Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D001484', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '399', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p44140' => 'bna', 'A06p39080' => 'bna', 'Aa31sc18G140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3862' => 'aag', 'Actinidia09454' => 'ach', 'Actinidia10211' => 'ach', 'Actinidia23376' => 'ach', 'Actinidia23776' => 'ach', 'Actinidia23777' => 'ach', 'Ah.04g150650' => 'amhyb', 'Ah.08g218900' => 'amhyb', 'Ah.11g039360' => 'amhyb', 'Ah.13g077790' => 'amhyb', 'AL2G17760' => 'aly', 'AL3G41150' => 'aly', 'AL8G19050' => 'aly', 'AL8G21550' => 'aly', 'Aqoxy4G00034' => 'aox', 'Aqoxy5G00042' => 'aox', 'Aqoxy6G02543' => 'aox', 'Aqoxy7G03853' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3F3WIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FW66N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X4Q28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90AC01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DU5DWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1KG5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNXF08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8MRPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3X144' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFY45J' => 'arhy', 'AT1G58450' => 'ath', 'AT3G25230' => 'ath', 'AT5G48570' => 'ath', 'ATR0739G132' => 'atr', 'ATR1147G036' => 'atr', 'Atru.chr1.1310' => 'acertr', 'Atru.chr13.854' => 'acertr', 'Atru.chr4.824' => 'acertr', 'Atru.chr6.1453' => 'acertr', 'AUR62001164' => 'cqu', 'AUR62002149' => 'cqu', 'AUR62018396' => 'cqu', 'AUR62022158' => 'cqu', 'AUR62030262' => 'cqu', 'BcaB08g34446' => 'bca', 'BcaB08g34451' => 'bca', 'BcaC01g03234' => 'bca', 'BcaC06g30780' => 'bca', 'BcaC06g30781' => 'bca', 'BolC3t17738H' => 'bol', 'BolC7t44446H' => 'bol', 'BraA03t13544Z' => 'bra', 'BraA06t26822Z' => 'bra', 'C03p54520' => 'bna', 'C07p39260' => 'bna', 'CAN.G1069.21' => 'can', 'CAN.G115.5' => 'can', 'CAN.G1444.1' => 'can', 'CAN.G1818.4' => 'can', 'CAN.G724.43' => 'can', 'CAN.G874.19' => 'can', 'CANSAT01G0614' => 'cansat', 'CANSAT78G1440' => 'cansat', 'CARHR101590' => 'chi', 'CARHR183440' => 'chi', 'Carub.0002s0606' => 'cru', 'Carub.0003s2563' => 'cru', 'Carub.0008s0820' => 'cru', 'Ca_07499_v3' => 'car', 'Ca_08706_v3' => 'car', 'Ca_18008_v3' => 'car', 'Ca_23206_v3' => 'car', 'CBR_g29656' => 'cbr', 'CBR_g29659' => 'cbr', 'Cc01_g16410' => 'ccan', 'Cc03_g09080' => 'ccan', 'Cc06_g20290' => 'ccan', 'Cc06_g20300' => 'ccan', 'Cc06_g20350' => 'ccan', 'Cc10_g05120' => 'ccan', 'CDE01G0210' => 'cde', 'CDE01G0720' => 'cde', 'CDE04G3404' => 'cde', 'Cfa008668' => 'cfa', 'Cfa013756' => 'cfa', 'Cfa021438' => 'cfa', 'Ciclev10003372m.g' => 'ccl', 'Ciclev10011447m.g' => 'ccl', 'Ciclev10013213m.g' => 'ccl', 'Ciclev10031088m.g' => 'ccl', 'CiPaw.01G113200' => 'cil', 'CiPaw.08G051000' => 'cil', 'CiPaw.09G051100' => 'cil', 'CiPaw.13G051700' => 'cil', 'ClCG05G007100' => 'cla', 'ClCG09G008490' => 'cla', 'COL.COLO4_28478' => 'col', 'COL.COLO4_33102' => 'col', 'COL.COLO4_35962' => 'col', 'Cpa.g.sc142.50' => 'cpa', 'Cpa.g.sc157.11' => 'cpa', 'Cpa.g.sc8.107' => 'cpa', 'Cre09.g398067' => 'cre', 'CsaV3_3G015840' => 'csa', 'CsaV3_7G026570' => 'csa', 'CSS0007797' => 'camsi', 'CSS0012168' => 'camsi', 'CSS0031366' => 'camsi', 'CSS0033787' => 'camsi', 'CSS0046057' => 'camsi', 'DCAR_004749' => 'dca', 'DCAR_009871' => 'dca', 'DCAR_020600' => 'dca', 'Dinv30283' => 'din', 'Dinv30670' => 'din', 'Dinv34330' => 'din', 'Dinv39212' => 'din', 'Duzib093G1896' => 'dzi', 'Duzib133G0343' => 'dzi', 'Duzib138G0528' => 'dzi', 'Duzib151G0019' => 'dzi', 'Duzib211G0643' => 'dzi', 'ECA236G1971' => 'eca', 'ECA236G2728' => 'eca', 'ECA247G3328' => 'eca', 'ECA248G1653' => 'eca', 'EL10Ac3g07286' => 'bvu', 'EL10Ac7g17958' => 'bvu', 'Eucgr.F02235' => 'egr', 'Eucgr.H02629' => 'egr', 'Eucgr.K01672' => 'egr', 'Eucgr.K02110' => 'egr', 'Eucgr.L02444' => 'egr', 'FAN07G0161' => 'fan', 'FAN12G3068' => 'fan', 'FAN15G0871' => 'fan', 'FAN15G3105' => 'fan', 'FAN17G0261' => 'fan', 'FAN22G0808' => 'fan', 'FAN24G0761' => 'fan', 'FAN24G2049' => 'fan', 'FAN27G2593' => 'fan', 'FAN27G3507' => 'fan', 'FvH4_2g18150' => 'fve', 'FvH4_2g32840' => 'fve', 'FvH4_4g12830' => 'fve', 'Glyma.03G086200' => 'gma', 'Glyma.03G122100' => 'gma', 'Glyma.05G149900' => 'gma', 'Glyma.07G161750' => 'gma', 'Glyma.08G106700' => 'gma', 'Glyma.08G346700' => 'gma', 'Glyma.14G089045' => 'gma', 'Glyma.16G088000' => 'gma', 'Glyma.17G233800' => 'gma', 'Glyma.18G158100' => 'gma', 'Glyma.19G126251' => 'gma', 'Gohir.A05G211100' => 'ghi', 'Gohir.A07G091400' => 'ghi', 'Gohir.A09G208100' => 'ghi', 'Gohir.A10G130600' => 'ghi', 'Gohir.A11G140700' => 'ghi', 'Gohir.D02G018350' => 'ghi', 'Gohir.D05G214400' => 'ghi', 'Gohir.D07G096100' => 'ghi', 'Gohir.D09G201600' => 'ghi', 'Gohir.D10G135800' => 'ghi', 'Gohir.D11G147200' => 'ghi', 'Gorai.001G103400' => 'gra', 'Gorai.005G022600' => 'gra', 'Gorai.006G225400' => 'gra', 'Gorai.007G157600' => 'gra', 'Gorai.009G221100' => 'gra', 'Gorai.011G150600' => 'gra', 'GSVIVG01002527001' => 'vvi', 'GSVIVG01002899001' => 'vvi', 'GSVIVG01009318001' => 'vvi', 'GSVIVG01025799001' => 'vvi', 'HanXRQChr04g0108381' => 'han', 'HanXRQChr08g0232301' => 'han', 'HanXRQChr11g0344551' => 'han', 'Haze_03331' => 'cav', 'Haze_11686' => 'cav', 'Haze_20274' => 'cav', 'Haze_22414' => 'cav', 'Hma1.2p1_0226F.1_g095160' => 'hma', 'Hma1.2p1_1170F.1_g263350' => 'hma', 'HPP92_003172' => 'vpl', 'HPP92_025244' => 'vpl', 'Hund05289' => 'sun', 'Hund05592' => 'sun', 'Hund18462' => 'sun', 'Hund19025' => 'sun', 'Lalb_Chr12g0205901' => 'lal', 'Lalb_Chr14g0365471' => 'lal', 'Lalb_Chr19g0125951' => 'lal', 'Lalb_Chr22g0355721' => 'lal', 'Lj1A92T27' => 'lonja', 'Lj1C1082G15' => 'lonja', 'Lj1C94T2' => 'lonja', 'Lj1g0019067' => 'lja', 'Lj1g0026054' => 'lja', 'Lj2A1121T86' => 'lonja', 'Lj3g0022519' => 'lja', 'Lj4A73G44' => 'lonja', 'Lj4g0024760' => 'lja', 'Lj5g0008051' => 'lja', 'Lsat_1_v5_gn_1_19881' => 'lsa', 'Lsat_1_v5_gn_1_69221' => 'lsa', 'Lsat_1_v5_gn_2_116080' => 'lsa', 'Lsat_1_v5_gn_8_89001' => 'lsa', 'Lsat_1_v5_gn_9_17400' => 'lsa', 'Lsat_1_v5_gn_9_4960' => 'lsa', 'Lsat_1_v5_gn_9_76560' => 'lsa', 'Manes.05G198600' => 'mes', 'Manes.08G063600' => 'mes', 'Manes.12G050700' => 'mes', 'Manes.13G051764' => 'mes', 'Manes.18G047900' => 'mes', 'Mapoly0001s0304' => 'mpo', 'MBI04_g22009_MAGBIO' => 'mbi', 'MBI07_g06206_MAGBIO' => 'mbi', 'MBI11_g07397_MAGBIO' => 'mbi', 'MBI16_g37638_MAGBIO' => 'mbi', 'MCO08G129' => 'mco', 'MD04G1022400' => 'mdo', 'MD05G1166200' => 'mdo', 'MD10G1156300' => 'mdo', 'MD15G1067100' => 'mdo', 'Medtr1g017870' => 'mtr', 'Medtr7g053470' => 'mtr', 'Medtr8g008640' => 'mtr', 'Medtr8g010620' => 'mtr', 'Medtr8g011100' => 'mtr', 'Medtr8g011140' => 'mtr', 'Medtr8g012340' => 'mtr', 'Medtr8g012360' => 'mtr', 'Medtr8g038785' => 'mtr', 'Medtr8g080980' => 'mtr', 'MELO3C006783.2' => 'cme', 'MELO3C021107.2' => 'cme', 'Migut.D02482' => 'egut', 'Migut.K00158' => 'egut', 'Migut.N00645' => 'egut', 'MSTRG.10780' => 'ama', 'MSTRG.18822' => 'ama', 'MSTRG.24384' => 'ama', 'Nitab4.5_0000123g0380' => 'nta', 'Nitab4.5_0000296g0040' => 'nta', 'Nitab4.5_0000497g0050' => 'nta', 'Nitab4.5_0002671g0110' => 'nta', 'Nitab4.5_0003725g0020' => 'nta', 'Nitab4.5_0006376g0040' => 'nta', 'Nitab4.5_0010531g0020' => 'nta', 'Nitab4.5_0011877g0010' => 'nta', 'Nn1g08125' => 'nnu', 'Nn5g30635' => 'nnu', 'Nn8g39174' => 'nnu', 'Oeu003626.1' => 'oeu', 'Oeu019878.2' => 'oeu', 'Oeu029942.1' => 'oeu', 'Oeu050729.1' => 'oeu', 'Oeu053076.2' => 'oeu', 'Oeu056450.4' => 'oeu', 'Oeu057851.2' => 'oeu', 'Oeu064757.3' => 'oeu', 'Os01g0562400' => 'osa', 'Os01g0563000' => 'osa', 'Os01g0564300' => 'osa', 'Os02g0491400' => 'osa', 'Os04g0352400' => 'osa', 'Os08g0525600' => 'osa', 'Peaxi162Scf00003g05237' => 'pax', 'Peaxi162Scf00003g05239' => 'pax', 'Peaxi162Scf00081g02735' => 'pax', 'Peaxi162Scf00286g00929' => 'pax', 'Peaxi162Scf00487g00114' => 'pax', 'Peaxi162Scf01133g00014' => 'pax', 'PGR044G1772' => 'pgr', 'PGR142G3207' => 'pgr', 'PGSC0003DMG400007177' => 'stu', 'PGSC0003DMG400010624' => 'stu', 'PGSC0003DMG400020107' => 'stu', 'PGSC0003DMG400020802' => 'stu', 'PGSC0003DMG400031522' => 'stu', 'Phvul.001G029000' => 'pvu', 'Phvul.001G118200' => 'pvu', 'Phvul.003G064500' => 'pvu', 'Phvul.003G177200' => 'pvu', 'Phvul.008G133100' => 'pvu', 'Phvul.010G024500' => 'pvu', 'Potri.002G117200' => 'ptr', 'Potri.002G248300' => 'ptr', 'Potri.006G033400' => 'ptr', 'Potri.014G149400' => 'ptr', 'Potri.016G031166' => 'ptr', 'Pp3c16_920' => 'ppa', 'Pp3c19_2600' => 'ppa', 'PRCOL_00001044' => 'pco', 'PRCOL_00002965' => 'pco', 'PRCOL_00005371' => 'pco', 'Prupe.1G172600' => 'ppe', 'Prupe.1G420900' => 'ppe', 'Prupe.8G194100' => 'ppe', 'Psat3g081840' => 'psa', 'Psat3g150280' => 'psa', 'Psat4g204920' => 'psa', 'Psat6g017640' => 'psa', 'Psat7g076200' => 'psa', 'PSO017G3056' => 'pso', 'PSO210G1399' => 'pso', 'PSO210G2674' => 'pso', 'PSO423G0151' => 'pso', 'PSO423G0180' => 'pso', 'PSO541G2479' => 'pso', 'PSO596G0028' => 'pso', 'PSO675G5816' => 'pso', 'PSO675G6938' => 'pso', 'QL06p027392' => 'qlo', 'QL07p013318' => 'qlo', 'QL09p049260' => 'qlo', 'QL12p038350' => 'qlo', 'RcHm_v2.0_Chr4g0412331' => 'rch', 'RcHm_v2.0_Chr6g0283541' => 'rch', 'RcHm_v2.0_Chr6g0309861' => 'rch', 'RcHm_v2.0_Chr7g0204881' => 'rch', 'Rhsim01G0249900' => 'rsi', 'Rhsim06G0063300' => 'rsi', 'Sabra02G0091900' => 'sbr', 'Sabra02G0189000' => 'sbr', 'Sabra06G0022100' => 'sbr', 'Sabra14G0112600' => 'sbr', 'SalBow1G3833' => 'sbo', 'SalBow1G6080' => 'sbo', 'SalBow2G2341' => 'sbo', 'SalBow6G2280' => 'sbo', 'Sc17g0001910' => 'sci', 'Sc19g0007430' => 'sci', 'Sc26g0004220' => 'sci', 'Sed0005666' => 'sed', 'Sed0010939' => 'sed', 'Sed0025920' => 'sed', 'SEGI_25034' => 'sgi', 'SEGI_29388' => 'sgi', 'SGA_v2.0_scaffold152G36820' => 'sas', 'SGA_v2.0_scaffold156G37298' => 'sas', 'SGA_v2.0_scaffold19G08791' => 'sas', 'SGA_v2.0_scaffold240G44133' => 'sas', 'SMO171G0021' => 'smo', 'SMO203G0114' => 'smo', 'SMO234G0048' => 'smo', 'Solyc04g077660.3' => 'sly', 'Solyc06g083190.4' => 'sly', 'Solyc09g057660.3' => 'sly', 'Solyc09g092690.3' => 'sly', 'Solyc10g078250.1' => 'sly', 'Sopen04g031300' => 'spe', 'Sopen06g034580' => 'spe', 'Sopen09g021120' => 'spe', 'Sopen09g035620' => 'spe', 'Sopen10g028920' => 'spe', 'Sp2g18930' => 'spa', 'Sp3g22860' => 'spa', 'TAR362G0793' => 'tar', 'TAR636G2828' => 'tar', 'THA.LOC104808804' => 'tha', 'THA.LOC104818983' => 'tha', 'THA.LOC104821660' => 'tha', 'THA.LOC104822478' => 'tha', 'THA.LOC104823680' => 'tha', 'Thecc.01G215200' => 'tca', 'Thecc.04G190800' => 'tca', 'Thecc.08G086100' => 'tca', 'Thhalv10002468m.g' => 'esa', 'Thhalv10003906m.g' => 'esa', 'Thhalv10024088m.g' => 'esa', 'TPR.G11848' => 'tpr', 'TPR.G13111' => 'tpr', 'TPR.G16458' => 'tpr', 'TPR.G23183' => 'tpr', 'TPR.G29152' => 'tpr', 'TWI36G0946' => 'twi', 'TWI74G1305' => 'twi', 'TWI75G0156' => 'twi', 'unitig_0.g124' => 'ugi', 'unitig_0.g410' => 'ugi', 'unitig_746.g26596' => 'ugi', 'unitig_899.g15400' => 'ugi', 'vmacro14711' => 'vma', 'VMungo0251G3607' => 'vmu', 'VMungo0331G1976' => 'vmu', 'VMungo0647G2167' => 'vmu', 'VMungo1383G2838' => 'vmu', 'VMungo1383G3278' => 'vmu', 'Zm00001eb036130' => 'zma', 'Zm00001eb087350' => 'zma', 'Zm00001eb241230' => 'zma', 'Zm00001eb339750' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D001484', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D001484' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D001484', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '399', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001484' ) ), 