Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002254', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '299', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p04230' => 'bna', 'A04p05530' => 'bna', 'A06p31380' => 'bna', 'A07p22040' => 'bna', 'A09p08760' => 'bna', 'A09p47210' => 'bna', 'Aa31LG1G17310' => 'aar', 'Aa31LG3G17330' => 'aar', 'Aa31LG7G5710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4427' => 'aag', 'Actinidia06650' => 'ach', 'Actinidia11641' => 'ach', 'Actinidia23145' => 'ach', 'Actinidia23146' => 'ach', 'Ah.01g009370' => 'amhyb', 'AL5G35250' => 'aly', 'AL6G20170' => 'aly', 'AL8G42060' => 'aly', 'Aqoxy5G00323' => 'aox', 'Aqoxy7G00509' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0WC7DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KW32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FM41R7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNHU3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1TEIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZPA39L' => 'arhy', 'AT3G54210' => 'ath', 'AT5G09770' => 'ath', 'AT5G64650' => 'ath', 'ATR0681G323' => 'atr', 'ATR1101G029' => 'atr', 'ATR1127G028' => 'atr', 'Atru.chr4.828' => 'acertr', 'Atru.chr8.28' => 'acertr', 'AUR62008494' => 'cqu', 'AUR62010099' => 'cqu', 'AUR62013095' => 'cqu', 'AUR62021595' => 'cqu', 'BcaB01g05562' => 'bca', 'BcaB01g05660' => 'bca', 'BcaB02g07743' => 'bca', 'BcaB04g19981' => 'bca', 'BcaC02g09080' => 'bca', 'BcaC04g23302' => 'bca', 'BcaC07g39763' => 'bca', 'BcaC08g44675' => 'bca', 'BolC3t13002H' => 'bol', 'BolC3t13004H' => 'bol', 'BolC3t18414H' => 'bol', 'BolC4t25397H' => 'bol', 'BolC6t37390H' => 'bol', 'BolC8t50549H' => 'bol', 'BolC9t53900H' => 'bol', 'BraA03t09768Z' => 'bra', 'BraA04t16254Z' => 'bra', 'BraA06t26080Z' => 'bra', 'BraA07t29887Z' => 'bra', 'BraA09t36526Z' => 'bra', 'BraA09t40182Z' => 'bra', 'C03p04680' => 'bna', 'C03p61540' => 'bna', 'C04p38220' => 'bna', 'C06p22020' => 'bna', 'C08p29470' => 'bna', 'C09p09930' => 'bna', 'CAN.G679.3' => 'can', 'CAN.G874.58' => 'can', 'CAN.G874.59' => 'can', 'CANSAT01G2903' => 'cansat', 'CANSAT54G1112' => 'cansat', 'CARHR164110' => 'chi', 'CARHR203630' => 'chi', 'CARHR278620' => 'chi', 'Carub.0005s2080' => 'cru', 'Carub.0006s0818' => 'cru', 'Carub.0008s2544' => 'cru', 'Ca_15090_v3' => 'car', 'Ca_16929_v3' => 'car', 'CBR_g41367' => 'cbr', 'Cc01_g15590' => 'ccan', 'Cc07_g18050' => 'ccan', 'CDE04G0736' => 'cde', 'CDE04G1571' => 'cde', 'Cfa002830' => 'cfa', 'Cfa016984' => 'cfa', 'Cfa022005' => 'cfa', 'Ciclev10012716m.g' => 'ccl', 'Ciclev10026667m.g' => 'ccl', 'CiPaw.03G128400' => 'cil', 'CiPaw.13G059600' => 'cil', 'ClCG01G015530' => 'cla', 'ClCG10G022870' => 'cla', 'COL.COLO4_01671' => 'col', 'COL.COLO4_14017' => 'col', 'COL.COLO4_32824' => 'col', 'Cpa.g.sc0.26' => 'cpa', 'Cpa.g.sc42.118' => 'cpa', 'Cre02.g108850' => 'cre', 'Cre03.g181350' => 'cre', 'CsaV3_3G032940' => 'csa', 'CsaV3_6G041770' => 'csa', 'CSS0012262' => 'camsi', 'CSS0017576' => 'camsi', 'CSS0030870' => 'camsi', 'CSS0049771' => 'camsi', 'DCAR_001358' => 'dca', 'DCAR_005761' => 'dca', 'DCAR_018592' => 'dca', 'Dinv24771' => 'din', 'Dinv28764' => 'din', 'Dinv30096' => 'din', 'Duzib128G0245' => 'dzi', 'Duzib147G0903' => 'dzi', 'Duzib264G0949' => 'dzi', 'ECA246G3091' => 'eca', 'ECA247G2299' => 'eca', 'EL10Ac1g01201' => 'bvu', 'EL10Ac5g11097' => 'bvu', 'EL10Ac5g11356' => 'bvu', 'EL10Ac5g11449' => 'bvu', 'EL10Ac5g12108' => 'bvu', 'EL10Ac9g21444' => 'bvu', 'Eucgr.A00878' => 'egr', 'Eucgr.H04941' => 'egr', 'FAN02G1608' => 'fan', 'FAN05G2623' => 'fan', 'FAN09G4628' => 'fan', 'FAN11G0976' => 'fan', 'FAN14G5469' => 'fan', 'FAN16G3547' => 'fan', 'FAN21G0823' => 'fan', 'FvH4_3g14560' => 'fve', 'FvH4_6g09150' => 'fve', 'Glyma.04G214500' => 'gma', 'Glyma.06G151700' => 'gma', 'Glyma.11G201700' => 'gma', 'Glyma.18G049200' => 'gma', 'Gohir.A01G176800' => 'ghi', 'Gohir.A08G221638' => 'ghi', 'Gohir.D01G113350' => 'ghi', 'Gohir.D01G167600' => 'ghi', 'Gohir.D08G240100' => 'ghi', 'Gorai.002G138500' => 'gra', 'Gorai.002G208300' => 'gra', 'Gorai.004G255400' => 'gra', 'Gorai.008G092200' => 'gra', 'GSVIVG01026526001' => 'vvi', 'GSVIVG01037929001' => 'vvi', 'HanXRQChr05g0152951' => 'han', 'HanXRQChr08g0231141' => 'han', 'HanXRQChr08g0236341' => 'han', 'Haze_21223' => 'cav', 'Haze_25127' => 'cav', 'Hma1.2p1_0183F.1_g080930' => 'hma', 'HPP92_007570' => 'vpl', 'HPP92_013211' => 'vpl', 'HPP92_013266' => 'vpl', 'HPP92_013271' => 'vpl', 'Hund06402' => 'sun', 'Hund09850' => 'sun', 'Lalb_Chr08g0238481' => 'lal', 'Lalb_Chr11g0068321' => 'lal', 'Lalb_Chr11g0068331' => 'lal', 'Lalb_Chr15g0085571' => 'lal', 'Lj1g0024859' => 'lja', 'Lj1P109T20' => 'lonja', 'Lj2A603T35' => 'lonja', 'Lj6g0000138' => 'lja', 'Lsat_1_v5_gn_3_37780' => 'lsa', 'Lsat_1_v5_gn_9_15461' => 'lsa', 'Manes.08G166500' => 'mes', 'Manes.12G153000' => 'mes', 'Mapoly0013s0204' => 'mpo', 'Mapoly0072s0005' => 'mpo', 'MBI10_g06742_MAGBIO' => 'mbi', 'MBI15_g37412_MAGBIO' => 'mbi', 'MBI15_g47100_MAGBIO' => 'mbi', 'MCO04G031' => 'mco', 'MD01G1012100' => 'mdo', 'MD12G1195700' => 'mdo', 'MD15G1337900' => 'mdo', 'Medtr3g062930' => 'mtr', 'Medtr3g095900' => 'mtr', 'Medtr8g103900' => 'mtr', 'MELO3C008044.2' => 'cme', 'MELO3C009091.2' => 'cme', 'Migut.H00743' => 'egut', 'Migut.N00708' => 'egut', 'MSTRG.12720' => 'ama', 'MSTRG.2664' => 'ama', 'Nitab4.5_0000105g0390' => 'nta', 'Nitab4.5_0000195g0170' => 'nta', 'Nitab4.5_0000250g0020' => 'nta', 'Nitab4.5_0002399g0050' => 'nta', 'Nitab4.5_0002902g0070' => 'nta', 'Nitab4.5_0004141g0030' => 'nta', 'Nn5g28635' => 'nnu', 'Nn8g41044' => 'nnu', 'Oeu000401.1' => 'oeu', 'Oeu037798.1' => 'oeu', 'Oeu038989.2' => 'oeu', 'Oeu047679.1' => 'oeu', 'Os01g0839300' => 'osa', 'Os03g0815400' => 'osa', 'Os05g0460700' => 'osa', 'Peaxi162Scf00105g00116' => 'pax', 'Peaxi162Scf00293g00714' => 'pax', 'Peaxi162Scf00390g00134' => 'pax', 'PGR031G1856' => 'pgr', 'PGR102G3355' => 'pgr', 'PGR142G4456' => 'pgr', 'PGSC0003DMG400014486' => 'stu', 'PGSC0003DMG400027674' => 'stu', 'PGSC0003DMG400027675' => 'stu', 'Phvul.006G082300' => 'pvu', 'Phvul.009G111900' => 'pvu', 'Phvul.009G148700' => 'pvu', 'Potri.005G061700' => 'ptr', 'Potri.006G113500' => 'ptr', 'Potri.007G107100' => 'ptr', 'Potri.016G143100' => 'ptr', 'Pp3c12_10340' => 'ppa', 'Pp3c13_21730' => 'ppa', 'Pp3c16_7040' => 'ppa', 'Pp3c3_12090' => 'ppa', 'PRCOL_00002809' => 'pco', 'PRCOL_00002810' => 'pco', 'PRCOL_00003552' => 'pco', 'Prupe.6G037700' => 'ppe', 'Prupe.6G158000' => 'ppe', 'Prupe.6G300200' => 'ppe', 'Psat5g056880' => 'psa', 'Psat5g146400' => 'psa', 'PSO339G2538' => 'pso', 'PSO384G4509' => 'pso', 'PSO541G1616' => 'pso', 'PSO675G4286' => 'pso', 'PSO675G8066' => 'pso', 'QL01p023470' => 'qlo', 'QL06p029474' => 'qlo', 'RcHm_v2.0_Chr2g0104481' => 'rch', 'RcHm_v2.0_Chr3g0459361' => 'rch', 'RcHm_v2.0_Chr5g0024011' => 'rch', 'RcHm_v2.0_Chr7g0188221' => 'rch', 'Rhsim13G0056900' => 'rsi', 'Sabra04G0159100' => 'sbr', 'Sabra05G0051900' => 'sbr', 'Sabra06G0088400' => 'sbr', 'Sabra07G0087600' => 'sbr', 'SalBow4G0335' => 'sbo', 'SalBow4G0817' => 'sbo', 'Sc04g0003040' => 'sci', 'Sc06g0001400' => 'sci', 'Sed0005738' => 'sed', 'Sed0017028' => 'sed', 'SEGI_31183' => 'sgi', 'SEGI_39786' => 'sgi', 'SGA_v2.0_scaffold120G33007' => 'sas', 'SGA_v2.0_scaffold77G25339' => 'sas', 'SGA_v2.0_scaffold77G25344' => 'sas', 'SHI11445' => 'shi', 'SMO118G0002' => 'smo', 'SMO364G0779' => 'smo', 'Solyc06g082750.3' => 'sly', 'Solyc06g082760.4' => 'sly', 'Solyc08g067950.3' => 'sly', 'Sopen06g034110' => 'spe', 'Sopen06g034120' => 'spe', 'Sopen08g021870' => 'spe', 'Sp2g27710' => 'spa', 'Sp5g08190' => 'spa', 'Sp6g33620' => 'spa', 'TAR376G0897' => 'tar', 'TAR381G1435' => 'tar', 'TAR633G2622' => 'tar', 'THA.LOC104799480' => 'tha', 'THA.LOC104818462' => 'tha', 'THA.LOC104824208' => 'tha', 'Thecc.01G127100' => 'tca', 'Thecc.05G225800' => 'tca', 'Thhalv10005089m.g' => 'esa', 'Thhalv10010668m.g' => 'esa', 'Thhalv10014895m.g' => 'esa', 'TPR.G13826' => 'tpr', 'TPR.G34646' => 'tpr', 'TWI31G0091' => 'twi', 'TWI74G1237' => 'twi', 'TWI75G1050' => 'twi', 'TWI77G0622' => 'twi', 'unitig_26.g10227' => 'ugi', 'unitig_8.g4580' => 'ugi', 'vmacro02859' => 'vma', 'vmacro14290' => 'vma', 'VMungo0540G2320' => 'vmu', 'VMungo0647G1804' => 'vmu', 'VMungo1309G0562' => 'vmu', 'Zm00001eb212080' => 'zma', 'Zm00001eb368030' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002254', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002254' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002254', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '299', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002254' ) ), 'genes' => array( 'A03p04230' => 'bna', 'A04p05530' => 'bna', 'A06p31380' => 'bna', 'A07p22040' => 'bna', 'A09p08760' => 'bna', 'A09p47210' => 'bna', 'Aa31LG1G17310' => 'aar', 'Aa31LG3G17330' => 'aar', 'Aa31LG7G5710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4427' => 'aag', 'Actinidia06650' => 'ach', 'Actinidia11641' => 'ach', 'Actinidia23145' => 'ach', 'Actinidia23146' => 'ach', 'Ah.01g009370' => 'amhyb', 'AL5G35250' => 'aly', 'AL6G20170' => 'aly', 'AL8G42060' => 'aly', 'Aqoxy5G00323' => 'aox', 'Aqoxy7G00509' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0WC7DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KW32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FM41R7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNHU3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1TEIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZPA39L' => 'arhy', 'AT3G54210' => 'ath', 'AT5G09770' => 'ath', 'AT5G64650' => 'ath', 'ATR0681G323' => 'atr', 'ATR1101G029' => 'atr', 'ATR1127G028' => 'atr', 'Atru.chr4.828' => 'acertr', 'Atru.chr8.28' => 'acertr', 'AUR62008494' => 'cqu', 'AUR62010099' => 'cqu', 'AUR62013095' => 'cqu', 'AUR62021595' => 'cqu', 'BcaB01g05562' => 'bca', 'BcaB01g05660' => 'bca', 'BcaB02g07743' => 'bca', 'BcaB04g19981' => 'bca', 'BcaC02g09080' => 'bca', 'BcaC04g23302' => 'bca', 'BcaC07g39763' => 'bca', 'BcaC08g44675' => 'bca', 'BolC3t13002H' => 'bol', 'BolC3t13004H' => 'bol', 'BolC3t18414H' => 'bol', 'BolC4t25397H' => 'bol', 'BolC6t37390H' => 'bol', 'BolC8t50549H' => 'bol', 'BolC9t53900H' => 'bol', 'BraA03t09768Z' => 'bra', 'BraA04t16254Z' => 'bra', 'BraA06t26080Z' => 'bra', 'BraA07t29887Z' => 'bra', 'BraA09t36526Z' => 'bra', 'BraA09t40182Z' => 'bra', 'C03p04680' => 'bna', 'C03p61540' => 'bna', 'C04p38220' => 'bna', 'C06p22020' => 'bna', 'C08p29470' => 'bna', 'C09p09930' => 'bna', 'CAN.G679.3' => 'can', 'CAN.G874.58' => 'can', 'CAN.G874.59' => 'can', 'CANSAT01G2903' => 'cansat', 'CANSAT54G1112' => 'cansat', 'CARHR164110' => 'chi', 'CARHR203630' => 'chi', 'CARHR278620' => 'chi', 'Carub.0005s2080' => 'cru', 'Carub.0006s0818' => 'cru', 'Carub.0008s2544' => 'cru', 'Ca_15090_v3' => 'car', 'Ca_16929_v3' => 'car', 'CBR_g41367' => 'cbr', 'Cc01_g15590' => 'ccan', 'Cc07_g18050' => 'ccan', 'CDE04G0736' => 'cde', 'CDE04G1571' => 'cde', 'Cfa002830' => 'cfa', 'Cfa016984' => 'cfa', 'Cfa022005' => 'cfa', 'Ciclev10012716m.g' => 'ccl', 'Ciclev10026667m.g' => 'ccl', 'CiPaw.03G128400' => 'cil', 'CiPaw.13G059600' => 'cil', 'ClCG01G015530' => 'cla', 'ClCG10G022870' => 'cla', 'COL.COLO4_01671' => 'col', 'COL.COLO4_14017' => 'col', 'COL.COLO4_32824' => 'col', 'Cpa.g.sc0.26' => 'cpa', 'Cpa.g.sc42.118' => 'cpa', 'Cre02.g108850' => 'cre', 'Cre03.g181350' => 'cre', 'CsaV3_3G032940' => 'csa', 'CsaV3_6G041770' => 'csa', 'CSS0012262' => 'camsi', 'CSS0017576' => 'camsi', 'CSS0030870' => 'camsi', 'CSS0049771' => 'camsi', 'DCAR_001358' => 'dca', 'DCAR_005761' => 'dca', 'DCAR_018592' => 'dca', 'Dinv24771' => 'din', 'Dinv28764' => 'din', 'Dinv30096' => 'din', 'Duzib128G0245' => 'dzi', 'Duzib147G0903' => 'dzi', 'Duzib264G0949' => 'dzi', 'ECA246G3091' => 'eca', 'ECA247G2299' => 'eca', 'EL10Ac1g01201' => 'bvu', 'EL10Ac5g11097' => 'bvu', 'EL10Ac5g11356' => 'bvu', 'EL10Ac5g11449' => 'bvu', 'EL10Ac5g12108' => 'bvu', 'EL10Ac9g21444' => 'bvu', 'Eucgr.A00878' => 'egr', 'Eucgr.H04941' => 'egr', 'FAN02G1608' => 'fan', 'FAN05G2623' => 'fan', 'FAN09G4628' => 'fan', 'FAN11G0976' => 'fan', 'FAN14G5469' => 'fan', 'FAN16G3547' => 'fan', 'FAN21G0823' => 'fan', 'FvH4_3g14560' => 'fve', 'FvH4_6g09150' => 'fve', 'Glyma.04G214500' => 'gma', 'Glyma.06G151700' => 'gma', 'Glyma.11G201700' => 'gma', 'Glyma.18G049200' => 'gma', 'Gohir.A01G176800' => 'ghi', 'Gohir.A08G221638' => 'ghi', 'Gohir.D01G113350' => 'ghi', 'Gohir.D01G167600' => 'ghi', 'Gohir.D08G240100' => 'ghi', 'Gorai.002G138500' => 'gra', 'Gorai.002G208300' => 'gra', 'Gorai.004G255400' => 'gra', 'Gorai.008G092200' => 'gra', 'GSVIVG01026526001' => 'vvi', 'GSVIVG01037929001' => 'vvi', 'HanXRQChr05g0152951' => 'han', 'HanXRQChr08g0231141' => 'han', 'HanXRQChr08g0236341' => 'han', 'Haze_21223' => 'cav', 'Haze_25127' => 'cav', 'Hma1.2p1_0183F.1_g080930' => 'hma', 'HPP92_007570' => 'vpl', 'HPP92_013211' => 'vpl', 'HPP92_013266' => 'vpl', 'HPP92_013271' => 'vpl', 'Hund06402' => 'sun', 'Hund09850' => 'sun', 'Lalb_Chr08g0238481' => 'lal', 'Lalb_Chr11g0068321' => 'lal', 'Lalb_Chr11g0068331' => 'lal', 'Lalb_Chr15g0085571' => 'lal', 'Lj1g0024859' => 'lja', 'Lj1P109T20' => 'lonja', 'Lj2A603T35' => 'lonja', 'Lj6g0000138' => 'lja', 'Lsat_1_v5_gn_3_37780' => 'lsa', 'Lsat_1_v5_gn_9_15461' => 'lsa', 'Manes.08G166500' => 'mes', 'Manes.12G153000' => 'mes', 'Mapoly0013s0204' => 'mpo', 'Mapoly0072s0005' => 'mpo', 'MBI10_g06742_MAGBIO' => 'mbi', 'MBI15_g37412_MAGBIO' => 'mbi', 'MBI15_g47100_MAGBIO' => 'mbi', 'MCO04G031' => 'mco', 'MD01G1012100' => 'mdo', 'MD12G1195700' => 'mdo', 'MD15G1337900' => 'mdo', 'Medtr3g062930' => 'mtr', 'Medtr3g095900' => 'mtr', 'Medtr8g103900' => 'mtr', 'MELO3C008044.2' => 'cme', 'MELO3C009091.2' => 'cme', 'Migut.H00743' => 'egut', 'Migut.N00708' => 'egut', 'MSTRG.12720' => 'ama', 'MSTRG.2664' => 'ama', 'Nitab4.5_0000105g0390' => 'nta', 'Nitab4.5_0000195g0170' => 'nta', 'Nitab4.5_0000250g0020' => 'nta', 'Nitab4.5_0002399g0050' => 'nta', 'Nitab4.5_0002902g0070' => 'nta', 'Nitab4.5_0004141g0030' => 'nta', 'Nn5g28635' => 'nnu', 'Nn8g41044' => 'nnu', 'Oeu000401.1' => 'oeu', 'Oeu037798.1' => 'oeu', 'Oeu038989.2' => 'oeu', 'Oeu047679.1' => 'oeu', 'Os01g0839300' => 'osa', 'Os03g0815400' => 'osa', 'Os05g0460700' => 'osa', 'Peaxi162Scf00105g00116' => 'pax', 'Peaxi162Scf00293g00714' => 'pax', 'Peaxi162Scf00390g00134' => 'pax', 'PGR031G1856' => 'pgr', 'PGR102G3355' => 'pgr', 'PGR142G4456' => 'pgr', 'PGSC0003DMG400014486' => 'stu', 'PGSC0003DMG400027674' => 'stu', 'PGSC0003DMG400027675' => 'stu', 'Phvul.006G082300' => 'pvu', 'Phvul.009G111900' => 'pvu', 'Phvul.009G148700' => 'pvu', 'Potri.005G061700' => 'ptr', 'Potri.006G113500' => 'ptr', 'Potri.007G107100' => 'ptr', 'Potri.016G143100' => 'ptr', 'Pp3c12_10340' => 'ppa', 'Pp3c13_21730' => 'ppa', 'Pp3c16_7040' => 'ppa', 'Pp3c3_12090' => 'ppa', 'PRCOL_00002809' => 'pco', 'PRCOL_00002810' => 'pco', 'PRCOL_00003552' => 'pco', 'Prupe.6G037700' => 'ppe', 'Prupe.6G158000' => 'ppe', 'Prupe.6G300200' => 'ppe', 'Psat5g056880' => 'psa', 'Psat5g146400' => 'psa', 'PSO339G2538' => 'pso', 'PSO384G4509' => 'pso', 'PSO541G1616' => 'pso', 'PSO675G4286' => 'pso', 'PSO675G8066' => 'pso', 'QL01p023470' => 'qlo', 'QL06p029474' => 'qlo', 'RcHm_v2.0_Chr2g0104481' => 'rch', 'RcHm_v2.0_Chr3g0459361' => 'rch', 'RcHm_v2.0_Chr5g0024011' => 'rch', 'RcHm_v2.0_Chr7g0188221' => 'rch', 'Rhsim13G0056900' => 'rsi', 'Sabra04G0159100' => 'sbr', 'Sabra05G0051900' => 'sbr', 'Sabra06G0088400' => 'sbr', 'Sabra07G0087600' => 'sbr', 'SalBow4G0335' => 'sbo', 'SalBow4G0817' => 'sbo', 'Sc04g0003040' => 'sci', 'Sc06g0001400' => 'sci', 'Sed0005738' => 'sed', 'Sed0017028' => 'sed', 'SEGI_31183' => 'sgi', 'SEGI_39786' => 'sgi', 'SGA_v2.0_scaffold120G33007' => 'sas', 'SGA_v2.0_scaffold77G25339' => 'sas', 'SGA_v2.0_scaffold77G25344' => 'sas', 'SHI11445' => 'shi', 'SMO118G0002' => 'smo', 'SMO364G0779' => 'smo', 'Solyc06g082750.3' => 'sly', 'Solyc06g082760.4' => 'sly', 'Solyc08g067950.3' => 'sly', 'Sopen06g034110' => 'spe', 'Sopen06g034120' => 'spe', 'Sopen08g021870' => 'spe', 'Sp2g27710' => 'spa', 'Sp5g08190' => 'spa', 'Sp6g33620' => 'spa', 'TAR376G0897' => 'tar', 'TAR381G1435' => 'tar', 'TAR633G2622' => 'tar', 'THA.LOC104799480' => 'tha', 'THA.LOC104818462' => 'tha', 'THA.LOC104824208' => 'tha', 'Thecc.01G127100' => 'tca', 'Thecc.05G225800' => 'tca', 'Thhalv10005089m.g' => 'esa', 'Thhalv10010668m.g' => 'esa', 'Thhalv10014895m.g' => 'esa', 'TPR.G13826' => 'tpr', 'TPR.G34646' => 'tpr', 'TWI31G0091' => 'twi', 'TWI74G1237' => 'twi', 'TWI75G1050' => 'twi', 'TWI77G0622' => 'twi', 'unitig_26.g10227' => 'ugi', 'unitig_8.g4580' => 'ugi', 'vmacro02859' => 'vma', 'vmacro14290' => 'vma', 'VMungo0540G2320' => 'vmu', 'VMungo0647G1804' => 'vmu', 'VMungo1309G0562' => 'vmu', 'Zm00001eb212080' => 'zma', 'Zm00001eb368030' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002254' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002254' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002254' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002254' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002254', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '299', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p04230' => 'bna', 'A04p05530' => 'bna', 'A06p31380' => 'bna', 'A07p22040' => 'bna', 'A09p08760' => 'bna', 'A09p47210' => 'bna', 'Aa31LG1G17310' => 'aar', 'Aa31LG3G17330' => 'aar', 'Aa31LG7G5710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4427' => 'aag', 'Actinidia06650' => 'ach', 'Actinidia11641' => 'ach', 'Actinidia23145' => 'ach', 'Actinidia23146' => 'ach', 'Ah.01g009370' => 'amhyb', 'AL5G35250' => 'aly', 'AL6G20170' => 'aly', 'AL8G42060' => 'aly', 'Aqoxy5G00323' => 'aox', 'Aqoxy7G00509' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0WC7DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KW32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FM41R7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNHU3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1TEIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZPA39L' => 'arhy', 'AT3G54210' => 'ath', 'AT5G09770' => 'ath', 'AT5G64650' => 'ath', 'ATR0681G323' => 'atr', 'ATR1101G029' => 'atr', 'ATR1127G028' => 'atr', 'Atru.chr4.828' => 'acertr', 'Atru.chr8.28' => 'acertr', 'AUR62008494' => 'cqu', 'AUR62010099' => 'cqu', 'AUR62013095' => 'cqu', 'AUR62021595' => 'cqu', 'BcaB01g05562' => 'bca', 'BcaB01g05660' => 'bca', 'BcaB02g07743' => 'bca', 'BcaB04g19981' => 'bca', 'BcaC02g09080' => 'bca', 'BcaC04g23302' => 'bca', 'BcaC07g39763' => 'bca', 'BcaC08g44675' => 'bca', 'BolC3t13002H' => 'bol', 'BolC3t13004H' => 'bol', 'BolC3t18414H' => 'bol', 'BolC4t25397H' => 'bol', 'BolC6t37390H' => 'bol', 'BolC8t50549H' => 'bol', 'BolC9t53900H' => 'bol', 'BraA03t09768Z' => 'bra', 'BraA04t16254Z' => 'bra', 'BraA06t26080Z' => 'bra', 'BraA07t29887Z' => 'bra', 'BraA09t36526Z' => 'bra', 'BraA09t40182Z' => 'bra', 'C03p04680' => 'bna', 'C03p61540' => 'bna', 'C04p38220' => 'bna', 'C06p22020' => 'bna', 'C08p29470' => 'bna', 'C09p09930' => 'bna', 'CAN.G679.3' => 'can', 'CAN.G874.58' => 'can', 'CAN.G874.59' => 'can', 'CANSAT01G2903' => 'cansat', 'CANSAT54G1112' => 'cansat', 'CARHR164110' => 'chi', 'CARHR203630' => 'chi', 'CARHR278620' => 'chi', 'Carub.0005s2080' => 'cru', 'Carub.0006s0818' => 'cru', 'Carub.0008s2544' => 'cru', 'Ca_15090_v3' => 'car', 'Ca_16929_v3' => 'car', 'CBR_g41367' => 'cbr', 'Cc01_g15590' => 'ccan', 'Cc07_g18050' => 'ccan', 'CDE04G0736' => 'cde', 'CDE04G1571' => 'cde', 'Cfa002830' => 'cfa', 'Cfa016984' => 'cfa', 'Cfa022005' => 'cfa', 'Ciclev10012716m.g' => 'ccl', 'Ciclev10026667m.g' => 'ccl', 'CiPaw.03G128400' => 'cil', 'CiPaw.13G059600' => 'cil', 'ClCG01G015530' => 'cla', 'ClCG10G022870' => 'cla', 'COL.COLO4_01671' => 'col', 'COL.COLO4_14017' => 'col', 'COL.COLO4_32824' => 'col', 'Cpa.g.sc0.26' => 'cpa', 'Cpa.g.sc42.118' => 'cpa', 'Cre02.g108850' => 'cre', 'Cre03.g181350' => 'cre', 'CsaV3_3G032940' => 'csa', 'CsaV3_6G041770' => 'csa', 'CSS0012262' => 'camsi', 'CSS0017576' => 'camsi', 'CSS0030870' => 'camsi', 'CSS0049771' => 'camsi', 'DCAR_001358' => 'dca', 'DCAR_005761' => 'dca', 'DCAR_018592' => 'dca', 'Dinv24771' => 'din', 'Dinv28764' => 'din', 'Dinv30096' => 'din', 'Duzib128G0245' => 'dzi', 'Duzib147G0903' => 'dzi', 'Duzib264G0949' => 'dzi', 'ECA246G3091' => 'eca', 'ECA247G2299' => 'eca', 'EL10Ac1g01201' => 'bvu', 'EL10Ac5g11097' => 'bvu', 'EL10Ac5g11356' => 'bvu', 'EL10Ac5g11449' => 'bvu', 'EL10Ac5g12108' => 'bvu', 'EL10Ac9g21444' => 'bvu', 'Eucgr.A00878' => 'egr', 'Eucgr.H04941' => 'egr', 'FAN02G1608' => 'fan', 'FAN05G2623' => 'fan', 'FAN09G4628' => 'fan', 'FAN11G0976' => 'fan', 'FAN14G5469' => 'fan', 'FAN16G3547' => 'fan', 'FAN21G0823' => 'fan', 'FvH4_3g14560' => 'fve', 'FvH4_6g09150' => 'fve', 'Glyma.04G214500' => 'gma', 'Glyma.06G151700' => 'gma', 'Glyma.11G201700' => 'gma', 'Glyma.18G049200' => 'gma', 'Gohir.A01G176800' => 'ghi', 'Gohir.A08G221638' => 'ghi', 'Gohir.D01G113350' => 'ghi', 'Gohir.D01G167600' => 'ghi', 'Gohir.D08G240100' => 'ghi', 'Gorai.002G138500' => 'gra', 'Gorai.002G208300' => 'gra', 'Gorai.004G255400' => 'gra', 'Gorai.008G092200' => 'gra', 'GSVIVG01026526001' => 'vvi', 'GSVIVG01037929001' => 'vvi', 'HanXRQChr05g0152951' => 'han', 'HanXRQChr08g0231141' => 'han', 'HanXRQChr08g0236341' => 'han', 'Haze_21223' => 'cav', 'Haze_25127' => 'cav', 'Hma1.2p1_0183F.1_g080930' => 'hma', 'HPP92_007570' => 'vpl', 'HPP92_013211' => 'vpl', 'HPP92_013266' => 'vpl', 'HPP92_013271' => 'vpl', 'Hund06402' => 'sun', 'Hund09850' => 'sun', 'Lalb_Chr08g0238481' => 'lal', 'Lalb_Chr11g0068321' => 'lal', 'Lalb_Chr11g0068331' => 'lal', 'Lalb_Chr15g0085571' => 'lal', 'Lj1g0024859' => 'lja', 'Lj1P109T20' => 'lonja', 'Lj2A603T35' => 'lonja', 'Lj6g0000138' => 'lja', 'Lsat_1_v5_gn_3_37780' => 'lsa', 'Lsat_1_v5_gn_9_15461' => 'lsa', 'Manes.08G166500' => 'mes', 'Manes.12G153000' => 'mes', 'Mapoly0013s0204' => 'mpo', 'Mapoly0072s0005' => 'mpo', 'MBI10_g06742_MAGBIO' => 'mbi', 'MBI15_g37412_MAGBIO' => 'mbi', 'MBI15_g47100_MAGBIO' => 'mbi', 'MCO04G031' => 'mco', 'MD01G1012100' => 'mdo', 'MD12G1195700' => 'mdo', 'MD15G1337900' => 'mdo', 'Medtr3g062930' => 'mtr', 'Medtr3g095900' => 'mtr', 'Medtr8g103900' => 'mtr', 'MELO3C008044.2' => 'cme', 'MELO3C009091.2' => 'cme', 'Migut.H00743' => 'egut', 'Migut.N00708' => 'egut', 'MSTRG.12720' => 'ama', 'MSTRG.2664' => 'ama', 'Nitab4.5_0000105g0390' => 'nta', 'Nitab4.5_0000195g0170' => 'nta', 'Nitab4.5_0000250g0020' => 'nta', 'Nitab4.5_0002399g0050' => 'nta', 'Nitab4.5_0002902g0070' => 'nta', 'Nitab4.5_0004141g0030' => 'nta', 'Nn5g28635' => 'nnu', 'Nn8g41044' => 'nnu', 'Oeu000401.1' => 'oeu', 'Oeu037798.1' => 'oeu', 'Oeu038989.2' => 'oeu', 'Oeu047679.1' => 'oeu', 'Os01g0839300' => 'osa', 'Os03g0815400' => 'osa', 'Os05g0460700' => 'osa', 'Peaxi162Scf00105g00116' => 'pax', 'Peaxi162Scf00293g00714' => 'pax', 'Peaxi162Scf00390g00134' => 'pax', 'PGR031G1856' => 'pgr', 'PGR102G3355' => 'pgr', 'PGR142G4456' => 'pgr', 'PGSC0003DMG400014486' => 'stu', 'PGSC0003DMG400027674' => 'stu', 'PGSC0003DMG400027675' => 'stu', 'Phvul.006G082300' => 'pvu', 'Phvul.009G111900' => 'pvu', 'Phvul.009G148700' => 'pvu', 'Potri.005G061700' => 'ptr', 'Potri.006G113500' => 'ptr', 'Potri.007G107100' => 'ptr', 'Potri.016G143100' => 'ptr', 'Pp3c12_10340' => 'ppa', 'Pp3c13_21730' => 'ppa', 'Pp3c16_7040' => 'ppa', 'Pp3c3_12090' => 'ppa', 'PRCOL_00002809' => 'pco', 'PRCOL_00002810' => 'pco', 'PRCOL_00003552' => 'pco', 'Prupe.6G037700' => 'ppe', 'Prupe.6G158000' => 'ppe', 'Prupe.6G300200' => 'ppe', 'Psat5g056880' => 'psa', 'Psat5g146400' => 'psa', 'PSO339G2538' => 'pso', 'PSO384G4509' => 'pso', 'PSO541G1616' => 'pso', 'PSO675G4286' => 'pso', 'PSO675G8066' => 'pso', 'QL01p023470' => 'qlo', 'QL06p029474' => 'qlo', 'RcHm_v2.0_Chr2g0104481' => 'rch', 'RcHm_v2.0_Chr3g0459361' => 'rch', 'RcHm_v2.0_Chr5g0024011' => 'rch', 'RcHm_v2.0_Chr7g0188221' => 'rch', 'Rhsim13G0056900' => 'rsi', 'Sabra04G0159100' => 'sbr', 'Sabra05G0051900' => 'sbr', 'Sabra06G0088400' => 'sbr', 'Sabra07G0087600' => 'sbr', 'SalBow4G0335' => 'sbo', 'SalBow4G0817' => 'sbo', 'Sc04g0003040' => 'sci', 'Sc06g0001400' => 'sci', 'Sed0005738' => 'sed', 'Sed0017028' => 'sed', 'SEGI_31183' => 'sgi', 'SEGI_39786' => 'sgi', 'SGA_v2.0_scaffold120G33007' => 'sas', 'SGA_v2.0_scaffold77G25339' => 'sas', 'SGA_v2.0_scaffold77G25344' => 'sas', 'SHI11445' => 'shi', 'SMO118G0002' => 'smo', 'SMO364G0779' => 'smo', 'Solyc06g082750.3' => 'sly', 'Solyc06g082760.4' => 'sly', 'Solyc08g067950.3' => 'sly', 'Sopen06g034110' => 'spe', 'Sopen06g034120' => 'spe', 'Sopen08g021870' => 'spe', 'Sp2g27710' => 'spa', 'Sp5g08190' => 'spa', 'Sp6g33620' => 'spa', 'TAR376G0897' => 'tar', 'TAR381G1435' => 'tar', 'TAR633G2622' => 'tar', 'THA.LOC104799480' => 'tha', 'THA.LOC104818462' => 'tha', 'THA.LOC104824208' => 'tha', 'Thecc.01G127100' => 'tca', 'Thecc.05G225800' => 'tca', 'Thhalv10005089m.g' => 'esa', 'Thhalv10010668m.g' => 'esa', 'Thhalv10014895m.g' => 'esa', 'TPR.G13826' => 'tpr', 'TPR.G34646' => 'tpr', 'TWI31G0091' => 'twi', 'TWI74G1237' => 'twi', 'TWI75G1050' => 'twi', 'TWI77G0622' => 'twi', 'unitig_26.g10227' => 'ugi', 'unitig_8.g4580' => 'ugi', 'vmacro02859' => 'vma', 'vmacro14290' => 'vma', 'VMungo0540G2320' => 'vmu', 'VMungo0647G1804' => 'vmu', 'VMungo1309G0562' => 'vmu', 'Zm00001eb212080' => 'zma', 'Zm00001eb368030' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002254', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002254' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002254', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '299', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002254' ) ), 'genes' => array( 'A03p04230' => 'bna', 'A04p05530' => 'bna', 'A06p31380' => 'bna', 'A07p22040' => 'bna', 'A09p08760' => 'bna', 'A09p47210' => 'bna', 'Aa31LG1G17310' => 'aar', 'Aa31LG3G17330' => 'aar', 'Aa31LG7G5710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4427' => 'aag', 'Actinidia06650' => 'ach', 'Actinidia11641' => 'ach', 'Actinidia23145' => 'ach', 'Actinidia23146' => 'ach', 'Ah.01g009370' => 'amhyb', 'AL5G35250' => 'aly', 'AL6G20170' => 'aly', 'AL8G42060' => 'aly', 'Aqoxy5G00323' => 'aox', 'Aqoxy7G00509' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0WC7DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KW32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FM41R7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNHU3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1TEIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZPA39L' => 'arhy', 'AT3G54210' => 'ath', 'AT5G09770' => 'ath', 'AT5G64650' => 'ath', 'ATR0681G323' => 'atr', 'ATR1101G029' => 'atr', 'ATR1127G028' => 'atr', 'Atru.chr4.828' => 'acertr', 'Atru.chr8.28' => 'acertr', 'AUR62008494' => 'cqu', 'AUR62010099' => 'cqu', 'AUR62013095' => 'cqu', 'AUR62021595' => 'cqu', 'BcaB01g05562' => 'bca', 'BcaB01g05660' => 'bca', 'BcaB02g07743' => 'bca', 'BcaB04g19981' => 'bca', 'BcaC02g09080' => 'bca', 'BcaC04g23302' => 'bca', 'BcaC07g39763' => 'bca', 'BcaC08g44675' => 'bca', 'BolC3t13002H' => 'bol', 'BolC3t13004H' => 'bol', 'BolC3t18414H' => 'bol', 'BolC4t25397H' => 'bol', 'BolC6t37390H' => 'bol', 'BolC8t50549H' => 'bol', 'BolC9t53900H' => 'bol', 'BraA03t09768Z' => 'bra', 'BraA04t16254Z' => 'bra', 'BraA06t26080Z' => 'bra', 'BraA07t29887Z' => 'bra', 'BraA09t36526Z' => 'bra', 'BraA09t40182Z' => 'bra', 'C03p04680' => 'bna', 'C03p61540' => 'bna', 'C04p38220' => 'bna', 'C06p22020' => 'bna', 'C08p29470' => 'bna', 'C09p09930' => 'bna', 'CAN.G679.3' => 'can', 'CAN.G874.58' => 'can', 'CAN.G874.59' => 'can', 'CANSAT01G2903' => 'cansat', 'CANSAT54G1112' => 'cansat', 'CARHR164110' => 'chi', 'CARHR203630' => 'chi', 'CARHR278620' => 'chi', 'Carub.0005s2080' => 'cru', 'Carub.0006s0818' => 'cru', 'Carub.0008s2544' => 'cru', 'Ca_15090_v3' => 'car', 'Ca_16929_v3' => 'car', 'CBR_g41367' => 'cbr', 'Cc01_g15590' => 'ccan', 'Cc07_g18050' => 'ccan', 'CDE04G0736' => 'cde', 'CDE04G1571' => 'cde', 'Cfa002830' => 'cfa', 'Cfa016984' => 'cfa', 'Cfa022005' => 'cfa', 'Ciclev10012716m.g' => 'ccl', 'Ciclev10026667m.g' => 'ccl', 'CiPaw.03G128400' => 'cil', 'CiPaw.13G059600' => 'cil', 'ClCG01G015530' => 'cla', 'ClCG10G022870' => 'cla', 'COL.COLO4_01671' => 'col', 'COL.COLO4_14017' => 'col', 'COL.COLO4_32824' => 'col', 'Cpa.g.sc0.26' => 'cpa', 'Cpa.g.sc42.118' => 'cpa', 'Cre02.g108850' => 'cre', 'Cre03.g181350' => 'cre', 'CsaV3_3G032940' => 'csa', 'CsaV3_6G041770' => 'csa', 'CSS0012262' => 'camsi', 'CSS0017576' => 'camsi', 'CSS0030870' => 'camsi', 'CSS0049771' => 'camsi', 'DCAR_001358' => 'dca', 'DCAR_005761' => 'dca', 'DCAR_018592' => 'dca', 'Dinv24771' => 'din', 'Dinv28764' => 'din', 'Dinv30096' => 'din', 'Duzib128G0245' => 'dzi', 'Duzib147G0903' => 'dzi', 'Duzib264G0949' => 'dzi', 'