Download section
All downloads are also available from ftp-directory : ftp directoryFile | Description |
---|---|
PLAZA_PGE_poster.pptx | Poster for PLAZA 2.5 |
PLAZA_flyer_2.5.pdf | Flyer presenting the capabilities of the PLAZA 2.5 platform. |
PLAZA_flyer_3.0.pdf | Flyer presenting the capabilities of the PLAZA 3.0 platform. |
PLAZA_presentation.ppt | Presentation on the standard capabilities of PLAZA, including several frequently asked questions on topics concerning wetlab research. Presented at PSB Weekly Science Meeting 2010-01-22. |
Species | Annotation |
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Amborella trichopoda | annotation.atr.csv.gz (1.53 MB) |
Arabidopsis thaliana | annotation.ath.csv.gz (1.79 MB) |
Cycas micholitzii | annotation.cmi.csv.gz (536.61 KB) |
Ginkgo biloba | annotation.gbi.csv.gz (580.23 KB) |
Gnetum montanum | annotation.gmo.csv.gz (615.27 KB) |
Oryza sativa ssp. japonica | annotation.osa.csv.gz (3.03 MB) |
Physcomitrella patens | annotation.ppa.csv.gz (1.85 MB) |
Picea abies | annotation.pab.csv.gz (2.29 MB) |
Picea glauca | annotation.pgl.csv.gz (634.87 KB) |
Picea sitchensis | annotation.psi.csv.gz (436.87 KB) |
Pinus pinaster | annotation.ppi.csv.gz (1.51 MB) |
Pinus sylvestris | annotation.psy.csv.gz (782.32 KB) |
Pinus taeda | annotation.pta.csv.gz (3.70 MB) |
Populus trichocarpa | annotation.ptr.csv.gz (2.59 MB) |
Pseudotsuga menziesii | annotation.pme.csv.gz (3.10 MB) |
Taxus baccata | annotation.tba.csv.gz (639.22 KB) |
All species | annotation.csv.gz (25.50 MB) |
Species | ID conversion |
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Amborella trichopoda | id_conversion.atr.csv.gz (243.45 KB) |
Arabidopsis thaliana | id_conversion.ath.csv.gz (365.96 KB) |
Cycas micholitzii | id_conversion.cmi.csv.gz (231.83 KB) |
Ginkgo biloba | id_conversion.gbi.csv.gz (241.60 KB) |
Gnetum montanum | id_conversion.gmo.csv.gz (258.86 KB) |
Oryza sativa ssp. japonica | id_conversion.osa.csv.gz (308.82 KB) |
Physcomitrella patens | id_conversion.ppa.csv.gz (321.87 KB) |
Picea abies | id_conversion.pab.csv.gz (370.35 KB) |
Picea glauca | id_conversion.pgl.csv.gz (227.87 KB) |
Picea sitchensis | id_conversion.psi.csv.gz (154.58 KB) |
Pinus pinaster | id_conversion.ppi.csv.gz (589.09 KB) |
Pinus sylvestris | id_conversion.psy.csv.gz (274.01 KB) |
Pinus taeda | id_conversion.pta.csv.gz (441.16 KB) |
Populus trichocarpa | id_conversion.ptr.csv.gz (437.67 KB) |
Pseudotsuga menziesii | id_conversion.pme.csv.gz (1.10 MB) |
Taxus baccata | id_conversion.tba.csv.gz (251.83 KB) |
All species | Not Available |
Species | Anchorpoints |
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Amborella trichopoda | anchorpoints.atr.csv.gz (92.00 B) |
Arabidopsis thaliana | anchorpoints.ath.csv.gz (92.00 B) |
Cycas micholitzii | anchorpoints.cmi.csv.gz (92.00 B) |
Ginkgo biloba | anchorpoints.gbi.csv.gz (92.00 B) |
Gnetum montanum | anchorpoints.gmo.csv.gz (92.00 B) |
Oryza sativa ssp. japonica | anchorpoints.osa.csv.gz (92.00 B) |
Physcomitrella patens | anchorpoints.ppa.csv.gz (92.00 B) |
Picea abies | anchorpoints.pab.csv.gz (92.00 B) |
Picea glauca | anchorpoints.pgl.csv.gz (92.00 B) |
Picea sitchensis | anchorpoints.psi.csv.gz (92.00 B) |
Pinus pinaster | anchorpoints.ppi.csv.gz (92.00 B) |
Pinus sylvestris | anchorpoints.psy.csv.gz (92.00 B) |
Pinus taeda | anchorpoints.pta.csv.gz (92.00 B) |
Populus trichocarpa | anchorpoints.ptr.csv.gz (92.00 B) |
Pseudotsuga menziesii | anchorpoints.pme.csv.gz (92.00 B) |
Taxus baccata | anchorpoints.tba.csv.gz (92.00 B) |
All species | anchorpoints.csv.gz (88.00 B) |
Data type | Gene families (HOM) | Sub families (ORTH) |
---|---|---|
genefamily_data | genefamily_data.hom.csv.gz (3.86 MB) | genefamily_data.orth.csv.gz (4.82 MB) |
genefamily_enrichment | genefamily_enrichment.hom.csv.gz (75.00 B) | genefamily_enrichment.orth.csv.gz (76.00 B) |
Orthology type | Description | Data file |
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BHIF | Orthologs detected through best-BLAST hits | integrative_orthology.BHIF.csv.gz (51.13 MB) |
ORTHO | Orthologs detected through OrthoMCL clustering | integrative_orthology.ORTHO.csv.gz (31.01 MB) |
TROG | Orthologs detected through phylogenetic trees | integrative_orthology.TROG.csv.gz (38.35 MB) |