'genes' => array( 'A03p44140' => 'bna', 'A06p39080' => 'bna', 'Aa31sc18G140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3862' => 'aag', 'Actinidia09454' => 'ach', 'Actinidia10211' => 'ach', 'Actinidia23376' => 'ach', 'Actinidia23776' => 'ach', 'Actinidia23777' => 'ach', 'Ah.04g150650' => 'amhyb', 'Ah.08g218900' => 'amhyb', 'Ah.11g039360' => 'amhyb', 'Ah.13g077790' => 'amhyb', 'AL2G17760' => 'aly', 'AL3G41150' => 'aly', 'AL8G19050' => 'aly', 'AL8G21550' => 'aly', 'Aqoxy4G00034' => 'aox', 'Aqoxy5G00042' => 'aox', 'Aqoxy6G02543' => 'aox', 'Aqoxy7G03853' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3F3WIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FW66N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X4Q28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90AC01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DU5DWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1KG5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNXF08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8MRPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3X144' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFY45J' => 'arhy', 'AT1G58450' => 'ath', 'AT3G25230' => 'ath', 'AT5G48570' => 'ath', 'ATR0739G132' => 'atr', 'ATR1147G036' => 'atr', 'Atru.chr1.1310' => 'acertr', 'Atru.chr13.854' => 'acertr', 'Atru.chr4.824' => 'acertr', 'Atru.chr6.1453' => 'acertr', 'AUR62001164' => 'cqu', 'AUR62002149' => 'cqu', 'AUR62018396' => 'cqu', 'AUR62022158' => 'cqu', 'AUR62030262' => 'cqu', 'BcaB08g34446' => 'bca', 'BcaB08g34451' => 'bca', 'BcaC01g03234' => 'bca', 'BcaC06g30780' => 'bca', 'BcaC06g30781' => 'bca', 'BolC3t17738H' => 'bol', 'BolC7t44446H' => 'bol', 'BraA03t13544Z' => 'bra', 'BraA06t26822Z' => 'bra', 'C03p54520' => 'bna', 'C07p39260' => 'bna', 'CAN.G1069.21' => 'can', 'CAN.G115.5' => 'can', 'CAN.G1444.1' => 'can', 'CAN.G1818.4' => 'can', 'CAN.G724.43' => 'can', 'CAN.G874.19' => 'can', 'CANSAT01G0614' => 'cansat', 'CANSAT78G1440' => 'cansat', 'CARHR101590' => 'chi', 'CARHR183440' => 'chi', 'Carub.0002s0606' => 'cru', 'Carub.0003s2563' => 'cru', 'Carub.0008s0820' => 'cru', 'Ca_07499_v3' => 'car', 'Ca_08706_v3' => 'car', 'Ca_18008_v3' => 'car', 'Ca_23206_v3' => 'car', 'CBR_g29656' => 'cbr', 'CBR_g29659' => 'cbr', 'Cc01_g16410' => 'ccan', 'Cc03_g09080' => 'ccan', 'Cc06_g20290' => 'ccan', 'Cc06_g20300' => 'ccan', 'Cc06_g20350' => 'ccan', 'Cc10_g05120' => 'ccan', 'CDE01G0210' => 'cde', 'CDE01G0720' => 'cde', 'CDE04G3404' => 'cde', 'Cfa008668' => 'cfa', 'Cfa013756' => 'cfa', 'Cfa021438' => 'cfa', 'Ciclev10003372m.g' => 'ccl', 'Ciclev10011447m.g' => 'ccl', 'Ciclev10013213m.g' => 'ccl', 'Ciclev10031088m.g' => 'ccl', 'CiPaw.01G113200' => 'cil', 'CiPaw.08G051000' => 'cil', 'CiPaw.09G051100' => 'cil', 'CiPaw.13G051700' => 'cil', 'ClCG05G007100' => 'cla', 'ClCG09G008490' => 'cla', 'COL.COLO4_28478' => 'col', 'COL.COLO4_33102' => 'col', 'COL.COLO4_35962' => 'col', 'Cpa.g.sc142.50' => 'cpa', 'Cpa.g.sc157.11' => 'cpa', 'Cpa.g.sc8.107' => 'cpa', 'Cre09.g398067' => 'cre', 'CsaV3_3G015840' => 'csa', 'CsaV3_7G026570' => 'csa', 'CSS0007797' => 'camsi', 'CSS0012168' => 'camsi', 'CSS0031366' => 'camsi', 'CSS0033787' => 'camsi', 'CSS0046057' => 'camsi', 'DCAR_004749' => 'dca', 'DCAR_009871' => 'dca', 'DCAR_020600' => 'dca', 'Dinv30283' => 'din', 'Dinv30670' => 'din', 'Dinv34330' => 'din', 'Dinv39212' => 'din', 'Duzib093G1896' => 'dzi', 'Duzib133G0343' => 'dzi', 'Duzib138G0528' => 'dzi', 'Duzib151G0019' => 'dzi', 'Duzib211G0643' => 'dzi', 'ECA236G1971' => 'eca', 'ECA236G2728' => 'eca', 'ECA247G3328' => 'eca', 'ECA248G1653' => 'eca', 'EL10Ac3g07286' => 'bvu', 'EL10Ac7g17958' => 'bvu', 'Eucgr.F02235' => 'egr', 'Eucgr.H02629' => 'egr', 'Eucgr.K01672' => 'egr', 'Eucgr.K02110' => 'egr', 'Eucgr.L02444' => 'egr', 'FAN07G0161' => 'fan', 'FAN12G3068' => 'fan', 'FAN15G0871' => 'fan', 'FAN15G3105' => 'fan', 'FAN17G0261' => 'fan', 'FAN22G0808' => 'fan', 'FAN24G0761' => 'fan', 'FAN24G2049' => 'fan', 'FAN27G2593' => 'fan', 'FAN27G3507' => 'fan', 'FvH4_2g18150' => 'fve', 'FvH4_2g32840' => 'fve', 'FvH4_4g12830' => 'fve', 'Glyma.03G086200' => 'gma', 'Glyma.03G122100' => 'gma', 'Glyma.05G149900' => 'gma', 'Glyma.07G161750' => 'gma', 'Glyma.08G106700' => 'gma', 'Glyma.08G346700' => 'gma', 'Glyma.14G089045' => 'gma', 'Glyma.16G088000' => 'gma', 'Glyma.17G233800' => 'gma', 'Glyma.18G158100' => 'gma', 'Glyma.19G126251' => 'gma', 'Gohir.A05G211100' => 'ghi', 'Gohir.A07G091400' => 'ghi', 'Gohir.A09G208100' => 'ghi', 'Gohir.A10G130600' => 'ghi', 'Gohir.A11G140700' => 'ghi', 'Gohir.D02G018350' => 'ghi', 'Gohir.D05G214400' => 'ghi', 'Gohir.D07G096100' => 'ghi', 'Gohir.D09G201600' => 'ghi', 'Gohir.D10G135800' => 'ghi', 'Gohir.D11G147200' => 'ghi', 'Gorai.001G103400' => 'gra', 'Gorai.005G022600' => 'gra', 'Gorai.006G225400' => 'gra', 'Gorai.007G157600' => 'gra', 'Gorai.009G221100' => 'gra', 'Gorai.011G150600' => 'gra', 'GSVIVG01002527001' => 'vvi', 'GSVIVG01002899001' => 'vvi', 'GSVIVG01009318001' => 'vvi', 'GSVIVG01025799001' => 'vvi', 'HanXRQChr04g0108381' => 'han', 'HanXRQChr08g0232301' => 'han', 'HanXRQChr11g0344551' => 'han', 'Haze_03331' => 'cav', 'Haze_11686' => 'cav', 'Haze_20274' => 'cav', 'Haze_22414' => 'cav', 'Hma1.2p1_0226F.1_g095160' => 'hma', 'Hma1.2p1_1170F.1_g263350' => 'hma', 'HPP92_003172' => 'vpl', 'HPP92_025244' => 'vpl', 'Hund05289' => 'sun', 'Hund05592' => 'sun', 'Hund18462' => 'sun', 'Hund19025' => 'sun', 'Lalb_Chr12g0205901' => 'lal', 'Lalb_Chr14g0365471' => 'lal', 'Lalb_Chr19g0125951' => 'lal', 'Lalb_Chr22g0355721' => 'lal', 'Lj1A92T27' => 'lonja', 'Lj1C1082G15' => 'lonja', 'Lj1C94T2' => 'lonja', 'Lj1g0019067' => 'lja', 'Lj1g0026054' => 'lja', 'Lj2A1121T86' => 'lonja', 'Lj3g0022519' => 'lja', 'Lj4A73G44' => 'lonja', 'Lj4g0024760' => 'lja', 'Lj5g0008051' => 'lja', 'Lsat_1_v5_gn_1_19881' => 'lsa', 'Lsat_1_v5_gn_1_69221' => 'lsa', 'Lsat_1_v5_gn_2_116080' => 'lsa', 'Lsat_1_v5_gn_8_89001' => 'lsa', 'Lsat_1_v5_gn_9_17400' => 'lsa', 'Lsat_1_v5_gn_9_4960' => 'lsa', 'Lsat_1_v5_gn_9_76560' => 'lsa', 'Manes.05G198600' => 'mes', 'Manes.08G063600' => 'mes', 'Manes.12G050700' => 'mes', 'Manes.13G051764' => 'mes', 'Manes.18G047900' => 'mes', 'Mapoly0001s0304' => 'mpo', 'MBI04_g22009_MAGBIO' => 'mbi', 'MBI07_g06206_MAGBIO' => 'mbi', 'MBI11_g07397_MAGBIO' => 'mbi', 'MBI16_g37638_MAGBIO' => 'mbi', 'MCO08G129' => 'mco', 'MD04G1022400' => 'mdo', 'MD05G1166200' => 'mdo', 'MD10G1156300' => 'mdo', 'MD15G1067100' => 'mdo', 'Medtr1g017870' => 'mtr', 'Medtr7g053470' => 'mtr', 'Medtr8g008640' => 'mtr', 'Medtr8g010620' => 'mtr', 'Medtr8g011100' => 'mtr', 'Medtr8g011140' => 'mtr', 'Medtr8g012340' => 'mtr', 'Medtr8g012360' => 'mtr', 'Medtr8g038785' => 'mtr', 'Medtr8g080980' => 'mtr', 'MELO3C006783.2' => 'cme', 'MELO3C021107.2' => 'cme', 'Migut.D02482' => 'egut', 'Migut.K00158' => 'egut', 'Migut.N00645' => 'egut', 'MSTRG.10780' => 'ama', 'MSTRG.18822' => 'ama', 'MSTRG.24384' => 'ama', 'Nitab4.5_0000123g0380' => 'nta', 'Nitab4.5_0000296g0040' => 'nta', 'Nitab4.5_0000497g0050' => 'nta', 'Nitab4.5_0002671g0110' => 'nta', 'Nitab4.5_0003725g0020' => 'nta', 'Nitab4.5_0006376g0040' => 'nta', 'Nitab4.5_0010531g0020' => 'nta', 'Nitab4.5_0011877g0010' => 'nta', 'Nn1g08125' => 'nnu', 'Nn5g30635' => 'nnu', 'Nn8g39174' => 'nnu', 'Oeu003626.1' => 'oeu', 'Oeu019878.2' => 'oeu', 'Oeu029942.1' => 'oeu', 'Oeu050729.1' => 'oeu', 'Oeu053076.2' => 'oeu', 'Oeu056450.4' => 'oeu', 'Oeu057851.2' => 'oeu', 'Oeu064757.3' => 'oeu', 'Os01g0562400' => 'osa', 'Os01g0563000' => 'osa', 'Os01g0564300' => 'osa', 'Os02g0491400' => 'osa', 'Os04g0352400' => 'osa', 'Os08g0525600' => 'osa', 'Peaxi162Scf00003g05237' => 'pax', 'Peaxi162Scf00003g05239' => 'pax', 'Peaxi162Scf00081g02735' => 'pax', 'Peaxi162Scf00286g00929' => 'pax', 'Peaxi162Scf00487g00114' => 'pax', 'Peaxi162Scf01133g00014' => 'pax', 'PGR044G1772' => 'pgr', 'PGR142G3207' => 'pgr', 'PGSC0003DMG400007177' => 'stu', 'PGSC0003DMG400010624' => 'stu', 'PGSC0003DMG400020107' => 'stu', 'PGSC0003DMG400020802' => 'stu', 'PGSC0003DMG400031522' => 'stu', 'Phvul.001G029000' => 'pvu', 'Phvul.001G118200' => 'pvu', 'Phvul.003G064500' => 'pvu', 'Phvul.003G177200' => 'pvu', 'Phvul.008G133100' => 'pvu', 'Phvul.010G024500' => 'pvu', 'Potri.002G117200' => 'ptr', 'Potri.002G248300' => 'ptr', 'Potri.006G033400' => 'ptr', 'Potri.014G149400' => 'ptr', 'Potri.016G031166' => 'ptr', 'Pp3c16_920' => 'ppa', 'Pp3c19_2600' => 'ppa', 'PRCOL_00001044' => 'pco', 'PRCOL_00002965' => 'pco', 'PRCOL_00005371' => 'pco', 'Prupe.1G172600' => 'ppe', 'Prupe.1G420900' => 'ppe', 'Prupe.8G194100' => 'ppe', 'Psat3g081840' => 'psa', 'Psat3g150280' => 'psa', 'Psat4g204920' => 'psa', 'Psat6g017640' => 'psa', 'Psat7g076200' => 'psa', 'PSO017G3056' => 'pso', 'PSO210G1399' => 'pso', 'PSO210G2674' => 'pso', 'PSO423G0151' => 'pso', 'PSO423G0180' => 'pso', 'PSO541G2479' => 'pso', 'PSO596G0028' => 'pso', 'PSO675G5816' => 'pso', 'PSO675G6938' => 'pso', 'QL06p027392' => 'qlo', 'QL07p013318' => 'qlo', 'QL09p049260' => 'qlo', 'QL12p038350' => 'qlo', 'RcHm_v2.0_Chr4g0412331' => 'rch', 'RcHm_v2.0_Chr6g0283541' => 'rch', 'RcHm_v2.0_Chr6g0309861' => 'rch', 'RcHm_v2.0_Chr7g0204881' => 'rch', 'Rhsim01G0249900' => 'rsi', 'Rhsim06G0063300' => 'rsi', 'Sabra02G0091900' => 'sbr', 'Sabra02G0189000' => 'sbr', 'Sabra06G0022100' => 'sbr', 'Sabra14G0112600' => 'sbr', 'SalBow1G3833' => 'sbo', 'SalBow1G6080' => 'sbo', 'SalBow2G2341' => 'sbo', 'SalBow6G2280' => 'sbo', 'Sc17g0001910' => 'sci', 'Sc19g0007430' => 'sci', 'Sc26g0004220' => 'sci', 'Sed0005666' => 'sed', 'Sed0010939' => 'sed', 'Sed0025920' => 'sed', 'SEGI_25034' => 'sgi', 'SEGI_29388' => 'sgi', 'SGA_v2.0_scaffold152G36820' => 'sas', 'SGA_v2.0_scaffold156G37298' => 'sas', 'SGA_v2.0_scaffold19G08791' => 'sas', 'SGA_v2.0_scaffold240G44133' => 'sas', 'SMO171G0021' => 'smo', 'SMO203G0114' => 'smo', 'SMO234G0048' => 'smo', 'Solyc04g077660.3' => 'sly', 'Solyc06g083190.4' => 'sly', 'Solyc09g057660.3' => 'sly', 'Solyc09g092690.3' => 'sly', 'Solyc10g078250.1' => 'sly', 'Sopen04g031300' => 'spe', 'Sopen06g034580' => 'spe', 'Sopen09g021120' => 'spe', 'Sopen09g035620' => 'spe', 'Sopen10g028920' => 'spe', 'Sp2g18930' => 'spa', 'Sp3g22860' => 'spa', 'TAR362G0793' => 'tar', 'TAR636G2828' => 'tar', 'THA.LOC104808804' => 'tha', 'THA.LOC104818983' => 'tha', 'THA.LOC104821660' => 'tha', 'THA.LOC104822478' => 'tha', 'THA.LOC104823680' => 'tha', 'Thecc.01G215200' => 'tca', 'Thecc.04G190800' => 'tca', 'Thecc.08G086100' => 'tca', 'Thhalv10002468m.g' => 'esa', 'Thhalv10003906m.g' => 'esa', 'Thhalv10024088m.g' => 'esa', 'TPR.G11848' => 'tpr', 'TPR.G13111' => 'tpr', 'TPR.G16458' => 'tpr', 'TPR.G23183' => 'tpr', 'TPR.G29152' => 'tpr', 'TWI36G0946' => 'twi', 'TWI74G1305' => 'twi', 'TWI75G0156' => 'twi', 'unitig_0.g124' => 'ugi', 'unitig_0.g410' => 'ugi', 'unitig_746.g26596' => 'ugi', 'unitig_899.g15400' => 'ugi', 'vmacro14711' => 'vma', 'VMungo0251G3607' => 'vmu', 'VMungo0331G1976' => 'vmu', 'VMungo0647G2167' => 'vmu', 'VMungo1383G2838' => 'vmu', 'VMungo1383G3278' => 'vmu', 'Zm00001eb036130' => 'zma', 'Zm00001eb087350' => 'zma', 'Zm00001eb241230' => 'zma', 'Zm00001eb339750' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D001484' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D001484' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D001484' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001484' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D001484', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '399', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p44140' => 