Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002425', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '279', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p16190' => 'bna', 'A06p31070' => 'bna', 'A09p08660' => 'bna', 'A10p20170' => 'bna', 'A10p27760' => 'bna', 'Aa31LG1G17500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5571' => 'aag', 'Actinidia04553' => 'ach', 'Actinidia19619' => 'ach', 'Actinidia28023' => 'ach', 'Actinidia29337' => 'ach', 'Ah.02g123430' => 'amhyb', 'Ah.03g143270' => 'amhyb', 'AL22U10130' => 'aly', 'AL6G19970' => 'aly', 'AL8G41760' => 'aly', 'Aqoxy5G01352' => 'aox', 'Aqoxy6G00822' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68LHHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3LE3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F22E5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XH6SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4VPDJ' => 'arhy', 'AT5G09570' => 'ath', 'AT5G64400' => 'ath', 'ATR0767G013' => 'atr', 'Atru.chr6.1302' => 'acertr', 'AUR62003687' => 'cqu', 'AUR62017999' => 'cqu', 'AUR62043607' => 'cqu', 'BcaB04g19969' => 'bca', 'BcaB05g24496' => 'bca', 'BcaB08g37197' => 'bca', 'BcaC03g13262' => 'bca', 'BcaC03g15136' => 'bca', 'BcaC03g17508' => 'bca', 'BcaC04g23319' => 'bca', 'BolC2t06355H' => 'bol', 'BolC2t08762H' => 'bol', 'BolC3t18447H' => 'bol', 'BolC9t53888H' => 'bol', 'BolC9t59547H' => 'bol', 'BraA02t06679Z' => 'bra', 'BraA06t26050Z' => 'bra', 'BraA09t36515Z' => 'bra', 'BraA10t44827Z' => 'bra', 'C02p26990' => 'bna', 'C03p23370' => 'bna', 'C03p61870' => 'bna', 'C09p09770' => 'bna', 'C09p67870' => 'bna', 'CAN.G162.4' => 'can', 'CAN.G74.13' => 'can', 'CAN.G74.15' => 'can', 'CANSAT54G1313' => 'cansat', 'CARHR203820' => 'chi', 'CARHR278350' => 'chi', 'Carub.0002s1655' => 'cru', 'Carub.0008s2520' => 'cru', 'Ca_18393_v3' => 'car', 'CBR_g23843' => 'cbr', 'Cc02_g20770' => 'ccan', 'Cc10_g08540' => 'ccan', 'CDE04G1856' => 'cde', 'CDE07G0186' => 'cde', 'Ciclev10002776m.g' => 'ccl', 'Ciclev10029537m.g' => 'ccl', 'CiPaw.05G028600' => 'cil', 'CiPaw.06G158800' => 'cil', 'CiPaw.07G163300' => 'cil', 'ClCG08G011560' => 'cla', 'COL.COLO4_32410' => 'col', 'COL.COLO4_34249' => 'col', 'COL.COLO4_35273' => 'col', 'Cpa.g.sc1556.2' => 'cpa', 'Cpa.g.sc20.24' => 'cpa', 'Cre02.g146700' => 'cre', 'CsaV3_2G030140' => 'csa', 'CSS0000895' => 'camsi', 'CSS0029614' => 'camsi', 'CSS0030086' => 'camsi', 'CSS0031914' => 'camsi', 'CSS0041957' => 'camsi', 'DCAR_001853' => 'dca', 'Dinv01512' => 'din', 'Dinv07412' => 'din', 'Dinv12211' => 'din', 'Dinv13564' => 'din', 'Dinv16725' => 'din', 'Dinv24141' => 'din', 'Dinv30053' => 'din', 'Dinv35287' => 'din', 'Dinv36955' => 'din', 'Dinv43849' => 'din', 'Dinv44875' => 'din', 'Duzib052G0188' => 'dzi', 'Duzib052G1175' => 'dzi', 'Duzib132G0972' => 'dzi', 'Duzib248G1145' => 'dzi', 'ECA234G1117' => 'eca', 'ECA236G3977' => 'eca', 'Eucgr.I02610' => 'egr', 'FAN15G1019' => 'fan', 'FAN15G3528' => 'fan', 'FAN20G0126' => 'fan', 'FAN24G0333' => 'fan', 'FAN24G2949' => 'fan', 'FAN27G0918' => 'fan', 'FvH4_2g11490' => 'fve', 'FvH4_2g11500' => 'fve', 'Glyma.07G183000' => 'gma', 'Glyma.08G067000' => 'gma', 'Glyma.13G256000' => 'gma', 'Gohir.A03G177800' => 'ghi', 'Gohir.A06G031100' => 'ghi', 'Gohir.A13G050200' => 'ghi', 'Gohir.D02G201500' => 'ghi', 'Gohir.D06G030300' => 'ghi', 'Gohir.D13G048866' => 'ghi', 'Gohir.D13G049000' => 'ghi', 'Gorai.005G226300' => 'gra', 'Gorai.010G033300' => 'gra', 'Gorai.013G054700' => 'gra', 'GSVIVG01009202001' => 'vvi', 'GSVIVG01012539001' => 'vvi', 'HanXRQChr10g0297741' => 'han', 'HanXRQChr16g0514501' => 'han', 'Haze_10488' => 'cav', 'Haze_10491' => 'cav', 'Haze_22486' => 'cav', 'Hma1.2p1_0010F.1_g006520' => 'hma', 'Hma1.2p1_0369F.1_g137460' => 'hma', 'Hma1.2p1_0908F.1_g235530' => 'hma', 'Hma1.2p1_0908F.1_g235540' => 'hma', 'Hma1.2p1_2737F.1_g327682' => 'hma', 'Hma1.2p1_2737F.1_g327684' => 'hma', 'HPP92_017790' => 'vpl', 'HPP92_018832' => 'vpl', 'HPP92_019595' => 'vpl', 'Hund16518' => 'sun', 'Hund31122' => 'sun', 'Hund31123' => 'sun', 'Lalb_Chr05g0217911' => 'lal', 'Lalb_Chr09g0326941' => 'lal', 'Lalb_Chr16g0383001' => 'lal', 'Lj4g0012171' => 'lja', 'Lj9C347G10' => 'lonja', 'Lsat_1_v5_gn_3_1880' => 'lsa', 'Lsat_1_v5_gn_5_110320' => 'lsa', 'Lsat_1_v5_gn_5_120701' => 'lsa', 'Lsat_1_v5_gn_7_83541' => 'lsa', 'Lsat_1_v5_gn_8_96061' => 'lsa', 'Manes.07G041000' => 'mes', 'Manes.18G056800' => 'mes', 'Mapoly0071s0096' => 'mpo', 'Mapoly0137s0002' => 'mpo', 'MBI16_g30313_MAGBIO' => 'mbi', 'MCO10G279' => 'mco', 'MCO11G598' => 'mco', 'MD05G1048900' => 'mdo', 'MD08G1245600' => 'mdo', 'Medtr2g009700' => 'mtr', 'Medtr2g009710' => 'mtr', 'Medtr4g093770' => 'mtr', 'MELO3C011073.2' => 'cme', 'Migut.B00539' => 'egut', 'Migut.N01102' => 'egut', 'Migut.N01104' => 'egut', 'Migut.N01105' => 'egut', 'MSTRG.16624' => 'ama', 'MSTRG.20275' => 'ama', 'MSTRG.27818' => 'ama', 'MSTRG.5290' => 'ama', 'Nitab4.5_0001259g0060' => 'nta', 'Nitab4.5_0001259g0070' => 'nta', 'Nitab4.5_0005861g0010' => 'nta', 'Nitab4.5_0009446g0030' => 'nta', 'Nitab4.5_0022581g0010' => 'nta', 'Nitab4.5_0027918g0010' => 'nta', 'Nn1g05628' => 'nnu', 'Nn1g05629' => 'nnu', 'Nn5g29830' => 'nnu', 'Nn7g36725' => 'nnu', 'Oeu038173.1' => 'oeu', 'Oeu040882.1' => 'oeu', 'Oeu059900.1' => 'oeu', 'Oeu063548.1' => 'oeu', 'Os03g0685500' => 'osa', 'Os12g0637900' => 'osa', 'Peaxi162Scf00003g03238' => 'pax', 'Peaxi162Scf00152g00827' => 'pax', 'PGR042G0810' => 'pgr', 'PGR042G3069' => 'pgr', 'PGR102G2622' => 'pgr', 'PGR142G1682' => 'pgr', 'PGSC0003DMG400009350' => 'stu', 'PGSC0003DMG400029016' => 'stu', 'Phvul.002G214000' => 'pvu', 'Phvul.006G201300' => 'pvu', 'Potri.001G282900' => 'ptr', 'Potri.009G078100' => 'ptr', 'Pp3c14_20840' => 'ppa', 'Pp3c1_2010' => 'ppa', 'Pp3c2_30940' => 'ppa', 'Pp3c7_22902' => 'ppa', 'PRCOL_00000947' => 'pco', 'Prupe.8G071500' => 'ppe', 'Psat5g245800' => 'psa', 'Psat7g101640' => 'psa', 'PSO170G0844' => 'pso', 'PSO170G5084' => 'pso', 'PSO210G7313' => 'pso', 'QL09p018381' => 'qlo', 'QL09p018387' => 'qlo', 'QL11p025715' => 'qlo', 'QL12p040898' => 'qlo', 'RcHm_v2.0_Chr6g0270231' => 'rch', 'RcHm_v2.0_Chr6g0270481' => 'rch', 'Rhsim05G0100900' => 'rsi', 'Rhsim07G0213100' => 'rsi', 'Rhsim11G0141600' => 'rsi', 'Sabra09G0059800' => 'sbr', 'Sabra16G0176100' => 'sbr', 'SalBow1G0635' => 'sbo', 'SalBow1G4314' => 'sbo', 'SalBow6G0381' => 'sbo', 'SalBow6G2032' => 'sbo', 'SalBow6G4961' => 'sbo', 'Sc16g0000640' => 'sci', 'Sed0004611' => 'sed', 'Sed0026496' => 'sed', 'SGA_v2.0_scaffold32G12933' => 'sas', 'SGA_v2.0_scaffold337G49170' => 'sas', 'SMO147G0066' => 'smo', 'SMO239G0190' => 'smo', 'SMO361G0099' => 'smo', 'SMO361G0435' => 'smo', 'SMO364G0085' => 'smo', 'Solyc04g076600.3' => 'sly', 'Solyc10g047650.3' => 'sly', 'Solyc10g047660.1' => 'sly', 'Sopen00g012000' => 'spe', 'Sopen04g030330' => 'spe', 'Sopen10g018060' => 'spe', 'Sopen10g018070' => 'spe', 'Sp2g27490' => 'spa', 'TAR381G1072' => 'tar', 'TAR625G1276' => 'tar', 'TAR628G0637' => 'tar', 'TAR628G0781' => 'tar', 'THA.LOC104819323' => 'tha', 'Thecc.02G127700' => 'tca', 'Thecc.08G073500' => 'tca', 'Thhalv10005092m.g' => 'esa', 'Thhalv10014959m.g' => 'esa', 'Thhalv10019238m.g' => 'esa', 'TPR.G27436' => 'tpr', 'TPR.G2882' => 'tpr', 'TWI14G0247' => 'twi', 'TWI59G0391' => 'twi', 'TWI59G1057' => 'twi', 'unitig_899.g15644' => 'ugi', 'vmacro01869' => 'vma', 'vmacro04639' => 'vma', 'vmacro13022' => 'vma', 'vmacro19606' => 'vma', 'VMungo0251G1961' => 'vmu', 'Zm00001eb032240' => 'zma', 'Zm00001eb053320' => 'zma', 'Zm00001eb053330' => 'zma', 'Zm00001eb100030' => 'zma', 'Zm00001eb109070' => 'zma', 'Zm00001eb217210' => 'zma', 'Zm00001eb220290' => 'zma', 'Zm00001eb238990' => 'zma', 'Zm00001eb245660' => 'zma', 'Zm00001eb254000' => 'zma', 'Zm00001eb321480' => 'zma', 'Zm00001eb332280' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002425', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002425' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002425', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '279', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002425' ) ), 