Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p16190 Brassica napus
A06p31070 Brassica napus
A09p08660 Brassica napus
A10p20170 Brassica napus
A10p27760 Brassica napus
Aa31LG1G17500 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.5571 Anthoceros agrestis
Actinidia04553 Actinidia chinensis
Actinidia19619 Actinidia chinensis
Actinidia28023 Actinidia chinensis
Actinidia29337 Actinidia chinensis
Ah.02g123430 Amaranthus hybridus
Ah.03g143270 Amaranthus hybridus
AL22U10130 Arabidopsis lyrata
AL6G19970 Arabidopsis lyrata
AL8G41760 Arabidopsis lyrata
Aqoxy5G01352 Aquilegia oxysepala
Aqoxy6G00822 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.68LHHN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B3LE3T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F22E5V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XH6SHZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y4VPDJ Arachis hypogaea
AT5G09570 Arabidopsis thaliana
AT5G64400 Arabidopsis thaliana
ATR0767G013 Amborella trichopoda
Atru.chr6.1302 Acer truncatum
AUR62003687 Chenopodium quinoa
AUR62017999 Chenopodium quinoa
AUR62043607 Chenopodium quinoa
BcaB04g19969 Brassica carinata
BcaB05g24496 Brassica carinata
BcaB08g37197 Brassica carinata
BcaC03g13262 Brassica carinata
BcaC03g15136 Brassica carinata
BcaC03g17508 Brassica carinata
BcaC04g23319 Brassica carinata
BolC2t06355H Brassica oleracea
BolC2t08762H Brassica oleracea
BolC3t18447H Brassica oleracea
BolC9t53888H Brassica oleracea
BolC9t59547H Brassica oleracea
BraA02t06679Z Brassica rapa
BraA06t26050Z Brassica rapa
BraA09t36515Z Brassica rapa
BraA10t44827Z Brassica rapa
C02p26990 Brassica napus
C03p23370 Brassica napus
C03p61870 Brassica napus
C09p09770 Brassica napus
C09p67870 Brassica napus
CAN.G162.4 Capsicum annuum
CAN.G74.13 Capsicum annuum
CAN.G74.15 Capsicum annuum
CANSAT54G1313 Cannabis sativa
CARHR203820 Cardamine hirsuta
CARHR278350 Cardamine hirsuta
Carub.0002s1655 Capsella rubella
Carub.0008s2520 Capsella rubella
Ca_18393_v3 Cicer arietinum L.
CBR_g23843 Chara braunii
Cc02_g20770 Coffea canephora
Cc10_g08540 Coffea canephora
CDE04G1856 Ceratophyllum demersum
CDE07G0186 Ceratophyllum demersum
Ciclev10002776m.g Citrus clementina
Ciclev10029537m.g Citrus clementina
CiPaw.05G028600 Carya illinoinensis
CiPaw.06G158800 Carya illinoinensis
CiPaw.07G163300 Carya illinoinensis
ClCG08G011560 Citrullus lanatus
COL.COLO4_32410 Corchorus olitorius
COL.COLO4_34249 Corchorus olitorius
COL.COLO4_35273 Corchorus olitorius
Cpa.g.sc1556.2 Carica papaya
Cpa.g.sc20.24 Carica papaya
Cre02.g146700 Chlamydomonas reinhardtii
CsaV3_2G030140 Cucumis sativus L.