'bna', 'A06p39080' => 'bna', 'Aa31sc18G140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3862' => 'aag', 'Actinidia09454' => 'ach', 'Actinidia10211' => 'ach', 'Actinidia23376' => 'ach', 'Actinidia23776' => 'ach', 'Actinidia23777' => 'ach', 'Ah.04g150650' => 'amhyb', 'Ah.08g218900' => 'amhyb', 'Ah.11g039360' => 'amhyb', 'Ah.13g077790' => 'amhyb', 'AL2G17760' => 'aly', 'AL3G41150' => 'aly', 'AL8G19050' => 'aly', 'AL8G21550' => 'aly', 'Aqoxy4G00034' => 'aox', 'Aqoxy5G00042' => 'aox', 'Aqoxy6G02543' => 'aox', 'Aqoxy7G03853' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3F3WIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FW66N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X4Q28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90AC01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DU5DWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1KG5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNXF08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8MRPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3X144' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFY45J' => 'arhy', 'AT1G58450' => 'ath', 'AT3G25230' => 'ath', 'AT5G48570' => 'ath', 'ATR0739G132' => 'atr', 'ATR1147G036' => 'atr', 'Atru.chr1.1310' => 'acertr', 'Atru.chr13.854' => 'acertr', 'Atru.chr4.824' => 'acertr', 'Atru.chr6.1453' => 'acertr', 'AUR62001164' => 'cqu', 'AUR62002149' => 'cqu', 'AUR62018396' => 'cqu', 'AUR62022158' => 'cqu', 'AUR62030262' => 'cqu', 'BcaB08g34446' => 'bca', 'BcaB08g34451' => 'bca', 'BcaC01g03234' => 'bca', 'BcaC06g30780' => 'bca', 'BcaC06g30781' => 'bca', 'BolC3t17738H' => 'bol', 'BolC7t44446H' => 'bol', 'BraA03t13544Z' => 'bra', 'BraA06t26822Z' => 'bra', 'C03p54520' => 'bna', 'C07p39260' => 'bna', 'CAN.G1069.21' => 'can', 'CAN.G115.5' => 'can', 'CAN.G1444.1' => 'can', 'CAN.G1818.4' => 'can', 'CAN.G724.43' => 'can', 'CAN.G874.19' => 'can', 'CANSAT01G0614' => 'cansat', 'CANSAT78G1440' => 'cansat', 'CARHR101590' => 'chi', 'CARHR183440' => 'chi', 'Carub.0002s0606' => 'cru', 'Carub.0003s2563' => 'cru', 'Carub.0008s0820' => 'cru', 'Ca_07499_v3' => 'car', 'Ca_08706_v3' => 'car', 'Ca_18008_v3' => 'car', 'Ca_23206_v3' => 'car', 'CBR_g29656' => 'cbr', 'CBR_g29659' => 'cbr', 'Cc01_g16410' => 'ccan', 'Cc03_g09080' => 'ccan', 'Cc06_g20290' => 'ccan', 'Cc06_g20300' => 'ccan', 'Cc06_g20350' => 'ccan', 'Cc10_g05120' => 'ccan', 'CDE01G0210' => 'cde', 'CDE01G0720' => 'cde', 'CDE04G3404' => 'cde', 'Cfa008668' => 'cfa', 'Cfa013756' => 'cfa', 'Cfa021438' => 'cfa', 'Ciclev10003372m.g' => 'ccl', 'Ciclev10011447m.g' => 'ccl', 'Ciclev10013213m.g' => 'ccl', 'Ciclev10031088m.g' => 'ccl', 'CiPaw.01G113200' => 'cil', 'CiPaw.08G051000' => 'cil', 'CiPaw.09G051100' => 'cil', 'CiPaw.13G051700' => 'cil', 'ClCG05G007100' => 'cla', 'ClCG09G008490' => 'cla', 'COL.COLO4_28478' => 'col', 'COL.COLO4_33102' => 'col', 'COL.COLO4_35962' => 'col', 'Cpa.g.sc142.50' => 'cpa', 'Cpa.g.sc157.11' => 'cpa', 'Cpa.g.sc8.107' => 'cpa', 'Cre09.g398067' => 'cre', 'CsaV3_3G015840' => 'csa', 'CsaV3_7G026570' => 'csa', 'CSS0007797' => 'camsi', 'CSS0012168' => 'camsi', 'CSS0031366' => 'camsi', 'CSS0033787' => 'camsi', 'CSS0046057' => 'camsi', 'DCAR_004749' => 'dca', 'DCAR_009871' => 'dca', 'DCAR_020600' => 'dca', 'Dinv30283' => 'din', 'Dinv30670' => 'din', 'Dinv34330' => 'din', 'Dinv39212' => 'din', 'Duzib093G1896' => 'dzi', 'Duzib133G0343' => 'dzi', 'Duzib138G0528' => 'dzi', 'Duzib151G0019' => 'dzi', 'Duzib211G0643' => 'dzi', 'ECA236G1971' => 'eca', 'ECA236G2728' => 'eca', 'ECA247G3328' => 'eca', 'ECA248G1653' => 'eca', 'EL10Ac3g07286' => 'bvu', 'EL10Ac7g17958' => 'bvu', 'Eucgr.F02235' => 'egr', 'Eucgr.H02629' => 'egr', 'Eucgr.K01672' => 'egr', 'Eucgr.K02110' => 'egr', 'Eucgr.L02444' => 'egr', 'FAN07G0161' => 'fan', 'FAN12G3068' => 'fan', 'FAN15G0871' => 'fan', 'FAN15G3105' => 'fan', 'FAN17G0261' => 'fan', 'FAN22G0808' => 'fan', 'FAN24G0761' => 'fan', 'FAN24G2049' => 'fan', 'FAN27G2593' => 'fan', 'FAN27G3507' => 'fan', 'FvH4_2g18150' => 'fve', 'FvH4_2g32840' => 'fve', 'FvH4_4g12830' => 'fve', 'Glyma.03G086200' => 'gma', 'Glyma.03G122100' => 'gma', 'Glyma.05G149900' => 'gma', 'Glyma.07G161750' => 'gma', 'Glyma.08G106700' => 'gma', 'Glyma.08G346700' => 'gma', 'Glyma.14G089045' => 'gma', 'Glyma.16G088000' => 'gma', 'Glyma.17G233800' => 'gma', 'Glyma.18G158100' => 'gma', 'Glyma.19G126251' => 'gma', 'Gohir.A05G211100' => 'ghi', 'Gohir.A07G091400' => 'ghi', 'Gohir.A09G208100' => 'ghi', 'Gohir.A10G130600' => 'ghi', 'Gohir.A11G140700' => 'ghi', 'Gohir.D02G018350' => 'ghi', 'Gohir.D05G214400' => 'ghi', 'Gohir.D07G096100' => 'ghi', 'Gohir.D09G201600' => 'ghi', 'Gohir.D10G135800' => 'ghi', 'Gohir.D11G147200' => 'ghi', 'Gorai.001G103400' => 'gra', 'Gorai.005G022600' => 'gra', 'Gorai.006G225400' => 'gra', 'Gorai.007G157600' => 'gra', 'Gorai.009G221100' => 'gra', 'Gorai.011G150600' => 'gra', 'GSVIVG01002527001' => 'vvi', 'GSVIVG01002899001' => 'vvi', 'GSVIVG01009318001' => 'vvi', 'GSVIVG01025799001' => 'vvi', 'HanXRQChr04g0108381' => 'han', 'HanXRQChr08g0232301' => 'han', 'HanXRQChr11g0344551' => 'han', 'Haze_03331' => 'cav', 'Haze_11686' => 'cav', 'Haze_20274' => 'cav', 'Haze_22414' => 'cav', 'Hma1.2p1_0226F.1_g095160' => 'hma', 'Hma1.2p1_1170F.1_g263350' => 'hma', 'HPP92_003172' => 'vpl', 'HPP92_025244' => 'vpl', 'Hund05289' => 'sun', 'Hund05592' => 'sun', 'Hund18462' => 'sun', 'Hund19025' => 'sun', 'Lalb_Chr12g0205901' => 'lal', 'Lalb_Chr14g0365471' => 'lal', 'Lalb_Chr19g0125951' => 'lal', 'Lalb_Chr22g0355721' => 'lal', 'Lj1A92T27' => 'lonja', 'Lj1C1082G15' => 'lonja', 'Lj1C94T2' => 'lonja', 'Lj1g0019067' => 'lja', 'Lj1g0026054' => 'lja', 'Lj2A1121T86' => 'lonja', 'Lj3g0022519' => 'lja', 'Lj4A73G44' => 'lonja', 'Lj4g0024760' => 'lja', 'Lj5g0008051' => 'lja', 'Lsat_1_v5_gn_1_19881' => 'lsa', 'Lsat_1_v5_gn_1_69221' => 'lsa', 'Lsat_1_v5_gn_2_116080' => 'lsa', 'Lsat_1_v5_gn_8_89001' => 'lsa', 'Lsat_1_v5_gn_9_17400' => 'lsa', 'Lsat_1_v5_gn_9_4960' => 'lsa', 'Lsat_1_v5_gn_9_76560' => 'lsa', 'Manes.05G198600' => 'mes', 'Manes.08G063600' => 'mes', 'Manes.12G050700' => 'mes', 'Manes.13G051764' => 'mes', 'Manes.18G047900' => 'mes', 'Mapoly0001s0304' => 'mpo', 'MBI04_g22009_MAGBIO' => 'mbi', 'MBI07_g06206_MAGBIO' => 'mbi', 'MBI11_g07397_MAGBIO' => 'mbi', 'MBI16_g37638_MAGBIO' => 'mbi', 'MCO08G129' => 'mco', 'MD04G1022400' => 'mdo', 'MD05G1166200' => 'mdo', 'MD10G1156300' => 'mdo', 'MD15G1067100' => 'mdo', 'Medtr1g017870' => 'mtr', 'Medtr7g053470' => 'mtr', 'Medtr8g008640' => 'mtr', 'Medtr8g010620' => 'mtr', 'Medtr8g011100' => 'mtr', 'Medtr8g011140' => 'mtr', 'Medtr8g012340' => 'mtr', 'Medtr8g012360' => 'mtr', 'Medtr8g038785' => 'mtr', 'Medtr8g080980' => 'mtr', 'MELO3C006783.2' => 'cme', 'MELO3C021107.2' => 'cme', 'Migut.D02482' => 'egut', 'Migut.K00158' => 'egut', 'Migut.N00645' => 'egut', 'MSTRG.10780' => 'ama', 'MSTRG.18822' => 'ama', 'MSTRG.24384' => 'ama', 'Nitab4.5_0000123g0380' => 'nta', 'Nitab4.5_0000296g0040' => 'nta', 'Nitab4.5_0000497g0050' => 'nta', 'Nitab4.5_0002671g0110' => 'nta', 'Nitab4.5_0003725g0020' => 'nta', 'Nitab4.5_0006376g0040' => 'nta', 'Nitab4.5_0010531g0020' => 'nta', 'Nitab4.5_0011877g0010' => 'nta', 'Nn1g08125' => 'nnu', 'Nn5g30635' => 'nnu', 'Nn8g39174' => 'nnu', 'Oeu003626.1' => 'oeu', 'Oeu019878.2' => 'oeu', 'Oeu029942.1' => 'oeu', 'Oeu050729.1' => 'oeu', 'Oeu053076.2' => 'oeu', 'Oeu056450.4' => 'oeu', 'Oeu057851.2' => 'oeu', 'Oeu064757.3' => 'oeu', 'Os01g0562400' => 'osa', 'Os01g0563000' => 'osa', 'Os01g0564300' => 'osa', 'Os02g0491400' => 'osa', 'Os04g0352400' => 'osa', 'Os08g0525600' => 'osa', 'Peaxi162Scf00003g05237' => 'pax', 'Peaxi162Scf00003g05239' => 'pax', 'Peaxi162Scf00081g02735' => 'pax', 'Peaxi162Scf00286g00929' => 'pax', 'Peaxi162Scf00487g00114' => 'pax', 'Peaxi162Scf01133g00014' => 'pax', 'PGR044G1772' => 'pgr', 'PGR142G3207' => 'pgr', 'PGSC0003DMG400007177' => 'stu', 'PGSC0003DMG400010624' => 'stu', 'PGSC0003DMG400020107' => 'stu', 'PGSC0003DMG400020802' => 'stu', 'PGSC0003DMG400031522' => 'stu', 'Phvul.001G029000' => 'pvu', 'Phvul.001G118200' => 'pvu', 'Phvul.003G064500' => 'pvu', 'Phvul.003G177200' => 'pvu', 'Phvul.008G133100' => 'pvu', 'Phvul.010G024500' => 'pvu', 'Potri.002G117200' => 'ptr', 'Potri.002G248300' => 'ptr', 'Potri.006G033400' => 'ptr', 'Potri.014G149400' => 'ptr', 'Potri.016G031166' => 'ptr', 'Pp3c16_920' => 'ppa', 'Pp3c19_2600' => 'ppa', 'PRCOL_00001044' => 'pco', 'PRCOL_00002965' => 'pco', 'PRCOL_00005371' => 'pco', 'Prupe.1G172600' => 'ppe', 'Prupe.1G420900' => 'ppe', 'Prupe.8G194100' => 'ppe', 'Psat3g081840' => 'psa', 'Psat3g150280' => 'psa', 'Psat4g204920' => 'psa', 'Psat6g017640' => 'psa', 'Psat7g076200' => 'psa', 'PSO017G3056' => 'pso', 'PSO210G1399' => 'pso', 'PSO210G2674' => 'pso', 'PSO423G0151' => 'pso', 'PSO423G0180' => 'pso', 'PSO541G2479' => 'pso', 'PSO596G0028' => 'pso', 'PSO675G5816' => 'pso', 'PSO675G6938' => 'pso', 'QL06p027392' => 'qlo', 'QL07p013318' => 'qlo', 'QL09p049260' => 'qlo', 'QL12p038350' => 'qlo', 'RcHm_v2.0_Chr4g0412331' => 'rch', 'RcHm_v2.0_Chr6g0283541' => 'rch', 'RcHm_v2.0_Chr6g0309861' => 'rch', 'RcHm_v2.0_Chr7g0204881' => 'rch', 'Rhsim01G0249900' => 'rsi', 'Rhsim06G0063300' => 'rsi', 'Sabra02G0091900' => 'sbr', 'Sabra02G0189000' => 'sbr', 'Sabra06G0022100' => 'sbr', 'Sabra14G0112600' => 'sbr', 'SalBow1G3833' => 'sbo', 'SalBow1G6080' => 'sbo', 'SalBow2G2341' => 'sbo', 'SalBow6G2280' => 'sbo', 'Sc17g0001910' => 'sci', 'Sc19g0007430' => 'sci', 'Sc26g0004220' => 'sci', 'Sed0005666' => 'sed', 'Sed0010939' => 'sed', 'Sed0025920' => 'sed', 'SEGI_25034' => 'sgi', 'SEGI_29388' => 'sgi', 'SGA_v2.0_scaffold152G36820' => 'sas', 'SGA_v2.0_scaffold156G37298' => 'sas', 'SGA_v2.0_scaffold19G08791' => 'sas', 'SGA_v2.0_scaffold240G44133' => 'sas', 'SMO171G0021' => 'smo', 'SMO203G0114' => 'smo', 'SMO234G0048' => 'smo', 'Solyc04g077660.3' => 'sly', 'Solyc06g083190.4' => 'sly', 'Solyc09g057660.3' => 'sly', 'Solyc09g092690.3' => 'sly', 'Solyc10g078250.1' => 'sly', 'Sopen04g031300' => 'spe', 'Sopen06g034580' => 'spe', 'Sopen09g021120' => 'spe', 'Sopen09g035620' => 'spe', 'Sopen10g028920' => 'spe', 'Sp2g18930' => 'spa', 'Sp3g22860' => 'spa', 'TAR362G0793' => 'tar', 'TAR636G2828' => 'tar', 'THA.LOC104808804' => 'tha', 'THA.LOC104818983' => 'tha', 'THA.LOC104821660' => 'tha', 'THA.LOC104822478' => 'tha', 'THA.LOC104823680' => 'tha', 'Thecc.01G215200' => 'tca', 'Thecc.04G190800' => 'tca', 'Thecc.08G086100' => 'tca', 'Thhalv10002468m.g' => 'esa', 'Thhalv10003906m.g' => 'esa', 'Thhalv10024088m.g' => 'esa', 'TPR.G11848' => 'tpr', 'TPR.G13111' => 'tpr', 'TPR.G16458' => 'tpr', 'TPR.G23183' => 'tpr', 'TPR.G29152' => 'tpr', 'TWI36G0946' => 'twi', 'TWI74G1305' => 'twi', 'TWI75G0156' => 'twi', 'unitig_0.g124' => 'ugi', 'unitig_0.g410' => 'ugi', 'unitig_746.g26596' => 'ugi', 'unitig_899.g15400' => 'ugi', 'vmacro14711' => 'vma', 'VMungo0251G3607' => 'vmu', 'VMungo0331G1976' => 'vmu', 'VMungo0647G2167' => 'vmu', 'VMungo1383G2838' => 'vmu', 'VMungo1383G3278' => 'vmu', 'Zm00001eb036130' => 'zma', 'Zm00001eb087350' => 'zma', 'Zm00001eb241230' => 'zma', 'Zm00001eb339750' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D001484', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D001484' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D001484', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '399', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001484' ) ), 