'genes' => array( 'A02p16190' => 'bna', 'A06p31070' => 'bna', 'A09p08660' => 'bna', 'A10p20170' => 'bna', 'A10p27760' => 'bna', 'Aa31LG1G17500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5571' => 'aag', 'Actinidia04553' => 'ach', 'Actinidia19619' => 'ach', 'Actinidia28023' => 'ach', 'Actinidia29337' => 'ach', 'Ah.02g123430' => 'amhyb', 'Ah.03g143270' => 'amhyb', 'AL22U10130' => 'aly', 'AL6G19970' => 'aly', 'AL8G41760' => 'aly', 'Aqoxy5G01352' => 'aox', 'Aqoxy6G00822' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68LHHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3LE3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F22E5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XH6SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4VPDJ' => 'arhy', 'AT5G09570' => 'ath', 'AT5G64400' => 'ath', 'ATR0767G013' => 'atr', 'Atru.chr6.1302' => 'acertr', 'AUR62003687' => 'cqu', 'AUR62017999' => 'cqu', 'AUR62043607' => 'cqu', 'BcaB04g19969' => 'bca', 'BcaB05g24496' => 'bca', 'BcaB08g37197' => 'bca', 'BcaC03g13262' => 'bca', 'BcaC03g15136' => 'bca', 'BcaC03g17508' => 'bca', 'BcaC04g23319' => 'bca', 'BolC2t06355H' => 'bol', 'BolC2t08762H' => 'bol', 'BolC3t18447H' => 'bol', 'BolC9t53888H' => 'bol', 'BolC9t59547H' => 'bol', 'BraA02t06679Z' => 'bra', 'BraA06t26050Z' => 'bra', 'BraA09t36515Z' => 'bra', 'BraA10t44827Z' => 'bra', 'C02p26990' => 'bna', 'C03p23370' => 'bna', 'C03p61870' => 'bna', 'C09p09770' => 'bna', 'C09p67870' => 'bna', 'CAN.G162.4' => 'can', 'CAN.G74.13' => 'can', 'CAN.G74.15' => 'can', 'CANSAT54G1313' => 'cansat', 'CARHR203820' => 'chi', 'CARHR278350' => 'chi', 'Carub.0002s1655' => 'cru', 'Carub.0008s2520' => 'cru', 'Ca_18393_v3' => 'car', 'CBR_g23843' => 'cbr', 'Cc02_g20770' => 'ccan', 'Cc10_g08540' => 'ccan', 'CDE04G1856' => 'cde', 'CDE07G0186' => 'cde', 'Ciclev10002776m.g' => 'ccl', 'Ciclev10029537m.g' => 'ccl', 'CiPaw.05G028600' => 'cil', 'CiPaw.06G158800' => 'cil', 'CiPaw.07G163300' => 'cil', 'ClCG08G011560' => 'cla', 'COL.COLO4_32410' => 'col', 'COL.COLO4_34249' => 'col', 'COL.COLO4_35273' => 'col', 'Cpa.g.sc1556.2' => 'cpa', 'Cpa.g.sc20.24' => 'cpa', 'Cre02.g146700' => 'cre', 'CsaV3_2G030140' => 'csa', 'CSS0000895' => 'camsi', 'CSS0029614' => 'camsi', 'CSS0030086' => 'camsi', 'CSS0031914' => 'camsi', 'CSS0041957' => 'camsi', 'DCAR_001853' => 'dca', 'Dinv01512' => 'din', 'Dinv07412' => 'din', 'Dinv12211' => 'din', 'Dinv13564' => 'din', 'Dinv16725' => 'din', 'Dinv24141' => 'din', 'Dinv30053' => 'din', 'Dinv35287' => 'din', 'Dinv36955' => 'din', 'Dinv43849' => 'din', 'Dinv44875' => 'din', 'Duzib052G0188' => 'dzi', 'Duzib052G1175' => 'dzi', 'Duzib132G0972' => 'dzi', 'Duzib248G1145' => 'dzi', 'ECA234G1117' => 'eca', 'ECA236G3977' => 'eca', 'Eucgr.I02610' => 'egr', 'FAN15G1019' => 'fan', 'FAN15G3528' => 'fan', 'FAN20G0126' => 'fan', 'FAN24G0333' => 'fan', 'FAN24G2949' => 'fan', 'FAN27G0918' => 'fan', 'FvH4_2g11490' => 'fve', 'FvH4_2g11500' => 'fve', 'Glyma.07G183000' => 'gma', 'Glyma.08G067000' => 'gma', 'Glyma.13G256000' => 'gma', 'Gohir.A03G177800' => 'ghi', 'Gohir.A06G031100' => 'ghi', 'Gohir.A13G050200' => 'ghi', 'Gohir.D02G201500' => 'ghi', 'Gohir.D06G030300' => 'ghi', 'Gohir.D13G048866' => 'ghi', 'Gohir.D13G049000' => 'ghi', 'Gorai.005G226300' => 'gra', 'Gorai.010G033300' => 'gra', 'Gorai.013G054700' => 'gra', 'GSVIVG01009202001' => 'vvi', 'GSVIVG01012539001' => 'vvi', 'HanXRQChr10g0297741' => 'han', 'HanXRQChr16g0514501' => 'han', 'Haze_10488' => 'cav', 'Haze_10491' => 'cav', 'Haze_22486' => 'cav', 'Hma1.2p1_0010F.1_g006520' => 'hma', 'Hma1.2p1_0369F.1_g137460' => 'hma', 'Hma1.2p1_0908F.1_g235530' => 'hma', 'Hma1.2p1_0908F.1_g235540' => 'hma', 'Hma1.2p1_2737F.1_g327682' => 'hma', 'Hma1.2p1_2737F.1_g327684' => 'hma', 'HPP92_017790' => 'vpl', 'HPP92_018832' => 'vpl', 'HPP92_019595' => 'vpl', 'Hund16518' => 'sun', 'Hund31122' => 'sun', 'Hund31123' => 'sun', 'Lalb_Chr05g0217911' => 'lal', 'Lalb_Chr09g0326941' => 'lal', 'Lalb_Chr16g0383001' => 'lal', 'Lj4g0012171' => 'lja', 'Lj9C347G10' => 'lonja', 'Lsat_1_v5_gn_3_1880' => 'lsa', 'Lsat_1_v5_gn_5_110320' => 'lsa', 'Lsat_1_v5_gn_5_120701' => 'lsa', 'Lsat_1_v5_gn_7_83541' => 'lsa', 'Lsat_1_v5_gn_8_96061' => 'lsa', 'Manes.07G041000' => 'mes', 'Manes.18G056800' => 'mes', 'Mapoly0071s0096' => 'mpo', 'Mapoly0137s0002' => 'mpo', 'MBI16_g30313_MAGBIO' => 'mbi', 'MCO10G279' => 'mco', 'MCO11G598' => 'mco', 'MD05G1048900' => 'mdo', 'MD08G1245600' => 'mdo', 'Medtr2g009700' => 'mtr', 'Medtr2g009710' => 'mtr', 'Medtr4g093770' => 'mtr', 'MELO3C011073.2' => 'cme', 'Migut.B00539' => 'egut', 'Migut.N01102' => 'egut', 'Migut.N01104' => 'egut', 'Migut.N01105' => 'egut', 'MSTRG.16624' => 'ama', 'MSTRG.20275' => 'ama', 'MSTRG.27818' => 'ama', 'MSTRG.5290' => 'ama', 'Nitab4.5_0001259g0060' => 'nta', 'Nitab4.5_0001259g0070' => 'nta', 'Nitab4.5_0005861g0010' => 'nta', 'Nitab4.5_0009446g0030' => 'nta', 'Nitab4.5_0022581g0010' => 'nta', 'Nitab4.5_0027918g0010' => 'nta', 'Nn1g05628' => 'nnu', 'Nn1g05629' => 'nnu', 'Nn5g29830' => 'nnu', 'Nn7g36725' => 'nnu', 'Oeu038173.1' => 'oeu', 'Oeu040882.1' => 'oeu', 'Oeu059900.1' => 'oeu', 'Oeu063548.1' => 'oeu', 'Os03g0685500' => 'osa', 'Os12g0637900' => 'osa', 'Peaxi162Scf00003g03238' => 'pax', 'Peaxi162Scf00152g00827' => 'pax', 'PGR042G0810' => 'pgr', 'PGR042G3069' => 'pgr', 'PGR102G2622' => 'pgr', 'PGR142G1682' => 'pgr', 'PGSC0003DMG400009350' => 'stu', 'PGSC0003DMG400029016' => 'stu', 'Phvul.002G214000' => 'pvu', 'Phvul.006G201300' => 'pvu', 'Potri.001G282900' => 'ptr', 'Potri.009G078100' => 'ptr', 'Pp3c14_20840' => 'ppa', 'Pp3c1_2010' => 'ppa', 'Pp3c2_30940' => 'ppa', 'Pp3c7_22902' => 'ppa', 'PRCOL_00000947' => 'pco', 'Prupe.8G071500' => 'ppe', 'Psat5g245800' => 'psa', 'Psat7g101640' => 'psa', 'PSO170G0844' => 'pso', 'PSO170G5084' => 'pso', 'PSO210G7313' => 'pso', 'QL09p018381' => 'qlo', 'QL09p018387' => 'qlo', 'QL11p025715' => 'qlo', 'QL12p040898' => 'qlo', 'RcHm_v2.0_Chr6g0270231' => 'rch', 'RcHm_v2.0_Chr6g0270481' => 'rch', 'Rhsim05G0100900' => 'rsi', 'Rhsim07G0213100' => 'rsi', 'Rhsim11G0141600' => 'rsi', 'Sabra09G0059800' => 'sbr', 'Sabra16G0176100' => 'sbr', 'SalBow1G0635' => 'sbo', 'SalBow1G4314' => 'sbo', 'SalBow6G0381' => 'sbo', 'SalBow6G2032' => 'sbo', 'SalBow6G4961' => 'sbo', 'Sc16g0000640' => 'sci', 'Sed0004611' => 'sed', 'Sed0026496' => 'sed', 'SGA_v2.0_scaffold32G12933' => 'sas', 'SGA_v2.0_scaffold337G49170' => 'sas', 'SMO147G0066' => 'smo', 'SMO239G0190' => 'smo', 'SMO361G0099' => 'smo', 'SMO361G0435' => 'smo', 'SMO364G0085' => 'smo', 'Solyc04g076600.3' => 'sly', 'Solyc10g047650.3' => 'sly', 'Solyc10g047660.1' => 'sly', 'Sopen00g012000' => 'spe', 'Sopen04g030330' => 'spe', 'Sopen10g018060' => 'spe', 'Sopen10g018070' => 'spe', 'Sp2g27490' => 'spa', 'TAR381G1072' => 'tar', 'TAR625G1276' => 'tar', 'TAR628G0637' => 'tar', 'TAR628G0781' => 'tar', 'THA.LOC104819323' => 'tha', 'Thecc.02G127700' => 'tca', 'Thecc.08G073500' => 'tca', 'Thhalv10005092m.g' => 'esa', 'Thhalv10014959m.g' => 'esa', 'Thhalv10019238m.g' => 'esa', 'TPR.G27436' => 'tpr', 'TPR.G2882' => 'tpr', 'TWI14G0247' => 'twi', 'TWI59G0391' => 'twi', 'TWI59G1057' => 'twi', 'unitig_899.g15644' => 'ugi', 'vmacro01869' => 'vma', 'vmacro04639' => 'vma', 'vmacro13022' => 'vma', 'vmacro19606' => 'vma', 'VMungo0251G1961' => 'vmu', 'Zm00001eb032240' => 'zma', 'Zm00001eb053320' => 'zma', 'Zm00001eb053330' => 'zma', 'Zm00001eb100030' => 'zma', 'Zm00001eb109070' => 'zma', 'Zm00001eb217210' => 'zma', 'Zm00001eb220290' => 'zma', 'Zm00001eb238990' => 'zma', 'Zm00001eb245660' => 'zma', 'Zm00001eb254000' => 'zma', 'Zm00001eb321480' => 'zma', 'Zm00001eb332280' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002425' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002425' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002425' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002425' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002425', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '279', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p16190' => 