Similarity Heatmap

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Code Context
                    <label>Source(s)</label>

                    <select class='form form-select' name='ontology_source_group' id='ontology_source_group'>

                        <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D003410',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '201',
		'num_species' => '89'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'gene_selection' => array(
		'parameters' => array(
			(int) 0 => array(
				[maximum depth reached]
			)
		),
		'genes' => array(
			'A06p47590' => 'bna',
			'A09p20730' => 'bna',
			'A10p02530' => 'bna',
			'Aa31LG1G20770' => 'aar',
			'Aa31LG5G3300' => 'aar',
			'AagrBONN_evm.TU.Sc2ySwM_362.1763' => 'aag',
			'Actinidia09517' => 'ach',
			'Actinidia39930' => 'ach',
			'Ah.10g030800' => 'amhyb',
			'AL1G13670' => 'aly',
			'AL8G16140' => 'aly',
			'Aqoxy2G00979' => 'aox',
			'AT1G04070' => 'ath',
			'AT5G43970' => 'ath',
			'Atru.chr4.1916' => 'acertr',
			'Atru.chr5.1834' => 'acertr',
			'AUR62015270' => 'cqu',
			'AUR62018067' => 'cqu',
			'AUR62037221' => 'cqu',
			'BcaB07g30549' => 'bca',
			'BcaB07g30984' => 'bca',
			'BcaC03g16619' => 'bca',
			'BcaC04g21879' => 'bca',
			'BcaC05g24474' => 'bca',
			'BcaC06g34608' => 'bca',
			'BcaC06g34614' => 'bca',
			'BcaC06g34615' => 'bca',
			'BolC2t10496H' => 'bol',
			'BolC5t29012H' => 'bol',
			'BolC7t43173H' => 'bol',
			'BolC7t43180H' => 'bol',
			'BolC9t55525H' => 'bol',
			'BraA06t27627Z' => 'bra',
			'BraA09t37677Z' => 'bra',
			'BraA10t42522Z' => 'bra',
			'C02p44520' => 'bna',
			'C07p26430' => 'bna',
			'C07p26530' => 'bna',
			'C09p26240' => 'bna',
			'CAN.G638.38' => 'can',
			'CAN.G941.30' => 'can',
			'CANSAT01G0813' => 'cansat',
			'CANSAT78G1185' => 'cansat',
			'CARHR003410' => 'chi',
			'CARHR179430' => 'chi',
			'Carub.0001s0322' => 'cru',
			'Carub.0008s0458' => 'cru',
			'Ca_09650_v3' => 'car',
			'Ca_11898_v3' => 'car',
			'Cc03_g06290' => 'ccan',
			'CDE01G0063' => 'cde',
			'CDE02G3003' => 'cde',
			'CDE08G0388' => 'cde',
			'Cfa002479' => 'cfa',
			'Cfa014780' => 'cfa',
			'Cfa021012' => 'cfa',
			'Ciclev10006291m.g' => 'ccl',
			'CiPaw.01G178000' => 'cil',
			'CiPaw.02G107100' => 'cil',
			'CiPaw.03G270300' => 'cil',
			'COL.COLO4_10574' => 'col',
			'COL.COLO4_15962' => 'col',
			'COL.COLO4_28885' => 'col',
			'Cpa.g.sc87.22' => 'cpa',
			'CsaV3_2G012420' => 'csa',
			'CsaV3_3G011700' => 'csa',
			'CSS0004045' => 'camsi',
			'CSS0024044' => 'camsi',
			'CSS0029259' => 'camsi',
			'DCAR_000567' => 'dca',
			'Dinv16396' => 'din',
			'Duzib133G1351' => 'dzi',
			'Duzib138G1667' => 'dzi',
			'Duzib151G0669' => 'dzi',
			'Duzib212G0034' => 'dzi',
			'ECA232G0562' => 'eca',
			'ECA238G3201' => 'eca',
			'EL10Ac3g06578' => 'bvu',
			'Eucgr.K01430' => 'egr',
			'FAN15G2918' => 'fan',
			'FAN23G3142' => 'fan',
			'FAN24G0274' => 'fan',
			'FAN27G2598' => 'fan',
			'FvH4_2g20580' => 'fve',
			'Glyma.10G040200' => 'gma',
			'Glyma.11G168500' => 'gma',
			'Glyma.11G177400' => 'gma',
			'Glyma.13G126900' => 'gma',
			'Gohir.A07G151800' => 'ghi',
			'Gohir.A07G204200' => 'ghi',
			'Gohir.A08G192000' => 'ghi',
			'Gohir.A10G107800' => 'ghi',
			'Gohir.D07G158100' => 'ghi',
			'Gohir.D07G210200' => 'ghi',
			'Gohir.D08G210000' => 'ghi',
			'Gohir.D10G158500' => 'ghi',
			'Gorai.001G181300' => 'gra',
			'Gorai.001G237600' => 'gra',
			'Gorai.004G222400' => 'gra',
			'Gorai.011G178100' => 'gra',
			'GSVIVG01027914001' => 'vvi',
			'GSVIVG01028415001' => 'vvi',
			'HanXRQChr05g0147801' => 'han',
			'HanXRQChr08g0223521' => 'han',
			'HanXRQChr11g0321361' => 'han',
			'Haze_24698' => 'cav',
			'HPP92_025323' => 'vpl',
			'Lalb_Chr03g0036961' => 'lal',
			'Lalb_Chr19g0128521' => 'lal',
			'Lalb_Chr21g0314111' => 'lal',
			'Lj5g0002672' => 'lja',
			'Lj6E621T0' => 'lonja',
			'Lj6g0010954' => 'lja',
			'Lsat_1_v5_gn_0_8120' => 'lsa',
			'Lsat_1_v5_gn_2_104281' => 'lsa',
			'Manes.03G159000' => 'mes',
			'Manes.12G036200' => 'mes',
			'Manes.15G045700' => 'mes',
			'Mapoly0045s0003' => 'mpo',
			'MBI10_g35429_MAGBIO' => 'mbi',
			'MCO09G328' => 'mco',
			'MD00G1060300' => 'mdo',
			'MD13G1221200' => 'mdo',
			'MD15G1267400' => 'mdo',
			'MD15G1267500' => 'mdo',
			'Medtr1g045505' => 'mtr',
			'Medtr1g069560' => 'mtr',
			'Medtr2g055920' => 'mtr',
			'MELO3C023044.2' => 'cme',
			'Migut.D00472' => 'egut',
			'Migut.N00301' => 'egut',
			'Nitab4.5_0000326g0310' => 'nta',
			'Nitab4.5_0000592g0420' => 'nta',
			'Nitab4.5_0002210g0040' => 'nta',
			'Nitab4.5_0009671g0040' => 'nta',
			'Nn1g02957' => 'nnu',
			'Nn3g19777' => 'nnu',
			'Oeu011221.1' => 'oeu',
			'Os02g0131600' => 'osa',
			'Os02g0496900' => 'osa',
			'Peaxi162Scf00319g00058' => 'pax',
			'Peaxi162Scf01157g00006' => 'pax',
			'PGR031G2487' => 'pgr',
			'PGSC0003DMG400013457' => 'stu',
			'Phvul.007G189500' => 'pvu',
			'Potri.002G257200' => 'ptr',
			'Potri.014G192601' => 'ptr',
			'Pp3c24_1490' => 'ppa',
			'Prupe.1G047800' => 'ppe',
			'Prupe.8G216100' => 'ppe',
			'Psat6g062760' => 'psa',
			'PSO013G0207' => 'pso',
			'PSO832G0849' => 'pso',
			'QL06p020998' => 'qlo',
			'QL12p002452' => 'qlo',
			'RcHm_v2.0_Chr4g0395371' => 'rch',
			'RcHm_v2.0_Chr6g0286751' => 'rch',
			'Rhsim02G0043700' => 'rsi',
			'Rhsim04G0172400' => 'rsi',
			'Sabra02G0195600' => 'sbr',
			'Sabra14G0143300' => 'sbr',
			'SalBow4G2851' => 'sbo',
			'SalBow6G3362' => 'sbo',
			'Sc13g0003120' => 'sci',
			'Sed0011790' => 'sed',
			'Sed0015699' => 'sed',
			'Sed0016490' => 'sed',
			'Sed0017794' => 'sed',
			'SEGI_13440' => 'sgi',
			'SHI01392' => 'shi',
			'SMO145G0028' => 'smo',
			'SMO358G0128' => 'smo',
			'Solyc03g005700.1' => 'sly',
			'Solyc06g008120.1' => 'sly',
			'Sopen03g001710' => 'spe',
			'Sopen06g002930' => 'spe',
			'Sp1g02890' => 'spa',
			'Sp2g08800' => 'spa',
			'TAR362G0673' => 'tar',
			'TAR365G0976' => 'tar',
			'TAR369G0184' => 'tar',
			'TAR633G0085' => 'tar',
			'TAR633G0988' => 'tar',
			'TAR633G1475' => 'tar',
			'TAR636G2865' => 'tar',
			'TAR688G0001' => 'tar',
			'THA.LOC104801123' => 'tha',
			'THA.LOC104815972' => 'tha',
			'Thecc.01G251100' => 'tca',
			'Thecc.04G263900' => 'tca',
			'Thhalv10003294m.g' => 'esa',
			'Thhalv10009189m.g' => 'esa',
			'TPR.G20736' => 'tpr',
			'TPR.G5650' => 'tpr',
			'TWI09G0019' => 'twi',
			'TWI53G1829' => 'twi',
			'TWI73G1070' => 'twi',
			'unitig_0.g2245' => 'ugi',
			'unitig_52.g17406' => 'ugi',
			'vmacro15478' => 'vma',
			'Zm00001eb038560' => 'zma'
		)
	),
	'data_type' => 'gene_family',
	'gf_id' => 'HOM05D003410',
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D003410'
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'subfamily_family_types' => array(
		(int) 0 => 'ORTHOFAM'
	),
	'parental_family_types' => array(
		(int) 0 => 'HOMFAM'
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'allowed_data_types' => array(
		'GO' => 'Gene Ontology',
		'INTERPRO' => 'InterPro',
		'GENE_FAMILY' => 'Gene Family'
	)
)
$sidebar_info = array(
	'gf_id' => 'HOM05D003410',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '201',
	'num_species' => '89'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$gene_selection = array(
	'parameters' => array(
		(int) 0 => array(
			'data_type' => 'GENE_FAMILY',
			'data_value' => 'HOM05D003410'
		)
	),
	'genes' => array(
		'A06p47590' => 'bna',
		'A09p20730' => 'bna',
		'A10p02530' => 'bna',
		'Aa31LG1G20770' => 'aar',
		'Aa31LG5G3300' => 'aar',
		'AagrBONN_evm.TU.Sc2ySwM_362.1763' => 'aag',
		'Actinidia09517' => 'ach',
		'Actinidia39930' => 'ach',
		'Ah.10g030800' => 'amhyb',
		'AL1G13670' => 'aly',
		'AL8G16140' => 'aly',
		'Aqoxy2G00979' => 'aox',
		'AT1G04070' => 'ath',
		'AT5G43970' => 'ath',
		'Atru.chr4.1916' => 'acertr',
		'Atru.chr5.1834' => 'acertr',
		'AUR62015270' => 'cqu',
		'AUR62018067' => 'cqu',
		'AUR62037221' => 'cqu',
		'BcaB07g30549' => 'bca',
		'BcaB07g30984' => 'bca',
		'BcaC03g16619' => 'bca',
		'BcaC04g21879' => 'bca',
		'BcaC05g24474' => 'bca',
		'BcaC06g34608' => 'bca',
		'BcaC06g34614' => 'bca',
		'BcaC06g34615' => 'bca',
		'BolC2t10496H' => 'bol',
		'BolC5t29012H' => 'bol',
		'BolC7t43173H' => 'bol',
		'BolC7t43180H' => 'bol',
		'BolC9t55525H' => 'bol',
		'BraA06t27627Z' => 'bra',
		'BraA09t37677Z' => 'bra',
		'BraA10t42522Z' => 'bra',
		'C02p44520' => 'bna',
		'C07p26430' => 'bna',
		'C07p26530' => 'bna',
		'C09p26240' => 'bna',
		'CAN.G638.38' => 'can',
		'CAN.G941.30' => 'can',
		'CANSAT01G0813' => 'cansat',
		'CANSAT78G1185' => 'cansat',
		'CARHR003410' => 'chi',
		'CARHR179430' => 'chi',
		'Carub.0001s0322' => 'cru',
		'Carub.0008s0458' => 'cru',
		'Ca_09650_v3' => 'car',
		'Ca_11898_v3' => 'car',
		'Cc03_g06290' => 'ccan',
		'CDE01G0063' => 'cde',
		'CDE02G3003' => 'cde',