'genes' => array( 'A03p44140' => 'bna', 'A06p39080' => 'bna', 'Aa31sc18G140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3862' => 'aag', 'Actinidia09454' => 'ach', 'Actinidia10211' => 'ach', 'Actinidia23376' => 'ach', 'Actinidia23776' => 'ach', 'Actinidia23777' => 'ach', 'Ah.04g150650' => 'amhyb', 'Ah.08g218900' => 'amhyb', 'Ah.11g039360' => 'amhyb', 'Ah.13g077790' => 'amhyb', 'AL2G17760' => 'aly', 'AL3G41150' => 'aly', 'AL8G19050' => 'aly', 'AL8G21550' => 'aly', 'Aqoxy4G00034' => 'aox', 'Aqoxy5G00042' => 'aox', 'Aqoxy6G02543' => 'aox', 'Aqoxy7G03853' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3F3WIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FW66N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X4Q28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90AC01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DU5DWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1KG5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNXF08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8MRPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3X144' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFY45J' => 'arhy', 'AT1G58450' => 'ath', 'AT3G25230' => 'ath', 'AT5G48570' => 'ath', 'ATR0739G132' => 'atr', 'ATR1147G036' => 'atr', 'Atru.chr1.1310' => 'acertr', 'Atru.chr13.854' => 'acertr', 'Atru.chr4.824' => 'acertr', 'Atru.chr6.1453' => 'acertr', 'AUR62001164' => 'cqu', 'AUR62002149' => 'cqu', 'AUR62018396' => 'cqu', 'AUR62022158' => 'cqu', 'AUR62030262' => 'cqu', 'BcaB08g34446' => 'bca', 'BcaB08g34451' => 'bca', 'BcaC01g03234' => 'bca', 'BcaC06g30780' => 'bca', 'BcaC06g30781' => 'bca', 'BolC3t17738H' => 'bol', 'BolC7t44446H' => 'bol', 'BraA03t13544Z' => 'bra', 'BraA06t26822Z' => 'bra', 'C03p54520' => 'bna', 'C07p39260' => 'bna', 'CAN.G1069.21' => 'can', 'CAN.G115.5' => 'can', 'CAN.G1444.1' => 'can', 'CAN.G1818.4' => 'can', 'CAN.G724.43' => 'can', 'CAN.G874.19' => 'can', 'CANSAT01G0614' => 'cansat', 'CANSAT78G1440' => 'cansat', 'CARHR101590' => 'chi', 'CARHR183440' => 'chi', 'Carub.0002s0606' => 'cru', 'Carub.0003s2563' => 'cru', 'Carub.0008s0820' => 'cru', 'Ca_07499_v3' => 'car', 'Ca_08706_v3' => 'car', 'Ca_18008_v3' => 'car', 'Ca_23206_v3' => 'car', 'CBR_g29656' => 'cbr', 'CBR_g29659' => 'cbr', 'Cc01_g16410' => 'ccan', 'Cc03_g09080' => 'ccan', 'Cc06_g20290' => 'ccan', 'Cc06_g20300' => 'ccan', 'Cc06_g20350' => 'ccan', 'Cc10_g05120' => 'ccan', 'CDE01G0210' => 'cde', 'CDE01G0720' => 'cde', 'CDE04G3404' => 'cde', 'Cfa008668' => 'cfa', 'Cfa013756' => 'cfa', 'Cfa021438' => 'cfa', 'Ciclev10003372m.g' => 'ccl', 'Ciclev10011447m.g' => 'ccl', 'Ciclev10013213m.g' => 'ccl', 'Ciclev10031088m.g' => 'ccl', 'CiPaw.01G113200' => 'cil', 'CiPaw.08G051000' => 'cil', 'CiPaw.09G051100' => 'cil', 'CiPaw.13G051700' => 'cil', 'ClCG05G007100' => 'cla', 'ClCG09G008490' => 'cla', 'COL.COLO4_28478' => 'col', 'COL.COLO4_33102' => 'col', 'COL.COLO4_35962' => 'col', 'Cpa.g.sc142.50' => 'cpa', 'Cpa.g.sc157.11' => 'cpa', 'Cpa.g.sc8.107' => 'cpa', 'Cre09.g398067' => 'cre', 'CsaV3_3G015840' => 'csa', 'CsaV3_7G026570' => 'csa', 'CSS0007797' => 'camsi', 'CSS0012168' => 'camsi', 'CSS0031366' => 'camsi', 'CSS0033787' => 'camsi', 'CSS0046057' => 'camsi', 'DCAR_004749' => 'dca', 'DCAR_009871' => 'dca', 'DCAR_020600' => 'dca', 'Dinv30283' => 'din', 'Dinv30670' => 'din', 'Dinv34330' => 'din', 'Dinv39212' => 'din', 'Duzib093G1896' => 'dzi', 'Duzib133G0343' => 'dzi', 'Duzib138G0528' => 'dzi', 'Duzib151G0019' => 'dzi', 'Duzib211G0643' => 'dzi', 'ECA236G1971' => 'eca', 'ECA236G2728' => 'eca', 'ECA247G3328' => 'eca', 'ECA248G1653' => 'eca', 'EL10Ac3g07286' => 'bvu', 'EL10Ac7g17958' => 'bvu', 'Eucgr.F02235' => 'egr', 'Eucgr.H02629' => 'egr', 'Eucgr.K01672' => 'egr', 'Eucgr.K02110' => 'egr', 'Eucgr.L02444' => 'egr', 'FAN07G0161' => 'fan', 'FAN12G3068' => 'fan', 'FAN15G0871' => 'fan', 'FAN15G3105' => 'fan', 'FAN17G0261' => 'fan', 'FAN22G0808' => 'fan', 'FAN24G0761' => 'fan', 'FAN24G2049' => 'fan', 'FAN27G2593' => 'fan', 'FAN27G3507' => 'fan', 'FvH4_2g18150' => 'fve', 'FvH4_2g32840' => 'fve', 'FvH4_4g12830' => 'fve', 'Glyma.03G086200' => 'gma', 'Glyma.03G122100' => 'gma', 'Glyma.05G149900' => 'gma', 'Glyma.07G161750' => 'gma', 'Glyma.08G106700' => 'gma', 'Glyma.08G346700' => 'gma', 'Glyma.14G089045' => 'gma', 'Glyma.16G088000' => 'gma', 'Glyma.17G233800' => 'gma', 'Glyma.18G158100' => 'gma', 'Glyma.19G126251' => 'gma', 'Gohir.A05G211100' => 'ghi', 'Gohir.A07G091400' => 'ghi', 'Gohir.A09G208100' => 'ghi', 'Gohir.A10G130600' => 'ghi', 'Gohir.A11G140700' => 'ghi', 'Gohir.D02G018350' => 'ghi', 'Gohir.D05G214400' => 'ghi', 'Gohir.D07G096100' => 'ghi', 'Gohir.D09G201600' => 'ghi', 'Gohir.D10G135800' => 'ghi', 'Gohir.D11G147200' => 'ghi', 'Gorai.001G103400' => 'gra', 'Gorai.005G022600' => 'gra', 'Gorai.006G225400' => 'gra', 'Gorai.007G157600' => 'gra', 'Gorai.009G221100' => 'gra', 'Gorai.011G150600' => 'gra', 'GSVIVG01002527001' => 'vvi', 'GSVIVG01002899001' => 'vvi', 'GSVIVG01009318001' => 'vvi', 'GSVIVG01025799001' => 'vvi', 'HanXRQChr04g0108381' => 'han', 'HanXRQChr08g0232301' => 'han', 'HanXRQChr11g0344551' => 'han', 'Haze_03331' => 'cav', 'Haze_11686' => 'cav', 'Haze_20274' => 'cav', 'Haze_22414' => 'cav', 'Hma1.2p1_0226F.1_g095160' => 'hma', 'Hma1.2p1_1170F.1_g263350' => 'hma', 'HPP92_003172' => 'vpl', 'HPP92_025244' => 'vpl', 'Hund05289' => 'sun', 'Hund05592' => 'sun', 'Hund18462' => 'sun', 'Hund19025' => 'sun', 'Lalb_Chr12g0205901' => 'lal', 'Lalb_Chr14g0365471' => 'lal', 'Lalb_Chr19g0125951' => 'lal', 'Lalb_Chr22g0355721' => 'lal', 'Lj1A92T27' => 'lonja', 'Lj1C1082G15' => 'lonja', 'Lj1C94T2' => 'lonja', 'Lj1g0019067' => 'lja', 'Lj1g0026054' => 'lja', 'Lj2A1121T86' => 'lonja', 'Lj3g0022519' => 'lja', 'Lj4A73G44' => 'lonja', 'Lj4g0024760' => 'lja', 'Lj5g0008051' => 'lja', 'Lsat_1_v5_gn_1_19881' => 'lsa', 'Lsat_1_v5_gn_1_69221' => 'lsa', 'Lsat_1_v5_gn_2_116080' => 'lsa', 'Lsat_1_v5_gn_8_89001' => 'lsa', 'Lsat_1_v5_gn_9_17400' => 'lsa', 'Lsat_1_v5_gn_9_4960' => 'lsa', 'Lsat_1_v5_gn_9_76560' => 'lsa', 'Manes.05G198600' => 'mes', 'Manes.08G063600' => 'mes', 'Manes.12G050700' => 'mes', 'Manes.13G051764' => 'mes', 'Manes.18G047900' => 'mes', 'Mapoly0001s0304' => 'mpo', 'MBI04_g22009_MAGBIO' => 'mbi', 'MBI07_g06206_MAGBIO' => 'mbi', 'MBI11_g07397_MAGBIO' => 'mbi', 'MBI16_g37638_MAGBIO' => 'mbi', 'MCO08G129' => 'mco', 'MD04G1022400' => 'mdo', 'MD05G1166200' => 'mdo', 'MD10G1156300' => 'mdo', 'MD15G1067100' => 'mdo', 'Medtr1g017870' => 'mtr', 'Medtr7g053470' => 'mtr', 'Medtr8g008640' => 'mtr', 'Medtr8g010620' => 'mtr', 'Medtr8g011100' => 'mtr', 'Medtr8g011140' => 'mtr', 'Medtr8g012340' => 'mtr', 'Medtr8g012360' => 'mtr', 'Medtr8g038785' => 'mtr', 'Medtr8g080980' => 'mtr', 'MELO3C006783.2' => 'cme', 'MELO3C021107.2' => 'cme', 'Migut.D02482' => 'egut', 'Migut.K00158' => 'egut', 'Migut.N00645' => 'egut', 'MSTRG.10780' => 'ama', 'MSTRG.18822' => 'ama', 'MSTRG.24384' => 'ama', 'Nitab4.5_0000123g0380' => 'nta', 'Nitab4.5_0000296g0040' => 'nta', 'Nitab4.5_0000497g0050' => 'nta', 'Nitab4.5_0002671g0110' => 'nta', 'Nitab4.5_0003725g0020' => 'nta', 'Nitab4.5_0006376g0040' => 'nta', 'Nitab4.5_0010531g0020' => 'nta', 'Nitab4.5_0011877g0010' => 'nta', 'Nn1g08125' => 'nnu', 'Nn5g30635' => 'nnu', 'Nn8g39174' => 'nnu', 'Oeu003626.1' => 'oeu', 'Oeu019878.2' => 'oeu', 'Oeu029942.1' => 'oeu', 'Oeu050729.1' => 'oeu', 'Oeu053076.2' => 'oeu', 'Oeu056450.4' => 'oeu', 'Oeu057851.2' => 'oeu', 'Oeu064757.3' => 'oeu', 'Os01g0562400' => 'osa', 'Os01g0563000' => 'osa', 'Os01g0564300' => 'osa', 'Os02g0491400' => 'osa', 'Os04g0352400' => 'osa', 'Os08g0525600' => 'osa', 'Peaxi162Scf00003g05237' => 'pax', 'Peaxi162Scf00003g05239' => 'pax', 'Peaxi162Scf00081g02735' => 'pax', 'Peaxi162Scf00286g00929' => 'pax', 'Peaxi162Scf00487g00114' => 'pax', 'Peaxi162Scf01133g00014' => 'pax', 'PGR044G1772' => 'pgr', 'PGR142G3207' => 'pgr', 'PGSC0003DMG400007177' => 'stu', 'PGSC0003DMG400010624' => 'stu', 'PGSC0003DMG400020107' => 'stu', 'PGSC0003DMG400020802' => 'stu', 'PGSC0003DMG400031522' => 'stu', 'Phvul.001G029000' => 'pvu', 'Phvul.001G118200' => 'pvu', 'Phvul.003G064500' => 'pvu', 'Phvul.003G177200' => 'pvu', 'Phvul.008G133100' => 'pvu', 'Phvul.010G024500' => 'pvu', 'Potri.002G117200' => 'ptr', 'Potri.002G248300' => 'ptr', 'Potri.006G033400' => 'ptr', 'Potri.014G149400' => 'ptr', 'Potri.016G031166' => 'ptr', 'Pp3c16_920' => 'ppa', 'Pp3c19_2600' => 'ppa', 'PRCOL_00001044' => 'pco', 'PRCOL_00002965' => 'pco', 'PRCOL_00005371' => 'pco', 'Prupe.1G172600' => 'ppe', 'Prupe.1G420900' => 'ppe', 'Prupe.8G194100' => 'ppe', 'Psat3g081840' => 'psa', 'Psat3g150280' => 'psa', 'Psat4g204920' => 'psa', 'Psat6g017640' => 'psa', 'Psat7g076200' => 'psa', 'PSO017G3056' => 'pso', 'PSO210G1399' => 'pso', 'PSO210G2674' => 'pso', 'PSO423G0151' => 'pso', 'PSO423G0180' => 'pso', 'PSO541G2479' => 'pso', 'PSO596G0028' => 'pso', 'PSO675G5816' => 'pso', 'PSO675G6938' => 'pso', 'QL06p027392' => 'qlo', 'QL07p013318' => 'qlo', 'QL09p049260' => 'qlo', 'QL12p038350' => 'qlo', 'RcHm_v2.0_Chr4g0412331' => 'rch', 'RcHm_v2.0_Chr6g0283541' => 'rch', 'RcHm_v2.0_Chr6g0309861' => 'rch', 'RcHm_v2.0_Chr7g0204881' => 'rch', 'Rhsim01G0249900' => 'rsi', 'Rhsim06G0063300' => 'rsi', 'Sabra02G0091900' => 'sbr', 'Sabra02G0189000' => 'sbr', 'Sabra06G0022100' => 'sbr', 'Sabra14G0112600' => 'sbr', 'SalBow1G3833' => 'sbo', 'SalBow1G6080' => 'sbo', 'SalBow2G2341' => 'sbo', 'SalBow6G2280' => 'sbo', 'Sc17g0001910' => 'sci', 'Sc19g0007430' => 'sci', 'Sc26g0004220' => 'sci', 'Sed0005666' => 'sed', 'Sed0010939' => 'sed', 'Sed0025920' => 'sed', 'SEGI_25034' => 'sgi', 'SEGI_29388' => 'sgi', 'SGA_v2.0_scaffold152G36820' => 'sas', 'SGA_v2.0_scaffold156G37298' => 'sas', 'SGA_v2.0_scaffold19G08791' => 'sas', 'SGA_v2.0_scaffold240G44133' => 'sas', 'SMO171G0021' => 'smo', 'SMO203G0114' => 'smo', 'SMO234G0048' => 'smo', 'Solyc04g077660.3' => 'sly', 'Solyc06g083190.4' => 'sly', 'Solyc09g057660.3' => 'sly', 'Solyc09g092690.3' => 'sly', 'Solyc10g078250.1' => 'sly', 'Sopen04g031300' => 'spe', 'Sopen06g034580' => 'spe', 'Sopen09g021120' => 'spe', 'Sopen09g035620' => 'spe', 'Sopen10g028920' => 'spe', 'Sp2g18930' => 'spa', 'Sp3g22860' => 'spa', 'TAR362G0793' => 'tar', 'TAR636G2828' => 'tar', 'THA.LOC104808804' => 'tha', 'THA.LOC104818983' => 'tha', 'THA.LOC104821660' => 'tha', 'THA.LOC104822478' => 'tha', 'THA.LOC104823680' => 'tha', 'Thecc.01G215200' => 'tca', 'Thecc.04G190800' => 'tca', 'Thecc.08G086100' => 'tca', 'Thhalv10002468m.g' => 'esa', 'Thhalv10003906m.g' => 'esa', 'Thhalv10024088m.g' => 'esa', 'TPR.G11848' => 'tpr', 'TPR.G13111' => 'tpr', 'TPR.G16458' => 'tpr', 'TPR.G23183' => 'tpr', 'TPR.G29152' => 'tpr', 'TWI36G0946' => 'twi', 'TWI74G1305' => 'twi', 'TWI75G0156' => 'twi', 'unitig_0.g124' => 'ugi', 'unitig_0.g410' => 'ugi', 'unitig_746.g26596' => 'ugi', 'unitig_899.g15400' => 'ugi', 'vmacro14711' => 'vma', 'VMungo0251G3607' => 'vmu', 'VMungo0331G1976' => 'vmu', 'VMungo0647G2167' => 'vmu', 'VMungo1383G2838' => 'vmu', 'VMungo1383G3278' => 'vmu', 'Zm00001eb036130' => 'zma', 'Zm00001eb087350' => 'zma', 'Zm00001eb241230' => 'zma', 'Zm00001eb339750' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D001484' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D001484' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D001484' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001484' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D001484', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '399', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p44140' => 