'bna', 'A06p31070' => 'bna', 'A09p08660' => 'bna', 'A10p20170' => 'bna', 'A10p27760' => 'bna', 'Aa31LG1G17500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5571' => 'aag', 'Actinidia04553' => 'ach', 'Actinidia19619' => 'ach', 'Actinidia28023' => 'ach', 'Actinidia29337' => 'ach', 'Ah.02g123430' => 'amhyb', 'Ah.03g143270' => 'amhyb', 'AL22U10130' => 'aly', 'AL6G19970' => 'aly', 'AL8G41760' => 'aly', 'Aqoxy5G01352' => 'aox', 'Aqoxy6G00822' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68LHHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3LE3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F22E5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XH6SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4VPDJ' => 'arhy', 'AT5G09570' => 'ath', 'AT5G64400' => 'ath', 'ATR0767G013' => 'atr', 'Atru.chr6.1302' => 'acertr', 'AUR62003687' => 'cqu', 'AUR62017999' => 'cqu', 'AUR62043607' => 'cqu', 'BcaB04g19969' => 'bca', 'BcaB05g24496' => 'bca', 'BcaB08g37197' => 'bca', 'BcaC03g13262' => 'bca', 'BcaC03g15136' => 'bca', 'BcaC03g17508' => 'bca', 'BcaC04g23319' => 'bca', 'BolC2t06355H' => 'bol', 'BolC2t08762H' => 'bol', 'BolC3t18447H' => 'bol', 'BolC9t53888H' => 'bol', 'BolC9t59547H' => 'bol', 'BraA02t06679Z' => 'bra', 'BraA06t26050Z' => 'bra', 'BraA09t36515Z' => 'bra', 'BraA10t44827Z' => 'bra', 'C02p26990' => 'bna', 'C03p23370' => 'bna', 'C03p61870' => 'bna', 'C09p09770' => 'bna', 'C09p67870' => 'bna', 'CAN.G162.4' => 'can', 'CAN.G74.13' => 'can', 'CAN.G74.15' => 'can', 'CANSAT54G1313' => 'cansat', 'CARHR203820' => 'chi', 'CARHR278350' => 'chi', 'Carub.0002s1655' => 'cru', 'Carub.0008s2520' => 'cru', 'Ca_18393_v3' => 'car', 'CBR_g23843' => 'cbr', 'Cc02_g20770' => 'ccan', 'Cc10_g08540' => 'ccan', 'CDE04G1856' => 'cde', 'CDE07G0186' => 'cde', 'Ciclev10002776m.g' => 'ccl', 'Ciclev10029537m.g' => 'ccl', 'CiPaw.05G028600' => 'cil', 'CiPaw.06G158800' => 'cil', 'CiPaw.07G163300' => 'cil', 'ClCG08G011560' => 'cla', 'COL.COLO4_32410' => 'col', 'COL.COLO4_34249' => 'col', 'COL.COLO4_35273' => 'col', 'Cpa.g.sc1556.2' => 'cpa', 'Cpa.g.sc20.24' => 'cpa', 'Cre02.g146700' => 'cre', 'CsaV3_2G030140' => 'csa', 'CSS0000895' => 'camsi', 'CSS0029614' => 'camsi', 'CSS0030086' => 'camsi', 'CSS0031914' => 'camsi', 'CSS0041957' => 'camsi', 'DCAR_001853' => 'dca', 'Dinv01512' => 'din', 'Dinv07412' => 'din', 'Dinv12211' => 'din', 'Dinv13564' => 'din', 'Dinv16725' => 'din', 'Dinv24141' => 'din', 'Dinv30053' => 'din', 'Dinv35287' => 'din', 'Dinv36955' => 'din', 'Dinv43849' => 'din', 'Dinv44875' => 'din', 'Duzib052G0188' => 'dzi', 'Duzib052G1175' => 'dzi', 'Duzib132G0972' => 'dzi', 'Duzib248G1145' => 'dzi', 'ECA234G1117' => 'eca', 'ECA236G3977' => 'eca', 'Eucgr.I02610' => 'egr', 'FAN15G1019' => 'fan', 'FAN15G3528' => 'fan', 'FAN20G0126' => 'fan', 'FAN24G0333' => 'fan', 'FAN24G2949' => 'fan', 'FAN27G0918' => 'fan', 'FvH4_2g11490' => 'fve', 'FvH4_2g11500' => 'fve', 'Glyma.07G183000' => 'gma', 'Glyma.08G067000' => 'gma', 'Glyma.13G256000' => 'gma', 'Gohir.A03G177800' => 'ghi', 'Gohir.A06G031100' => 'ghi', 'Gohir.A13G050200' => 'ghi', 'Gohir.D02G201500' => 'ghi', 'Gohir.D06G030300' => 'ghi', 'Gohir.D13G048866' => 'ghi', 'Gohir.D13G049000' => 'ghi', 'Gorai.005G226300' => 'gra', 'Gorai.010G033300' => 'gra', 'Gorai.013G054700' => 'gra', 'GSVIVG01009202001' => 'vvi', 'GSVIVG01012539001' => 'vvi', 'HanXRQChr10g0297741' => 'han', 'HanXRQChr16g0514501' => 'han', 'Haze_10488' => 'cav', 'Haze_10491' => 'cav', 'Haze_22486' => 'cav', 'Hma1.2p1_0010F.1_g006520' => 'hma', 'Hma1.2p1_0369F.1_g137460' => 'hma', 'Hma1.2p1_0908F.1_g235530' => 'hma', 'Hma1.2p1_0908F.1_g235540' => 'hma', 'Hma1.2p1_2737F.1_g327682' => 'hma', 'Hma1.2p1_2737F.1_g327684' => 'hma', 'HPP92_017790' => 'vpl', 'HPP92_018832' => 'vpl', 'HPP92_019595' => 'vpl', 'Hund16518' => 'sun', 'Hund31122' => 'sun', 'Hund31123' => 'sun', 'Lalb_Chr05g0217911' => 'lal', 'Lalb_Chr09g0326941' => 'lal', 'Lalb_Chr16g0383001' => 'lal', 'Lj4g0012171' => 'lja', 'Lj9C347G10' => 'lonja', 'Lsat_1_v5_gn_3_1880' => 'lsa', 'Lsat_1_v5_gn_5_110320' => 'lsa', 'Lsat_1_v5_gn_5_120701' => 'lsa', 'Lsat_1_v5_gn_7_83541' => 'lsa', 'Lsat_1_v5_gn_8_96061' => 'lsa', 'Manes.07G041000' => 'mes', 'Manes.18G056800' => 'mes', 'Mapoly0071s0096' => 'mpo', 'Mapoly0137s0002' => 'mpo', 'MBI16_g30313_MAGBIO' => 'mbi', 'MCO10G279' => 'mco', 'MCO11G598' => 'mco', 'MD05G1048900' => 'mdo', 'MD08G1245600' => 'mdo', 'Medtr2g009700' => 'mtr', 'Medtr2g009710' => 'mtr', 'Medtr4g093770' => 'mtr', 'MELO3C011073.2' => 'cme', 'Migut.B00539' => 'egut', 'Migut.N01102' => 'egut', 'Migut.N01104' => 'egut', 'Migut.N01105' => 'egut', 'MSTRG.16624' => 'ama', 'MSTRG.20275' => 'ama', 'MSTRG.27818' => 'ama', 'MSTRG.5290' => 'ama', 'Nitab4.5_0001259g0060' => 'nta', 'Nitab4.5_0001259g0070' => 'nta', 'Nitab4.5_0005861g0010' => 'nta', 'Nitab4.5_0009446g0030' => 'nta', 'Nitab4.5_0022581g0010' => 'nta', 'Nitab4.5_0027918g0010' => 'nta', 'Nn1g05628' => 'nnu', 'Nn1g05629' => 'nnu', 'Nn5g29830' => 'nnu', 'Nn7g36725' => 'nnu', 'Oeu038173.1' => 'oeu', 'Oeu040882.1' => 'oeu', 'Oeu059900.1' => 'oeu', 'Oeu063548.1' => 'oeu', 'Os03g0685500' => 'osa', 'Os12g0637900' => 'osa', 'Peaxi162Scf00003g03238' => 'pax', 'Peaxi162Scf00152g00827' => 'pax', 'PGR042G0810' => 'pgr', 'PGR042G3069' => 'pgr', 'PGR102G2622' => 'pgr', 'PGR142G1682' => 'pgr', 'PGSC0003DMG400009350' => 'stu', 'PGSC0003DMG400029016' => 'stu', 'Phvul.002G214000' => 'pvu', 'Phvul.006G201300' => 'pvu', 'Potri.001G282900' => 'ptr', 'Potri.009G078100' => 'ptr', 'Pp3c14_20840' => 'ppa', 'Pp3c1_2010' => 'ppa', 'Pp3c2_30940' => 'ppa', 'Pp3c7_22902' => 'ppa', 'PRCOL_00000947' => 'pco', 'Prupe.8G071500' => 'ppe', 'Psat5g245800' => 'psa', 'Psat7g101640' => 'psa', 'PSO170G0844' => 'pso', 'PSO170G5084' => 'pso', 'PSO210G7313' => 'pso', 'QL09p018381' => 'qlo', 'QL09p018387' => 'qlo', 'QL11p025715' => 'qlo', 'QL12p040898' => 'qlo', 'RcHm_v2.0_Chr6g0270231' => 'rch', 'RcHm_v2.0_Chr6g0270481' => 'rch', 'Rhsim05G0100900' => 'rsi', 'Rhsim07G0213100' => 'rsi', 'Rhsim11G0141600' => 'rsi', 'Sabra09G0059800' => 'sbr', 'Sabra16G0176100' => 'sbr', 'SalBow1G0635' => 'sbo', 'SalBow1G4314' => 'sbo', 'SalBow6G0381' => 'sbo', 'SalBow6G2032' => 'sbo', 'SalBow6G4961' => 'sbo', 'Sc16g0000640' => 'sci', 'Sed0004611' => 'sed', 'Sed0026496' => 'sed', 'SGA_v2.0_scaffold32G12933' => 'sas', 'SGA_v2.0_scaffold337G49170' => 'sas', 'SMO147G0066' => 'smo', 'SMO239G0190' => 'smo', 'SMO361G0099' => 'smo', 'SMO361G0435' => 'smo', 'SMO364G0085' => 'smo', 'Solyc04g076600.3' => 'sly', 'Solyc10g047650.3' => 'sly', 'Solyc10g047660.1' => 'sly', 'Sopen00g012000' => 'spe', 'Sopen04g030330' => 'spe', 'Sopen10g018060' => 'spe', 'Sopen10g018070' => 'spe', 'Sp2g27490' => 'spa', 'TAR381G1072' => 'tar', 'TAR625G1276' => 'tar', 'TAR628G0637' => 'tar', 'TAR628G0781' => 'tar', 'THA.LOC104819323' => 'tha', 'Thecc.02G127700' => 'tca', 'Thecc.08G073500' => 'tca', 'Thhalv10005092m.g' => 'esa', 'Thhalv10014959m.g' => 'esa', 'Thhalv10019238m.g' => 'esa', 'TPR.G27436' => 'tpr', 'TPR.G2882' => 'tpr', 'TWI14G0247' => 'twi', 'TWI59G0391' => 'twi', 'TWI59G1057' => 'twi', 'unitig_899.g15644' => 'ugi', 'vmacro01869' => 'vma', 'vmacro04639' => 'vma', 'vmacro13022' => 'vma', 'vmacro19606' => 'vma', 'VMungo0251G1961' => 'vmu', 'Zm00001eb032240' => 'zma', 'Zm00001eb053320' => 'zma', 'Zm00001eb053330' => 'zma', 'Zm00001eb100030' => 'zma', 'Zm00001eb109070' => 'zma', 'Zm00001eb217210' => 'zma', 'Zm00001eb220290' => 'zma', 'Zm00001eb238990' => 'zma', 'Zm00001eb245660' => 'zma', 'Zm00001eb254000' => 'zma', 'Zm00001eb321480' => 'zma', 'Zm00001eb332280' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002425', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002425' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002425', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '279', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002425' ) ), 