		'CDE08G0388' => 'cde',
		'Cfa002479' => 'cfa',
		'Cfa014780' => 'cfa',
		'Cfa021012' => 'cfa',
		'Ciclev10006291m.g' => 'ccl',
		'CiPaw.01G178000' => 'cil',
		'CiPaw.02G107100' => 'cil',
		'CiPaw.03G270300' => 'cil',
		'COL.COLO4_10574' => 'col',
		'COL.COLO4_15962' => 'col',
		'COL.COLO4_28885' => 'col',
		'Cpa.g.sc87.22' => 'cpa',
		'CsaV3_2G012420' => 'csa',
		'CsaV3_3G011700' => 'csa',
		'CSS0004045' => 'camsi',
		'CSS0024044' => 'camsi',
		'CSS0029259' => 'camsi',
		'DCAR_000567' => 'dca',
		'Dinv16396' => 'din',
		'Duzib133G1351' => 'dzi',
		'Duzib138G1667' => 'dzi',
		'Duzib151G0669' => 'dzi',
		'Duzib212G0034' => 'dzi',
		'ECA232G0562' => 'eca',
		'ECA238G3201' => 'eca',
		'EL10Ac3g06578' => 'bvu',
		'Eucgr.K01430' => 'egr',
		'FAN15G2918' => 'fan',
		'FAN23G3142' => 'fan',
		'FAN24G0274' => 'fan',
		'FAN27G2598' => 'fan',
		'FvH4_2g20580' => 'fve',
		'Glyma.10G040200' => 'gma',
		'Glyma.11G168500' => 'gma',
		'Glyma.11G177400' => 'gma',
		'Glyma.13G126900' => 'gma',
		'Gohir.A07G151800' => 'ghi',
		'Gohir.A07G204200' => 'ghi',
		'Gohir.A08G192000' => 'ghi',
		'Gohir.A10G107800' => 'ghi',
		'Gohir.D07G158100' => 'ghi',
		'Gohir.D07G210200' => 'ghi',
		'Gohir.D08G210000' => 'ghi',
		'Gohir.D10G158500' => 'ghi',
		'Gorai.001G181300' => 'gra',
		'Gorai.001G237600' => 'gra',
		'Gorai.004G222400' => 'gra',
		'Gorai.011G178100' => 'gra',
		'GSVIVG01027914001' => 'vvi',
		'GSVIVG01028415001' => 'vvi',
		'HanXRQChr05g0147801' => 'han',
		'HanXRQChr08g0223521' => 'han',
		'HanXRQChr11g0321361' => 'han',
		'Haze_24698' => 'cav',
		'HPP92_025323' => 'vpl',
		'Lalb_Chr03g0036961' => 'lal',
		'Lalb_Chr19g0128521' => 'lal',
		'Lalb_Chr21g0314111' => 'lal',
		'Lj5g0002672' => 'lja',
		'Lj6E621T0' => 'lonja',
		'Lj6g0010954' => 'lja',
		'Lsat_1_v5_gn_0_8120' => 'lsa',
		'Lsat_1_v5_gn_2_104281' => 'lsa',
		'Manes.03G159000' => 'mes',
		'Manes.12G036200' => 'mes',
		'Manes.15G045700' => 'mes',
		'Mapoly0045s0003' => 'mpo',
		'MBI10_g35429_MAGBIO' => 'mbi',
		'MCO09G328' => 'mco',
		'MD00G1060300' => 'mdo',
		'MD13G1221200' => 'mdo',
		'MD15G1267400' => 'mdo',
		'MD15G1267500' => 'mdo',
		'Medtr1g045505' => 'mtr',
		'Medtr1g069560' => 'mtr',
		'Medtr2g055920' => 'mtr',
		'MELO3C023044.2' => 'cme',
		'Migut.D00472' => 'egut',
		'Migut.N00301' => 'egut',
		'Nitab4.5_0000326g0310' => 'nta',
		'Nitab4.5_0000592g0420' => 'nta',
		'Nitab4.5_0002210g0040' => 'nta',
		'Nitab4.5_0009671g0040' => 'nta',
		'Nn1g02957' => 'nnu',
		'Nn3g19777' => 'nnu',
		'Oeu011221.1' => 'oeu',
		'Os02g0131600' => 'osa',
		'Os02g0496900' => 'osa',
		'Peaxi162Scf00319g00058' => 'pax',
		'Peaxi162Scf01157g00006' => 'pax',
		'PGR031G2487' => 'pgr',
		'PGSC0003DMG400013457' => 'stu',
		'Phvul.007G189500' => 'pvu',
		'Potri.002G257200' => 'ptr',
		'Potri.014G192601' => 'ptr',
		'Pp3c24_1490' => 'ppa',
		'Prupe.1G047800' => 'ppe',
		'Prupe.8G216100' => 'ppe',
		'Psat6g062760' => 'psa',
		'PSO013G0207' => 'pso',
		'PSO832G0849' => 'pso',
		'QL06p020998' => 'qlo',
		'QL12p002452' => 'qlo',
		'RcHm_v2.0_Chr4g0395371' => 'rch',
		'RcHm_v2.0_Chr6g0286751' => 'rch',
		'Rhsim02G0043700' => 'rsi',
		'Rhsim04G0172400' => 'rsi',
		'Sabra02G0195600' => 'sbr',
		'Sabra14G0143300' => 'sbr',
		'SalBow4G2851' => 'sbo',
		'SalBow6G3362' => 'sbo',
		'Sc13g0003120' => 'sci',
		'Sed0011790' => 'sed',
		'Sed0015699' => 'sed',
		'Sed0016490' => 'sed',
		'Sed0017794' => 'sed',
		'SEGI_13440' => 'sgi',
		'SHI01392' => 'shi',
		'SMO145G0028' => 'smo',
		'SMO358G0128' => 'smo',
		'Solyc03g005700.1' => 'sly',
		'Solyc06g008120.1' => 'sly',
		'Sopen03g001710' => 'spe',
		'Sopen06g002930' => 'spe',
		'Sp1g02890' => 'spa',
		'Sp2g08800' => 'spa',
		'TAR362G0673' => 'tar',
		'TAR365G0976' => 'tar',
		'TAR369G0184' => 'tar',
		'TAR633G0085' => 'tar',
		'TAR633G0988' => 'tar',
		'TAR633G1475' => 'tar',
		'TAR636G2865' => 'tar',
		'TAR688G0001' => 'tar',
		'THA.LOC104801123' => 'tha',
		'THA.LOC104815972' => 'tha',
		'Thecc.01G251100' => 'tca',
		'Thecc.04G263900' => 'tca',
		'Thhalv10003294m.g' => 'esa',
		'Thhalv10009189m.g' => 'esa',
		'TPR.G20736' => 'tpr',
		'TPR.G5650' => 'tpr',
		'TWI09G0019' => 'twi',
		'TWI53G1829' => 'twi',
		'TWI73G1070' => 'twi',
		'unitig_0.g2245' => 'ugi',
		'unitig_52.g17406' => 'ugi',
		'vmacro15478' => 'vma',
		'Zm00001eb038560' => 'zma'
	)
)
$data_type = 'gene_family'
$gf_id = 'HOM05D003410'
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D003410'
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$subfamily_family_types = array(
	(int) 0 => 'ORTHOFAM'
)
$parental_family_types = array(
	(int) 0 => 'HOMFAM'
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$allowed_data_types = array(
	'GO' => 'Gene Ontology',
	'INTERPRO' => 'InterPro',
	'GENE_FAMILY' => 'Gene Family'
)
$data_identifier_value = 'HOM05D003410'
$data_identifier_description = ''
$adt_title = 'Gene Family'
$adt = 'GENE_FAMILY'
$is_selected = 'selected='selected''
$parameter = array(
	'data_type' => 'GENE_FAMILY',
	'data_value' => 'HOM05D003410'
)
include - APP/View/Tools/similarity_heatmap.ctp, line 77
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 151

Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]
Code Context
                    <label>Source(s)</label>

                    <select class='form form-select' name='ontology_source_group' id='ontology_source_group'>

                        <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D003410',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '201',
		'num_species' => '89'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'gene_selection' => array(
		'parameters' => array(
			(int) 0 => array(
				[maximum depth reached]
			)
		),
		'genes' => array(
			'A06p47590' => 'bna',
			'A09p20730' => 'bna',
			'A10p02530' => 'bna',
			'Aa31LG1G20770' => 'aar',
			'Aa31LG5G3300' => 'aar',
			'AagrBONN_evm.TU.Sc2ySwM_362.1763' => 'aag',
			'Actinidia09517' => 'ach',
			'Actinidia39930' => 'ach',
			'Ah.10g030800' => 'amhyb',
			'AL1G13670' => 'aly',
			'AL8G16140' => 'aly',
			'Aqoxy2G00979' => 'aox',
			'AT1G04070' => 'ath',
			'AT5G43970' => 'ath',
			'Atru.chr4.1916' => 'acertr',
			'Atru.chr5.1834' => 'acertr',
			'AUR62015270' => 'cqu',
			'AUR62018067' => 'cqu',
			'AUR62037221' => 'cqu',
			'BcaB07g30549' => 'bca',
			'BcaB07g30984' => 'bca',
			'BcaC03g16619' => 'bca',
			'BcaC04g21879' => 'bca',
			'BcaC05g24474' => 'bca',
			'BcaC06g34608' => 'bca',
			'BcaC06g34614' => 'bca',
			'BcaC06g34615' => 'bca',
			'BolC2t10496H' => 'bol',
			'BolC5t29012H' => 'bol',
			'BolC7t43173H' => 'bol',
			'BolC7t43180H' => 'bol',
			'BolC9t55525H' => 'bol',
			'BraA06t27627Z' => 'bra',
			'BraA09t37677Z' => 'bra',
			'BraA10t42522Z' => 'bra',
			'C02p44520' => 'bna',
			'C07p26430' => 'bna',
			'C07p26530' => 'bna',
			'C09p26240' => 'bna',
			'CAN.G638.38' => 'can',
			'CAN.G941.30' => 'can',
			'CANSAT01G0813' => 'cansat',
			'CANSAT78G1185' => 'cansat',
			'CARHR003410' => 'chi',
			'CARHR179430' => 'chi',
			'Carub.0001s0322' => 'cru',
			'Carub.0008s0458' => 'cru',
			'Ca_09650_v3' => 'car',
			'Ca_11898_v3' => 'car',
			'Cc03_g06290' => 'ccan',
			'CDE01G0063' => 'cde',
			'CDE02G3003' => 'cde',
			'CDE08G0388' => 'cde',
			'Cfa002479' => 'cfa',
			'Cfa014780' => 'cfa',
			'Cfa021012' => 'cfa',
			'Ciclev10006291m.g' => 'ccl',
			'CiPaw.01G178000' => 'cil',
			'CiPaw.02G107100' => 'cil',
			'CiPaw.03G270300' => 'cil',
			'COL.COLO4_10574' => 'col',
			'COL.COLO4_15962' => 'col',
			'COL.COLO4_28885' => 'col',
			'Cpa.g.sc87.22' => 'cpa',
			'CsaV3_2G012420' => 'csa',
			'CsaV3_3G011700' => 'csa',
			'CSS0004045' => 'camsi',
			'CSS0024044' => 'camsi',
			'CSS0029259' => 'camsi',
			'DCAR_000567' => 'dca',
			'Dinv16396' => 'din',
			'Duzib133G1351' => 'dzi',
			'Duzib138G1667' => 'dzi',
			'Duzib151G0669' => 'dzi',
			'Duzib212G0034' => 'dzi',
			'ECA232G0562' => 'eca',
			'ECA238G3201' => 'eca',
			'EL10Ac3g06578' => 'bvu',
			'Eucgr.K01430' => 'egr',
			'FAN15G2918' => 'fan',
			'FAN23G3142' => 'fan',
			'FAN24G0274' => 'fan',
			'FAN27G2598' => 'fan',
			'FvH4_2g20580' => 'fve',
			'Glyma.10G040200' => 'gma',
			'Glyma.11G168500' => 'gma',
			'Glyma.11G177400' => 'gma',
			'Glyma.13G126900' => 'gma',
			'Gohir.A07G151800' => 'ghi',
			'Gohir.A07G204200' => 'ghi',
			'Gohir.A08G192000' => 'ghi',
			'Gohir.A10G107800' => 'ghi',
			'Gohir.D07G158100' => 'ghi',
			'Gohir.D07G210200' => 'ghi',
			'Gohir.D08G210000' => 'ghi',
			'Gohir.D10G158500' => 'ghi',
			'Gorai.001G181300' => 'gra',
			'Gorai.001G237600' => 'gra',
			'Gorai.004G222400' => 'gra',
			'Gorai.011G178100' => 'gra',
			'GSVIVG01027914001' => 'vvi',
			'GSVIVG01028415001' => 'vvi',
			'HanXRQChr05g0147801' => 'han',
			'HanXRQChr08g0223521' => 'han',
			'HanXRQChr11g0321361' => 'han',
			'Haze_24698' => 'cav',
			'HPP92_025323' => 'vpl',
			'Lalb_Chr03g0036961' => 'lal',
			'Lalb_Chr19g0128521' => 'lal',
			'Lalb_Chr21g0314111' => 'lal',
			'Lj5g0002672' => 'lja',
			'Lj6E621T0' => 'lonja',
			'Lj6g0010954' => 'lja',
			'Lsat_1_v5_gn_0_8120' => 'lsa',
			'Lsat_1_v5_gn_2_104281' => 'lsa',
			'Manes.03G159000' => 'mes',
			'Manes.12G036200' => 'mes',
			'Manes.15G045700' => 'mes',
			'Mapoly0045s0003' => 'mpo',
			'MBI10_g35429_MAGBIO' => 'mbi',
			'MCO09G328' => 'mco',
			'MD00G1060300' => 'mdo',
			'MD13G1221200' => 'mdo',
			'MD15G1267400' => 'mdo',
			'MD15G1267500' => 'mdo',
			'Medtr1g045505' => 'mtr',
			'Medtr1g069560' => 'mtr',
			'Medtr2g055920' => 'mtr',
			'MELO3C023044.2' => 'cme',
			'Migut.D00472' => 'egut',
			'Migut.N00301' => 'egut',
			'Nitab4.5_0000326g0310' => 'nta',
			'Nitab4.5_0000592g0420' => 'nta',
			'Nitab4.5_0002210g0040' => 'nta',
			'Nitab4.5_0009671g0040' => 'nta',
			'Nn1g02957' => 'nnu',
			'Nn3g19777' => 'nnu',
			'Oeu011221.1' => 'oeu',
			'Os02g0131600' => 'osa',
			'Os02g0496900' => 'osa',
			'Peaxi162Scf00319g00058' => 'pax',
			'Peaxi162Scf01157g00006' => 'pax',
			'PGR031G2487' => 'pgr',
			'PGSC0003DMG400013457' => 'stu',
			'Phvul.007G189500' => 'pvu',
			'Potri.002G257200' => 'ptr',
			'Potri.014G192601' => 'ptr',
			'Pp3c24_1490' => 'ppa',
			'Prupe.1G047800' => 'ppe',
			'Prupe.8G216100' => 'ppe',
			'Psat6g062760' => 'psa',
			'PSO013G0207' => 'pso',
			'PSO832G0849' => 'pso',
			'QL06p020998' => 'qlo',
			'QL12p002452' => 'qlo',
			'RcHm_v2.0_Chr4g0395371' => 'rch',
			'RcHm_v2.0_Chr6g0286751' => 'rch',
			'Rhsim02G0043700' => 'rsi',
			'Rhsim04G0172400' => 'rsi',
			'Sabra02G0195600' => 'sbr',
			'Sabra14G0143300' => 'sbr',
			'SalBow4G2851' => 'sbo',
			'SalBow6G3362' => 'sbo',
			'Sc13g0003120' => 'sci',
			'Sed0011790' => 'sed',
			'Sed0015699' => 'sed',
			'Sed0016490' => 'sed',
			'Sed0017794' => 'sed',
			'SEGI_13440' => 'sgi',
			'SHI01392' => 'shi',
			'SMO145G0028' => 'smo',
			'SMO358G0128' => 'smo',
			'Solyc03g005700.1' => 'sly',
			'Solyc06g008120.1' => 'sly',
			'Sopen03g001710' => 'spe',
			'Sopen06g002930' => 'spe',
			'Sp1g02890' => 'spa',
			'Sp2g08800' => 'spa',
			'TAR362G0673' => 'tar',
			'TAR365G0976' => 'tar',
			'TAR369G0184' => 'tar',
			'TAR633G0085' => 'tar',
			'TAR633G0988' => 'tar',
			'TAR633G1475' => 'tar',
			'TAR636G2865' => 'tar',
			'TAR688G0001' => 'tar',
			'THA.LOC104801123' => 'tha',
			'THA.LOC104815972' => 'tha',
			'Thecc.01G251100' => 'tca',
			'Thecc.04G263900' => 'tca',
			'Thhalv10003294m.g' => 'esa',
			'Thhalv10009189m.g' => 'esa',
			'TPR.G20736' => 'tpr',
			'TPR.G5650' => 'tpr',
			'TWI09G0019' => 'twi',
			'TWI53G1829' => 'twi',
			'TWI73G1070' => 'twi',
			'unitig_0.g2245' => 'ugi',
			'unitig_52.g17406' => 'ugi',
			'vmacro15478' => 'vma',
			'Zm00001eb038560' => 'zma'
		)
	),
	'data_type' => 'gene_family',
	'gf_id' => 'HOM05D003410',
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D003410'
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'subfamily_family_types' => array(
		(int) 0 => 'ORTHOFAM'
	),
	'parental_family_types' => array(
		(int) 0 => 'HOMFAM'
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'allowed_data_types' => array(
		'GO' => 'Gene Ontology',
		'INTERPRO' => 'InterPro',
		'GENE_FAMILY' => 'Gene Family'
	)
)
$sidebar_info = array(
	'gf_id' => 'HOM05D003410',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '201',
	'num_species' => '89'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$gene_selection = array(
	'parameters' => array(
		(int) 0 => array(
			'data_type' => 'GENE_FAMILY',
			'data_value' => 'HOM05D003410'
		)
	),
	'genes' => array(
		'A06p47590' => 'bna',
		'A09p20730' => 'bna',
		'A10p02530' => 'bna',
		'Aa31LG1G20770' => 'aar',
		'Aa31LG5G3300' => 'aar',
		'AagrBONN_evm.TU.Sc2ySwM_362.1763' => 'aag',
		'Actinidia09517' => 'ach',
		'Actinidia39930' => 'ach',
		'Ah.10g030800' => 'amhyb',
		'AL1G13670' => 'aly',
		'AL8G16140' => 'aly',
		'Aqoxy2G00979' => 'aox',
		'AT1G04070' => 'ath',
		'AT5G43970' => 'ath',
		'Atru.chr4.1916' => 'acertr',
		'Atru.chr5.1834' => 'acertr',
		'AUR62015270' => 'cqu',
		'AUR62018067' => 'cqu',
		'AUR62037221' => 'cqu',
		'BcaB07g30549' => 'bca',
		'BcaB07g30984' => 'bca',
		'BcaC03g16619' => 'bca',
		'BcaC04g21879' => 'bca',
		'BcaC05g24474' => 'bca',
		'BcaC06g34608' => 'bca',
		'BcaC06g34614' => 'bca',
		'BcaC06g34615' => 'bca',
		'BolC2t10496H' => 'bol',
		'BolC5t29012H' => 'bol',
		'BolC7t43173H' => 'bol',
		'BolC7t43180H' => 'bol',
		'BolC9t55525H' => 'bol',
		'BraA06t27627Z' => 'bra',
		'BraA09t37677Z' => 'bra',
		'BraA10t42522Z' => 'bra',
		'C02p44520' => 'bna',
		'C07p26430' => 'bna',
		'C07p26530' => 'bna',
		'C09p26240' => 'bna',
		'CAN.G638.38' => 'can',
		'CAN.G941.30' => 'can',
		'CANSAT01G0813' => 'cansat',
		'CANSAT78G1185' => 'cansat',
		'CARHR003410' => 'chi',
		'CARHR179430' => 'chi',
		'Carub.0001s0322' => 'cru',
		'Carub.0008s0458' => 'cru',
		'Ca_09650_v3' => 'car',
		'Ca_11898_v3' => 'car',
		'Cc03_g06290' => 'ccan',
		'CDE01G0063' => 'cde',
		'CDE02G3003' => 'cde',
		'CDE08G0388' => 'cde',
		'Cfa002479' => 'cfa',
		'Cfa014780' => 'cfa',
		'Cfa021012' => 'cfa',
		'Ciclev10006291m.g' => 'ccl',
		'CiPaw.01G178000' => 'cil',
		'CiPaw.02G107100' => 'cil',
		'CiPaw.03G270300' => 'cil',
		'COL.COLO4_10574' => 'col',
		'COL.COLO4_15962' => 'col',
		'COL.COLO4_28885' => 'col',
		'Cpa.g.sc87.22' => 'cpa',
		'CsaV3_2G012420' => 'csa',
		'CsaV3_3G011700' => 'csa',
		'CSS0004045' => 'camsi',
		'CSS0024044' => 'camsi',
		'CSS0029259' => 'camsi',
		'DCAR_000567' => 'dca',
		'Dinv16396' => 'din',
		'Duzib133G1351' => 'dzi',
		'Duzib138G1667' => 'dzi',
		'Duzib151G0669' => 'dzi',
		'Duzib212G0034' => 'dzi',
		'ECA232G0562' => 'eca',
		'ECA238G3201' => 'eca',
		'EL10Ac3g06578' => 'bvu',
		'Eucgr.K01430' => 'egr',
		'FAN15G2918' => 'fan',
		'FAN23G3142' => 'fan',
		'FAN24G0274' => 'fan',
		'FAN27G2598' => 'fan',
		'FvH4_2g20580' => 'fve',
		'Glyma.10G040200' => 'gma',
		'Glyma.11G168500' => 'gma',
		'Glyma.11G177400' => 'gma',
		'Glyma.13G126900' => 'gma',
		'Gohir.A07G151800' => 'ghi',
		'Gohir.A07G204200' => 'ghi',
		'Gohir.A08G192000' => 'ghi',
		'Gohir.A10G107800' => 'ghi',
		'Gohir.D07G158100' => 'ghi',
		'Gohir.D07G210200' => 'ghi',
		'Gohir.D08G210000' => 'ghi',
		'Gohir.D10G158500' => 'ghi',
		'Gorai.001G181300' => 'gra',
		'Gorai.001G237600' => 'gra',
		'Gorai.004G222400' => 'gra',
		'Gorai.011G178100' => 'gra',
		'GSVIVG01027914001' => 'vvi',
		'GSVIVG01028415001' => 'vvi',
		'HanXRQChr05g0147801' => 'han',
		'HanXRQChr08g0223521' => 'han',
		'HanXRQChr11g0321361' => 'han',
		'Haze_24698' => 'cav',
		'HPP92_025323' => 'vpl',
		'Lalb_Chr03g0036961' => 'lal',
		'Lalb_Chr19g0128521' => 'lal',
		'Lalb_Chr21g0314111' => 'lal',
		'Lj5g0002672' => 'lja',
		'Lj6E621T0' => 'lonja',
		'Lj6g0010954' => 'lja',
		'Lsat_1_v5_gn_0_8120' => 'lsa',
		'Lsat_1_v5_gn_2_104281' => 'lsa',
		'Manes.03G159000' => 'mes',
		'Manes.12G036200' => 'mes',
		'Manes.15G045700' => 'mes',
		'Mapoly0045s0003' => 'mpo',
		'MBI10_g35429_MAGBIO' => 'mbi',
		'MCO09G328' => 'mco',
		'MD00G1060300' => 'mdo',
		'MD13G1221200' => 'mdo',
		'MD15G1267400' => 'mdo',
		'MD15G1267500' => 'mdo',
		'Medtr1g045505' => 'mtr',
		'Medtr1g069560' => 'mtr',
		'Medtr2g055920' => 'mtr',
		'MELO3C023044.2' => 'cme',
		'Migut.D00472' => 'egut',
		'Migut.N00301' => 'egut',
		'Nitab4.5_0000326g0310' => 'nta',
		'Nitab4.5_0000592g0420' => 'nta',
		'Nitab4.5_0002210g0040' => 'nta',
		'Nitab4.5_0009671g0040' => 'nta',
		'Nn1g02957' => 'nnu',
		'Nn3g19777' => 'nnu',
		'Oeu011221.1' => 'oeu',
		'Os02g0131600' => 'osa',
		'Os02g0496900' => 'osa',
		'Peaxi162Scf00319g00058' => 'pax',
		'Peaxi162Scf01157g00006' => 'pax',
		'PGR031G2487' => 'pgr',
		'PGSC0003DMG400013457' => 'stu',
		'Phvul.007G189500' => 'pvu',
		'Potri.002G257200' => 'ptr',
		'Potri.014G192601' => 'ptr',
		'Pp3c24_1490' => 'ppa',
		'Prupe.1G047800' => 'ppe',
		'Prupe.8G216100' => 'ppe',
		'Psat6g062760' => 'psa',
		'PSO013G0207' => 'pso',
		'PSO832G0849' => 'pso',
		'QL06p020998' => 'qlo',
		'QL12p002452' => 'qlo',
		'RcHm_v2.0_Chr4g0395371' => 'rch',
		'RcHm_v2.0_Chr6g0286751' => 'rch',
		'Rhsim02G0043700' => 'rsi',
		'Rhsim04G0172400' => 'rsi',
		'Sabra02G0195600' => 'sbr',
		'Sabra14G0143300' => 'sbr',
		'SalBow4G2851' => 'sbo',
		'SalBow6G3362' => 'sbo',
		'Sc13g0003120' => 'sci',
		'Sed0011790' => 'sed',
		'Sed0015699' => 'sed',
		'Sed0016490' => 'sed',
		'Sed0017794' => 'sed',
		'SEGI_13440' => 'sgi',
		'SHI01392' => 'shi',
		'SMO145G0028' => 'smo',
		'SMO358G0128' => 'smo',
		'Solyc03g005700.1' => 'sly',
		'Solyc06g008120.1' => 'sly',
		'Sopen03g001710' => 'spe',
		'Sopen06g002930' => 'spe',
		'Sp1g02890' => 'spa',
		'Sp2g08800' => 'spa',
		'TAR362G0673' => 'tar',
		'TAR365G0976' => 'tar',
		'TAR369G0184' => 'tar',
		'TAR633G0085' => 'tar',
		'TAR633G0988' => 'tar',
		'TAR633G1475' => 'tar',
		'TAR636G2865' => 'tar',
		'TAR688G0001' => 'tar',
		'THA.LOC104801123' => 'tha',
		'THA.LOC104815972' => 'tha',
		'Thecc.01G251100' => 'tca',
		'Thecc.04G263900' => 'tca',
		'Thhalv10003294m.g' => 'esa',
		'Thhalv10009189m.g' => 'esa',
		'TPR.G20736' => 'tpr',
		'TPR.G5650' => 'tpr',
		'TWI09G0019' => 'twi',
		'TWI53G1829' => 'twi',
		'TWI73G1070' => 'twi',
		'unitig_0.g2245' => 'ugi',
		'unitig_52.g17406' => 'ugi',
		'vmacro15478' => 'vma',
		'Zm00001eb038560' => 'zma'
	)
)
$data_type = 'gene_family'
$gf_id = 'HOM05D003410'
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D003410'
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$subfamily_family_types = array(
	(int) 0 => 'ORTHOFAM'
)
$parental_family_types = array(
	(int) 0 => 'HOMFAM'
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$allowed_data_types = array(
	'GO' => 'Gene Ontology',
	'INTERPRO' => 'InterPro',
	'GENE_FAMILY' => 'Gene Family'
)
$data_identifier_value = 'HOM05D003410'
$data_identifier_description = ''
$adt_title = 'Gene Family'
$adt = 'GENE_FAMILY'
$is_selected = 'selected='selected''
$parameter = array(
	'data_type' => 'GENE_FAMILY',
	'data_value' => 'HOM05D003410'
)
include - APP/View/Tools/similarity_heatmap.ctp, line 77
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 151

Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]
Code Context
                    <label>Source(s)</label>

                    <select class='form form-select' name='ontology_source_group' id='ontology_source_group'>

                        <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp'
$dataForView = array(
	'sidebar_info' => array(
		'gf_id' => 'HOM05D003410',
		'msa_exists' => array(
			'full' => true,
			'edited' => true
		),
		'tree_exists' => true,
		'num_genes' => '201',
		'num_species' => '89'
	),
	'sidebar' => 'gene_family_sidebar',
	'navigation_bar_info' => array(
		'num_colinearity_runs' => (int) 1,
		'num_colinearity_with_dating_runs' => (int) 0,
		'num_functional_clusters_runs' => (int) 6,
		'has_pan_genomes' => false
	),
	'gene_selection' => array(
		'parameters' => array(
			(int) 0 => array(
				[maximum depth reached]
			)
		),
		'genes' => array(
			'A06p47590' => 'bna',
			'A09p20730' => 'bna',
			'A10p02530' => 'bna',
			'Aa31LG1G20770' => 'aar',
			'Aa31LG5G3300' => 'aar',
			'AagrBONN_evm.TU.Sc2ySwM_362.1763' => 'aag',
			'Actinidia09517' => 'ach',
			'Actinidia39930' => 'ach',
			'Ah.10g030800' => 'amhyb',
			'AL1G13670' => 'aly',
			'AL8G16140' => 'aly',
			'Aqoxy2G00979' => 'aox',
			'AT1G04070' => 'ath',
			'AT5G43970' => 'ath',
			'Atru.chr4.1916' => 'acertr',
			'Atru.chr5.1834' => 'acertr',
			'AUR62015270' => 'cqu',
			'AUR62018067' => 'cqu',
			'AUR62037221' => 'cqu',
			'BcaB07g30549' => 'bca',
			'BcaB07g30984' => 'bca',
			'BcaC03g16619' => 'bca',
			'BcaC04g21879' => 'bca',
			'BcaC05g24474' => 'bca',
			'BcaC06g34608' => 'bca',
			'BcaC06g34614' => 'bca',
			'BcaC06g34615' => 'bca',
			'BolC2t10496H' => 'bol',
			'BolC5t29012H' => 'bol',
			'BolC7t43173H' => 'bol',
			'BolC7t43180H' => 'bol',
			'BolC9t55525H' => 'bol',
			'BraA06t27627Z' => 'bra',
			'BraA09t37677Z' => 'bra',
			'BraA10t42522Z' => 'bra',
			'C02p44520' => 'bna',
			'C07p26430' => 'bna',
			'C07p26530' => 'bna',
			'C09p26240' => 'bna',
			'CAN.G638.38' => 'can',
			'CAN.G941.30' => 'can',
			'CANSAT01G0813' => 'cansat',
			'CANSAT78G1185' => 'cansat',
			'CARHR003410' => 'chi',
			'CARHR179430' => 'chi',
			'Carub.0001s0322' => 'cru',
			'Carub.0008s0458' => 'cru',
			'Ca_09650_v3' => 'car',
			'Ca_11898_v3' => 'car',
			'Cc03_g06290' => 'ccan',
			'CDE01G0063' => 'cde',
			'CDE02G3003' => 'cde',
			'CDE08G0388' => 'cde',
			'Cfa002479' => 'cfa',
			'Cfa014780' => 'cfa',
			'Cfa021012' => 'cfa',
			'Ciclev10006291m.g' => 'ccl',
			'CiPaw.01G178000' => 'cil',
			'CiPaw.02G107100' => 'cil',
			'CiPaw.03G270300' => 'cil',
			'COL.COLO4_10574' => 'col',
			'COL.COLO4_15962' => 'col',
			'COL.COLO4_28885' => 'col',
			'Cpa.g.sc87.22' => 'cpa',
			'CsaV3_2G012420' => 'csa',
			'CsaV3_3G011700' => 'csa',
			'CSS0004045' => 'camsi',
			'CSS0024044' => 'camsi',
			'CSS0029259' => 'camsi',
			'DCAR_000567' => 'dca',
			'Dinv16396' => 'din',
			'Duzib133G1351' => 'dzi',
			'Duzib138G1667' => 'dzi',
			'Duzib151G0669' => 'dzi',
			'Duzib212G0034' => 'dzi',
			'ECA232G0562' => 'eca',
			'ECA238G3201' => 'eca',
			'EL10Ac3g06578' => 'bvu',
			'Eucgr.K01430' => 'egr',
			'FAN15G2918' => 'fan',
			'FAN23G3142' => 'fan',
			'FAN24G0274' => 'fan',
			'FAN27G2598' => 'fan',
			'FvH4_2g20580' => 'fve',
			'Glyma.10G040200' => 'gma',
			'Glyma.11G168500' => 'gma',
			'Glyma.11G177400' => 'gma',
			'Glyma.13G126900' => 'gma',
			'Gohir.A07G151800' => 'ghi',
			'Gohir.A07G204200' => 'ghi',
			'Gohir.A08G192000' => 'ghi',
			'Gohir.A10G107800' => 'ghi',
			'Gohir.D07G158100' => 'ghi',
			'Gohir.D07G210200' => 'ghi',
			'Gohir.D08G210000' => 'ghi',
			'Gohir.D10G158500' => 'ghi',
			'Gorai.001G181300' => 'gra',
			'Gorai.001G237600' => 'gra',
			'Gorai.004G222400' => 'gra',
			'Gorai.011G178100' => 'gra',
			'GSVIVG01027914001' => 'vvi',
			'GSVIVG01028415001' => 'vvi',
			'HanXRQChr05g0147801' => 'han',
			'HanXRQChr08g0223521' => 'han',
			'HanXRQChr11g0321361' => 'han',
			'Haze_24698' => 'cav',
			'HPP92_025323' => 'vpl',
			'Lalb_Chr03g0036961' => 'lal',
			'Lalb_Chr19g0128521' => 'lal',
			'Lalb_Chr21g0314111' => 'lal',
			'Lj5g0002672' => 'lja',
			'Lj6E621T0' => 'lonja',
			'Lj6g0010954' => 'lja',
			'Lsat_1_v5_gn_0_8120' => 'lsa',
			'Lsat_1_v5_gn_2_104281' => 'lsa',
			'Manes.03G159000' => 'mes',
			'Manes.12G036200' => 'mes',
			'Manes.15G045700' => 'mes',
			'Mapoly0045s0003' => 'mpo',
			'MBI10_g35429_MAGBIO' => 'mbi',
			'MCO09G328' => 'mco',
			'MD00G1060300' => 'mdo',
			'MD13G1221200' => 'mdo',
			'MD15G1267400' => 'mdo',
			'MD15G1267500' => 'mdo',
			'Medtr1g045505' => 'mtr',
			'Medtr1g069560' => 'mtr',
			'Medtr2g055920' => 'mtr',
			'MELO3C023044.2' => 'cme',
			'Migut.D00472' => 'egut',
			'Migut.N00301' => 'egut',
			'Nitab4.5_0000326g0310' => 'nta',
			'Nitab4.5_0000592g0420' => 'nta',
			'Nitab4.5_0002210g0040' => 'nta',
			'Nitab4.5_0009671g0040' => 'nta',
			'Nn1g02957' => 'nnu',
			'Nn3g19777' => 'nnu',
			'Oeu011221.1' => 'oeu',
			'Os02g0131600' => 'osa',
			'Os02g0496900' => 'osa',
			'Peaxi162Scf00319g00058' => 'pax',
			'Peaxi162Scf01157g00006' => 'pax',
			'PGR031G2487' => 'pgr',
			'PGSC0003DMG400013457' => 'stu',
			'Phvul.007G189500' => 'pvu',
			'Potri.002G257200' => 'ptr',
			'Potri.014G192601' => 'ptr',
			'Pp3c24_1490' => 'ppa',
			'Prupe.1G047800' => 'ppe',
			'Prupe.8G216100' => 'ppe',
			'Psat6g062760' => 'psa',
			'PSO013G0207' => 'pso',
			'PSO832G0849' => 'pso',
			'QL06p020998' => 'qlo',
			'QL12p002452' => 'qlo',
			'RcHm_v2.0_Chr4g0395371' => 'rch',
			'RcHm_v2.0_Chr6g0286751' => 'rch',
			'Rhsim02G0043700' => 'rsi',
			'Rhsim04G0172400' => 'rsi',
			'Sabra02G0195600' => 'sbr',
			'Sabra14G0143300' => 'sbr',
			'SalBow4G2851' => 'sbo',
			'SalBow6G3362' => 'sbo',
			'Sc13g0003120' => 'sci',
			'Sed0011790' => 'sed',
			'Sed0015699' => 'sed',
			'Sed0016490' => 'sed',
			'Sed0017794' => 'sed',
			'SEGI_13440' => 'sgi',
			'SHI01392' => 'shi',
			'SMO145G0028' => 'smo',
			'SMO358G0128' => 'smo',
			'Solyc03g005700.1' => 'sly',
			'Solyc06g008120.1' => 'sly',
			'Sopen03g001710' => 'spe',
			'Sopen06g002930' => 'spe',
			'Sp1g02890' => 'spa',
			'Sp2g08800' => 'spa',
			'TAR362G0673' => 'tar',
			'TAR365G0976' => 'tar',
			'TAR369G0184' => 'tar',
			'TAR633G0085' => 'tar',
			'TAR633G0988' => 'tar',
			'TAR633G1475' => 'tar',
			'TAR636G2865' => 'tar',
			'TAR688G0001' => 'tar',
			'THA.LOC104801123' => 'tha',
			'THA.LOC104815972' => 'tha',
			'Thecc.01G251100' => 'tca',
			'Thecc.04G263900' => 'tca',
			'Thhalv10003294m.g' => 'esa',
			'Thhalv10009189m.g' => 'esa',
			'TPR.G20736' => 'tpr',
			'TPR.G5650' => 'tpr',
			'TWI09G0019' => 'twi',
			'TWI53G1829' => 'twi',
			'TWI73G1070' => 'twi',
			'unitig_0.g2245' => 'ugi',
			'unitig_52.g17406' => 'ugi',
			'vmacro15478' => 'vma',
			'Zm00001eb038560' => 'zma'
		)
	),
	'data_type' => 'gene_family',
	'gf_id' => 'HOM05D003410',
	'sidebar_information' => array(
		'type' => 'gf',
		'id' => 'HOM05D003410'
	),
	'all_species' => array(
		'acertr' => array(
			'species' => 'acertr',
			'common_name' => 'Acer truncatum',
			'tax_id' => '47965',
			'version' => 'v2.0'
		),
		'ach' => array(
			'species' => 'ach',
			'common_name' => 'Actinidia chinensis',
			'tax_id' => '3625',
			'version' => 'V3.0'
		),
		'aar' => array(
			'species' => 'aar',
			'common_name' => 'Aethionema arabicum',
			'tax_id' => '228871',
			'version' => 'v3.1'
		),
		'amhyb' => array(
			'species' => 'amhyb',
			'common_name' => 'Amaranthus hybridus',
			'tax_id' => '3565',
			'version' => 'v1.0'
		),
		'atr' => array(
			'species' => 'atr',
			'common_name' => 'Amborella trichopoda',
			'tax_id' => '13333',
			'version' => 'JGI v1.0'
		),
		'aag' => array(
			'species' => 'aag',
			'common_name' => 'Anthoceros agrestis',
			'tax_id' => '41834',
			'version' => 'v1.1'
		),
		'aox' => array(
			'species' => 'aox',
			'common_name' => 'Aquilegia oxysepala',
			'tax_id' => '432649',
			'version' => 'v1.0'
		),
		'aly' => array(
			'species' => 'aly',
			'common_name' => 'Arabidopsis lyrata',
			'tax_id' => '59689',
			'version' => 'JGI v2.1'
		),
		'ath' => array(
			'species' => 'ath',
			'common_name' => 'Arabidopsis thaliana',
			'tax_id' => '3702',
			'version' => 'Araport11'
		),
		'arhy' => array(
			'species' => 'arhy',
			'common_name' => 'Arachis hypogaea',
			'tax_id' => '3818',
			'version' => 'v1.0'
		),
		'ama' => array(
			'species' => 'ama',
			'common_name' => 'Avicennia marina',
			'tax_id' => '82927',
			'version' => 'v1.1 20200527'
		),
		'bvu' => array(
			'species' => 'bvu',
			'common_name' => 'Beta vulgaris',
			'tax_id' => '161934',
			'version' => 'EL10_1.0'
		),
		'bca' => array(
			'species' => 'bca',
			'common_name' => 'Brassica carinata',
			'tax_id' => '52824',
			'version' => 'V1.0'
		),
		'bna' => array(
			'species' => 'bna',
			'common_name' => 'Brassica napus',
			'tax_id' => '3708',
			'version' => 'v2.0'
		),
		'bol' => array(
			'species' => 'bol',
			'common_name' => 'Brassica oleracea',
			'tax_id' => '109376',
			'version' => 'v1.0'
		),
		'bra' => array(
			'species' => 'bra',
			'common_name' => 'Brassica rapa',
			'tax_id' => '3711',
			'version' => 'v1.0'
		),
		'camsi' => array(
			'species' => 'camsi',
			'common_name' => 'Camellia sinensis var. sinensis',
			'tax_id' => '542762',
			'version' => 'CSS_ChrLev_20200506'
		),
		'cansat' => array(
			'species' => 'cansat',
			'common_name' => 'Cannabis sativa',
			'tax_id' => '3483',
			'version' => 'cs10'
		),
		'cru' => array(
			'species' => 'cru',
			'common_name' => 'Capsella rubella',
			'tax_id' => '81985',
			'version' => 'JGI v1.1'
		),
		'can' => array(
			'species' => 'can',
			'common_name' => 'Capsicum annuum',
			'tax_id' => '4072',
			'version' => 'Pepper Genome v2.0'
		),
		'chi' => array(
			'species' => 'chi',
			'common_name' => 'Cardamine hirsuta',
			'tax_id' => '50463',
			'version' => 'v1.0'
		),
		'cpa' => array(
			'species' => 'cpa',
			'common_name' => 'Carica papaya',
			'tax_id' => '3649',
			'version' => 'JGI ASGPB0.4'
		),
		'cfa' => array(
			'species' => 'cfa',
			'common_name' => 'Carpinus fangiana',
			'tax_id' => '176857',
			'version' => 'v1.0'
		),
		'cil' => array(
			'species' => 'cil',
			'common_name' => 'Carya illinoinensis',
			'tax_id' => '32201',
			'version' => 'v1.1'
		),
		'cde' => array(
			'species' => 'cde',
			'common_name' => 'Ceratophyllum demersum',
			'tax_id' => '4428',
			'version' => 'v1.0'
		),
		'cbr' => array(
			'species' => 'cbr',
			'common_name' => 'Chara braunii',
			'tax_id' => '69332',
			'version' => 'Cbr1.0'
		),
		'cqu' => array(
			'species' => 'cqu',
			'common_name' => 'Chenopodium quinoa',
			'tax_id' => '63459',
			'version' => 'KAUST v1.0'
		),
		'cre' => array(
			'species' => 'cre',
			'common_name' => 'Chlamydomonas reinhardtii',
			'tax_id' => '3055',
			'version' => 'JGI v5.5'
		),
		'car' => array(
			'species' => 'car',
			'common_name' => 'Cicer arietinum L.',
			'tax_id' => '3827',
			'version' => 'v3.0'
		),
		'cla' => array(
			'species' => 'cla',
			'common_name' => 'Citrullus lanatus',
			'tax_id' => '3654',
			'version' => 'WCG v2.0'
		),
		'ccl' => array(
			'species' => 'ccl',
			'common_name' => 'Citrus clementina',
			'tax_id' => '85681',
			'version' => 'JGI v1.0'
		),
		'ccan' => array(
			'species' => 'ccan',
			'common_name' => 'Coffea canephora',
			'tax_id' => '49390',
			'version' => 'Coffee Genome Hub v1'
		),
		'col' => array(
			'species' => 'col',
			'common_name' => 'Corchorus olitorius',
			'tax_id' => '93759',
			'version' => 'GenBank v1.0'
		),
		'cav' => array(
			'species' => 'cav',
			'common_name' => 'Corylus avellana',
			'tax_id' => '13451',
			'version' => 'v1.0'
		),
		'cme' => array(
			'species' => 'cme',
			'common_name' => 'Cucumis melo',
			'tax_id' => '3656',
			'version' => 'Melonomics v3.6.1'
		),
		'csa' => array(
			'species' => 'csa',
			'common_name' => 'Cucumis sativus L.',
			'tax_id' => '3659',
			'version' => 'v3.0'
		),
		'dca' => array(
			'species' => 'dca',
			'common_name' => 'Daucus carota',
			'tax_id' => '4039',
			'version' => 'JGI v2.0'
		),
		'din' => array(
			'species' => 'din',
			'common_name' => 'Davidia involucrata',
			'tax_id' => '16924',
			'version' => 'v1.0'
		),
		'dzi' => array(
			'species' => 'dzi',
			'common_name' => 'Durio zibethinus',
			'tax_id' => '66656',
			'version' => 'Duzib1.0'
		),
		'eca' => array(
			'species' => 'eca',
			'common_name' => 'Erigeron canadensis',
			'tax_id' => '72917',
			'version' => 'V1.0'
		),
		'egut' => array(
			'species' => 'egut',
			'common_name' => 'Erythranthe guttata',
			'tax_id' => '4155',
			'version' => 'v2.0'
		),
		'egr' => array(
			'species' => 'egr',
			'common_name' => 'Eucalyptus grandis',
			'tax_id' => '71139',
			'version' => 'v2.0'
		),
		'esa' => array(
			'species' => 'esa',
			'common_name' => 'Eutrema salsugineum',
			'tax_id' => '72664',
			'version' => 'v1.0'
		),
		'fve' => array(
			'species' => 'fve',
			'common_name' => 'Fragaria vesca',
			'tax_id' => '57918',
			'version' => 'V4.0.a2'
		),
		'fan' => array(
			'species' => 'fan',
			'common_name' => 'Fragaria x ananassa',
			'tax_id' => '3747',
			'version' => 'V1.0.a1'
		),
		'gma' => array(
			'species' => 'gma',
			'common_name' => 'Glycine max',
			'tax_id' => '3847',
			'version' => 'JGI Wm82.a4.v1'
		),
		'ghi' => array(
			'species' => 'ghi',
			'common_name' => 'Gossypium hirsutum',
			'tax_id' => '3635',
			'version' => 'v2.1'
		),
		'gra' => array(
			'species' => 'gra',
			'common_name' => 'Gossypium raimondii',
			'tax_id' => '29730',
			'version' => 'v2.1'
		),
		'han' => array(
			'species' => 'han',
			'common_name' => 'Helianthus annuus',
			'tax_id' => '4232',
			'version' => 'r1.2'
		),
		'hma' => array(
			'species' => 'hma',
			'common_name' => 'Hydrangea macrophylla',
			'tax_id' => '23110',
			'version' => 'v2.1'
		),
		'lsa' => array(
			'species' => 'lsa',
			'common_name' => 'Lactuca sativa',
			'tax_id' => '4236',
			'version' => 'v8.0'
		),
		'lonja' => array(
			'species' => 'lonja',
			'common_name' => 'Lonicera japonica',
			'tax_id' => '105884',
			'version' => 'v1.0'
		),
		'lja' => array(
			'species' => 'lja',
			'common_name' => 'Lotus japonicus',
			'tax_id' => '34305',
			'version' => 'Lj1.0v1'
		),
		'lal' => array(
			'species' => 'lal',
			'common_name' => 'Lupinus albus',
			'tax_id' => '3870',
			'version' => 'v1.0'
		),
		'mbi' => array(
			'species' => 'mbi',
			'common_name' => 'Magnolia biondii',
			'tax_id' => '86725',
			'version' => 'v1.0'
		),
		'mdo' => array(
			'species' => 'mdo',
			'common_name' => 'Malus domestica',
			'tax_id' => '3750',
			'version' => 'GDDH13 v1.1'
		),
		'mes' => array(
			'species' => 'mes',
			'common_name' => 'Manihot esculenta',
			'tax_id' => '3983',
			'version' => 'v8.1'
		),
		'mpo' => array(
			'species' => 'mpo',
			'common_name' => 'Marchantia polymorpha',
			'tax_id' => '3197',
			'version' => 'JGI v3.1'
		),
		'mtr' => array(
			'species' => 'mtr',
			'common_name' => 'Medicago truncatula',
			'tax_id' => '3880',
			'version' => 'JGI Mt4.0v1'
		),
		'mco' => array(
			'species' => 'mco',
			'common_name' => 'Micromonas commoda',
			'tax_id' => '296587',
			'version' => 'JGI v3.0'
		),
		'nnu' => array(
			'species' => 'nnu',
			'common_name' => 'Nelumbo nucifera',
			'tax_id' => '4432',
			'version' => 'v2.0'
		),
		'nta' => array(
			'species' => 'nta',
			'common_name' => 'Nicotiana tabacum',
			'tax_id' => '4097',
			'version' => 'Edwards2017'
		),
		'oeu' => array(
			'species' => 'oeu',
			'common_name' => 'Olea europaea',
			'tax_id' => '4146',
			'version' => 'v1.0'
		),
		'osa' => array(
			'species' => 'osa',
			'common_name' => 'Oryza sativa ssp. japonica',
			'tax_id' => '39947',
			'version' => 'IRGSP-1.0-2021-05-10'
		),
		'pso' => array(
			'species' => 'pso',
			'common_name' => 'Papaver somniferum',
			'tax_id' => '3469',
			'version' => 'ASM357369v1'
		),
		'pax' => array(
			'species' => 'pax',
			'common_name' => 'Petunia axillaris',
			'tax_id' => '33119',
			'version' => 'Sol Genomics v1.6.2'
		),
		'pvu' => array(
			'species' => 'pvu',
			'common_name' => 'Phaseolus vulgaris',
			'tax_id' => '3885',
			'version' => 'v2.1'
		),
		'ppa' => array(
			'species' => 'ppa',
			'common_name' => 'Physcomitrium patens',
			'tax_id' => '3218',
			'version' => 'JGI v3.3'
		),
		'psa' => array(
			'species' => 'psa',
			'common_name' => 'Pisum sativum',
			'tax_id' => '3888',
			'version' => 'V1.0a'
		),
		'ptr' => array(
			'species' => 'ptr',
			'common_name' => 'Populus trichocarpa',
			'tax_id' => '3694',
			'version' => 'JGI v4.1'
		),
		'pco' => array(
			'species' => 'pco',
			'common_name' => 'Prasinoderma coloniale',
			'tax_id' => '156133',
			'version' => 'v1.0'
		),
		'ppe' => array(
			'species' => 'ppe',
			'common_name' => 'Prunus persica',
			'tax_id' => '3760',
			'version' => 'v2.1'
		),
		'pgr' => array(
			'species' => 'pgr',
			'common_name' => 'Punica granatum',
			'tax_id' => '22663',
			'version' => 'ASM765513v2'
		),
		'qlo' => array(
			'species' => 'qlo',
			'common_name' => 'Quercus lobata',
			'tax_id' => '97700',
			'version' => 'v3.0'
		),
		'rsi' => array(
			'species' => 'rsi',
			'common_name' => 'Rhododendron simsii',
			'tax_id' => '118357',
			'version' => 'v1.0'
		),
		'rch' => array(
			'species' => 'rch',
			'common_name' => 'Rosa chinensis',
			'tax_id' => '74649',
			'version' => 'v2.0'
		),
		'sbr' => array(
			'species' => 'sbr',
			'common_name' => 'Salix brachista',
			'tax_id' => '2182728',
			'version' => 'v1.0'
		),
		'sbo' => array(
			'species' => 'sbo',
			'common_name' => 'Salvia bowleyana',
			'tax_id' => '424416',
			'version' => 'v1.0'
		),
		'shi' => array(
			'species' => 'shi',
			'common_name' => 'Sapria himalayana',
			'tax_id' => '289637',
			'version' => 'v1.0'
		),
		'spa' => array(
			'species' => 'spa',
			'common_name' => 'Schrenkiella parvula',
			'tax_id' => '98039',
			'version' => 'v2.2'
		),
		'sed' => array(
			'species' => 'sed',
			'common_name' => 'Sechium edule',
			'tax_id' => '184140',
			'version' => 'v1.0'
		),
		'smo' => array(
			'species' => 'smo',
			'common_name' => 'Selaginella moellendorffii',
			'tax_id' => '88036',
			'version' => 'v1.0'
		),
		'sun' => array(
			'species' => 'sun',
			'common_name' => 'Selenicereus undatus',
			'tax_id' => '176265',
			'version' => 'v1.0'
		),
		'sgi' => array(
			'species' => 'sgi',
			'common_name' => 'Sequoiadendron giganteum',
			'tax_id' => '99814',
			'version' => 'V2.0'
		),
		'sci' => array(
			'species' => 'sci',
			'common_name' => 'Simmondsia chinensis',
			'tax_id' => '3999',
			'version' => 'sc1'
		),
		'sly' => array(
			'species' => 'sly',
			'common_name' => 'Solanum lycopersicum',
			'tax_id' => '4081',
			'version' => 'ITAG4.0'
		),
		'spe' => array(
			'species' => 'spe',
			'common_name' => 'Solanum pennellii',
			'tax_id' => '28526',
			'version' => 'V2.0'
		),
		'stu' => array(
			'species' => 'stu',
			'common_name' => 'Solanum tuberosum',
			'tax_id' => '4113',
			'version' => 'JGI v4.03'
		),
		'sas' => array(
			'species' => 'sas',
			'common_name' => 'Striga asiatica',
			'tax_id' => '4170',
			'version' => 'v2.02'
		),
		'tha' => array(
			'species' => 'tha',
			'common_name' => 'Tarenaya hassleriana',
			'tax_id' => '28532',
			'version' => 'RefSeq v1'
		),
		'tca' => array(
			'species' => 'tca',
			'common_name' => 'Theobroma cacao',
			'tax_id' => '3641',
			'version' => 'V2.1'
		),
		'tpr' => array(
			'species' => 'tpr',
			'common_name' => 'Trifolium pratense',
			'tax_id' => '57577',
			'version' => 'V2.0'
		),
		'twi' => array(
			'species' => 'twi',
			'common_name' => 'Tripterygium wilfordii',
			'tax_id' => '458696',
			'version' => 'ASM1340144v1'
		),
		'tar' => array(
			'species' => 'tar',
			'common_name' => 'Trochodendron aralioides',
			'tax_id' => '4407',
			'version' => 'v1.0'
		),
		'ugi' => array(
			'species' => 'ugi',
			'common_name' => 'Utricularia gibba',
			'tax_id' => '13748',
			'version' => 'v1.1F'
		),
		'vma' => array(
			'species' => 'vma',
			'common_name' => 'Vaccinium macrocarpon',
			'tax_id' => '13750',
			'version' => 'V1.0'
		),
		'vpl' => array(
			'species' => 'vpl',
			'common_name' => 'Vanilla planifolia',
			'tax_id' => '51239',
			'version' => 'Elo Vpla-A Principal v1.0'
		),
		'vmu' => array(
			'species' => 'vmu',
			'common_name' => 'Vigna mungo',
			'tax_id' => '3915',
			'version' => 'ASM1342719v1'
		),
		'vvi' => array(
			'species' => 'vvi',
			'common_name' => 'Vitis vinifera',
			'tax_id' => '29760',
			'version' => 'Genoscope.12x'
		),
		'zma' => array(
			'species' => 'zma',
			'common_name' => 'Zea mays',
			'tax_id' => '4577',
			'version' => 'NAM v5.0'
		)
	),
	'subfamily_family_types' => array(
		(int) 0 => 'ORTHOFAM'
	),
	'parental_family_types' => array(
		(int) 0 => 'HOMFAM'
	),
	'gene_family_types_information' => array(
		'HOMFAM' => array(
			'id' => 'HOMFAM',
			'name' => 'Homologous gene family',
			'gene_type' => 'coding',
			'parent_id' => '',
			'ancestry' => 'homology'
		),
		'ORTHOFAM' => array(
			'id' => 'ORTHOFAM',
			'name' => 'Orthologous gene family',
			'gene_type' => 'coding',
			'parent_id' => 'HOMFAM',
			'ancestry' => 'orthology'
		)
	),
	'allowed_data_types' => array(
		'GO' => 'Gene Ontology',
		'INTERPRO' => 'InterPro',
		'GENE_FAMILY' => 'Gene Family'
	)
)
$sidebar_info = array(
	'gf_id' => 'HOM05D003410',
	'msa_exists' => array(
		'full' => true,
		'edited' => true
	),
	'tree_exists' => true,
	'num_genes' => '201',
	'num_species' => '89'
)
$sidebar = 'gene_family_sidebar'
$navigation_bar_info = array(
	'num_colinearity_runs' => (int) 1,
	'num_colinearity_with_dating_runs' => (int) 0,
	'num_functional_clusters_runs' => (int) 6,
	'has_pan_genomes' => false
)
$gene_selection = array(
	'parameters' => array(
		(int) 0 => array(
			'data_type' => 'GENE_FAMILY',
			'data_value' => 'HOM05D003410'
		)
	),
	'genes' => array(
		'A06p47590' => 'bna',
		'A09p20730' => 'bna',
		'A10p02530' => 'bna',
		'Aa31LG1G20770' => 'aar',
		'Aa31LG5G3300' => 'aar',
		'AagrBONN_evm.TU.Sc2ySwM_362.1763' => 'aag',
		'Actinidia09517' => 'ach',
		'Actinidia39930' => 'ach',
		'Ah.10g030800' => 'amhyb',
		'AL1G13670' => 'aly',
		'AL8G16140' => 'aly',
		'Aqoxy2G00979' => 'aox',
		'AT1G04070' => 'ath',
		'AT5G43970' => 'ath',
		'Atru.chr4.1916' => 'acertr',
		'Atru.chr5.1834' => 'acertr',
		'AUR62015270' => 'cqu',
		'AUR62018067' => 'cqu',
		'AUR62037221' => 'cqu',
		'BcaB07g30549' => 'bca',
		'BcaB07g30984' => 'bca',
		'BcaC03g16619' => 'bca',
		'BcaC04g21879' => 'bca',
		'BcaC05g24474' => 'bca',
		'BcaC06g34608' => 'bca',
		'BcaC06g34614' => 'bca',
		'BcaC06g34615' => 'bca',
		'BolC2t10496H' => 'bol',
		'BolC5t29012H' => 'bol',
		'BolC7t43173H' => 'bol',
		'BolC7t43180H' => 'bol',
		'BolC9t55525H' => 'bol',
		'BraA06t27627Z' => 'bra',
		'BraA09t37677Z' => 'bra',
		'BraA10t42522Z' => 'bra',
		'C02p44520' => 'bna',
		'C07p26430' => 'bna',
		'C07p26530' => 'bna',
		'C09p26240' => 'bna',
		'CAN.G638.38' => 'can',
		'CAN.G941.30' => 'can',
		'CANSAT01G0813' => 'cansat',
		'CANSAT78G1185' => 'cansat',
		'CARHR003410' => 'chi',
		'CARHR179430' => 'chi',
		'Carub.0001s0322' => 'cru',
		'Carub.0008s0458' => 'cru',
		'Ca_09650_v3' => 'car',
		'Ca_11898_v3' => 'car',
		'Cc03_g06290' => 'ccan',
		'CDE01G0063' => 'cde',
		'CDE02G3003' => 'cde',
		'CDE08G0388' => 'cde',
		'Cfa002479' => 'cfa',
		'Cfa014780' => 'cfa',
		'Cfa021012' => 'cfa',
		'Ciclev10006291m.g' => 'ccl',
		'CiPaw.01G178000' => 'cil',
		'CiPaw.02G107100' => 'cil',
		'CiPaw.03G270300' => 'cil',
		'COL.COLO4_10574' => 'col',
		'COL.COLO4_15962' => 'col',
		'COL.COLO4_28885' => 'col',
		'Cpa.g.sc87.22' => 'cpa',
		'CsaV3_2G012420' => 'csa',
		'CsaV3_3G011700' => 'csa',
		'CSS0004045' => 'camsi',
		'CSS0024044' => 'camsi',
		'CSS0029259' => 'camsi',
		'DCAR_000567' => 'dca',
		'Dinv16396' => 'din',
		'Duzib133G1351' => 'dzi',
		'Duzib138G1667' => 'dzi',
		'Duzib151G0669' => 'dzi',
		'Duzib212G0034' => 'dzi',
		'ECA232G0562' => 'eca',
		'ECA238G3201' => 'eca',
		'EL10Ac3g06578' => 'bvu',
		'Eucgr.K01430' => 'egr',
		'FAN15G2918' => 'fan',
		'FAN23G3142' => 'fan',
		'FAN24G0274' => 'fan',
		'FAN27G2598' => 'fan',
		'FvH4_2g20580' => 'fve',
		'Glyma.10G040200' => 'gma',
		'Glyma.11G168500' => 'gma',
		'Glyma.11G177400' => 'gma',
		'Glyma.13G126900' => 'gma',
		'Gohir.A07G151800' => 'ghi',
		'Gohir.A07G204200' => 'ghi',
		'Gohir.A08G192000' => 'ghi',
		'Gohir.A10G107800' => 'ghi',
		'Gohir.D07G158100' => 'ghi',
		'Gohir.D07G210200' => 'ghi',
		'Gohir.D08G210000' => 'ghi',
		'Gohir.D10G158500' => 'ghi',
		'Gorai.001G181300' => 'gra',
		'Gorai.001G237600' => 'gra',
		'Gorai.004G222400' => 'gra',
		'Gorai.011G178100' => 'gra',