CSS0000895 Camellia sinensis var. sinensis
CSS0029614 Camellia sinensis var. sinensis
CSS0030086 Camellia sinensis var. sinensis
CSS0031914 Camellia sinensis var. sinensis
CSS0041957 Camellia sinensis var. sinensis
DCAR_001853 Daucus carota
Dinv01512 Davidia involucrata
Dinv07412 Davidia involucrata
Dinv12211 Davidia involucrata
Dinv13564 Davidia involucrata
Dinv16725 Davidia involucrata
Dinv24141 Davidia involucrata
Dinv30053 Davidia involucrata
Dinv35287 Davidia involucrata
Dinv36955 Davidia involucrata
Dinv43849 Davidia involucrata
Dinv44875 Davidia involucrata
Duzib052G0188 Durio zibethinus
Duzib052G1175 Durio zibethinus
Duzib132G0972 Durio zibethinus
Duzib248G1145 Durio zibethinus
ECA234G1117 Erigeron canadensis
ECA236G3977 Erigeron canadensis
Eucgr.I02610 Eucalyptus grandis
FAN15G1019 Fragaria x ananassa
FAN15G3528 Fragaria x ananassa
FAN20G0126 Fragaria x ananassa
FAN24G0333 Fragaria x ananassa
FAN24G2949 Fragaria x ananassa
FAN27G0918 Fragaria x ananassa
FvH4_2g11490 Fragaria vesca
FvH4_2g11500 Fragaria vesca
Glyma.07G183000 Glycine max
Glyma.08G067000 Glycine max
Glyma.13G256000 Glycine max
Gohir.A03G177800 Gossypium hirsutum
Gohir.A06G031100 Gossypium hirsutum
Gohir.A13G050200 Gossypium hirsutum
Gohir.D02G201500 Gossypium hirsutum
Gohir.D06G030300 Gossypium hirsutum
Gohir.D13G048866 Gossypium hirsutum
Gohir.D13G049000 Gossypium hirsutum
Gorai.005G226300 Gossypium raimondii
Gorai.010G033300 Gossypium raimondii
Gorai.013G054700 Gossypium raimondii
GSVIVG01009202001 Vitis vinifera
GSVIVG01012539001 Vitis vinifera
HanXRQChr10g0297741 Helianthus annuus
HanXRQChr16g0514501 Helianthus annuus
Haze_10488 Corylus avellana
Haze_10491 Corylus avellana
Haze_22486 Corylus avellana
Hma1.2p1_0010F.1_g006520 Hydrangea macrophylla
Hma1.2p1_0369F.1_g137460 Hydrangea macrophylla
Hma1.2p1_0908F.1_g235530 Hydrangea macrophylla
Hma1.2p1_0908F.1_g235540 Hydrangea macrophylla
Hma1.2p1_2737F.1_g327682 Hydrangea macrophylla
Hma1.2p1_2737F.1_g327684 Hydrangea macrophylla
HPP92_017790 Vanilla planifolia
HPP92_018832 Vanilla planifolia
HPP92_019595 Vanilla planifolia
Hund16518 Selenicereus undatus
Hund31122 Selenicereus undatus
Hund31123 Selenicereus undatus
Lalb_Chr05g0217911 Lupinus albus
Lalb_Chr09g0326941 Lupinus albus
Lalb_Chr16g0383001 Lupinus albus
Lj4g0012171 Lotus japonicus
Lj9C347G10 Lonicera japonica
Lsat_1_v5_gn_3_1880 Lactuca sativa
Lsat_1_v5_gn_5_110320 Lactuca sativa
Lsat_1_v5_gn_5_120701 Lactuca sativa
Lsat_1_v5_gn_7_83541 Lactuca sativa
Lsat_1_v5_gn_8_96061 Lactuca sativa
Manes.07G041000 Manihot esculenta
Manes.18G056800 Manihot esculenta
Mapoly0071s0096 Marchantia polymorpha
Mapoly0137s0002 Marchantia polymorpha
MBI16_g30313_MAGBIO Magnolia biondii
MCO10G279 Micromonas commoda
MCO11G598 Micromonas commoda
MD05G1048900 Malus domestica
MD08G1245600 Malus domestica
Medtr2g009700 Medicago truncatula
Medtr2g009710 Medicago truncatula
Medtr4g093770 Medicago truncatula
MELO3C011073.2 Cucumis melo
Migut.B00539 Erythranthe guttata
Migut.N01102 Erythranthe guttata
Migut.N01104 Erythranthe guttata
Migut.N01105 Erythranthe guttata
MSTRG.16624 Avicennia marina
MSTRG.20275 Avicennia marina
MSTRG.27818 Avicennia marina
MSTRG.5290 Avicennia marina
Nitab4.5_0001259g0060 Nicotiana tabacum
Nitab4.5_0001259g0070 Nicotiana tabacum
Nitab4.5_0005861g0010 Nicotiana tabacum
Nitab4.5_0009446g0030 Nicotiana tabacum
Nitab4.5_0022581g0010 Nicotiana tabacum
Nitab4.5_0027918g0010 Nicotiana tabacum
Nn1g05628 Nelumbo nucifera
Nn1g05629 Nelumbo nucifera
Nn5g29830 Nelumbo nucifera
Nn7g36725 Nelumbo nucifera
Oeu038173.1 Olea europaea
Oeu040882.1 Olea europaea
Oeu059900.1 Olea europaea
Oeu063548.1 Olea europaea
Os03g0685500 Oryza sativa ssp. japonica
Os12g0637900 Oryza sativa ssp. japonica
Peaxi162Scf00003g03238 Petunia axillaris
Peaxi162Scf00152g00827 Petunia axillaris
PGR042G0810 Punica granatum
PGR042G3069 Punica granatum
PGR102G2622 Punica granatum
PGR142G1682 Punica granatum
PGSC0003DMG400009350 Solanum tuberosum
PGSC0003DMG400029016 Solanum tuberosum
Phvul.002G214000 Phaseolus vulgaris
Phvul.006G201300 Phaseolus vulgaris
Potri.001G282900 Populus trichocarpa
Potri.009G078100 Populus trichocarpa
Pp3c14_20840 Physcomitrium patens
Pp3c1_2010 Physcomitrium patens
Pp3c2_30940 Physcomitrium patens
Pp3c7_22902 Physcomitrium patens
PRCOL_00000947 Prasinoderma coloniale
Prupe.8G071500 Prunus persica
Psat5g245800 Pisum sativum
Psat7g101640 Pisum sativum
PSO170G0844 Papaver somniferum
PSO170G5084 Papaver somniferum
PSO210G7313 Papaver somniferum
QL09p018381 Quercus lobata
QL09p018387 Quercus lobata
QL11p025715 Quercus lobata
QL12p040898 Quercus lobata
RcHm_v2.0_Chr6g0270231 Rosa chinensis
RcHm_v2.0_Chr6g0270481 Rosa chinensis
Rhsim05G0100900 Rhododendron simsii
Rhsim07G0213100 Rhododendron simsii
Rhsim11G0141600 Rhododendron simsii
Sabra09G0059800 Salix brachista
Sabra16G0176100 Salix brachista
SalBow1G0635 Salvia bowleyana
SalBow1G4314 Salvia bowleyana
SalBow6G0381 Salvia bowleyana
SalBow6G2032 Salvia bowleyana
SalBow6G4961 Salvia bowleyana
Sc16g0000640 Simmondsia chinensis
Sed0004611 Sechium edule
Sed0026496 Sechium edule
SGA_v2.0_scaffold32G12933 Striga asiatica
SGA_v2.0_scaffold337G49170 Striga asiatica
SMO147G0066 Selaginella moellendorffii
SMO239G0190 Selaginella moellendorffii
SMO361G0099 Selaginella moellendorffii
SMO361G0435 Selaginella moellendorffii
SMO364G0085 Selaginella moellendorffii
Solyc04g076600.3 Solanum lycopersicum
Solyc10g047650.3 Solanum lycopersicum
Solyc10g047660.1 Solanum lycopersicum
Sopen00g012000 Solanum pennellii
Sopen04g030330 Solanum pennellii
Sopen10g018060 Solanum pennellii
Sopen10g018070 Solanum pennellii
Sp2g27490 Schrenkiella parvula
TAR381G1072 Trochodendron aralioides
TAR625G1276 Trochodendron aralioides
TAR628G0637 Trochodendron aralioides
TAR628G0781 Trochodendron aralioides
THA.LOC104819323 Tarenaya hassleriana
Thecc.02G127700 Theobroma cacao
Thecc.08G073500 Theobroma cacao
Thhalv10005092m.g Eutrema salsugineum
Thhalv10014959m.g Eutrema salsugineum
Thhalv10019238m.g Eutrema salsugineum
TPR.G27436 Trifolium pratense
TPR.G2882 Trifolium pratense
TWI14G0247 Tripterygium wilfordii
TWI59G0391 Tripterygium wilfordii
TWI59G1057 Tripterygium wilfordii
unitig_899.g15644 Utricularia gibba
vmacro01869 Vaccinium macrocarpon
vmacro04639 Vaccinium macrocarpon
vmacro13022 Vaccinium macrocarpon
vmacro19606 Vaccinium macrocarpon
VMungo0251G1961 Vigna mungo
Zm00001eb032240 Zea mays
Zm00001eb053320 Zea mays
Zm00001eb053330 Zea mays
Zm00001eb100030 Zea mays
Zm00001eb109070 Zea mays
Zm00001eb217210 Zea mays
Zm00001eb220290 Zea mays
Zm00001eb238990 Zea mays
Zm00001eb245660 Zea mays
Zm00001eb254000 Zea mays
Zm00001eb321480 Zea mays
Zm00001eb332280 Zea mays

User provided reference genes

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