'genes' => array( 'A02p16190' => 'bna', 'A06p31070' => 'bna', 'A09p08660' => 'bna', 'A10p20170' => 'bna', 'A10p27760' => 'bna', 'Aa31LG1G17500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5571' => 'aag', 'Actinidia04553' => 'ach', 'Actinidia19619' => 'ach', 'Actinidia28023' => 'ach', 'Actinidia29337' => 'ach', 'Ah.02g123430' => 'amhyb', 'Ah.03g143270' => 'amhyb', 'AL22U10130' => 'aly', 'AL6G19970' => 'aly', 'AL8G41760' => 'aly', 'Aqoxy5G01352' => 'aox', 'Aqoxy6G00822' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68LHHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3LE3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F22E5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XH6SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4VPDJ' => 'arhy', 'AT5G09570' => 'ath', 'AT5G64400' => 'ath', 'ATR0767G013' => 'atr', 'Atru.chr6.1302' => 'acertr', 'AUR62003687' => 'cqu', 'AUR62017999' => 'cqu', 'AUR62043607' => 'cqu', 'BcaB04g19969' => 'bca', 'BcaB05g24496' => 'bca', 'BcaB08g37197' => 'bca', 'BcaC03g13262' => 'bca', 'BcaC03g15136' => 'bca', 'BcaC03g17508' => 'bca', 'BcaC04g23319' => 'bca', 'BolC2t06355H' => 'bol', 'BolC2t08762H' => 'bol', 'BolC3t18447H' => 'bol', 'BolC9t53888H' => 'bol', 'BolC9t59547H' => 'bol', 'BraA02t06679Z' => 'bra', 'BraA06t26050Z' => 'bra', 'BraA09t36515Z' => 'bra', 'BraA10t44827Z' => 'bra', 'C02p26990' => 'bna', 'C03p23370' => 'bna', 'C03p61870' => 'bna', 'C09p09770' => 'bna', 'C09p67870' => 'bna', 'CAN.G162.4' => 'can', 'CAN.G74.13' => 'can', 'CAN.G74.15' => 'can', 'CANSAT54G1313' => 'cansat', 'CARHR203820' => 'chi', 'CARHR278350' => 'chi', 'Carub.0002s1655' => 'cru', 'Carub.0008s2520' => 'cru', 'Ca_18393_v3' => 'car', 'CBR_g23843' => 'cbr', 'Cc02_g20770' => 'ccan', 'Cc10_g08540' => 'ccan', 'CDE04G1856' => 'cde', 'CDE07G0186' => 'cde', 'Ciclev10002776m.g' => 'ccl', 'Ciclev10029537m.g' => 'ccl', 'CiPaw.05G028600' => 'cil', 'CiPaw.06G158800' => 'cil', 'CiPaw.07G163300' => 'cil', 'ClCG08G011560' => 'cla', 'COL.COLO4_32410' => 'col', 'COL.COLO4_34249' => 'col', 'COL.COLO4_35273' => 'col', 'Cpa.g.sc1556.2' => 'cpa', 'Cpa.g.sc20.24' => 'cpa', 'Cre02.g146700' => 'cre', 'CsaV3_2G030140' => 'csa', 'CSS0000895' => 'camsi', 'CSS0029614' => 'camsi', 'CSS0030086' => 'camsi', 'CSS0031914' => 'camsi', 'CSS0041957' => 'camsi', 'DCAR_001853' => 'dca', 'Dinv01512' => 'din', 'Dinv07412' => 'din', 'Dinv12211' => 'din', 'Dinv13564' => 'din', 'Dinv16725' => 'din', 'Dinv24141' => 'din', 'Dinv30053' => 'din', 'Dinv35287' => 'din', 'Dinv36955' => 'din', 'Dinv43849' => 'din', 'Dinv44875' => 'din', 'Duzib052G0188' => 'dzi', 'Duzib052G1175' => 'dzi', 'Duzib132G0972' => 'dzi', 'Duzib248G1145' => 'dzi', 'ECA234G1117' => 'eca', 'ECA236G3977' => 'eca', 'Eucgr.I02610' => 'egr', 'FAN15G1019' => 'fan', 'FAN15G3528' => 'fan', 'FAN20G0126' => 'fan', 'FAN24G0333' => 'fan', 'FAN24G2949' => 'fan', 'FAN27G0918' => 'fan', 'FvH4_2g11490' => 'fve', 'FvH4_2g11500' => 'fve', 'Glyma.07G183000' => 'gma', 'Glyma.08G067000' => 'gma', 'Glyma.13G256000' => 'gma', 'Gohir.A03G177800' => 'ghi', 'Gohir.A06G031100' => 'ghi', 'Gohir.A13G050200' => 'ghi', 'Gohir.D02G201500' => 'ghi', 'Gohir.D06G030300' => 'ghi', 'Gohir.D13G048866' => 'ghi', 'Gohir.D13G049000' => 'ghi', 'Gorai.005G226300' => 'gra', 'Gorai.010G033300' => 'gra', 'Gorai.013G054700' => 'gra', 'GSVIVG01009202001' => 'vvi', 'GSVIVG01012539001' => 'vvi', 'HanXRQChr10g0297741' => 'han', 'HanXRQChr16g0514501' => 'han', 'Haze_10488' => 'cav', 'Haze_10491' => 'cav', 'Haze_22486' => 'cav', 'Hma1.2p1_0010F.1_g006520' => 'hma', 'Hma1.2p1_0369F.1_g137460' => 'hma', 'Hma1.2p1_0908F.1_g235530' => 'hma', 'Hma1.2p1_0908F.1_g235540' => 'hma', 'Hma1.2p1_2737F.1_g327682' => 'hma', 'Hma1.2p1_2737F.1_g327684' => 'hma', 'HPP92_017790' => 'vpl', 'HPP92_018832' => 'vpl', 'HPP92_019595' => 'vpl', 'Hund16518' => 'sun', 'Hund31122' => 'sun', 'Hund31123' => 'sun', 'Lalb_Chr05g0217911' => 'lal', 'Lalb_Chr09g0326941' => 'lal', 'Lalb_Chr16g0383001' => 'lal', 'Lj4g0012171' => 'lja', 'Lj9C347G10' => 'lonja', 'Lsat_1_v5_gn_3_1880' => 'lsa', 'Lsat_1_v5_gn_5_110320' => 'lsa', 'Lsat_1_v5_gn_5_120701' => 'lsa', 'Lsat_1_v5_gn_7_83541' => 'lsa', 'Lsat_1_v5_gn_8_96061' => 'lsa', 'Manes.07G041000' => 'mes', 'Manes.18G056800' => 'mes', 'Mapoly0071s0096' => 'mpo', 'Mapoly0137s0002' => 'mpo', 'MBI16_g30313_MAGBIO' => 'mbi', 'MCO10G279' => 'mco', 'MCO11G598' => 'mco', 'MD05G1048900' => 'mdo', 'MD08G1245600' => 'mdo', 'Medtr2g009700' => 'mtr', 'Medtr2g009710' => 'mtr', 'Medtr4g093770' => 'mtr', 'MELO3C011073.2' => 'cme', 'Migut.B00539' => 'egut', 'Migut.N01102' => 'egut', 'Migut.N01104' => 'egut', 'Migut.N01105' => 'egut', 'MSTRG.16624' => 'ama', 'MSTRG.20275' => 'ama', 'MSTRG.27818' => 'ama', 'MSTRG.5290' => 'ama', 'Nitab4.5_0001259g0060' => 'nta', 'Nitab4.5_0001259g0070' => 'nta', 'Nitab4.5_0005861g0010' => 'nta', 'Nitab4.5_0009446g0030' => 'nta', 'Nitab4.5_0022581g0010' => 'nta', 'Nitab4.5_0027918g0010' => 'nta', 'Nn1g05628' => 'nnu', 'Nn1g05629' => 'nnu', 'Nn5g29830' => 'nnu', 'Nn7g36725' => 'nnu', 'Oeu038173.1' => 'oeu', 'Oeu040882.1' => 'oeu', 'Oeu059900.1' => 'oeu', 'Oeu063548.1' => 'oeu', 'Os03g0685500' => 'osa', 'Os12g0637900' => 'osa', 'Peaxi162Scf00003g03238' => 'pax', 'Peaxi162Scf00152g00827' => 'pax', 'PGR042G0810' => 'pgr', 'PGR042G3069' => 'pgr', 'PGR102G2622' => 'pgr', 'PGR142G1682' => 'pgr', 'PGSC0003DMG400009350' => 'stu', 'PGSC0003DMG400029016' => 'stu', 'Phvul.002G214000' => 'pvu', 'Phvul.006G201300' => 'pvu', 'Potri.001G282900' => 'ptr', 'Potri.009G078100' => 'ptr', 'Pp3c14_20840' => 'ppa', 'Pp3c1_2010' => 'ppa', 'Pp3c2_30940' => 'ppa', 'Pp3c7_22902' => 'ppa', 'PRCOL_00000947' => 'pco', 'Prupe.8G071500' => 'ppe', 'Psat5g245800' => 'psa', 'Psat7g101640' => 'psa', 'PSO170G0844' => 'pso', 'PSO170G5084' => 'pso', 'PSO210G7313' => 'pso', 'QL09p018381' => 'qlo', 'QL09p018387' => 'qlo', 'QL11p025715' => 'qlo', 'QL12p040898' => 'qlo', 'RcHm_v2.0_Chr6g0270231' => 'rch', 'RcHm_v2.0_Chr6g0270481' => 'rch', 'Rhsim05G0100900' => 'rsi', 'Rhsim07G0213100' => 'rsi', 'Rhsim11G0141600' => 'rsi', 'Sabra09G0059800' => 'sbr', 'Sabra16G0176100' => 'sbr', 'SalBow1G0635' => 'sbo', 'SalBow1G4314' => 'sbo', 'SalBow6G0381' => 'sbo', 'SalBow6G2032' => 'sbo', 'SalBow6G4961' => 'sbo', 'Sc16g0000640' => 'sci', 'Sed0004611' => 'sed', 'Sed0026496' => 'sed', 'SGA_v2.0_scaffold32G12933' => 'sas', 'SGA_v2.0_scaffold337G49170' => 'sas', 'SMO147G0066' => 'smo', 'SMO239G0190' => 'smo', 'SMO361G0099' => 'smo', 'SMO361G0435' => 'smo', 'SMO364G0085' => 'smo', 'Solyc04g076600.3' => 'sly', 'Solyc10g047650.3' => 'sly', 'Solyc10g047660.1' => 'sly', 'Sopen00g012000' => 'spe', 'Sopen04g030330' => 'spe', 'Sopen10g018060' => 'spe', 'Sopen10g018070' => 'spe', 'Sp2g27490' => 'spa', 'TAR381G1072' => 'tar', 'TAR625G1276' => 'tar', 'TAR628G0637' => 'tar', 'TAR628G0781' => 'tar', 'THA.LOC104819323' => 'tha', 'Thecc.02G127700' => 'tca', 'Thecc.08G073500' => 'tca', 'Thhalv10005092m.g' => 'esa', 'Thhalv10014959m.g' => 'esa', 'Thhalv10019238m.g' => 'esa', 'TPR.G27436' => 'tpr', 'TPR.G2882' => 'tpr', 'TWI14G0247' => 'twi', 'TWI59G0391' => 'twi', 'TWI59G1057' => 'twi', 'unitig_899.g15644' => 'ugi', 'vmacro01869' => 'vma', 'vmacro04639' => 'vma', 'vmacro13022' => 'vma', 'vmacro19606' => 'vma', 'VMungo0251G1961' => 'vmu', 'Zm00001eb032240' => 'zma', 'Zm00001eb053320' => 'zma', 'Zm00001eb053330' => 'zma', 'Zm00001eb100030' => 'zma', 'Zm00001eb109070' => 'zma', 'Zm00001eb217210' => 'zma', 'Zm00001eb220290' => 'zma', 'Zm00001eb238990' => 'zma', 'Zm00001eb245660' => 'zma', 'Zm00001eb254000' => 'zma', 'Zm00001eb321480' => 'zma', 'Zm00001eb332280' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002425' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002425' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002425' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002425' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002425', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '279', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p16190' => 