		'GSVIVG01027914001' => 'vvi',
		'GSVIVG01028415001' => 'vvi',
		'HanXRQChr05g0147801' => 'han',
		'HanXRQChr08g0223521' => 'han',
		'HanXRQChr11g0321361' => 'han',
		'Haze_24698' => 'cav',
		'HPP92_025323' => 'vpl',
		'Lalb_Chr03g0036961' => 'lal',
		'Lalb_Chr19g0128521' => 'lal',
		'Lalb_Chr21g0314111' => 'lal',
		'Lj5g0002672' => 'lja',
		'Lj6E621T0' => 'lonja',
		'Lj6g0010954' => 'lja',
		'Lsat_1_v5_gn_0_8120' => 'lsa',
		'Lsat_1_v5_gn_2_104281' => 'lsa',
		'Manes.03G159000' => 'mes',
		'Manes.12G036200' => 'mes',
		'Manes.15G045700' => 'mes',
		'Mapoly0045s0003' => 'mpo',
		'MBI10_g35429_MAGBIO' => 'mbi',
		'MCO09G328' => 'mco',
		'MD00G1060300' => 'mdo',
		'MD13G1221200' => 'mdo',
		'MD15G1267400' => 'mdo',
		'MD15G1267500' => 'mdo',
		'Medtr1g045505' => 'mtr',
		'Medtr1g069560' => 'mtr',
		'Medtr2g055920' => 'mtr',
		'MELO3C023044.2' => 'cme',
		'Migut.D00472' => 'egut',
		'Migut.N00301' => 'egut',
		'Nitab4.5_0000326g0310' => 'nta',
		'Nitab4.5_0000592g0420' => 'nta',
		'Nitab4.5_0002210g0040' => 'nta',
		'Nitab4.5_0009671g0040' => 'nta',
		'Nn1g02957' => 'nnu',
		'Nn3g19777' => 'nnu',
		'Oeu011221.1' => 'oeu',
		'Os02g0131600' => 'osa',
		'Os02g0496900' => 'osa',
		'Peaxi162Scf00319g00058' => 'pax',
		'Peaxi162Scf01157g00006' => 'pax',
		'PGR031G2487' => 'pgr',
		'PGSC0003DMG400013457' => 'stu',
		'Phvul.007G189500' => 'pvu',
		'Potri.002G257200' => 'ptr',
		'Potri.014G192601' => 'ptr',
		'Pp3c24_1490' => 'ppa',
		'Prupe.1G047800' => 'ppe',
		'Prupe.8G216100' => 'ppe',
		'Psat6g062760' => 'psa',
		'PSO013G0207' => 'pso',
		'PSO832G0849' => 'pso',
		'QL06p020998' => 'qlo',
		'QL12p002452' => 'qlo',
		'RcHm_v2.0_Chr4g0395371' => 'rch',
		'RcHm_v2.0_Chr6g0286751' => 'rch',
		'Rhsim02G0043700' => 'rsi',
		'Rhsim04G0172400' => 'rsi',
		'Sabra02G0195600' => 'sbr',
		'Sabra14G0143300' => 'sbr',
		'SalBow4G2851' => 'sbo',
		'SalBow6G3362' => 'sbo',
		'Sc13g0003120' => 'sci',
		'Sed0011790' => 'sed',
		'Sed0015699' => 'sed',
		'Sed0016490' => 'sed',
		'Sed0017794' => 'sed',
		'SEGI_13440' => 'sgi',
		'SHI01392' => 'shi',
		'SMO145G0028' => 'smo',
		'SMO358G0128' => 'smo',
		'Solyc03g005700.1' => 'sly',
		'Solyc06g008120.1' => 'sly',
		'Sopen03g001710' => 'spe',
		'Sopen06g002930' => 'spe',
		'Sp1g02890' => 'spa',
		'Sp2g08800' => 'spa',
		'TAR362G0673' => 'tar',
		'TAR365G0976' => 'tar',
		'TAR369G0184' => 'tar',
		'TAR633G0085' => 'tar',
		'TAR633G0988' => 'tar',
		'TAR633G1475' => 'tar',
		'TAR636G2865' => 'tar',
		'TAR688G0001' => 'tar',
		'THA.LOC104801123' => 'tha',
		'THA.LOC104815972' => 'tha',
		'Thecc.01G251100' => 'tca',
		'Thecc.04G263900' => 'tca',
		'Thhalv10003294m.g' => 'esa',
		'Thhalv10009189m.g' => 'esa',
		'TPR.G20736' => 'tpr',
		'TPR.G5650' => 'tpr',
		'TWI09G0019' => 'twi',
		'TWI53G1829' => 'twi',
		'TWI73G1070' => 'twi',
		'unitig_0.g2245' => 'ugi',
		'unitig_52.g17406' => 'ugi',
		'vmacro15478' => 'vma',
		'Zm00001eb038560' => 'zma'
	)
)
$data_type = 'gene_family'
$gf_id = 'HOM05D003410'
$sidebar_information = array(
	'type' => 'gf',
	'id' => 'HOM05D003410'
)
$all_species = array(
	'acertr' => array(
		'species' => 'acertr',
		'common_name' => 'Acer truncatum',
		'tax_id' => '47965',
		'version' => 'v2.0'
	),
	'ach' => array(
		'species' => 'ach',
		'common_name' => 'Actinidia chinensis',
		'tax_id' => '3625',
		'version' => 'V3.0'
	),
	'aar' => array(
		'species' => 'aar',
		'common_name' => 'Aethionema arabicum',
		'tax_id' => '228871',
		'version' => 'v3.1'
	),
	'amhyb' => array(
		'species' => 'amhyb',
		'common_name' => 'Amaranthus hybridus',
		'tax_id' => '3565',
		'version' => 'v1.0'
	),
	'atr' => array(
		'species' => 'atr',
		'common_name' => 'Amborella trichopoda',
		'tax_id' => '13333',
		'version' => 'JGI v1.0'
	),
	'aag' => array(
		'species' => 'aag',
		'common_name' => 'Anthoceros agrestis',
		'tax_id' => '41834',
		'version' => 'v1.1'
	),
	'aox' => array(
		'species' => 'aox',
		'common_name' => 'Aquilegia oxysepala',
		'tax_id' => '432649',
		'version' => 'v1.0'
	),
	'aly' => array(
		'species' => 'aly',
		'common_name' => 'Arabidopsis lyrata',
		'tax_id' => '59689',
		'version' => 'JGI v2.1'
	),
	'ath' => array(
		'species' => 'ath',
		'common_name' => 'Arabidopsis thaliana',
		'tax_id' => '3702',
		'version' => 'Araport11'
	),
	'arhy' => array(
		'species' => 'arhy',
		'common_name' => 'Arachis hypogaea',
		'tax_id' => '3818',
		'version' => 'v1.0'
	),
	'ama' => array(
		'species' => 'ama',
		'common_name' => 'Avicennia marina',
		'tax_id' => '82927',
		'version' => 'v1.1 20200527'
	),
	'bvu' => array(
		'species' => 'bvu',
		'common_name' => 'Beta vulgaris',
		'tax_id' => '161934',
		'version' => 'EL10_1.0'
	),
	'bca' => array(
		'species' => 'bca',
		'common_name' => 'Brassica carinata',
		'tax_id' => '52824',
		'version' => 'V1.0'
	),
	'bna' => array(
		'species' => 'bna',
		'common_name' => 'Brassica napus',
		'tax_id' => '3708',
		'version' => 'v2.0'
	),
	'bol' => array(
		'species' => 'bol',
		'common_name' => 'Brassica oleracea',
		'tax_id' => '109376',
		'version' => 'v1.0'
	),
	'bra' => array(
		'species' => 'bra',
		'common_name' => 'Brassica rapa',
		'tax_id' => '3711',
		'version' => 'v1.0'
	),
	'camsi' => array(
		'species' => 'camsi',
		'common_name' => 'Camellia sinensis var. sinensis',
		'tax_id' => '542762',
		'version' => 'CSS_ChrLev_20200506'
	),
	'cansat' => array(
		'species' => 'cansat',
		'common_name' => 'Cannabis sativa',
		'tax_id' => '3483',
		'version' => 'cs10'
	),
	'cru' => array(
		'species' => 'cru',
		'common_name' => 'Capsella rubella',
		'tax_id' => '81985',
		'version' => 'JGI v1.1'
	),
	'can' => array(
		'species' => 'can',
		'common_name' => 'Capsicum annuum',
		'tax_id' => '4072',
		'version' => 'Pepper Genome v2.0'
	),
	'chi' => array(
		'species' => 'chi',
		'common_name' => 'Cardamine hirsuta',
		'tax_id' => '50463',
		'version' => 'v1.0'
	),
	'cpa' => array(
		'species' => 'cpa',
		'common_name' => 'Carica papaya',
		'tax_id' => '3649',
		'version' => 'JGI ASGPB0.4'
	),
	'cfa' => array(
		'species' => 'cfa',
		'common_name' => 'Carpinus fangiana',
		'tax_id' => '176857',
		'version' => 'v1.0'
	),
	'cil' => array(
		'species' => 'cil',
		'common_name' => 'Carya illinoinensis',
		'tax_id' => '32201',
		'version' => 'v1.1'
	),
	'cde' => array(
		'species' => 'cde',
		'common_name' => 'Ceratophyllum demersum',
		'tax_id' => '4428',
		'version' => 'v1.0'
	),
	'cbr' => array(
		'species' => 'cbr',
		'common_name' => 'Chara braunii',
		'tax_id' => '69332',
		'version' => 'Cbr1.0'
	),
	'cqu' => array(
		'species' => 'cqu',
		'common_name' => 'Chenopodium quinoa',
		'tax_id' => '63459',
		'version' => 'KAUST v1.0'
	),
	'cre' => array(
		'species' => 'cre',
		'common_name' => 'Chlamydomonas reinhardtii',
		'tax_id' => '3055',
		'version' => 'JGI v5.5'
	),
	'car' => array(
		'species' => 'car',
		'common_name' => 'Cicer arietinum L.',
		'tax_id' => '3827',
		'version' => 'v3.0'
	),
	'cla' => array(
		'species' => 'cla',
		'common_name' => 'Citrullus lanatus',
		'tax_id' => '3654',
		'version' => 'WCG v2.0'
	),
	'ccl' => array(
		'species' => 'ccl',
		'common_name' => 'Citrus clementina',
		'tax_id' => '85681',
		'version' => 'JGI v1.0'
	),
	'ccan' => array(
		'species' => 'ccan',
		'common_name' => 'Coffea canephora',
		'tax_id' => '49390',
		'version' => 'Coffee Genome Hub v1'
	),
	'col' => array(
		'species' => 'col',
		'common_name' => 'Corchorus olitorius',
		'tax_id' => '93759',
		'version' => 'GenBank v1.0'
	),
	'cav' => array(
		'species' => 'cav',
		'common_name' => 'Corylus avellana',
		'tax_id' => '13451',
		'version' => 'v1.0'
	),
	'cme' => array(
		'species' => 'cme',
		'common_name' => 'Cucumis melo',
		'tax_id' => '3656',
		'version' => 'Melonomics v3.6.1'
	),
	'csa' => array(
		'species' => 'csa',
		'common_name' => 'Cucumis sativus L.',
		'tax_id' => '3659',
		'version' => 'v3.0'
	),
	'dca' => array(
		'species' => 'dca',
		'common_name' => 'Daucus carota',
		'tax_id' => '4039',
		'version' => 'JGI v2.0'
	),
	'din' => array(
		'species' => 'din',
		'common_name' => 'Davidia involucrata',
		'tax_id' => '16924',
		'version' => 'v1.0'
	),
	'dzi' => array(
		'species' => 'dzi',
		'common_name' => 'Durio zibethinus',
		'tax_id' => '66656',
		'version' => 'Duzib1.0'
	),
	'eca' => array(
		'species' => 'eca',
		'common_name' => 'Erigeron canadensis',
		'tax_id' => '72917',
		'version' => 'V1.0'
	),
	'egut' => array(
		'species' => 'egut',
		'common_name' => 'Erythranthe guttata',
		'tax_id' => '4155',
		'version' => 'v2.0'
	),
	'egr' => array(
		'species' => 'egr',
		'common_name' => 'Eucalyptus grandis',
		'tax_id' => '71139',
		'version' => 'v2.0'
	),
	'esa' => array(
		'species' => 'esa',
		'common_name' => 'Eutrema salsugineum',
		'tax_id' => '72664',
		'version' => 'v1.0'
	),
	'fve' => array(
		'species' => 'fve',
		'common_name' => 'Fragaria vesca',
		'tax_id' => '57918',
		'version' => 'V4.0.a2'
	),
	'fan' => array(
		'species' => 'fan',
		'common_name' => 'Fragaria x ananassa',
		'tax_id' => '3747',
		'version' => 'V1.0.a1'
	),
	'gma' => array(
		'species' => 'gma',
		'common_name' => 'Glycine max',
		'tax_id' => '3847',
		'version' => 'JGI Wm82.a4.v1'
	),
	'ghi' => array(
		'species' => 'ghi',
		'common_name' => 'Gossypium hirsutum',
		'tax_id' => '3635',
		'version' => 'v2.1'
	),
	'gra' => array(
		'species' => 'gra',
		'common_name' => 'Gossypium raimondii',
		'tax_id' => '29730',
		'version' => 'v2.1'
	),
	'han' => array(
		'species' => 'han',
		'common_name' => 'Helianthus annuus',
		'tax_id' => '4232',
		'version' => 'r1.2'
	),
	'hma' => array(
		'species' => 'hma',
		'common_name' => 'Hydrangea macrophylla',
		'tax_id' => '23110',
		'version' => 'v2.1'
	),
	'lsa' => array(
		'species' => 'lsa',
		'common_name' => 'Lactuca sativa',
		'tax_id' => '4236',
		'version' => 'v8.0'
	),
	'lonja' => array(
		'species' => 'lonja',
		'common_name' => 'Lonicera japonica',
		'tax_id' => '105884',
		'version' => 'v1.0'
	),
	'lja' => array(
		'species' => 'lja',
		'common_name' => 'Lotus japonicus',
		'tax_id' => '34305',
		'version' => 'Lj1.0v1'
	),
	'lal' => array(
		'species' => 'lal',
		'common_name' => 'Lupinus albus',
		'tax_id' => '3870',
		'version' => 'v1.0'
	),
	'mbi' => array(
		'species' => 'mbi',
		'common_name' => 'Magnolia biondii',
		'tax_id' => '86725',
		'version' => 'v1.0'
	),
	'mdo' => array(
		'species' => 'mdo',
		'common_name' => 'Malus domestica',
		'tax_id' => '3750',
		'version' => 'GDDH13 v1.1'
	),
	'mes' => array(
		'species' => 'mes',
		'common_name' => 'Manihot esculenta',
		'tax_id' => '3983',
		'version' => 'v8.1'
	),
	'mpo' => array(
		'species' => 'mpo',
		'common_name' => 'Marchantia polymorpha',
		'tax_id' => '3197',
		'version' => 'JGI v3.1'
	),
	'mtr' => array(
		'species' => 'mtr',
		'common_name' => 'Medicago truncatula',
		'tax_id' => '3880',
		'version' => 'JGI Mt4.0v1'
	),
	'mco' => array(
		'species' => 'mco',
		'common_name' => 'Micromonas commoda',
		'tax_id' => '296587',
		'version' => 'JGI v3.0'
	),
	'nnu' => array(
		'species' => 'nnu',
		'common_name' => 'Nelumbo nucifera',
		'tax_id' => '4432',
		'version' => 'v2.0'
	),
	'nta' => array(
		'species' => 'nta',
		'common_name' => 'Nicotiana tabacum',
		'tax_id' => '4097',
		'version' => 'Edwards2017'
	),
	'oeu' => array(
		'species' => 'oeu',
		'common_name' => 'Olea europaea',
		'tax_id' => '4146',
		'version' => 'v1.0'
	),
	'osa' => array(
		'species' => 'osa',
		'common_name' => 'Oryza sativa ssp. japonica',
		'tax_id' => '39947',
		'version' => 'IRGSP-1.0-2021-05-10'
	),
	'pso' => array(
		'species' => 'pso',
		'common_name' => 'Papaver somniferum',
		'tax_id' => '3469',
		'version' => 'ASM357369v1'
	),
	'pax' => array(
		'species' => 'pax',
		'common_name' => 'Petunia axillaris',
		'tax_id' => '33119',
		'version' => 'Sol Genomics v1.6.2'
	),
	'pvu' => array(
		'species' => 'pvu',
		'common_name' => 'Phaseolus vulgaris',
		'tax_id' => '3885',
		'version' => 'v2.1'
	),
	'ppa' => array(
		'species' => 'ppa',
		'common_name' => 'Physcomitrium patens',
		'tax_id' => '3218',
		'version' => 'JGI v3.3'
	),
	'psa' => array(
		'species' => 'psa',
		'common_name' => 'Pisum sativum',
		'tax_id' => '3888',
		'version' => 'V1.0a'
	),
	'ptr' => array(
		'species' => 'ptr',
		'common_name' => 'Populus trichocarpa',
		'tax_id' => '3694',
		'version' => 'JGI v4.1'
	),
	'pco' => array(
		'species' => 'pco',
		'common_name' => 'Prasinoderma coloniale',
		'tax_id' => '156133',
		'version' => 'v1.0'
	),
	'ppe' => array(
		'species' => 'ppe',
		'common_name' => 'Prunus persica',
		'tax_id' => '3760',
		'version' => 'v2.1'
	),
	'pgr' => array(
		'species' => 'pgr',
		'common_name' => 'Punica granatum',
		'tax_id' => '22663',
		'version' => 'ASM765513v2'
	),
	'qlo' => array(
		'species' => 'qlo',
		'common_name' => 'Quercus lobata',
		'tax_id' => '97700',
		'version' => 'v3.0'
	),
	'rsi' => array(
		'species' => 'rsi',
		'common_name' => 'Rhododendron simsii',
		'tax_id' => '118357',
		'version' => 'v1.0'
	),
	'rch' => array(
		'species' => 'rch',
		'common_name' => 'Rosa chinensis',
		'tax_id' => '74649',
		'version' => 'v2.0'
	),
	'sbr' => array(
		'species' => 'sbr',
		'common_name' => 'Salix brachista',
		'tax_id' => '2182728',
		'version' => 'v1.0'
	),
	'sbo' => array(
		'species' => 'sbo',
		'common_name' => 'Salvia bowleyana',
		'tax_id' => '424416',
		'version' => 'v1.0'
	),
	'shi' => array(
		'species' => 'shi',
		'common_name' => 'Sapria himalayana',
		'tax_id' => '289637',
		'version' => 'v1.0'
	),
	'spa' => array(
		'species' => 'spa',
		'common_name' => 'Schrenkiella parvula',
		'tax_id' => '98039',
		'version' => 'v2.2'
	),
	'sed' => array(
		'species' => 'sed',
		'common_name' => 'Sechium edule',
		'tax_id' => '184140',
		'version' => 'v1.0'
	),
	'smo' => array(
		'species' => 'smo',
		'common_name' => 'Selaginella moellendorffii',
		'tax_id' => '88036',
		'version' => 'v1.0'
	),
	'sun' => array(
		'species' => 'sun',
		'common_name' => 'Selenicereus undatus',
		'tax_id' => '176265',
		'version' => 'v1.0'
	),
	'sgi' => array(
		'species' => 'sgi',
		'common_name' => 'Sequoiadendron giganteum',
		'tax_id' => '99814',
		'version' => 'V2.0'
	),
	'sci' => array(
		'species' => 'sci',
		'common_name' => 'Simmondsia chinensis',
		'tax_id' => '3999',
		'version' => 'sc1'
	),
	'sly' => array(
		'species' => 'sly',
		'common_name' => 'Solanum lycopersicum',
		'tax_id' => '4081',
		'version' => 'ITAG4.0'
	),
	'spe' => array(
		'species' => 'spe',
		'common_name' => 'Solanum pennellii',
		'tax_id' => '28526',
		'version' => 'V2.0'
	),
	'stu' => array(
		'species' => 'stu',
		'common_name' => 'Solanum tuberosum',
		'tax_id' => '4113',
		'version' => 'JGI v4.03'
	),
	'sas' => array(
		'species' => 'sas',
		'common_name' => 'Striga asiatica',
		'tax_id' => '4170',
		'version' => 'v2.02'
	),
	'tha' => array(
		'species' => 'tha',
		'common_name' => 'Tarenaya hassleriana',
		'tax_id' => '28532',
		'version' => 'RefSeq v1'
	),
	'tca' => array(
		'species' => 'tca',
		'common_name' => 'Theobroma cacao',
		'tax_id' => '3641',
		'version' => 'V2.1'
	),
	'tpr' => array(
		'species' => 'tpr',
		'common_name' => 'Trifolium pratense',
		'tax_id' => '57577',
		'version' => 'V2.0'
	),
	'twi' => array(
		'species' => 'twi',
		'common_name' => 'Tripterygium wilfordii',
		'tax_id' => '458696',
		'version' => 'ASM1340144v1'
	),
	'tar' => array(
		'species' => 'tar',
		'common_name' => 'Trochodendron aralioides',
		'tax_id' => '4407',
		'version' => 'v1.0'
	),
	'ugi' => array(
		'species' => 'ugi',
		'common_name' => 'Utricularia gibba',
		'tax_id' => '13748',
		'version' => 'v1.1F'
	),
	'vma' => array(
		'species' => 'vma',
		'common_name' => 'Vaccinium macrocarpon',
		'tax_id' => '13750',
		'version' => 'V1.0'
	),
	'vpl' => array(
		'species' => 'vpl',
		'common_name' => 'Vanilla planifolia',
		'tax_id' => '51239',
		'version' => 'Elo Vpla-A Principal v1.0'
	),
	'vmu' => array(
		'species' => 'vmu',
		'common_name' => 'Vigna mungo',
		'tax_id' => '3915',
		'version' => 'ASM1342719v1'
	),
	'vvi' => array(
		'species' => 'vvi',
		'common_name' => 'Vitis vinifera',
		'tax_id' => '29760',
		'version' => 'Genoscope.12x'
	),
	'zma' => array(
		'species' => 'zma',
		'common_name' => 'Zea mays',
		'tax_id' => '4577',
		'version' => 'NAM v5.0'
	)
)
$subfamily_family_types = array(
	(int) 0 => 'ORTHOFAM'
)
$parental_family_types = array(
	(int) 0 => 'HOMFAM'
)
$gene_family_types_information = array(
	'HOMFAM' => array(
		'id' => 'HOMFAM',
		'name' => 'Homologous gene family',
		'gene_type' => 'coding',
		'parent_id' => '',
		'ancestry' => 'homology'
	),
	'ORTHOFAM' => array(
		'id' => 'ORTHOFAM',
		'name' => 'Orthologous gene family',
		'gene_type' => 'coding',
		'parent_id' => 'HOMFAM',
		'ancestry' => 'orthology'
	)
)
$allowed_data_types = array(
	'GO' => 'Gene Ontology',
	'INTERPRO' => 'InterPro',
	'GENE_FAMILY' => 'Gene Family'
)
$data_identifier_value = 'HOM05D003410'
$data_identifier_description = ''
$adt_title = 'Gene Family'
$adt = 'GENE_FAMILY'
$is_selected = 'selected='selected''
$parameter = array(
	'data_type' => 'GENE_FAMILY',
	'data_value' => 'HOM05D003410'
)
include - APP/View/Tools/similarity_heatmap.ctp, line 77
View::_evaluate() - CORE/Cake/View/View.php, line 971
View::_render() - CORE/Cake/View/View.php, line 933
View::render() - CORE/Cake/View/View.php, line 473
Controller::render() - CORE/Cake/Controller/Controller.php, line 963
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167
[main] - APP/webroot/index.php, line 151