Populus trichocarpa

The black cottonwood is a tree common to western parts of North America. Although closely related species are common in other parts of the world. This species has a couple features making it an interesting model organism for biology. The genome size is only 4x that of Arabidopsis. Techniques for high-throughput transformation are available, that in combination with the genome sequence become valuable tools to create transgenic plants. As the cottonwood can grow on marginal lands, where it is commonly used as windbreaks, it can also be used as a crop for second generation bio-fuels.

Publication:
Tuskan, G.A. et al. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313, 1596-604 (2006).

Info and Links

Source JGI assembly release v3.0, annotation v3.0
PLAZA identifier ptr
NCBI link Populus trichocarpa
Mitochondrion null
Chloroplast EF489041

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Annotations


Page 1 of 2074, showing 20 records out of 41479 total, starting on record 1, ending on 20

Gene Transcript Start Stop Strand Chr Type Gene family
PT00G00010 PT00G00010.1 6087 6700 - scaffold_621 coding HOM03D000208
PT00G00020 PT00G00020.1 10169 13190 - scaffold_621 coding HOM03D001922
PT00G00030 PT00G00030.1 8 1059 - scaffold_2736 coding HOM03D000080
PT00G00040 PT00G00040.1 31486 32016 - scaffold_131 coding singleton
PT00G00050 PT00G00050.1 61083 62881 - scaffold_131 coding HOM03D000621
PT00G00060 PT00G00060.1 80867 81091 + scaffold_131 coding singleton
PT00G00070 PT00G00070.1 1443 4229 - scaffold_822 coding HOM03D000003
PT00G00080 PT00G00080.1 8546 11023 - scaffold_822 coding HOM03D000003
PT00G00090 PT00G00090.1 115454 116683 + scaffold_23 coding HOM03D000593
PT00G00100 PT00G00100.1 251692 255916 + scaffold_23 coding HOM03D001546
PT00G00110 PT00G00110.1 287407 288172 - scaffold_23 coding HOM03D002892
PT00G00120 PT00G00120.1 362482 362887 + scaffold_23 coding HOM03D000593
PT00G00130 PT00G00130.1 523333 527655 + scaffold_23 coding HOM03D000037
PT00G00140 PT00G00140.1 586877 587613 + scaffold_23 coding HOM03D005681
PT00G00150 PT00G00150.1 703700 707616 + scaffold_23 coding HOM03D001280
PT00G00160 PT00G00160.1 721607 728489 - scaffold_23 coding HOM03D003411
PT00G00170 PT00G00170.1 746690 748017 - scaffold_23 coding HOM03D000987
PT00G00180 PT00G00180.1 762282 762941 + scaffold_23 coding HOM03D011144
PT00G00190 PT00G00190.1 5272 5790 - scaffold_1425 coding HOM03D014417
PT00G00200 PT00G00200.1 1505 3235 + scaffold_2689 coding HOM03D008930