'bna', 'A06p31070' => 'bna', 'A09p08660' => 'bna', 'A10p20170' => 'bna', 'A10p27760' => 'bna', 'Aa31LG1G17500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5571' => 'aag', 'Actinidia04553' => 'ach', 'Actinidia19619' => 'ach', 'Actinidia28023' => 'ach', 'Actinidia29337' => 'ach', 'Ah.02g123430' => 'amhyb', 'Ah.03g143270' => 'amhyb', 'AL22U10130' => 'aly', 'AL6G19970' => 'aly', 'AL8G41760' => 'aly', 'Aqoxy5G01352' => 'aox', 'Aqoxy6G00822' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68LHHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3LE3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F22E5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XH6SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4VPDJ' => 'arhy', 'AT5G09570' => 'ath', 'AT5G64400' => 'ath', 'ATR0767G013' => 'atr', 'Atru.chr6.1302' => 'acertr', 'AUR62003687' => 'cqu', 'AUR62017999' => 'cqu', 'AUR62043607' => 'cqu', 'BcaB04g19969' => 'bca', 'BcaB05g24496' => 'bca', 'BcaB08g37197' => 'bca', 'BcaC03g13262' => 'bca', 'BcaC03g15136' => 'bca', 'BcaC03g17508' => 'bca', 'BcaC04g23319' => 'bca', 'BolC2t06355H' => 'bol', 'BolC2t08762H' => 'bol', 'BolC3t18447H' => 'bol', 'BolC9t53888H' => 'bol', 'BolC9t59547H' => 'bol', 'BraA02t06679Z' => 'bra', 'BraA06t26050Z' => 'bra', 'BraA09t36515Z' => 'bra', 'BraA10t44827Z' => 'bra', 'C02p26990' => 'bna', 'C03p23370' => 'bna', 'C03p61870' => 'bna', 'C09p09770' => 'bna', 'C09p67870' => 'bna', 'CAN.G162.4' => 'can', 'CAN.G74.13' => 'can', 'CAN.G74.15' => 'can', 'CANSAT54G1313' => 'cansat', 'CARHR203820' => 'chi', 'CARHR278350' => 'chi', 'Carub.0002s1655' => 'cru', 'Carub.0008s2520' => 'cru', 'Ca_18393_v3' => 'car', 'CBR_g23843' => 'cbr', 'Cc02_g20770' => 'ccan', 'Cc10_g08540' => 'ccan', 'CDE04G1856' => 'cde', 'CDE07G0186' => 'cde', 'Ciclev10002776m.g' => 'ccl', 'Ciclev10029537m.g' => 'ccl', 'CiPaw.05G028600' => 'cil', 'CiPaw.06G158800' => 'cil', 'CiPaw.07G163300' => 'cil', 'ClCG08G011560' => 'cla', 'COL.COLO4_32410' => 'col', 'COL.COLO4_34249' => 'col', 'COL.COLO4_35273' => 'col', 'Cpa.g.sc1556.2' => 'cpa', 'Cpa.g.sc20.24' => 'cpa', 'Cre02.g146700' => 'cre', 'CsaV3_2G030140' => 'csa', 'CSS0000895' => 'camsi', 'CSS0029614' => 'camsi', 'CSS0030086' => 'camsi', 'CSS0031914' => 'camsi', 'CSS0041957' => 'camsi', 'DCAR_001853' => 'dca', 'Dinv01512' => 'din', 'Dinv07412' => 'din', 'Dinv12211' => 'din', 'Dinv13564' => 'din', 'Dinv16725' => 'din', 'Dinv24141' => 'din', 'Dinv30053' => 'din', 'Dinv35287' => 'din', 'Dinv36955' => 'din', 'Dinv43849' => 'din', 'Dinv44875' => 'din', 'Duzib052G0188' => 'dzi', 'Duzib052G1175' => 'dzi', 'Duzib132G0972' => 'dzi', 'Duzib248G1145' => 'dzi', 'ECA234G1117' => 'eca', 'ECA236G3977' => 'eca', 'Eucgr.I02610' => 'egr', 'FAN15G1019' => 'fan', 'FAN15G3528' => 'fan', 'FAN20G0126' => 'fan', 'FAN24G0333' => 'fan', 'FAN24G2949' => 'fan', 'FAN27G0918' => 'fan', 'FvH4_2g11490' => 'fve', 'FvH4_2g11500' => 'fve', 'Glyma.07G183000' => 'gma', 'Glyma.08G067000' => 'gma', 'Glyma.13G256000' => 'gma', 'Gohir.A03G177800' => 'ghi', 'Gohir.A06G031100' => 'ghi', 'Gohir.A13G050200' => 'ghi', 'Gohir.D02G201500' => 'ghi', 'Gohir.D06G030300' => 'ghi', 'Gohir.D13G048866' => 'ghi', 'Gohir.D13G049000' => 'ghi', 'Gorai.005G226300' => 'gra', 'Gorai.010G033300' => 'gra', 'Gorai.013G054700' => 'gra', 'GSVIVG01009202001' => 'vvi', 'GSVIVG01012539001' => 'vvi', 'HanXRQChr10g0297741' => 'han', 'HanXRQChr16g0514501' => 'han', 'Haze_10488' => 'cav', 'Haze_10491' => 'cav', 'Haze_22486' => 'cav', 'Hma1.2p1_0010F.1_g006520' => 'hma', 'Hma1.2p1_0369F.1_g137460' => 'hma', 'Hma1.2p1_0908F.1_g235530' => 'hma', 'Hma1.2p1_0908F.1_g235540' => 'hma', 'Hma1.2p1_2737F.1_g327682' => 'hma', 'Hma1.2p1_2737F.1_g327684' => 'hma', 'HPP92_017790' => 'vpl', 'HPP92_018832' => 'vpl', 'HPP92_019595' => 'vpl', 'Hund16518' => 'sun', 'Hund31122' => 'sun', 'Hund31123' => 'sun', 'Lalb_Chr05g0217911' => 'lal', 'Lalb_Chr09g0326941' => 'lal', 'Lalb_Chr16g0383001' => 'lal', 'Lj4g0012171' => 'lja', 'Lj9C347G10' => 'lonja', 'Lsat_1_v5_gn_3_1880' => 'lsa', 'Lsat_1_v5_gn_5_110320' => 'lsa', 'Lsat_1_v5_gn_5_120701' => 'lsa', 'Lsat_1_v5_gn_7_83541' => 'lsa', 'Lsat_1_v5_gn_8_96061' => 'lsa', 'Manes.07G041000' => 'mes', 'Manes.18G056800' => 'mes', 'Mapoly0071s0096' => 'mpo', 'Mapoly0137s0002' => 'mpo', 'MBI16_g30313_MAGBIO' => 'mbi', 'MCO10G279' => 'mco', 'MCO11G598' => 'mco', 'MD05G1048900' => 'mdo', 'MD08G1245600' => 'mdo', 'Medtr2g009700' => 'mtr', 'Medtr2g009710' => 'mtr', 'Medtr4g093770' => 'mtr', 'MELO3C011073.2' => 'cme', 'Migut.B00539' => 'egut', 'Migut.N01102' => 'egut', 'Migut.N01104' => 'egut', 'Migut.N01105' => 'egut', 'MSTRG.16624' => 'ama', 'MSTRG.20275' => 'ama', 'MSTRG.27818' => 'ama', 'MSTRG.5290' => 'ama', 'Nitab4.5_0001259g0060' => 'nta', 'Nitab4.5_0001259g0070' => 'nta', 'Nitab4.5_0005861g0010' => 'nta', 'Nitab4.5_0009446g0030' => 'nta', 'Nitab4.5_0022581g0010' => 'nta', 'Nitab4.5_0027918g0010' => 'nta', 'Nn1g05628' => 'nnu', 'Nn1g05629' => 'nnu', 'Nn5g29830' => 'nnu', 'Nn7g36725' => 'nnu', 'Oeu038173.1' => 'oeu', 'Oeu040882.1' => 'oeu', 'Oeu059900.1' => 'oeu', 'Oeu063548.1' => 'oeu', 'Os03g0685500' => 'osa', 'Os12g0637900' => 'osa', 'Peaxi162Scf00003g03238' => 'pax', 'Peaxi162Scf00152g00827' => 'pax', 'PGR042G0810' => 'pgr', 'PGR042G3069' => 'pgr', 'PGR102G2622' => 'pgr', 'PGR142G1682' => 'pgr', 'PGSC0003DMG400009350' => 'stu', 'PGSC0003DMG400029016' => 'stu', 'Phvul.002G214000' => 'pvu', 'Phvul.006G201300' => 'pvu', 'Potri.001G282900' => 'ptr', 'Potri.009G078100' => 'ptr', 'Pp3c14_20840' => 'ppa', 'Pp3c1_2010' => 'ppa', 'Pp3c2_30940' => 'ppa', 'Pp3c7_22902' => 'ppa', 'PRCOL_00000947' => 'pco', 'Prupe.8G071500' => 'ppe', 'Psat5g245800' => 'psa', 'Psat7g101640' => 'psa', 'PSO170G0844' => 'pso', 'PSO170G5084' => 'pso', 'PSO210G7313' => 'pso', 'QL09p018381' => 'qlo', 'QL09p018387' => 'qlo', 'QL11p025715' => 'qlo', 'QL12p040898' => 'qlo', 'RcHm_v2.0_Chr6g0270231' => 'rch', 'RcHm_v2.0_Chr6g0270481' => 'rch', 'Rhsim05G0100900' => 'rsi', 'Rhsim07G0213100' => 'rsi', 'Rhsim11G0141600' => 'rsi', 'Sabra09G0059800' => 'sbr', 'Sabra16G0176100' => 'sbr', 'SalBow1G0635' => 'sbo', 'SalBow1G4314' => 'sbo', 'SalBow6G0381' => 'sbo', 'SalBow6G2032' => 'sbo', 'SalBow6G4961' => 'sbo', 'Sc16g0000640' => 'sci', 'Sed0004611' => 'sed', 'Sed0026496' => 'sed', 'SGA_v2.0_scaffold32G12933' => 'sas', 'SGA_v2.0_scaffold337G49170' => 'sas', 'SMO147G0066' => 'smo', 'SMO239G0190' => 'smo', 'SMO361G0099' => 'smo', 'SMO361G0435' => 'smo', 'SMO364G0085' => 'smo', 'Solyc04g076600.3' => 'sly', 'Solyc10g047650.3' => 'sly', 'Solyc10g047660.1' => 'sly', 'Sopen00g012000' => 'spe', 'Sopen04g030330' => 'spe', 'Sopen10g018060' => 'spe', 'Sopen10g018070' => 'spe', 'Sp2g27490' => 'spa', 'TAR381G1072' => 'tar', 'TAR625G1276' => 'tar', 'TAR628G0637' => 'tar', 'TAR628G0781' => 'tar', 'THA.LOC104819323' => 'tha', 'Thecc.02G127700' => 'tca', 'Thecc.08G073500' => 'tca', 'Thhalv10005092m.g' => 'esa', 'Thhalv10014959m.g' => 'esa', 'Thhalv10019238m.g' => 'esa', 'TPR.G27436' => 'tpr', 'TPR.G2882' => 'tpr', 'TWI14G0247' => 'twi', 'TWI59G0391' => 'twi', 'TWI59G1057' => 'twi', 'unitig_899.g15644' => 'ugi', 'vmacro01869' => 'vma', 'vmacro04639' => 'vma', 'vmacro13022' => 'vma', 'vmacro19606' => 'vma', 'VMungo0251G1961' => 'vmu', 'Zm00001eb032240' => 'zma', 'Zm00001eb053320' => 'zma', 'Zm00001eb053330' => 'zma', 'Zm00001eb100030' => 'zma', 'Zm00001eb109070' => 'zma', 'Zm00001eb217210' => 'zma', 'Zm00001eb220290' => 'zma', 'Zm00001eb238990' => 'zma', 'Zm00001eb245660' => 'zma', 'Zm00001eb254000' => 'zma', 'Zm00001eb321480' => 'zma', 'Zm00001eb332280' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002425', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002425' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002425', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '279', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002425' ) ), 'genes' => array( 'A02p16190' => 'bna', 'A06p31070' => 'bna', 'A09p08660' => 'bna', 'A10p20170' => 'bna', 'A10p27760' => 'bna', 'Aa31LG1G17500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5571' => 'aag', 'Actinidia04553' => 'ach', 'Actinidia19619' => 'ach', 'Actinidia28023' => 'ach', 'Actinidia29337' => 'ach', 'Ah.02g123430' => 'amhyb', 'Ah.03g143270' => 'amhyb', 'AL22U10130' => 'aly', 'AL6G19970' => 'aly', 'AL8G41760' => 'aly', 'Aqoxy5G01352' => 'aox', 'Aqoxy6G00822' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68LHHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3LE3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F22E5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XH6SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4VPDJ' => 'arhy', 'AT5G09570' => 'ath', 'AT5G64400' => 'ath', 'ATR0767G013' => 'atr', 'Atru.chr6.1302' => 'acertr', 'AUR62003687' => 'cqu', 'AUR62017999' => 'cqu', 'AUR62043607' => 'cqu', 'BcaB04g19969' => 'bca', 'BcaB05g24496' => 'bca', 'BcaB08g37197' => 'bca', 'BcaC03g13262' => 'bca', 'BcaC03g15136' => 'bca', 'BcaC03g17508' => 'bca', 'BcaC04g23319' => 'bca', 'BolC2t06355H' => 'bol', 'BolC2t08762H' => 'bol', 'BolC3t18447H' => 'bol', 'BolC9t53888H' => 'bol', 'BolC9t59547H' => 'bol', 'BraA02t06679Z' => 'bra', 'BraA06t26050Z' => 'bra', 'BraA09t36515Z' => 'bra', 'BraA10t44827Z' => 'bra', 'C02p26990' => 'bna', 'C03p23370' => 'bna', 'C03p61870' => 'bna', 'C09p09770' => 'bna', 'C09p67870' => 'bna', 'CAN.G162.4' => 'can', 'CAN.G74.13' => 'can', 'CAN.G74.15' => 'can', 'CANSAT54G1313' => 'cansat', 'CARHR203820' => 'chi', 'CARHR278350' => 'chi', 'Carub.0002s1655' => 'cru', 'Carub.0008s2520' => 'cru', 'Ca_18393_v3' => 'car', 'CBR_g23843' => 'cbr', 'Cc02_g20770' => 'ccan', 'Cc10_g08540' => 'ccan', 'CDE04G1856' => 'cde', 'CDE07G0186' => 'cde', 'Ciclev10002776m.g' => 'ccl', 'Ciclev10029537m.g' => 'ccl', 'CiPaw.05G028600' => 'cil', 'CiPaw.06G158800' => 'cil', 'CiPaw.07G163300' => 'cil', 'ClCG08G011560' => 'cla', 'COL.COLO4_32410' => 'col', 'COL.COLO4_34249' => 'col', 'COL.COLO4_35273' => 'col', 'Cpa.g.sc1556.2' => 'cpa', 'Cpa.g.sc20.24' => 'cpa', 'Cre02.g146700' => 'cre', 'CsaV3_2G030140' => 'csa', 'CSS0000895' => 'camsi', 'CSS0029614' => 'camsi', 'CSS0030086' => 'camsi', 'CSS0031914' => 'camsi', 'CSS0041957' => 'camsi', 'DCAR_001853' => 'dca', 'Dinv01512' => 'din', 'Dinv07412' => 'din', 'Dinv12211' => 'din', 'Dinv13564' => 'din', 'Dinv16725' => 'din', 'Dinv24141' => 'din', 'Dinv30053' => 'din', 'Dinv35287' => 'din', 'Dinv36955' => 'din', 'Dinv43849' => 'din', 'Dinv44875' => 'din', 'Duzib052G0188' => 'dzi', 'Duzib052G1175' => 'dzi', 'Duzib132G0972' => 'dzi', 'Duzib248G1145' => 'dzi', 'ECA234G1117' => 'eca', 'ECA236G3977' => 'eca', 'Eucgr.I02610' => 'egr', 'FAN15G1019' => 'fan', 'FAN15G3528' => 'fan', 'FAN20G0126' => 'fan', 'FAN24G0333' => 'fan', 'FAN24G2949' => 'fan', 'FAN27G0918' => 'fan', 'FvH4_2g11490' => 'fve', 'FvH4_2g11500' => 'fve', 'Glyma.07G183000' => 'gma', 'Glyma.08G067000' => 'gma', 'Glyma.13G256000' => 'gma', 'Gohir.A03G177800' => 'ghi', 'Gohir.A06G031100' => 'ghi', 'Gohir.A13G050200' => 'ghi', 'Gohir.D02G201500' => 'ghi', 'Gohir.D06G030300' => 'ghi', 'Gohir.D13G048866' => 'ghi', 'Gohir.D13G049000' => 'ghi', 'Gorai.005G226300' => 'gra', 'Gorai.010G033300' => 'gra', 'Gorai.013G054700' => 'gra', 'GSVIVG01009202001' => 'vvi', 'GSVIVG01012539001' => 'vvi', 'HanXRQChr10g0297741' => 'han', 'HanXRQChr16g0514501' => 'han', 'Haze_10488' => 'cav', 'Haze_10491' => 'cav', 'Haze_22486' => 'cav', 'Hma1.2p1_0010F.1_g006520' => 'hma', 'Hma1.2p1_0369F.1_g137460' => 'hma', 'Hma1.2p1_0908F.1_g235530' => 'hma', 'Hma1.2p1_0908F.1_g235540' => 'hma', 'Hma1.2p1_2737F.1_g327682' => 'hma', 'Hma1.2p1_2737F.1_g327684' => 'hma', 'HPP92_017790' => 'vpl', 'HPP92_018832' => 'vpl', 'HPP92_019595' => 'vpl', 'Hund16518' => 'sun', 'Hund31122' => 'sun', 'Hund31123' => 'sun', 'Lalb_Chr05g0217911' => 'lal', 'Lalb_Chr09g0326941' => 'lal', 'Lalb_Chr16g0383001' => 'lal', 'Lj4g0012171' => 'lja', 'Lj9C347G10' => 'lonja', 'Lsat_1_v5_gn_3_1880' => 'lsa', 'Lsat_1_v5_gn_5_110320' => 'lsa', 'Lsat_1_v5_gn_5_120701' => 'lsa', 'Lsat_1_v5_gn_7_83541' => 'lsa', 'Lsat_1_v5_gn_8_96061' => 'lsa', 'Manes.07G041000' => 'mes', 'Manes.18G056800' => 'mes', 'Mapoly0071s0096' => 'mpo', 'Mapoly0137s0002' => 'mpo', 'MBI16_g30313_MAGBIO' => 'mbi', 'MCO10G279' => 'mco', 'MCO11G598' => 'mco', 'MD05G1048900' => 'mdo', 'MD08G1245600' => 'mdo', 'Medtr2g009700' => 'mtr', 'Medtr2g009710' => 'mtr', 'Medtr4g093770' => 'mtr', 'MELO3C011073.2' => 'cme', 'Migut.B00539' => 'egut', 'Migut.N01102' => 'egut', 'Migut.N01104' => 'egut', 'Migut.N01105' => 'egut', 'MSTRG.16624' => 'ama', 'MSTRG.20275' => 'ama', 'MSTRG.27818' => 'ama', 'MSTRG.5290' => 'ama', 'Nitab4.5_0001259g0060' => 'nta', 'Nitab4.5_0001259g0070' => 'nta', 'Nitab4.5_0005861g0010' => 'nta', 'Nitab4.5_0009446g0030' => 'nta', 'Nitab4.5_0022581g0010' => 'nta', 'Nitab4.5_0027918g0010' => 'nta', 'Nn1g05628' => 'nnu', 'Nn1g05629' => 'nnu', 'Nn5g29830' => 'nnu', 'Nn7g36725' => 'nnu', 'Oeu038173.1' => 'oeu', 'Oeu040882.1' => 'oeu', 'Oeu059900.1' => 'oeu', 'Oeu063548.1' => 'oeu', 'Os03g0685500' => 'osa', 'Os12g0637900' => 'osa', 'Peaxi162Scf00003g03238' => 'pax', 'Peaxi162Scf00152g00827' => 'pax', 'PGR042G0810' => 'pgr', 'PGR042G3069' => 'pgr', 'PGR102G2622' => 'pgr', 'PGR142G1682' => 'pgr', 'PGSC0003DMG400009350' => 'stu', 'PGSC0003DMG400029016' => 'stu', 'Phvul.002G214000' => 'pvu', 'Phvul.006G201300' => 'pvu', 'Potri.001G282900' => 'ptr', 'Potri.009G078100' => 'ptr', 'Pp3c14_20840' => 'ppa', 'Pp3c1_2010' => 'ppa', 'Pp3c2_30940' => 'ppa', 'Pp3c7_22902' => 'ppa', 'PRCOL_00000947' => 'pco', 'Prupe.8G071500' => 'ppe', 'Psat5g245800' => 'psa', 'Psat7g101640' => 'psa', 'PSO170G0844' => 'pso', 'PSO170G5084' => 'pso', 'PSO210G7313' => 'pso', 'QL09p018381' => 'qlo', 'QL09p018387' => 'qlo', 'QL11p025715' => 'qlo', 'QL12p040898' => 'qlo', 'RcHm_v2.0_Chr6g0270231' => 'rch', 'RcHm_v2.0_Chr6g0270481' => 'rch', 'Rhsim05G0100900' => 'rsi', 'Rhsim07G0213100' => 'rsi', 'Rhsim11G0141600' => 'rsi', 'Sabra09G0059800' => 'sbr', 'Sabra16G0176100' => 'sbr', 'SalBow1G0635' => 'sbo', 'SalBow1G4314' => 'sbo', 'SalBow6G0381' => 'sbo', 'SalBow6G2032' => 'sbo', 'SalBow6G4961' => 'sbo', 'Sc16g0000640' => 'sci', 'Sed0004611' => 'sed', 'Sed0026496' => 'sed', 'SGA_v2.0_scaffold32G12933' => 'sas', 'SGA_v2.0_scaffold337G49170' => 'sas', 'SMO147G0066' => 'smo', 'SMO239G0190' => 'smo', 'SMO361G0099' => 'smo', 'SMO361G0435' => 'smo', 'SMO364G0085' => 'smo', 'Solyc04g076600.3' => 'sly', 'Solyc10g047650.3' => 'sly', 'Solyc10g047660.1' => 'sly', 'Sopen00g012000' => 'spe', 'Sopen04g030330' => 'spe', 'Sopen10g018060' => 'spe', 'Sopen10g018070' => 'spe', 'Sp2g27490' => 'spa', 'TAR381G1072' => 'tar', 'TAR625G1276' => 'tar', 'TAR628G0637' => 'tar', 'TAR628G0781' => 'tar', 'THA.LOC104819323' => 'tha', 'Thecc.02G127700' => 'tca', 'Thecc.08G073500' => 'tca', 'Thhalv10005092m.g' => 'esa', 'Thhalv10014959m.g' => 'esa', 'Thhalv10019238m.g' => 'esa', 'TPR.G27436' => 'tpr', 'TPR.G2882' => 'tpr', 'TWI14G0247' => 'twi', 'TWI59G0391' => 'twi', 'TWI59G1057' => 'twi', 'unitig_899.g15644' => 'ugi', 'vmacro01869' => 'vma', 'vmacro04639' => 'vma', 'vmacro13022' => 'vma', 'vmacro19606' => 'vma', 'VMungo0251G1961' => 'vmu', 'Zm00001eb032240' => 'zma', 'Zm00001eb053320' => 'zma', 'Zm00001eb053330' => 'zma', 'Zm00001eb100030' => 'zma', 'Zm00001eb109070' => 'zma', 'Zm00001eb217210' => 'zma', 'Zm00001eb220290' => 'zma', 'Zm00001eb238990' => 'zma', 'Zm00001eb245660' => 'zma', 'Zm00001eb254000' => 'zma', 'Zm00001eb321480' => 'zma', 'Zm00001eb332280' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002425' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002425' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002425' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002425' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002425', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '279', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A02p16190' => 'bna', 'A06p31070' => 'bna', 'A09p08660' => 'bna', 'A10p20170' => 'bna', 'A10p27760' => 'bna', 'Aa31LG1G17500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5571' => 'aag', 'Actinidia04553' => 'ach', 'Actinidia19619' => 'ach', 'Actinidia28023' => 'ach', 'Actinidia29337' => 'ach', 'Ah.02g123430' => 'amhyb', 'Ah.03g143270' => 'amhyb', 'AL22U10130' => 'aly', 'AL6G19970' => 'aly', 'AL8G41760' => 'aly', 'Aqoxy5G01352' => 'aox', 'Aqoxy6G00822' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68LHHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3LE3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F22E5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XH6SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4VPDJ' => 'arhy', 'AT5G09570' => 'ath', 'AT5G64400' => 'ath', 'ATR0767G013' => 'atr', 'Atru.chr6.1302' => 'acertr', 'AUR62003687' => 'cqu', 'AUR62017999' => 'cqu', 'AUR62043607' => 'cqu', 'BcaB04g19969' => 'bca', 'BcaB05g24496' => 'bca', 'BcaB08g37197' => 'bca', 'BcaC03g13262' => 'bca', 'BcaC03g15136' => 'bca', 'BcaC03g17508' => 'bca', 'BcaC04g23319' => 'bca', 'BolC2t06355H' => 'bol', 'BolC2t08762H' => 'bol', 'BolC3t18447H' => 'bol', 'BolC9t53888H' => 'bol', 'BolC9t59547H' => 'bol', 'BraA02t06679Z' => 'bra', 'BraA06t26050Z' => 'bra', 'BraA09t36515Z' => 'bra', 'BraA10t44827Z' => 'bra', 'C02p26990' => 'bna', 'C03p23370' => 'bna', 'C03p61870' => 'bna', 'C09p09770' => 'bna', 'C09p67870' => 'bna', 'CAN.G162.4' => 'can', 'CAN.G74.13' => 'can', 'CAN.G74.15' => 'can', 'CANSAT54G1313' => 'cansat', 'CARHR203820' => 'chi', 'CARHR278350' => 'chi', 'Carub.0002s1655' => 'cru', 'Carub.0008s2520' => 'cru', 'Ca_18393_v3' => 'car', 'CBR_g23843' => 'cbr', 'Cc02_g20770' => 'ccan', 'Cc10_g08540' => 'ccan', 'CDE04G1856' => 'cde', 'CDE07G0186' => 'cde', 'Ciclev10002776m.g' => 'ccl', 'Ciclev10029537m.g' => 'ccl', 'CiPaw.05G028600' => 'cil', 'CiPaw.06G158800' => 'cil', 'CiPaw.07G163300' => 'cil', 'ClCG08G011560' => 'cla', 'COL.COLO4_32410' => 'col', 'COL.COLO4_34249' => 'col', 'COL.COLO4_35273' => 'col', 'Cpa.g.sc1556.2' => 'cpa', 'Cpa.g.sc20.24' => 'cpa', 'Cre02.g146700' => 'cre', 'CsaV3_2G030140' => 'csa', 'CSS0000895' => 'camsi', 'CSS0029614' => 'camsi', 'CSS0030086' => 'camsi', 'CSS0031914' => 'camsi', 'CSS0041957' => 'camsi', 'DCAR_001853' => 'dca', 'Dinv01512' => 'din', 'Dinv07412' => 'din', 'Dinv12211' => 'din', 'Dinv13564' => 'din', 'Dinv16725' => 'din', 'Dinv24141' => 'din', 'Dinv30053' => 'din', 'Dinv35287' => 'din', 'Dinv36955' => 'din', 'Dinv43849' => 'din', 'Dinv44875' => 'din', 'Duzib052G0188' => 'dzi', 'Duzib052G1175' => 'dzi', 'Duzib132G0972' => 'dzi', 'Duzib248G1145' => 'dzi', 'ECA234G1117' => 'eca', 'ECA236G3977' => 'eca', 'Eucgr.I02610' => 'egr', 'FAN15G1019' => 'fan', 'FAN15G3528' => 'fan', 'FAN20G0126' => 'fan', 'FAN24G0333' => 'fan', 'FAN24G2949' => 'fan', 'FAN27G0918' => 'fan', 'FvH4_2g11490' => 'fve', 'FvH4_2g11500' => 'fve', 'Glyma.07G183000' => 'gma', 'Glyma.08G067000' => 'gma', 'Glyma.13G256000' => 'gma', 'Gohir.A03G177800' => 'ghi', 'Gohir.A06G031100' => 'ghi', 'Gohir.A13G050200' => 'ghi', 'Gohir.D02G201500' => 'ghi', 'Gohir.D06G030300' => 'ghi', 'Gohir.D13G048866' => 'ghi', 'Gohir.D13G049000' => 'ghi', 'Gorai.005G226300' => 'gra', 'Gorai.010G033300' => 'gra', 'Gorai.013G054700' => 'gra', 'GSVIVG01009202001' => 'vvi', 'GSVIVG01012539001' => 'vvi', 'HanXRQChr10g0297741' => 'han', 'HanXRQChr16g0514501' => 'han', 'Haze_10488' => 'cav', 'Haze_10491' => 'cav', 'Haze_22486' => 'cav', 'Hma1.2p1_0010F.1_g006520' => 'hma', 'Hma1.2p1_0369F.1_g137460' => 'hma', 'Hma1.2p1_0908F.1_g235530' => 'hma', 'Hma1.2p1_0908F.1_g235540' => 'hma', 'Hma1.2p1_2737F.1_g327682' => 'hma', 'Hma1.2p1_2737F.1_g327684' => 'hma', 'HPP92_017790' => 'vpl', 'HPP92_018832' => 'vpl', 'HPP92_019595' => 'vpl', 'Hund16518' => 'sun', 'Hund31122' => 'sun', 'Hund31123' => 'sun', 'Lalb_Chr05g0217911' => 'lal', 'Lalb_Chr09g0326941' => 'lal', 'Lalb_Chr16g0383001' => 'lal', 'Lj4g0012171' => 'lja', 'Lj9C347G10' => 'lonja', 'Lsat_1_v5_gn_3_1880' => 'lsa', 'Lsat_1_v5_gn_5_110320' => 'lsa', 'Lsat_1_v5_gn_5_120701' => 'lsa', 'Lsat_1_v5_gn_7_83541' => 'lsa', 'Lsat_1_v5_gn_8_96061' => 'lsa', 'Manes.07G041000' => 'mes', 'Manes.18G056800' => 'mes', 'Mapoly0071s0096' => 'mpo', 'Mapoly0137s0002' => 'mpo', 'MBI16_g30313_MAGBIO' => 'mbi', 'MCO10G279' => 'mco', 'MCO11G598' => 'mco', 'MD05G1048900' => 'mdo', 'MD08G1245600' => 'mdo', 'Medtr2g009700' => 'mtr', 'Medtr2g009710' => 'mtr', 'Medtr4g093770' => 'mtr', 'MELO3C011073.2' => 'cme', 'Migut.B00539' => 'egut', 'Migut.N01102' => 'egut', 'Migut.N01104' => 'egut', 'Migut.N01105' => 'egut', 'MSTRG.16624' => 'ama', 'MSTRG.20275' => 'ama', 'MSTRG.27818' => 'ama', 'MSTRG.5290' => 'ama', 'Nitab4.5_0001259g0060' => 'nta', 'Nitab4.5_0001259g0070' => 'nta', 'Nitab4.5_0005861g0010' => 'nta', 'Nitab4.5_0009446g0030' => 'nta', 'Nitab4.5_0022581g0010' => 'nta', 'Nitab4.5_0027918g0010' => 'nta', 'Nn1g05628' => 'nnu', 'Nn1g05629' => 'nnu', 'Nn5g29830' => 'nnu', 'Nn7g36725' => 'nnu', 'Oeu038173.1' => 'oeu', 'Oeu040882.1' => 'oeu', 'Oeu059900.1' => 'oeu', 'Oeu063548.1' => 'oeu', 'Os03g0685500' => 'osa', 'Os12g0637900' => 'osa', 'Peaxi162Scf00003g03238' => 'pax', 'Peaxi162Scf00152g00827' => 'pax', 'PGR042G0810' => 'pgr', 'PGR042G3069' => 'pgr', 'PGR102G2622' => 'pgr', 'PGR142G1682' => 'pgr', 'PGSC0003DMG400009350' => 'stu', 'PGSC0003DMG400029016' => 'stu', 'Phvul.002G214000' => 'pvu', 'Phvul.006G201300' => 'pvu', 'Potri.001G282900' => 'ptr', 'Potri.009G078100' => 'ptr', 'Pp3c14_20840' => 'ppa', 'Pp3c1_2010' => 'ppa', 'Pp3c2_30940' => 'ppa', 'Pp3c7_22902' => 'ppa', 'PRCOL_00000947' => 'pco', 'Prupe.8G071500' => 'ppe', 'Psat5g245800' => 'psa', 'Psat7g101640' => 'psa', 'PSO170G0844' => 'pso', 'PSO170G5084' => 'pso', 'PSO210G7313' => 'pso', 'QL09p018381' => 'qlo', 'QL09p018387' => 'qlo', 'QL11p025715' => 'qlo', 'QL12p040898' => 'qlo', 'RcHm_v2.0_Chr6g0270231' => 'rch', 'RcHm_v2.0_Chr6g0270481' => 'rch', 'Rhsim05G0100900' => 'rsi', 'Rhsim07G0213100' => 'rsi', 'Rhsim11G0141600' => 'rsi', 'Sabra09G0059800' => 'sbr', 'Sabra16G0176100' => 'sbr', 'SalBow1G0635' => 'sbo', 'SalBow1G4314' => 'sbo', 'SalBow6G0381' => 'sbo', 'SalBow6G2032' => 'sbo', 'SalBow6G4961' => 'sbo', 'Sc16g0000640' => 'sci', 'Sed0004611' => 'sed', 'Sed0026496' => 'sed', 'SGA_v2.0_scaffold32G12933' => 'sas', 'SGA_v2.0_scaffold337G49170' => 'sas', 'SMO147G0066' => 'smo', 'SMO239G0190' => 'smo', 'SMO361G0099' => 'smo', 'SMO361G0435' => 'smo', 'SMO364G0085' => 'smo', 'Solyc04g076600.3' => 'sly', 'Solyc10g047650.3' => 'sly', 'Solyc10g047660.1' => 'sly', 'Sopen00g012000' => 'spe', 'Sopen04g030330' => 'spe', 'Sopen10g018060' => 'spe', 'Sopen10g018070' => 'spe', 'Sp2g27490' => 'spa', 'TAR381G1072' => 'tar', 'TAR625G1276' => 'tar', 'TAR628G0637' => 'tar', 'TAR628G0781' => 'tar', 'THA.LOC104819323' => 'tha', 'Thecc.02G127700' => 'tca', 'Thecc.08G073500' => 'tca', 'Thhalv10005092m.g' => 'esa', 'Thhalv10014959m.g' => 'esa', 'Thhalv10019238m.g' => 'esa', 'TPR.G27436' => 'tpr', 'TPR.G2882' => 'tpr', 'TWI14G0247' => 'twi', 'TWI59G0391' => 'twi', 'TWI59G1057' => 'twi', 'unitig_899.g15644' => 'ugi', 'vmacro01869' => 'vma', 'vmacro04639' => 'vma', 'vmacro13022' => 'vma', 'vmacro19606' => 'vma', 'VMungo0251G1961' => 'vmu', 'Zm00001eb032240' => 'zma', 'Zm00001eb053320' => 'zma', 'Zm00001eb053330' => 'zma', 'Zm00001eb100030' => 'zma', 'Zm00001eb109070' => 'zma', 'Zm00001eb217210' => 'zma', 'Zm00001eb220290' => 'zma', 'Zm00001eb238990' => 'zma', 'Zm00001eb245660' => 'zma', 'Zm00001eb254000' => 'zma', 'Zm00001eb321480' => 'zma', 'Zm00001eb332280' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002425', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002425' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002425', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '279', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002425' ) ), 'genes' => array( 'A02p16190' => 'bna', 'A06p31070' => 'bna', 'A09p08660' => 'bna', 'A10p20170' => 'bna', 'A10p27760' => 'bna', 'Aa31LG1G17500' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.5571' => 'aag', 'Actinidia04553' => 'ach', 'Actinidia19619' => 'ach', 'Actinidia28023' => 'ach', 'Actinidia29337' => 'ach', 'Ah.02g123430' => 'amhyb', 'Ah.03g143270' => 'amhyb', 'AL22U10130' => 'aly', 'AL6G19970' => 'aly', 'AL8G41760' => 'aly', 'Aqoxy5G01352' => 'aox', 'Aqoxy6G00822' => 'aox', 'arahy.Tifrunner.gnm1.ann1.68LHHN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B3LE3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F22E5V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XH6SHZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4VPDJ' => 'arhy', 'AT5G09570' => 'ath', 'AT5G64400' => 'ath', 'ATR0767G013' => 'atr', 'Atru.chr6.1302' => 'acertr', 'AUR62003687' => 'cqu', 'AUR62017999' => 'cqu', 'AUR62043607' => 'cqu', 'BcaB04g19969' => 'bca', 'BcaB05g24496' => 'bca', 'BcaB08g37197' => 'bca', 'BcaC03g13262' => 'bca', 'BcaC03g15136' => 'bca', 'BcaC03g17508' => 'bca', 'BcaC04g23319' => 'bca', 'BolC2t06355H' => 'bol', 'BolC2t08762H' => 'bol', 'BolC3t18447H' => 'bol', 'BolC9t53888H' => 'bol', 'BolC9t59547H' => 'bol', 'BraA02t06679Z' => 'bra', 'BraA06t26050Z' => 'bra', 'BraA09t36515Z' => 'bra', 'BraA10t44827Z' => 'bra', 'C02p26990' => 'bna', 'C03p23370' => 'bna', 'C03p61870' => 'bna', 'C09p09770' => 'bna', 'C09p67870' => 'bna', 'CAN.G162.4' => 'can', 'CAN.G74.13' => 'can', 'CAN.G74.15' => 'can', 'CANSAT54G1313' => 'cansat', 'CARHR203820' => 'chi', 'CARHR278350' => 'chi', 'Carub.0002s1655' => 'cru', 'Carub.0008s2520' => 'cru', 'Ca_18393_v3' => 'car', 'CBR_g23843' => 'cbr', 'Cc02_g20770' => 'ccan', 'Cc10_g08540' => 'ccan', 'CDE04G1856' => 'cde', 'CDE07G0186' => 'cde', 'Ciclev10002776m.g' => 'ccl', 'Ciclev10029537m.g' => 'ccl', 'CiPaw.05G028600' => 'cil', 'CiPaw.06G158800' => 'cil', 'CiPaw.07G163300' => 'cil', 'ClCG08G011560' => 'cla', 'COL.COLO4_32410' => 'col', 'COL.COLO4_34249' => 'col', 'COL.COLO4_35273' => 'col', 'Cpa.g.sc1556.2' => 'cpa', 'Cpa.g.sc20.24' => 'cpa', 'Cre02.g146700' => 'cre', 'CsaV3_2G030140' => 'csa', 'CSS0000895' => 'camsi', 'CSS0029614' => 'camsi', 'CSS0030086' => 'camsi', 'CSS0031914' => 'camsi', 'CSS0041957' => 'camsi', 'DCAR_001853' => 'dca', 'Dinv01512' => 'din', 'Dinv07412' => 'din', 'Dinv12211' => 'din', 'Dinv13564' => 'din', 'Dinv16725' => 'din', 'Dinv24141' => 'din', 'Dinv30053' => 'din', 'Dinv35287' => 'din', 'Dinv36955' => 'din', 'Dinv43849' => 'din', 'Dinv44875' => 'din', 'Duzib052G0188' => 'dzi', 'Duzib052G1175' => 'dzi', 'Duzib132G0972' => 'dzi', 'Duzib248G1145' => 'dzi', 'ECA234G1117' => 'eca', 'ECA236G3977' => 'eca', 'Eucgr.I02610' => 'egr', 'FAN15G1019' => 'fan', 'FAN15G3528' => 'fan', 'FAN20G0126' => 'fan', 'FAN24G0333' => 'fan', 'FAN24G2949' => 'fan', 'FAN27G0918' => 'fan', 'FvH4_2g11490' => 'fve', 'FvH4_2g11500' => 'fve', 'Glyma.07G183000' => 'gma', 'Glyma.08G067000' => 'gma', 'Glyma.13G256000' => 'gma', 'Gohir.A03G177800' => 'ghi', 'Gohir.A06G031100' => 'ghi', 'Gohir.A13G050200' => 'ghi', 'Gohir.D02G201500' => 'ghi', 'Gohir.D06G030300' => 'ghi', 'Gohir.D13G048866' => 'ghi', 'Gohir.D13G049000' => 'ghi', 'Gorai.005G226300' => 'gra', 'Gorai.010G033300' => 'gra', 'Gorai.013G054700' => 'gra', 'GSVIVG01009202001' => 'vvi', 'GSVIVG01012539001' => 'vvi', 'HanXRQChr10g0297741' => 'han', 'HanXRQChr16g0514501' => 'han', 'Haze_10488' => 'cav', 'Haze_10491' => 'cav', 'Haze_22486' => 'cav', 'Hma1.2p1_0010F.1_g006520' => 'hma', 'Hma1.2p1_0369F.1_g137460' => 'hma', 'Hma1.2p1_0908F.1_g235530' => 'hma', 'Hma1.2p1_0908F.1_g235540' => 'hma', 'Hma1.2p1_2737F.1_g327682' => 'hma', 'Hma1.2p1_2737F.1_g327684' => 'hma', 'HPP92_017790' => 'vpl', 'HPP92_018832' => 'vpl', 'HPP92_019595' => 'vpl', 'Hund16518' => 'sun', 'Hund31122' => 'sun', 'Hund31123' => 'sun', 'Lalb_Chr05g0217911' => 'lal', 'Lalb_Chr09g0326941' => 'lal', 'Lalb_Chr16g0383001' => 'lal', 'Lj4g0012171' => 'lja', 'Lj9C347G10' => 'lonja', 'Lsat_1_v5_gn_3_1880' => 'lsa', 'Lsat_1_v5_gn_5_110320' => 'lsa', 'Lsat_1_v5_gn_5_120701' => 'lsa', 'Lsat_1_v5_gn_7_83541' => 'lsa', 'Lsat_1_v5_gn_8_96061' => 'lsa', 'Manes.07G041000' => 'mes', 'Manes.18G056800' => 'mes', 'Mapoly0071s0096' => 'mpo', 'Mapoly0137s0002' => 'mpo', 'MBI16_g30313_MAGBIO' => 'mbi', 'MCO10G279' => 'mco', 'MCO11G598' => 'mco', 'MD05G1048900' => 'mdo', 'MD08G1245600' => 'mdo', 'Medtr2g009700' => 'mtr', 'Medtr2g009710' => 'mtr', 'Medtr4g093770' => 'mtr', 'MELO3C011073.2' => 'cme', 'Migut.B00539' => 'egut', 'Migut.N01102' => 'egut', 'Migut.N01104' => 'egut', 'Migut.N01105' => 'egut', 'MSTRG.16624' => 'ama', 'MSTRG.20275' => 'ama', 'MSTRG.27818' => 'ama', 'MSTRG.5290' => 'ama', 'Nitab4.5_0001259g0060' => 'nta', 'Nitab4.5_0001259g0070' => 'nta', 'Nitab4.5_0005861g0010' => 'nta', 'Nitab4.5_0009446g0030' => 'nta', 'Nitab4.5_0022581g0010' => 'nta', 'Nitab4.5_0027918g0010' => 'nta', 'Nn1g05628' => 'nnu', 'Nn1g05629' => 'nnu', 'Nn5g29830' => 'nnu', 'Nn7g36725' => 'nnu', 'Oeu038173.1' => 'oeu', 'Oeu040882.1' => 'oeu', 'Oeu059900.1' => 'oeu', 'Oeu063548.1' => 'oeu', 'Os03g0685500' => 'osa', 'Os12g0637900' => 'osa', 'Peaxi162Scf00003g03238' => 'pax', 'Peaxi162Scf00152g00827' => 'pax', 'PGR042G0810' => 'pgr', 'PGR042G3069' => 'pgr', 'PGR102G2622' => 'pgr', 'PGR142G1682' => 'pgr', 'PGSC0003DMG400009350' => 'stu', 'PGSC0003DMG400029016' => 'stu', 'Phvul.002G214000' => 'pvu', 'Phvul.006G201300' => 'pvu', 'Potri.001G282900' => 'ptr', 'Potri.009G078100' => 'ptr', 'Pp3c14_20840' => 'ppa', 'Pp3c1_2010' => 'ppa', 'Pp3c2_30940' => 'ppa', 'Pp3c7_22902' => 'ppa', 'PRCOL_00000947' => 'pco', 'Prupe.8G071500' => 'ppe', 'Psat5g245800' => 'psa', 'Psat7g101640' => 'psa', 'PSO170G0844' => 'pso', 'PSO170G5084' => 'pso', 'PSO210G7313' => 'pso', 'QL09p018381' => 'qlo', 'QL09p018387' => 'qlo', 'QL11p025715' => 'qlo', 'QL12p040898' => 'qlo', 'RcHm_v2.0_Chr6g0270231' => 'rch', 'RcHm_v2.0_Chr6g0270481' => 'rch', 'Rhsim05G0100900' => 'rsi', 'Rhsim07G0213100' => 'rsi', 'Rhsim11G0141600' => 'rsi', 'Sabra09G0059800' => 'sbr', 'Sabra16G0176100' => 'sbr', 'SalBow1G0635' => 'sbo', 'SalBow1G4314' => 'sbo', 'SalBow6G0381' => 'sbo', 'SalBow6G2032' => 'sbo', 'SalBow6G4961' => 'sbo', 'Sc16g0000640' => 'sci', 'Sed0004611' => 'sed', 'Sed0026496' => 'sed', 'SGA_v2.0_scaffold32G12933' => 'sas', 'SGA_v2.0_scaffold337G49170' => 'sas', 'SMO147G0066' => 'smo', 'SMO239G0190' => 'smo', 'SMO361G0099' => 'smo', 'SMO361G0435' => 'smo', 'SMO364G0085' => 'smo', 'Solyc04g076600.3' => 'sly', 'Solyc10g047650.3' => 'sly', 'Solyc10g047660.1' => 'sly', 'Sopen00g012000' => 'spe', 'Sopen04g030330' => 'spe', 'Sopen10g018060' => 'spe', 'Sopen10g018070' => 'spe', 'Sp2g27490' => 'spa', 'TAR381G1072' => 'tar', 'TAR625G1276' => 'tar', 'TAR628G0637' => 'tar', 'TAR628G0781' => 'tar', 'THA.LOC104819323' => 'tha', 'Thecc.02G127700' => 'tca', 'Thecc.08G073500' => 'tca', 'Thhalv10005092m.g' => 'esa', 'Thhalv10014959m.g' => 'esa', 'Thhalv10019238m.g' => 'esa', 'TPR.G27436' => 'tpr', 'TPR.G2882' => 'tpr', 'TWI14G0247' => 'twi', 'TWI59G0391' => 'twi', 'TWI59G1057' => 'twi', 'unitig_899.g15644' => 'ugi', 'vmacro01869' => 'vma', 'vmacro04639' => 'vma', 'vmacro13022' => 'vma', 'vmacro19606' => 'vma', 'VMungo0251G1961' => 'vmu', 'Zm00001eb032240' => 'zma', 'Zm00001eb053320' => 'zma', 'Zm00001eb053330' => 'zma', 'Zm00001eb100030' => 'zma', 'Zm00001eb109070' => 'zma', 'Zm00001eb217210' => 'zma', 'Zm00001eb220290' => 'zma', 'Zm00001eb238990' => 'zma', 'Zm00001eb245660' => 'zma', 'Zm00001eb254000' => 'zma', 'Zm00001eb321480' => 'zma', 'Zm00001eb332280' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002425' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002425' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002425' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002425' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151