'bna', 'A06p39080' => 'bna', 'Aa31sc18G140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3862' => 'aag', 'Actinidia09454' => 'ach', 'Actinidia10211' => 'ach', 'Actinidia23376' => 'ach', 'Actinidia23776' => 'ach', 'Actinidia23777' => 'ach', 'Ah.04g150650' => 'amhyb', 'Ah.08g218900' => 'amhyb', 'Ah.11g039360' => 'amhyb', 'Ah.13g077790' => 'amhyb', 'AL2G17760' => 'aly', 'AL3G41150' => 'aly', 'AL8G19050' => 'aly', 'AL8G21550' => 'aly', 'Aqoxy4G00034' => 'aox', 'Aqoxy5G00042' => 'aox', 'Aqoxy6G02543' => 'aox', 'Aqoxy7G03853' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3F3WIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FW66N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X4Q28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90AC01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DU5DWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1KG5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNXF08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8MRPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3X144' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFY45J' => 'arhy', 'AT1G58450' => 'ath', 'AT3G25230' => 'ath', 'AT5G48570' => 'ath', 'ATR0739G132' => 'atr', 'ATR1147G036' => 'atr', 'Atru.chr1.1310' => 'acertr', 'Atru.chr13.854' => 'acertr', 'Atru.chr4.824' => 'acertr', 'Atru.chr6.1453' => 'acertr', 'AUR62001164' => 'cqu', 'AUR62002149' => 'cqu', 'AUR62018396' => 'cqu', 'AUR62022158' => 'cqu', 'AUR62030262' => 'cqu', 'BcaB08g34446' => 'bca', 'BcaB08g34451' => 'bca', 'BcaC01g03234' => 'bca', 'BcaC06g30780' => 'bca', 'BcaC06g30781' => 'bca', 'BolC3t17738H' => 'bol', 'BolC7t44446H' => 'bol', 'BraA03t13544Z' => 'bra', 'BraA06t26822Z' => 'bra', 'C03p54520' => 'bna', 'C07p39260' => 'bna', 'CAN.G1069.21' => 'can', 'CAN.G115.5' => 'can', 'CAN.G1444.1' => 'can', 'CAN.G1818.4' => 'can', 'CAN.G724.43' => 'can', 'CAN.G874.19' => 'can', 'CANSAT01G0614' => 'cansat', 'CANSAT78G1440' => 'cansat', 'CARHR101590' => 'chi', 'CARHR183440' => 'chi', 'Carub.0002s0606' => 'cru', 'Carub.0003s2563' => 'cru', 'Carub.0008s0820' => 'cru', 'Ca_07499_v3' => 'car', 'Ca_08706_v3' => 'car', 'Ca_18008_v3' => 'car', 'Ca_23206_v3' => 'car', 'CBR_g29656' => 'cbr', 'CBR_g29659' => 'cbr', 'Cc01_g16410' => 'ccan', 'Cc03_g09080' => 'ccan', 'Cc06_g20290' => 'ccan', 'Cc06_g20300' => 'ccan', 'Cc06_g20350' => 'ccan', 'Cc10_g05120' => 'ccan', 'CDE01G0210' => 'cde', 'CDE01G0720' => 'cde', 'CDE04G3404' => 'cde', 'Cfa008668' => 'cfa', 'Cfa013756' => 'cfa', 'Cfa021438' => 'cfa', 'Ciclev10003372m.g' => 'ccl', 'Ciclev10011447m.g' => 'ccl', 'Ciclev10013213m.g' => 'ccl', 'Ciclev10031088m.g' => 'ccl', 'CiPaw.01G113200' => 'cil', 'CiPaw.08G051000' => 'cil', 'CiPaw.09G051100' => 'cil', 'CiPaw.13G051700' => 'cil', 'ClCG05G007100' => 'cla', 'ClCG09G008490' => 'cla', 'COL.COLO4_28478' => 'col', 'COL.COLO4_33102' => 'col', 'COL.COLO4_35962' => 'col', 'Cpa.g.sc142.50' => 'cpa', 'Cpa.g.sc157.11' => 'cpa', 'Cpa.g.sc8.107' => 'cpa', 'Cre09.g398067' => 'cre', 'CsaV3_3G015840' => 'csa', 'CsaV3_7G026570' => 'csa', 'CSS0007797' => 'camsi', 'CSS0012168' => 'camsi', 'CSS0031366' => 'camsi', 'CSS0033787' => 'camsi', 'CSS0046057' => 'camsi', 'DCAR_004749' => 'dca', 'DCAR_009871' => 'dca', 'DCAR_020600' => 'dca', 'Dinv30283' => 'din', 'Dinv30670' => 'din', 'Dinv34330' => 'din', 'Dinv39212' => 'din', 'Duzib093G1896' => 'dzi', 'Duzib133G0343' => 'dzi', 'Duzib138G0528' => 'dzi', 'Duzib151G0019' => 'dzi', 'Duzib211G0643' => 'dzi', 'ECA236G1971' => 'eca', 'ECA236G2728' => 'eca', 'ECA247G3328' => 'eca', 'ECA248G1653' => 'eca', 'EL10Ac3g07286' => 'bvu', 'EL10Ac7g17958' => 'bvu', 'Eucgr.F02235' => 'egr', 'Eucgr.H02629' => 'egr', 'Eucgr.K01672' => 'egr', 'Eucgr.K02110' => 'egr', 'Eucgr.L02444' => 'egr', 'FAN07G0161' => 'fan', 'FAN12G3068' => 'fan', 'FAN15G0871' => 'fan', 'FAN15G3105' => 'fan', 'FAN17G0261' => 'fan', 'FAN22G0808' => 'fan', 'FAN24G0761' => 'fan', 'FAN24G2049' => 'fan', 'FAN27G2593' => 'fan', 'FAN27G3507' => 'fan', 'FvH4_2g18150' => 'fve', 'FvH4_2g32840' => 'fve', 'FvH4_4g12830' => 'fve', 'Glyma.03G086200' => 'gma', 'Glyma.03G122100' => 'gma', 'Glyma.05G149900' => 'gma', 'Glyma.07G161750' => 'gma', 'Glyma.08G106700' => 'gma', 'Glyma.08G346700' => 'gma', 'Glyma.14G089045' => 'gma', 'Glyma.16G088000' => 'gma', 'Glyma.17G233800' => 'gma', 'Glyma.18G158100' => 'gma', 'Glyma.19G126251' => 'gma', 'Gohir.A05G211100' => 'ghi', 'Gohir.A07G091400' => 'ghi', 'Gohir.A09G208100' => 'ghi', 'Gohir.A10G130600' => 'ghi', 'Gohir.A11G140700' => 'ghi', 'Gohir.D02G018350' => 'ghi', 'Gohir.D05G214400' => 'ghi', 'Gohir.D07G096100' => 'ghi', 'Gohir.D09G201600' => 'ghi', 'Gohir.D10G135800' => 'ghi', 'Gohir.D11G147200' => 'ghi', 'Gorai.001G103400' => 'gra', 'Gorai.005G022600' => 'gra', 'Gorai.006G225400' => 'gra', 'Gorai.007G157600' => 'gra', 'Gorai.009G221100' => 'gra', 'Gorai.011G150600' => 'gra', 'GSVIVG01002527001' => 'vvi', 'GSVIVG01002899001' => 'vvi', 'GSVIVG01009318001' => 'vvi', 'GSVIVG01025799001' => 'vvi', 'HanXRQChr04g0108381' => 'han', 'HanXRQChr08g0232301' => 'han', 'HanXRQChr11g0344551' => 'han', 'Haze_03331' => 'cav', 'Haze_11686' => 'cav', 'Haze_20274' => 'cav', 'Haze_22414' => 'cav', 'Hma1.2p1_0226F.1_g095160' => 'hma', 'Hma1.2p1_1170F.1_g263350' => 'hma', 'HPP92_003172' => 'vpl', 'HPP92_025244' => 'vpl', 'Hund05289' => 'sun', 'Hund05592' => 'sun', 'Hund18462' => 'sun', 'Hund19025' => 'sun', 'Lalb_Chr12g0205901' => 'lal', 'Lalb_Chr14g0365471' => 'lal', 'Lalb_Chr19g0125951' => 'lal', 'Lalb_Chr22g0355721' => 'lal', 'Lj1A92T27' => 'lonja', 'Lj1C1082G15' => 'lonja', 'Lj1C94T2' => 'lonja', 'Lj1g0019067' => 'lja', 'Lj1g0026054' => 'lja', 'Lj2A1121T86' => 'lonja', 'Lj3g0022519' => 'lja', 'Lj4A73G44' => 'lonja', 'Lj4g0024760' => 'lja', 'Lj5g0008051' => 'lja', 'Lsat_1_v5_gn_1_19881' => 'lsa', 'Lsat_1_v5_gn_1_69221' => 'lsa', 'Lsat_1_v5_gn_2_116080' => 'lsa', 'Lsat_1_v5_gn_8_89001' => 'lsa', 'Lsat_1_v5_gn_9_17400' => 'lsa', 'Lsat_1_v5_gn_9_4960' => 'lsa', 'Lsat_1_v5_gn_9_76560' => 'lsa', 'Manes.05G198600' => 'mes', 'Manes.08G063600' => 'mes', 'Manes.12G050700' => 'mes', 'Manes.13G051764' => 'mes', 'Manes.18G047900' => 'mes', 'Mapoly0001s0304' => 'mpo', 'MBI04_g22009_MAGBIO' => 'mbi', 'MBI07_g06206_MAGBIO' => 'mbi', 'MBI11_g07397_MAGBIO' => 'mbi', 'MBI16_g37638_MAGBIO' => 'mbi', 'MCO08G129' => 'mco', 'MD04G1022400' => 'mdo', 'MD05G1166200' => 'mdo', 'MD10G1156300' => 'mdo', 'MD15G1067100' => 'mdo', 'Medtr1g017870' => 'mtr', 'Medtr7g053470' => 'mtr', 'Medtr8g008640' => 'mtr', 'Medtr8g010620' => 'mtr', 'Medtr8g011100' => 'mtr', 'Medtr8g011140' => 'mtr', 'Medtr8g012340' => 'mtr', 'Medtr8g012360' => 'mtr', 'Medtr8g038785' => 'mtr', 'Medtr8g080980' => 'mtr', 'MELO3C006783.2' => 'cme', 'MELO3C021107.2' => 'cme', 'Migut.D02482' => 'egut', 'Migut.K00158' => 'egut', 'Migut.N00645' => 'egut', 'MSTRG.10780' => 'ama', 'MSTRG.18822' => 'ama', 'MSTRG.24384' => 'ama', 'Nitab4.5_0000123g0380' => 'nta', 'Nitab4.5_0000296g0040' => 'nta', 'Nitab4.5_0000497g0050' => 'nta', 'Nitab4.5_0002671g0110' => 'nta', 'Nitab4.5_0003725g0020' => 'nta', 'Nitab4.5_0006376g0040' => 'nta', 'Nitab4.5_0010531g0020' => 'nta', 'Nitab4.5_0011877g0010' => 'nta', 'Nn1g08125' => 'nnu', 'Nn5g30635' => 'nnu', 'Nn8g39174' => 'nnu', 'Oeu003626.1' => 'oeu', 'Oeu019878.2' => 'oeu', 'Oeu029942.1' => 'oeu', 'Oeu050729.1' => 'oeu', 'Oeu053076.2' => 'oeu', 'Oeu056450.4' => 'oeu', 'Oeu057851.2' => 'oeu', 'Oeu064757.3' => 'oeu', 'Os01g0562400' => 'osa', 'Os01g0563000' => 'osa', 'Os01g0564300' => 'osa', 'Os02g0491400' => 'osa', 'Os04g0352400' => 'osa', 'Os08g0525600' => 'osa', 'Peaxi162Scf00003g05237' => 'pax', 'Peaxi162Scf00003g05239' => 'pax', 'Peaxi162Scf00081g02735' => 'pax', 'Peaxi162Scf00286g00929' => 'pax', 'Peaxi162Scf00487g00114' => 'pax', 'Peaxi162Scf01133g00014' => 'pax', 'PGR044G1772' => 'pgr', 'PGR142G3207' => 'pgr', 'PGSC0003DMG400007177' => 'stu', 'PGSC0003DMG400010624' => 'stu', 'PGSC0003DMG400020107' => 'stu', 'PGSC0003DMG400020802' => 'stu', 'PGSC0003DMG400031522' => 'stu', 'Phvul.001G029000' => 'pvu', 'Phvul.001G118200' => 'pvu', 'Phvul.003G064500' => 'pvu', 'Phvul.003G177200' => 'pvu', 'Phvul.008G133100' => 'pvu', 'Phvul.010G024500' => 'pvu', 'Potri.002G117200' => 'ptr', 'Potri.002G248300' => 'ptr', 'Potri.006G033400' => 'ptr', 'Potri.014G149400' => 'ptr', 'Potri.016G031166' => 'ptr', 'Pp3c16_920' => 'ppa', 'Pp3c19_2600' => 'ppa', 'PRCOL_00001044' => 'pco', 'PRCOL_00002965' => 'pco', 'PRCOL_00005371' => 'pco', 'Prupe.1G172600' => 'ppe', 'Prupe.1G420900' => 'ppe', 'Prupe.8G194100' => 'ppe', 'Psat3g081840' => 'psa', 'Psat3g150280' => 'psa', 'Psat4g204920' => 'psa', 'Psat6g017640' => 'psa', 'Psat7g076200' => 'psa', 'PSO017G3056' => 'pso', 'PSO210G1399' => 'pso', 'PSO210G2674' => 'pso', 'PSO423G0151' => 'pso', 'PSO423G0180' => 'pso', 'PSO541G2479' => 'pso', 'PSO596G0028' => 'pso', 'PSO675G5816' => 'pso', 'PSO675G6938' => 'pso', 'QL06p027392' => 'qlo', 'QL07p013318' => 'qlo', 'QL09p049260' => 'qlo', 'QL12p038350' => 'qlo', 'RcHm_v2.0_Chr4g0412331' => 'rch', 'RcHm_v2.0_Chr6g0283541' => 'rch', 'RcHm_v2.0_Chr6g0309861' => 'rch', 'RcHm_v2.0_Chr7g0204881' => 'rch', 'Rhsim01G0249900' => 'rsi', 'Rhsim06G0063300' => 'rsi', 'Sabra02G0091900' => 'sbr', 'Sabra02G0189000' => 'sbr', 'Sabra06G0022100' => 'sbr', 'Sabra14G0112600' => 'sbr', 'SalBow1G3833' => 'sbo', 'SalBow1G6080' => 'sbo', 'SalBow2G2341' => 'sbo', 'SalBow6G2280' => 'sbo', 'Sc17g0001910' => 'sci', 'Sc19g0007430' => 'sci', 'Sc26g0004220' => 'sci', 'Sed0005666' => 'sed', 'Sed0010939' => 'sed', 'Sed0025920' => 'sed', 'SEGI_25034' => 'sgi', 'SEGI_29388' => 'sgi', 'SGA_v2.0_scaffold152G36820' => 'sas', 'SGA_v2.0_scaffold156G37298' => 'sas', 'SGA_v2.0_scaffold19G08791' => 'sas', 'SGA_v2.0_scaffold240G44133' => 'sas', 'SMO171G0021' => 'smo', 'SMO203G0114' => 'smo', 'SMO234G0048' => 'smo', 'Solyc04g077660.3' => 'sly', 'Solyc06g083190.4' => 'sly', 'Solyc09g057660.3' => 'sly', 'Solyc09g092690.3' => 'sly', 'Solyc10g078250.1' => 'sly', 'Sopen04g031300' => 'spe', 'Sopen06g034580' => 'spe', 'Sopen09g021120' => 'spe', 'Sopen09g035620' => 'spe', 'Sopen10g028920' => 'spe', 'Sp2g18930' => 'spa', 'Sp3g22860' => 'spa', 'TAR362G0793' => 'tar', 'TAR636G2828' => 'tar', 'THA.LOC104808804' => 'tha', 'THA.LOC104818983' => 'tha', 'THA.LOC104821660' => 'tha', 'THA.LOC104822478' => 'tha', 'THA.LOC104823680' => 'tha', 'Thecc.01G215200' => 'tca', 'Thecc.04G190800' => 'tca', 'Thecc.08G086100' => 'tca', 'Thhalv10002468m.g' => 'esa', 'Thhalv10003906m.g' => 'esa', 'Thhalv10024088m.g' => 'esa', 'TPR.G11848' => 'tpr', 'TPR.G13111' => 'tpr', 'TPR.G16458' => 'tpr', 'TPR.G23183' => 'tpr', 'TPR.G29152' => 'tpr', 'TWI36G0946' => 'twi', 'TWI74G1305' => 'twi', 'TWI75G0156' => 'twi', 'unitig_0.g124' => 'ugi', 'unitig_0.g410' => 'ugi', 'unitig_746.g26596' => 'ugi', 'unitig_899.g15400' => 'ugi', 'vmacro14711' => 'vma', 'VMungo0251G3607' => 'vmu', 'VMungo0331G1976' => 'vmu', 'VMungo0647G2167' => 'vmu', 'VMungo1383G2838' => 'vmu', 'VMungo1383G3278' => 'vmu', 'Zm00001eb036130' => 'zma', 'Zm00001eb087350' => 'zma', 'Zm00001eb241230' => 'zma', 'Zm00001eb339750' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D001484', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D001484' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D001484', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '399', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001484' ) ), 'genes' => array( 