-03_000020
Ectocarpus siliculosus
1.9e-30
136.3
405
28.1
Ec-20_003620
Ectocarpus siliculosus
2.3e-28
129.4
459
25.7
Ec-20_003630
Ectocarpus siliculosus
9.6e-27
124.0
457
26.5
ccr28460
Chondrus crispus
1.3e-26
123.6
430
26.5
Ec-03_000010
Ectocarpus siliculosus
3.7e-26
122.1
378
28.3
ps00G183290
Pseudo-nitzschia multiseries
5.1e-20
101.7
324
28.4
Pp3c14_15340
Physcomitrella patens
1.3e-07
60.5
77
36.4
Number of BLAST hits for query gene (per species)
all
20
10
5
1
Organisms
Phaeodactylum tricornutum (0 genes)
Thalassiosira pseudonana (0 genes)
Thalassiosira oceanica (0 genes)
Pseudo-nitzschia multiseries (1 genes)
Fistulifera solaris (0 genes)
Fragilariopsis cylindrus (0 genes)
Cyclotella cryptica (0 genes)
Aureococcus anophagefferens (0 genes)
Ectocarpus siliculosus (4 genes)
Nannochloropsis gaditana (0 genes)
Homo sapiens (7 genes)
Drosophila melanogaster (0 genes)
Caenorhabditis elegans (0 genes)
Saccharomyces cerevisiae strain S288C (0 genes)
Schizosaccharomyces pombe (0 genes)
Arabidopsis thaliana (6 genes)
Cyanidioschyzon merolae (0 genes)
Chondrus crispus (1 genes)
Galdieria sulphuraria (0 genes)
Emiliania huxleyi (0 genes)
Paramecium tetraurelia (0 genes)
Seminavis robusta (0 genes)
Synedra acus (0 genes)
Physcomitrella patens (15 genes)
Chlamydomonas reinhardtii (1 genes)
Pseudo-nitzschia multistriata (0 genes)
External Sequences (optional)
External Sequences Type
Protein
DNA
Program Settings
MSA algorithm
MUSCLE
MAFFT
Tree construction algorithm
FastTree
IQ-TREE (includes model testing)
RAxML
PhyML
Edit MSA alignment
Positions only
Genes only
Positions and Genes
No editing