'A03p44140' => 'bna', 'A06p39080' => 'bna', 'Aa31sc18G140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3862' => 'aag', 'Actinidia09454' => 'ach', 'Actinidia10211' => 'ach', 'Actinidia23376' => 'ach', 'Actinidia23776' => 'ach', 'Actinidia23777' => 'ach', 'Ah.04g150650' => 'amhyb', 'Ah.08g218900' => 'amhyb', 'Ah.11g039360' => 'amhyb', 'Ah.13g077790' => 'amhyb', 'AL2G17760' => 'aly', 'AL3G41150' => 'aly', 'AL8G19050' => 'aly', 'AL8G21550' => 'aly', 'Aqoxy4G00034' => 'aox', 'Aqoxy5G00042' => 'aox', 'Aqoxy6G02543' => 'aox', 'Aqoxy7G03853' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3F3WIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FW66N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X4Q28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90AC01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DU5DWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1KG5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNXF08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8MRPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3X144' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFY45J' => 'arhy', 'AT1G58450' => 'ath', 'AT3G25230' => 'ath', 'AT5G48570' => 'ath', 'ATR0739G132' => 'atr', 'ATR1147G036' => 'atr', 'Atru.chr1.1310' => 'acertr', 'Atru.chr13.854' => 'acertr', 'Atru.chr4.824' => 'acertr', 'Atru.chr6.1453' => 'acertr', 'AUR62001164' => 'cqu', 'AUR62002149' => 'cqu', 'AUR62018396' => 'cqu', 'AUR62022158' => 'cqu', 'AUR62030262' => 'cqu', 'BcaB08g34446' => 'bca', 'BcaB08g34451' => 'bca', 'BcaC01g03234' => 'bca', 'BcaC06g30780' => 'bca', 'BcaC06g30781' => 'bca', 'BolC3t17738H' => 'bol', 'BolC7t44446H' => 'bol', 'BraA03t13544Z' => 'bra', 'BraA06t26822Z' => 'bra', 'C03p54520' => 'bna', 'C07p39260' => 'bna', 'CAN.G1069.21' => 'can', 'CAN.G115.5' => 'can', 'CAN.G1444.1' => 'can', 'CAN.G1818.4' => 'can', 'CAN.G724.43' => 'can', 'CAN.G874.19' => 'can', 'CANSAT01G0614' => 'cansat', 'CANSAT78G1440' => 'cansat', 'CARHR101590' => 'chi', 'CARHR183440' => 'chi', 'Carub.0002s0606' => 'cru', 'Carub.0003s2563' => 'cru', 'Carub.0008s0820' => 'cru', 'Ca_07499_v3' => 'car', 'Ca_08706_v3' => 'car', 'Ca_18008_v3' => 'car', 'Ca_23206_v3' => 'car', 'CBR_g29656' => 'cbr', 'CBR_g29659' => 'cbr', 'Cc01_g16410' => 'ccan', 'Cc03_g09080' => 'ccan', 'Cc06_g20290' => 'ccan', 'Cc06_g20300' => 'ccan', 'Cc06_g20350' => 'ccan', 'Cc10_g05120' => 'ccan', 'CDE01G0210' => 'cde', 'CDE01G0720' => 'cde', 'CDE04G3404' => 'cde', 'Cfa008668' => 'cfa', 'Cfa013756' => 'cfa', 'Cfa021438' => 'cfa', 'Ciclev10003372m.g' => 'ccl', 'Ciclev10011447m.g' => 'ccl', 'Ciclev10013213m.g' => 'ccl', 'Ciclev10031088m.g' => 'ccl', 'CiPaw.01G113200' => 'cil', 'CiPaw.08G051000' => 'cil', 'CiPaw.09G051100' => 'cil', 'CiPaw.13G051700' => 'cil', 'ClCG05G007100' => 'cla', 'ClCG09G008490' => 'cla', 'COL.COLO4_28478' => 'col', 'COL.COLO4_33102' => 'col', 'COL.COLO4_35962' => 'col', 'Cpa.g.sc142.50' => 'cpa', 'Cpa.g.sc157.11' => 'cpa', 'Cpa.g.sc8.107' => 'cpa', 'Cre09.g398067' => 'cre', 'CsaV3_3G015840' => 'csa', 'CsaV3_7G026570' => 'csa', 'CSS0007797' => 'camsi', 'CSS0012168' => 'camsi', 'CSS0031366' => 'camsi', 'CSS0033787' => 'camsi', 'CSS0046057' => 'camsi', 'DCAR_004749' => 'dca', 'DCAR_009871' => 'dca', 'DCAR_020600' => 'dca', 'Dinv30283' => 'din', 'Dinv30670' => 'din', 'Dinv34330' => 'din', 'Dinv39212' => 'din', 'Duzib093G1896' => 'dzi', 'Duzib133G0343' => 'dzi', 'Duzib138G0528' => 'dzi', 'Duzib151G0019' => 'dzi', 'Duzib211G0643' => 'dzi', 'ECA236G1971' => 'eca', 'ECA236G2728' => 'eca', 'ECA247G3328' => 'eca', 'ECA248G1653' => 'eca', 'EL10Ac3g07286' => 'bvu', 'EL10Ac7g17958' => 'bvu', 'Eucgr.F02235' => 'egr', 'Eucgr.H02629' => 'egr', 'Eucgr.K01672' => 'egr', 'Eucgr.K02110' => 'egr', 'Eucgr.L02444' => 'egr', 'FAN07G0161' => 'fan', 'FAN12G3068' => 'fan', 'FAN15G0871' => 'fan', 'FAN15G3105' => 'fan', 'FAN17G0261' => 'fan', 'FAN22G0808' => 'fan', 'FAN24G0761' => 'fan', 'FAN24G2049' => 'fan', 'FAN27G2593' => 'fan', 'FAN27G3507' => 'fan', 'FvH4_2g18150' => 'fve', 'FvH4_2g32840' => 'fve', 'FvH4_4g12830' => 'fve', 'Glyma.03G086200' => 'gma', 'Glyma.03G122100' => 'gma', 'Glyma.05G149900' => 'gma', 'Glyma.07G161750' => 'gma', 'Glyma.08G106700' => 'gma', 'Glyma.08G346700' => 'gma', 'Glyma.14G089045' => 'gma', 'Glyma.16G088000' => 'gma', 'Glyma.17G233800' => 'gma', 'Glyma.18G158100' => 'gma', 'Glyma.19G126251' => 'gma', 'Gohir.A05G211100' => 'ghi', 'Gohir.A07G091400' => 'ghi', 'Gohir.A09G208100' => 'ghi', 'Gohir.A10G130600' => 'ghi', 'Gohir.A11G140700' => 'ghi', 'Gohir.D02G018350' => 'ghi', 'Gohir.D05G214400' => 'ghi', 'Gohir.D07G096100' => 'ghi', 'Gohir.D09G201600' => 'ghi', 'Gohir.D10G135800' => 'ghi', 'Gohir.D11G147200' => 'ghi', 'Gorai.001G103400' => 'gra', 'Gorai.005G022600' => 'gra', 'Gorai.006G225400' => 'gra', 'Gorai.007G157600' => 'gra', 'Gorai.009G221100' => 'gra', 'Gorai.011G150600' => 'gra', 'GSVIVG01002527001' => 'vvi', 'GSVIVG01002899001' => 'vvi', 'GSVIVG01009318001' => 'vvi', 'GSVIVG01025799001' => 'vvi', 'HanXRQChr04g0108381' => 'han', 'HanXRQChr08g0232301' => 'han', 'HanXRQChr11g0344551' => 'han', 'Haze_03331' => 'cav', 'Haze_11686' => 'cav', 'Haze_20274' => 'cav', 'Haze_22414' => 'cav', 'Hma1.2p1_0226F.1_g095160' => 'hma', 'Hma1.2p1_1170F.1_g263350' => 'hma', 'HPP92_003172' => 'vpl', 'HPP92_025244' => 'vpl', 'Hund05289' => 'sun', 'Hund05592' => 'sun', 'Hund18462' => 'sun', 'Hund19025' => 'sun', 'Lalb_Chr12g0205901' => 'lal', 'Lalb_Chr14g0365471' => 'lal', 'Lalb_Chr19g0125951' => 'lal', 'Lalb_Chr22g0355721' => 'lal', 'Lj1A92T27' => 'lonja', 'Lj1C1082G15' => 'lonja', 'Lj1C94T2' => 'lonja', 'Lj1g0019067' => 'lja', 'Lj1g0026054' => 'lja', 'Lj2A1121T86' => 'lonja', 'Lj3g0022519' => 'lja', 'Lj4A73G44' => 'lonja', 'Lj4g0024760' => 'lja', 'Lj5g0008051' => 'lja', 'Lsat_1_v5_gn_1_19881' => 'lsa', 'Lsat_1_v5_gn_1_69221' => 'lsa', 'Lsat_1_v5_gn_2_116080' => 'lsa', 'Lsat_1_v5_gn_8_89001' => 'lsa', 'Lsat_1_v5_gn_9_17400' => 'lsa', 'Lsat_1_v5_gn_9_4960' => 'lsa', 'Lsat_1_v5_gn_9_76560' => 'lsa', 'Manes.05G198600' => 'mes', 'Manes.08G063600' => 'mes', 'Manes.12G050700' => 'mes', 'Manes.13G051764' => 'mes', 'Manes.18G047900' => 'mes', 'Mapoly0001s0304' => 'mpo', 'MBI04_g22009_MAGBIO' => 'mbi', 'MBI07_g06206_MAGBIO' => 'mbi', 'MBI11_g07397_MAGBIO' => 'mbi', 'MBI16_g37638_MAGBIO' => 'mbi', 'MCO08G129' => 'mco', 'MD04G1022400' => 'mdo', 'MD05G1166200' => 'mdo', 'MD10G1156300' => 'mdo', 'MD15G1067100' => 'mdo', 'Medtr1g017870' => 'mtr', 'Medtr7g053470' => 'mtr', 'Medtr8g008640' => 'mtr', 'Medtr8g010620' => 'mtr', 'Medtr8g011100' => 'mtr', 'Medtr8g011140' => 'mtr', 'Medtr8g012340' => 'mtr', 'Medtr8g012360' => 'mtr', 'Medtr8g038785' => 'mtr', 'Medtr8g080980' => 'mtr', 'MELO3C006783.2' => 'cme', 'MELO3C021107.2' => 'cme', 'Migut.D02482' => 'egut', 'Migut.K00158' => 'egut', 'Migut.N00645' => 'egut', 'MSTRG.10780' => 'ama', 'MSTRG.18822' => 'ama', 'MSTRG.24384' => 'ama', 'Nitab4.5_0000123g0380' => 'nta', 'Nitab4.5_0000296g0040' => 'nta', 'Nitab4.5_0000497g0050' => 'nta', 'Nitab4.5_0002671g0110' => 'nta', 'Nitab4.5_0003725g0020' => 'nta', 'Nitab4.5_0006376g0040' => 'nta', 'Nitab4.5_0010531g0020' => 'nta', 'Nitab4.5_0011877g0010' => 'nta', 'Nn1g08125' => 'nnu', 'Nn5g30635' => 'nnu', 'Nn8g39174' => 'nnu', 'Oeu003626.1' => 'oeu', 'Oeu019878.2' => 'oeu', 'Oeu029942.1' => 'oeu', 'Oeu050729.1' => 'oeu', 'Oeu053076.2' => 'oeu', 'Oeu056450.4' => 'oeu', 'Oeu057851.2' => 'oeu', 'Oeu064757.3' => 'oeu', 'Os01g0562400' => 'osa', 'Os01g0563000' => 'osa', 'Os01g0564300' => 'osa', 'Os02g0491400' => 'osa', 'Os04g0352400' => 'osa', 'Os08g0525600' => 'osa', 'Peaxi162Scf00003g05237' => 'pax', 'Peaxi162Scf00003g05239' => 'pax', 'Peaxi162Scf00081g02735' => 'pax', 'Peaxi162Scf00286g00929' => 'pax', 'Peaxi162Scf00487g00114' => 'pax', 'Peaxi162Scf01133g00014' => 'pax', 'PGR044G1772' => 'pgr', 'PGR142G3207' => 'pgr', 'PGSC0003DMG400007177' => 'stu', 'PGSC0003DMG400010624' => 'stu', 'PGSC0003DMG400020107' => 'stu', 'PGSC0003DMG400020802' => 'stu', 'PGSC0003DMG400031522' => 'stu', 'Phvul.001G029000' => 'pvu', 'Phvul.001G118200' => 'pvu', 'Phvul.003G064500' => 'pvu', 'Phvul.003G177200' => 'pvu', 'Phvul.008G133100' => 'pvu', 'Phvul.010G024500' => 'pvu', 'Potri.002G117200' => 'ptr', 'Potri.002G248300' => 'ptr', 'Potri.006G033400' => 'ptr', 'Potri.014G149400' => 'ptr', 'Potri.016G031166' => 'ptr', 'Pp3c16_920' => 'ppa', 'Pp3c19_2600' => 'ppa', 'PRCOL_00001044' => 'pco', 'PRCOL_00002965' => 'pco', 'PRCOL_00005371' => 'pco', 'Prupe.1G172600' => 'ppe', 'Prupe.1G420900' => 'ppe', 'Prupe.8G194100' => 'ppe', 'Psat3g081840' => 'psa', 'Psat3g150280' => 'psa', 'Psat4g204920' => 'psa', 'Psat6g017640' => 'psa', 'Psat7g076200' => 'psa', 'PSO017G3056' => 'pso', 'PSO210G1399' => 'pso', 'PSO210G2674' => 'pso', 'PSO423G0151' => 'pso', 'PSO423G0180' => 'pso', 'PSO541G2479' => 'pso', 'PSO596G0028' => 'pso', 'PSO675G5816' => 'pso', 'PSO675G6938' => 'pso', 'QL06p027392' => 'qlo', 'QL07p013318' => 'qlo', 'QL09p049260' => 'qlo', 'QL12p038350' => 'qlo', 'RcHm_v2.0_Chr4g0412331' => 'rch', 'RcHm_v2.0_Chr6g0283541' => 'rch', 'RcHm_v2.0_Chr6g0309861' => 'rch', 'RcHm_v2.0_Chr7g0204881' => 'rch', 'Rhsim01G0249900' => 'rsi', 'Rhsim06G0063300' => 'rsi', 'Sabra02G0091900' => 'sbr', 'Sabra02G0189000' => 'sbr', 'Sabra06G0022100' => 'sbr', 'Sabra14G0112600' => 'sbr', 'SalBow1G3833' => 'sbo', 'SalBow1G6080' => 'sbo', 'SalBow2G2341' => 'sbo', 'SalBow6G2280' => 'sbo', 'Sc17g0001910' => 'sci', 'Sc19g0007430' => 'sci', 'Sc26g0004220' => 'sci', 'Sed0005666' => 'sed', 'Sed0010939' => 'sed', 'Sed0025920' => 'sed', 'SEGI_25034' => 'sgi', 'SEGI_29388' => 'sgi', 'SGA_v2.0_scaffold152G36820' => 'sas', 'SGA_v2.0_scaffold156G37298' => 'sas', 'SGA_v2.0_scaffold19G08791' => 'sas', 'SGA_v2.0_scaffold240G44133' => 'sas', 'SMO171G0021' => 'smo', 'SMO203G0114' => 'smo', 'SMO234G0048' => 'smo', 'Solyc04g077660.3' => 'sly', 'Solyc06g083190.4' => 'sly', 'Solyc09g057660.3' => 'sly', 'Solyc09g092690.3' => 'sly', 'Solyc10g078250.1' => 'sly', 'Sopen04g031300' => 'spe', 'Sopen06g034580' => 'spe', 'Sopen09g021120' => 'spe', 'Sopen09g035620' => 'spe', 'Sopen10g028920' => 'spe', 'Sp2g18930' => 'spa', 'Sp3g22860' => 'spa', 'TAR362G0793' => 'tar', 'TAR636G2828' => 'tar', 'THA.LOC104808804' => 'tha', 'THA.LOC104818983' => 'tha', 'THA.LOC104821660' => 'tha', 'THA.LOC104822478' => 'tha', 'THA.LOC104823680' => 'tha', 'Thecc.01G215200' => 'tca', 'Thecc.04G190800' => 'tca', 'Thecc.08G086100' => 'tca', 'Thhalv10002468m.g' => 'esa', 'Thhalv10003906m.g' => 'esa', 'Thhalv10024088m.g' => 'esa', 'TPR.G11848' => 'tpr', 'TPR.G13111' => 'tpr', 'TPR.G16458' => 'tpr', 'TPR.G23183' => 'tpr', 'TPR.G29152' => 'tpr', 'TWI36G0946' => 'twi', 'TWI74G1305' => 'twi', 'TWI75G0156' => 'twi', 'unitig_0.g124' => 'ugi', 'unitig_0.g410' => 'ugi', 'unitig_746.g26596' => 'ugi', 'unitig_899.g15400' => 'ugi', 'vmacro14711' => 'vma', 'VMungo0251G3607' => 'vmu', 'VMungo0331G1976' => 'vmu', 'VMungo0647G2167' => 'vmu', 'VMungo1383G2838' => 'vmu', 'VMungo1383G3278' => 'vmu', 'Zm00001eb036130' => 'zma', 'Zm00001eb087350' => 'zma', 'Zm00001eb241230' => 'zma', 'Zm00001eb339750' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D001484' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D001484' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D001484' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001484' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D001484', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '399', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p44140' => 'bna', 'A06p39080' => 'bna', 'Aa31sc18G140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3862' => 'aag', 'Actinidia09454' => 'ach', 'Actinidia10211' => 'ach', 'Actinidia23376' => 'ach', 'Actinidia23776' => 'ach', 'Actinidia23777' => 'ach', 'Ah.04g150650' => 'amhyb', 'Ah.08g218900' => 'amhyb', 'Ah.11g039360' => 'amhyb', 'Ah.13g077790' => 'amhyb', 'AL2G17760' => 'aly', 'AL3G41150' => 'aly', 'AL8G19050' => 'aly', 'AL8G21550' => 'aly', 'Aqoxy4G00034' => 'aox', 'Aqoxy5G00042' => 'aox', 'Aqoxy6G02543' => 'aox', 'Aqoxy7G03853' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3F3WIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FW66N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X4Q28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90AC01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DU5DWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1KG5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNXF08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8MRPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3X144' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFY45J' => 'arhy', 'AT1G58450' => 'ath', 'AT3G25230' => 'ath', 'AT5G48570' => 'ath', 'ATR0739G132' => 'atr', 'ATR1147G036' => 'atr', 'Atru.chr1.1310' => 'acertr', 'Atru.chr13.854' => 'acertr', 'Atru.chr4.824' => 'acertr', 'Atru.chr6.1453' => 'acertr', 'AUR62001164' => 'cqu', 'AUR62002149' => 'cqu', 'AUR62018396' => 'cqu', 'AUR62022158' => 'cqu', 'AUR62030262' => 'cqu', 'BcaB08g34446' => 'bca', 'BcaB08g34451' => 'bca', 'BcaC01g03234' => 'bca', 'BcaC06g30780' => 'bca', 'BcaC06g30781' => 'bca', 'BolC3t17738H' => 'bol', 'BolC7t44446H' => 'bol', 'BraA03t13544Z' => 'bra', 'BraA06t26822Z' => 'bra', 'C03p54520' => 'bna', 'C07p39260' => 'bna', 'CAN.G1069.21' => 'can', 'CAN.G115.5' => 'can', 'CAN.G1444.1' => 'can', 'CAN.G1818.4' => 'can', 'CAN.G724.43' => 'can', 'CAN.G874.19' => 'can', 'CANSAT01G0614' => 'cansat', 'CANSAT78G1440' => 'cansat', 'CARHR101590' => 'chi', 'CARHR183440' => 'chi', 'Carub.0002s0606' => 'cru', 'Carub.0003s2563' => 'cru', 'Carub.0008s0820' => 'cru', 'Ca_07499_v3' => 'car', 'Ca_08706_v3' => 'car', 'Ca_18008_v3' => 'car', 'Ca_23206_v3' => 'car', 'CBR_g29656' => 'cbr', 'CBR_g29659' => 'cbr', 'Cc01_g16410' => 'ccan', 'Cc03_g09080' => 'ccan', 'Cc06_g20290' => 'ccan', 'Cc06_g20300' => 'ccan', 'Cc06_g20350' => 'ccan', 'Cc10_g05120' => 'ccan', 'CDE01G0210' => 'cde', 'CDE01G0720' => 'cde', 'CDE04G3404' => 'cde', 'Cfa008668' => 'cfa', 'Cfa013756' => 'cfa', 'Cfa021438' => 'cfa', 'Ciclev10003372m.g' => 'ccl', 'Ciclev10011447m.g' => 'ccl', 'Ciclev10013213m.g' => 'ccl', 'Ciclev10031088m.g' => 'ccl', 'CiPaw.01G113200' => 'cil', 'CiPaw.08G051000' => 'cil', 'CiPaw.09G051100' => 'cil', 'CiPaw.13G051700' => 'cil', 'ClCG05G007100' => 'cla', 'ClCG09G008490' => 'cla', 'COL.COLO4_28478' => 'col', 'COL.COLO4_33102' => 'col', 'COL.COLO4_35962' => 'col', 'Cpa.g.sc142.50' => 'cpa', 'Cpa.g.sc157.11' => 'cpa', 'Cpa.g.sc8.107' => 'cpa', 'Cre09.g398067' => 'cre', 'CsaV3_3G015840' => 'csa', 'CsaV3_7G026570' => 'csa', 'CSS0007797' => 'camsi', 'CSS0012168' => 'camsi', 'CSS0031366' => 'camsi', 'CSS0033787' => 'camsi', 'CSS0046057' => 'camsi', 'DCAR_004749' => 'dca', 'DCAR_009871' => 'dca', 'DCAR_020600' => 'dca', 'Dinv30283' => 'din', 'Dinv30670' => 'din', 'Dinv34330' => 'din', 'Dinv39212' => 'din', 'Duzib093G1896' => 'dzi', 'Duzib133G0343' => 'dzi', 'Duzib138G0528' => 'dzi', 'Duzib151G0019' => 'dzi', 'Duzib211G0643' => 'dzi', 'ECA236G1971' => 'eca', 'ECA236G2728' => 'eca', 'ECA247G3328' => 'eca', 'ECA248G1653' => 'eca', 'EL10Ac3g07286' => 'bvu', 'EL10Ac7g17958' => 'bvu', 'Eucgr.F02235' => 'egr', 'Eucgr.H02629' => 'egr', 'Eucgr.K01672' => 'egr', 'Eucgr.K02110' => 'egr', 'Eucgr.L02444' => 'egr', 'FAN07G0161' => 'fan', 'FAN12G3068' => 'fan', 'FAN15G0871' => 'fan', 'FAN15G3105' => 'fan', 'FAN17G0261' => 'fan', 'FAN22G0808' => 'fan', 'FAN24G0761' => 'fan', 'FAN24G2049' => 'fan', 'FAN27G2593' => 'fan', 'FAN27G3507' => 'fan', 'FvH4_2g18150' => 'fve', 'FvH4_2g32840' => 'fve', 'FvH4_4g12830' => 'fve', 'Glyma.03G086200' => 'gma', 'Glyma.03G122100' => 'gma', 'Glyma.05G149900' => 'gma', 'Glyma.07G161750' => 'gma', 'Glyma.08G106700' => 'gma', 'Glyma.08G346700' => 'gma', 'Glyma.14G089045' => 'gma', 'Glyma.16G088000' => 'gma', 'Glyma.17G233800' => 'gma', 'Glyma.18G158100' => 'gma', 'Glyma.19G126251' => 'gma', 'Gohir.A05G211100' => 'ghi', 'Gohir.A07G091400' => 'ghi', 'Gohir.A09G208100' => 'ghi', 'Gohir.A10G130600' => 'ghi', 'Gohir.A11G140700' => 'ghi', 'Gohir.D02G018350' => 'ghi', 'Gohir.D05G214400' => 'ghi', 'Gohir.D07G096100' => 'ghi', 'Gohir.D09G201600' => 'ghi', 'Gohir.D10G135800' => 'ghi', 'Gohir.D11G147200' => 'ghi', 'Gorai.001G103400' => 'gra', 'Gorai.005G022600' => 'gra', 'Gorai.006G225400' => 'gra', 'Gorai.007G157600' => 'gra', 'Gorai.009G221100' => 'gra', 'Gorai.011G150600' => 'gra', 'GSVIVG01002527001' => 'vvi', 'GSVIVG01002899001' => 'vvi', 'GSVIVG01009318001' => 'vvi', 'GSVIVG01025799001' => 'vvi', 'HanXRQChr04g0108381' => 'han', 'HanXRQChr08g0232301' => 'han', 'HanXRQChr11g0344551' => 'han', 'Haze_03331' => 'cav', 'Haze_11686' => 'cav', 'Haze_20274' => 'cav', 'Haze_22414' => 'cav', 'Hma1.2p1_0226F.1_g095160' => 'hma', 'Hma1.2p1_1170F.1_g263350' => 'hma', 'HPP92_003172' => 'vpl', 'HPP92_025244' => 'vpl', 'Hund05289' => 'sun', 'Hund05592' => 'sun', 'Hund18462' => 'sun', 'Hund19025' => 'sun', 'Lalb_Chr12g0205901' => 'lal', 'Lalb_Chr14g0365471' => 'lal', 'Lalb_Chr19g0125951' => 'lal', 'Lalb_Chr22g0355721' => 'lal', 'Lj1A92T27' => 'lonja', 'Lj1C1082G15' => 'lonja', 'Lj1C94T2' => 'lonja', 'Lj1g0019067' => 'lja', 'Lj1g0026054' => 'lja', 'Lj2A1121T86' => 'lonja', 'Lj3g0022519' => 'lja', 'Lj4A73G44' => 'lonja', 'Lj4g0024760' => 'lja', 'Lj5g0008051' => 'lja', 'Lsat_1_v5_gn_1_19881' => 'lsa', 'Lsat_1_v5_gn_1_69221' => 'lsa', 'Lsat_1_v5_gn_2_116080' => 'lsa', 'Lsat_1_v5_gn_8_89001' => 'lsa', 'Lsat_1_v5_gn_9_17400' => 'lsa', 'Lsat_1_v5_gn_9_4960' => 'lsa', 'Lsat_1_v5_gn_9_76560' => 'lsa', 'Manes.05G198600' => 'mes', 'Manes.08G063600' => 'mes', 'Manes.12G050700' => 'mes', 'Manes.13G051764' => 'mes', 'Manes.18G047900' => 'mes', 'Mapoly0001s0304' => 'mpo', 'MBI04_g22009_MAGBIO' => 'mbi', 'MBI07_g06206_MAGBIO' => 'mbi', 'MBI11_g07397_MAGBIO' => 'mbi', 'MBI16_g37638_MAGBIO' => 'mbi', 'MCO08G129' => 'mco', 'MD04G1022400' => 'mdo', 'MD05G1166200' => 'mdo', 'MD10G1156300' => 'mdo', 'MD15G1067100' => 'mdo', 'Medtr1g017870' => 'mtr', 'Medtr7g053470' => 'mtr', 'Medtr8g008640' => 'mtr', 'Medtr8g010620' => 'mtr', 'Medtr8g011100' => 'mtr', 'Medtr8g011140' => 'mtr', 'Medtr8g012340' => 'mtr', 'Medtr8g012360' => 'mtr', 'Medtr8g038785' => 'mtr', 'Medtr8g080980' => 'mtr', 'MELO3C006783.2' => 'cme', 'MELO3C021107.2' => 'cme', 'Migut.D02482' => 'egut', 'Migut.K00158' => 'egut', 'Migut.N00645' => 'egut', 'MSTRG.10780' => 'ama', 'MSTRG.18822' => 'ama', 'MSTRG.24384' => 'ama', 'Nitab4.5_0000123g0380' => 'nta', 'Nitab4.5_0000296g0040' => 'nta', 'Nitab4.5_0000497g0050' => 'nta', 'Nitab4.5_0002671g0110' => 'nta', 'Nitab4.5_0003725g0020' => 'nta', 'Nitab4.5_0006376g0040' => 'nta', 'Nitab4.5_0010531g0020' => 'nta', 'Nitab4.5_0011877g0010' => 'nta', 'Nn1g08125' => 'nnu', 'Nn5g30635' => 'nnu', 'Nn8g39174' => 'nnu', 'Oeu003626.1' => 'oeu', 'Oeu019878.2' => 'oeu', 'Oeu029942.1' => 'oeu', 'Oeu050729.1' => 'oeu', 'Oeu053076.2' => 'oeu', 'Oeu056450.4' => 'oeu', 'Oeu057851.2' => 'oeu', 'Oeu064757.3' => 'oeu', 'Os01g0562400' => 'osa', 'Os01g0563000' => 'osa', 'Os01g0564300' => 'osa', 'Os02g0491400' => 'osa', 'Os04g0352400' => 'osa', 'Os08g0525600' => 'osa', 'Peaxi162Scf00003g05237' => 'pax', 'Peaxi162Scf00003g05239' => 'pax', 'Peaxi162Scf00081g02735' => 'pax', 'Peaxi162Scf00286g00929' => 'pax', 'Peaxi162Scf00487g00114' => 'pax', 'Peaxi162Scf01133g00014' => 'pax', 'PGR044G1772' => 'pgr', 'PGR142G3207' => 'pgr', 'PGSC0003DMG400007177' => 'stu', 'PGSC0003DMG400010624' => 'stu', 'PGSC0003DMG400020107' => 'stu', 'PGSC0003DMG400020802' => 'stu', 'PGSC0003DMG400031522' => 'stu', 'Phvul.001G029000' => 'pvu', 'Phvul.001G118200' => 'pvu', 'Phvul.003G064500' => 'pvu', 'Phvul.003G177200' => 'pvu', 'Phvul.008G133100' => 'pvu', 'Phvul.010G024500' => 'pvu', 'Potri.002G117200' => 'ptr', 'Potri.002G248300' => 'ptr', 'Potri.006G033400' => 'ptr', 'Potri.014G149400' => 'ptr', 'Potri.016G031166' => 'ptr', 'Pp3c16_920' => 'ppa', 'Pp3c19_2600' => 'ppa', 'PRCOL_00001044' => 'pco', 'PRCOL_00002965' => 'pco', 'PRCOL_00005371' => 'pco', 'Prupe.1G172600' => 'ppe', 'Prupe.1G420900' => 'ppe', 'Prupe.8G194100' => 'ppe', 'Psat3g081840' => 'psa', 'Psat3g150280' => 'psa', 'Psat4g204920' => 'psa', 'Psat6g017640' => 'psa', 'Psat7g076200' => 'psa', 'PSO017G3056' => 'pso', 'PSO210G1399' => 'pso', 'PSO210G2674' => 'pso', 'PSO423G0151' => 'pso', 'PSO423G0180' => 'pso', 'PSO541G2479' => 'pso', 'PSO596G0028' => 'pso', 'PSO675G5816' => 'pso', 'PSO675G6938' => 'pso', 'QL06p027392' => 'qlo', 'QL07p013318' => 'qlo', 'QL09p049260' => 'qlo', 'QL12p038350' => 'qlo', 'RcHm_v2.0_Chr4g0412331' => 'rch', 'RcHm_v2.0_Chr6g0283541' => 'rch', 'RcHm_v2.0_Chr6g0309861' => 'rch', 'RcHm_v2.0_Chr7g0204881' => 'rch', 'Rhsim01G0249900' => 'rsi', 'Rhsim06G0063300' => 'rsi', 'Sabra02G0091900' => 'sbr', 'Sabra02G0189000' => 'sbr', 'Sabra06G0022100' => 'sbr', 'Sabra14G0112600' => 'sbr', 'SalBow1G3833' => 'sbo', 'SalBow1G6080' => 'sbo', 'SalBow2G2341' => 'sbo', 'SalBow6G2280' => 'sbo', 'Sc17g0001910' => 'sci', 'Sc19g0007430' => 'sci', 'Sc26g0004220' => 'sci', 'Sed0005666' => 'sed', 'Sed0010939' => 'sed', 'Sed0025920' => 'sed', 'SEGI_25034' => 'sgi', 'SEGI_29388' => 'sgi', 'SGA_v2.0_scaffold152G36820' => 'sas', 'SGA_v2.0_scaffold156G37298' => 'sas', 'SGA_v2.0_scaffold19G08791' => 'sas', 'SGA_v2.0_scaffold240G44133' => 'sas', 'SMO171G0021' => 'smo', 'SMO203G0114' => 'smo', 'SMO234G0048' => 'smo', 'Solyc04g077660.3' => 'sly', 'Solyc06g083190.4' => 'sly', 'Solyc09g057660.3' => 'sly', 'Solyc09g092690.3' => 'sly', 'Solyc10g078250.1' => 'sly', 'Sopen04g031300' => 'spe', 'Sopen06g034580' => 'spe', 'Sopen09g021120' => 'spe', 'Sopen09g035620' => 'spe', 'Sopen10g028920' => 'spe', 'Sp2g18930' => 'spa', 'Sp3g22860' => 'spa', 'TAR362G0793' => 'tar', 'TAR636G2828' => 'tar', 'THA.LOC104808804' => 'tha', 'THA.LOC104818983' => 'tha', 'THA.LOC104821660' => 'tha', 'THA.LOC104822478' => 'tha', 'THA.LOC104823680' => 'tha', 'Thecc.01G215200' => 'tca', 'Thecc.04G190800' => 'tca', 'Thecc.08G086100' => 'tca', 'Thhalv10002468m.g' => 'esa', 'Thhalv10003906m.g' => 'esa', 'Thhalv10024088m.g' => 'esa', 'TPR.G11848' => 'tpr', 'TPR.G13111' => 'tpr', 'TPR.G16458' => 'tpr', 'TPR.G23183' => 'tpr', 'TPR.G29152' => 'tpr', 'TWI36G0946' => 'twi', 'TWI74G1305' => 'twi', 'TWI75G0156' => 'twi', 'unitig_0.g124' => 'ugi', 'unitig_0.g410' => 'ugi', 'unitig_746.g26596' => 'ugi', 'unitig_899.g15400' => 'ugi', 'vmacro14711' => 'vma', 'VMungo0251G3607' => 'vmu', 'VMungo0331G1976' => 'vmu', 'VMungo0647G2167' => 'vmu', 'VMungo1383G2838' => 'vmu', 'VMungo1383G3278' => 'vmu', 'Zm00001eb036130' => 'zma', 'Zm00001eb087350' => 'zma', 'Zm00001eb241230' => 'zma', 'Zm00001eb339750' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'ORTHO05D001484', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D001484' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'ORTHO05D001484', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '399', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false, 'has_blast_db' => true ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001484' ) ), 'genes' => array( 'A03p44140' => 'bna', 'A06p39080' => 'bna', 'Aa31sc18G140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.3862' => 'aag', 'Actinidia09454' => 'ach', 'Actinidia10211' => 'ach', 'Actinidia23376' => 'ach', 'Actinidia23776' => 'ach', 'Actinidia23777' => 'ach', 'Ah.04g150650' => 'amhyb', 'Ah.08g218900' => 'amhyb', 'Ah.11g039360' => 'amhyb', 'Ah.13g077790' => 'amhyb', 'AL2G17760' => 'aly', 'AL3G41150' => 'aly', 'AL8G19050' => 'aly', 'AL8G21550' => 'aly', 'Aqoxy4G00034' => 'aox', 'Aqoxy5G00042' => 'aox', 'Aqoxy6G02543' => 'aox', 'Aqoxy7G03853' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3F3WIY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3FW66N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8X4Q28' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.90AC01' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DU5DWV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1KG5K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNXF08' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P8MRPL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S3X144' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TFY45J' => 'arhy', 'AT1G58450' => 'ath', 'AT3G25230' => 'ath', 'AT5G48570' => 'ath', 'ATR0739G132' => 'atr', 'ATR1147G036' => 'atr', 'Atru.chr1.1310' => 'acertr', 'Atru.chr13.854' => 'acertr', 'Atru.chr4.824' => 'acertr', 'Atru.chr6.1453' => 'acertr', 'AUR62001164' => 'cqu', 'AUR62002149' => 'cqu', 'AUR62018396' => 'cqu', 'AUR62022158' => 'cqu', 'AUR62030262' => 'cqu', 'BcaB08g34446' => 'bca', 'BcaB08g34451' => 'bca', 'BcaC01g03234' => 'bca', 'BcaC06g30780' => 'bca', 'BcaC06g30781' => 'bca', 'BolC3t17738H' => 'bol', 'BolC7t44446H' => 'bol', 'BraA03t13544Z' => 'bra', 'BraA06t26822Z' => 'bra', 'C03p54520' => 'bna', 'C07p39260' => 'bna', 'CAN.G1069.21' => 'can', 'CAN.G115.5' => 'can', 'CAN.G1444.1' => 'can', 'CAN.G1818.4' => 'can', 'CAN.G724.43' => 'can', 'CAN.G874.19' => 'can', 'CANSAT01G0614' => 'cansat', 'CANSAT78G1440' => 'cansat', 'CARHR101590' => 'chi', 'CARHR183440' => 'chi', 'Carub.0002s0606' => 'cru', 'Carub.0003s2563' => 'cru', 'Carub.0008s0820' => 'cru', 'Ca_07499_v3' => 'car', 'Ca_08706_v3' => 'car', 'Ca_18008_v3' => 'car', 'Ca_23206_v3' => 'car', 'CBR_g29656' => 'cbr', 'CBR_g29659' => 'cbr', 'Cc01_g16410' => 'ccan', 'Cc03_g09080' => 'ccan', 'Cc06_g20290' => 'ccan', 'Cc06_g20300' => 'ccan', 'Cc06_g20350' => 'ccan', 'Cc10_g05120' => 'ccan', 'CDE01G0210' => 'cde', 'CDE01G0720' => 'cde', 'CDE04G3404' => 'cde', 'Cfa008668' => 'cfa', 'Cfa013756' => 'cfa', 'Cfa021438' => 'cfa', 'Ciclev10003372m.g' => 'ccl', 'Ciclev10011447m.g' => 'ccl', 'Ciclev10013213m.g' => 'ccl', 'Ciclev10031088m.g' => 'ccl', 'CiPaw.01G113200' => 'cil', 'CiPaw.08G051000' => 'cil', 'CiPaw.09G051100' => 'cil', 'CiPaw.13G051700' => 'cil', 'ClCG05G007100' => 'cla', 'ClCG09G008490' => 'cla', 'COL.COLO4_28478' => 'col', 'COL.COLO4_33102' => 'col', 'COL.COLO4_35962' => 'col', 'Cpa.g.sc142.50' => 'cpa', 'Cpa.g.sc157.11' => 'cpa', 'Cpa.g.sc8.107' => 'cpa', 'Cre09.g398067' => 'cre', 'CsaV3_3G015840' => 'csa', 'CsaV3_7G026570' => 'csa', 'CSS0007797' => 'camsi', 'CSS0012168' => 'camsi', 'CSS0031366' => 'camsi', 'CSS0033787' => 'camsi', 'CSS0046057' => 'camsi', 'DCAR_004749' => 'dca', 'DCAR_009871' => 'dca', 'DCAR_020600' => 'dca', 'Dinv30283' => 'din', 'Dinv30670' => 'din', 'Dinv34330' => 'din', 'Dinv39212' => 'din', 'Duzib093G1896' => 'dzi', 'Duzib133G0343' => 'dzi', 'Duzib138G0528' => 'dzi', 'Duzib151G0019' => 'dzi', 'Duzib211G0643' => 'dzi', 'ECA236G1971' => 'eca', 'ECA236G2728' => 'eca', 'ECA247G3328' => 'eca', 'ECA248G1653' => 'eca', 'EL10Ac3g07286' => 'bvu', 'EL10Ac7g17958' => 'bvu', 'Eucgr.F02235' => 'egr', 'Eucgr.H02629' => 'egr', 'Eucgr.K01672' => 'egr', 'Eucgr.K02110' => 'egr', 'Eucgr.L02444' => 'egr', 'FAN07G0161' => 'fan', 'FAN12G3068' => 'fan', 'FAN15G0871' => 'fan', 'FAN15G3105' => 'fan', 'FAN17G0261' => 'fan', 'FAN22G0808' => 'fan', 'FAN24G0761' => 'fan', 'FAN24G2049' => 'fan', 'FAN27G2593' => 'fan', 'FAN27G3507' => 'fan', 'FvH4_2g18150' => 'fve', 'FvH4_2g32840' => 'fve', 'FvH4_4g12830' => 'fve', 'Glyma.03G086200' => 'gma', 'Glyma.03G122100' => 'gma', 'Glyma.05G149900' => 'gma', 'Glyma.07G161750' => 'gma', 'Glyma.08G106700' => 'gma', 'Glyma.08G346700' => 'gma', 'Glyma.14G089045' => 'gma', 'Glyma.16G088000' => 'gma', 'Glyma.17G233800' => 'gma', 'Glyma.18G158100' => 'gma', 'Glyma.19G126251' => 'gma', 'Gohir.A05G211100' => 'ghi', 'Gohir.A07G091400' => 'ghi', 'Gohir.A09G208100' => 'ghi', 'Gohir.A10G130600' => 'ghi', 'Gohir.A11G140700' => 'ghi', 'Gohir.D02G018350' => 'ghi', 'Gohir.D05G214400' => 'ghi', 'Gohir.D07G096100' => 'ghi', 'Gohir.D09G201600' => 'ghi', 'Gohir.D10G135800' => 'ghi', 'Gohir.D11G147200' => 'ghi', 'Gorai.001G103400' => 'gra', 'Gorai.005G022600' => 'gra', 'Gorai.006G225400' => 'gra', 'Gorai.007G157600' => 'gra', 'Gorai.009G221100' => 'gra', 'Gorai.011G150600' => 'gra', 'GSVIVG01002527001' => 'vvi', 'GSVIVG01002899001' => 'vvi', 'GSVIVG01009318001' => 'vvi', 'GSVIVG01025799001' => 'vvi', 'HanXRQChr04g0108381' => 'han', 'HanXRQChr08g0232301' => 'han', 'HanXRQChr11g0344551' => 'han', 'Haze_03331' => 'cav', 'Haze_11686' => 'cav', 'Haze_20274' => 'cav', 'Haze_22414' => 'cav', 'Hma1.2p1_0226F.1_g095160' => 'hma', 'Hma1.2p1_1170F.1_g263350' => 'hma', 'HPP92_003172' => 'vpl', 'HPP92_025244' => 'vpl', 'Hund05289' => 'sun', 'Hund05592' => 'sun', 'Hund18462' => 'sun', 'Hund19025' => 'sun', 'Lalb_Chr12g0205901' => 'lal', 'Lalb_Chr14g0365471' => 'lal', 'Lalb_Chr19g0125951' => 'lal', 'Lalb_Chr22g0355721' => 'lal', 'Lj1A92T27' => 'lonja', 'Lj1C1082G15' => 'lonja', 'Lj1C94T2' => 'lonja', 'Lj1g0019067' => 'lja', 'Lj1g0026054' => 'lja', 'Lj2A1121T86' => 'lonja', 'Lj3g0022519' => 'lja', 'Lj4A73G44' => 'lonja', 'Lj4g0024760' => 'lja', 'Lj5g0008051' => 'lja', 'Lsat_1_v5_gn_1_19881' => 'lsa', 'Lsat_1_v5_gn_1_69221' => 'lsa', 'Lsat_1_v5_gn_2_116080' => 'lsa', 'Lsat_1_v5_gn_8_89001' => 'lsa', 'Lsat_1_v5_gn_9_17400' => 'lsa', 'Lsat_1_v5_gn_9_4960' => 'lsa', 'Lsat_1_v5_gn_9_76560' => 'lsa', 'Manes.05G198600' => 'mes', 'Manes.08G063600' => 'mes', 'Manes.12G050700' => 'mes', 'Manes.13G051764' => 'mes', 'Manes.18G047900' => 'mes', 'Mapoly0001s0304' => 'mpo', 'MBI04_g22009_MAGBIO' => 'mbi', 'MBI07_g06206_MAGBIO' => 'mbi', 'MBI11_g07397_MAGBIO' => 'mbi', 'MBI16_g37638_MAGBIO' => 'mbi', 'MCO08G129' => 'mco', 'MD04G1022400' => 'mdo', 'MD05G1166200' => 'mdo', 'MD10G1156300' => 'mdo', 'MD15G1067100' => 'mdo', 'Medtr1g017870' => 'mtr', 'Medtr7g053470' => 'mtr', 'Medtr8g008640' => 'mtr', 'Medtr8g010620' => 'mtr', 'Medtr8g011100' => 'mtr', 'Medtr8g011140' => 'mtr', 'Medtr8g012340' => 'mtr', 'Medtr8g012360' => 'mtr', 'Medtr8g038785' => 'mtr', 'Medtr8g080980' => 'mtr', 'MELO3C006783.2' => 'cme', 'MELO3C021107.2' => 'cme', 'Migut.D02482' => 'egut', 'Migut.K00158' => 'egut', 'Migut.N00645' => 'egut', 'MSTRG.10780' => 'ama', 'MSTRG.18822' => 'ama', 'MSTRG.24384' => 'ama', 'Nitab4.5_0000123g0380' => 'nta', 'Nitab4.5_0000296g0040' => 'nta', 'Nitab4.5_0000497g0050' => 'nta', 'Nitab4.5_0002671g0110' => 'nta', 'Nitab4.5_0003725g0020' => 'nta', 'Nitab4.5_0006376g0040' => 'nta', 'Nitab4.5_0010531g0020' => 'nta', 'Nitab4.5_0011877g0010' => 'nta', 'Nn1g08125' => 'nnu', 'Nn5g30635' => 'nnu', 'Nn8g39174' => 'nnu', 'Oeu003626.1' => 'oeu', 'Oeu019878.2' => 'oeu', 'Oeu029942.1' => 'oeu', 'Oeu050729.1' => 'oeu', 'Oeu053076.2' => 'oeu', 'Oeu056450.4' => 'oeu', 'Oeu057851.2' => 'oeu', 'Oeu064757.3' => 'oeu', 'Os01g0562400' => 'osa', 'Os01g0563000' => 'osa', 'Os01g0564300' => 'osa', 'Os02g0491400' => 'osa', 'Os04g0352400' => 'osa', 'Os08g0525600' => 'osa', 'Peaxi162Scf00003g05237' => 'pax', 'Peaxi162Scf00003g05239' => 'pax', 'Peaxi162Scf00081g02735' => 'pax', 'Peaxi162Scf00286g00929' => 'pax', 'Peaxi162Scf00487g00114' => 'pax', 'Peaxi162Scf01133g00014' => 'pax', 'PGR044G1772' => 'pgr', 'PGR142G3207' => 'pgr', 'PGSC0003DMG400007177' => 'stu', 'PGSC0003DMG400010624' => 'stu', 'PGSC0003DMG400020107' => 'stu', 'PGSC0003DMG400020802' => 'stu', 'PGSC0003DMG400031522' => 'stu', 'Phvul.001G029000' => 'pvu', 'Phvul.001G118200' => 'pvu', 'Phvul.003G064500' => 'pvu', 'Phvul.003G177200' => 'pvu', 'Phvul.008G133100' => 'pvu', 'Phvul.010G024500' => 'pvu', 'Potri.002G117200' => 'ptr', 'Potri.002G248300' => 'ptr', 'Potri.006G033400' => 'ptr', 'Potri.014G149400' => 'ptr', 'Potri.016G031166' => 'ptr', 'Pp3c16_920' => 'ppa', 'Pp3c19_2600' => 'ppa', 'PRCOL_00001044' => 'pco', 'PRCOL_00002965' => 'pco', 'PRCOL_00005371' => 'pco', 'Prupe.1G172600' => 'ppe', 'Prupe.1G420900' => 'ppe', 'Prupe.8G194100' => 'ppe', 'Psat3g081840' => 'psa', 'Psat3g150280' => 'psa', 'Psat4g204920' => 'psa', 'Psat6g017640' => 'psa', 'Psat7g076200' => 'psa', 'PSO017G3056' => 'pso', 'PSO210G1399' => 'pso', 'PSO210G2674' => 'pso', 'PSO423G0151' => 'pso', 'PSO423G0180' => 'pso', 'PSO541G2479' => 'pso', 'PSO596G0028' => 'pso', 'PSO675G5816' => 'pso', 'PSO675G6938' => 'pso', 'QL06p027392' => 'qlo', 'QL07p013318' => 'qlo', 'QL09p049260' => 'qlo', 'QL12p038350' => 'qlo', 'RcHm_v2.0_Chr4g0412331' => 'rch', 'RcHm_v2.0_Chr6g0283541' => 'rch', 'RcHm_v2.0_Chr6g0309861' => 'rch', 'RcHm_v2.0_Chr7g0204881' => 'rch', 'Rhsim01G0249900' => 'rsi', 'Rhsim06G0063300' => 'rsi', 'Sabra02G0091900' => 'sbr', 'Sabra02G0189000' => 'sbr', 'Sabra06G0022100' => 'sbr', 'Sabra14G0112600' => 'sbr', 'SalBow1G3833' => 'sbo', 'SalBow1G6080' => 'sbo', 'SalBow2G2341' => 'sbo', 'SalBow6G2280' => 'sbo', 'Sc17g0001910' => 'sci', 'Sc19g0007430' => 'sci', 'Sc26g0004220' => 'sci', 'Sed0005666' => 'sed', 'Sed0010939' => 'sed', 'Sed0025920' => 'sed', 'SEGI_25034' => 'sgi', 'SEGI_29388' => 'sgi', 'SGA_v2.0_scaffold152G36820' => 'sas', 'SGA_v2.0_scaffold156G37298' => 'sas', 'SGA_v2.0_scaffold19G08791' => 'sas', 'SGA_v2.0_scaffold240G44133' => 'sas', 'SMO171G0021' => 'smo', 'SMO203G0114' => 'smo', 'SMO234G0048' => 'smo', 'Solyc04g077660.3' => 'sly', 'Solyc06g083190.4' => 'sly', 'Solyc09g057660.3' => 'sly', 'Solyc09g092690.3' => 'sly', 'Solyc10g078250.1' => 'sly', 'Sopen04g031300' => 'spe', 'Sopen06g034580' => 'spe', 'Sopen09g021120' => 'spe', 'Sopen09g035620' => 'spe', 'Sopen10g028920' => 'spe', 'Sp2g18930' => 'spa', 'Sp3g22860' => 'spa', 'TAR362G0793' => 'tar', 'TAR636G2828' => 'tar', 'THA.LOC104808804' => 'tha', 'THA.LOC104818983' => 'tha', 'THA.LOC104821660' => 'tha', 'THA.LOC104822478' => 'tha', 'THA.LOC104823680' => 'tha', 'Thecc.01G215200' => 'tca', 'Thecc.04G190800' => 'tca', 'Thecc.08G086100' => 'tca', 'Thhalv10002468m.g' => 'esa', 'Thhalv10003906m.g' => 'esa', 'Thhalv10024088m.g' => 'esa', 'TPR.G11848' => 'tpr', 'TPR.G13111' => 'tpr', 'TPR.G16458' => 'tpr', 'TPR.G23183' => 'tpr', 'TPR.G29152' => 'tpr', 'TWI36G0946' => 'twi', 'TWI74G1305' => 'twi', 'TWI75G0156' => 'twi', 'unitig_0.g124' => 'ugi', 'unitig_0.g410' => 'ugi', 'unitig_746.g26596' => 'ugi', 'unitig_899.g15400' => 'ugi', 'vmacro14711' => 'vma', 'VMungo0251G3607' => 'vmu', 'VMungo0331G1976' => 'vmu', 'VMungo0647G2167' => 'vmu', 'VMungo1383G2838' => 'vmu', 'VMungo1383G3278' => 'vmu', 'Zm00001eb036130' => 'zma', 'Zm00001eb087350' => 'zma', 'Zm00001eb241230' => 'zma', 'Zm00001eb339750' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'ORTHO05D001484' $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D001484' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'ORTHO05D001484' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'ORTHO05D001484' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151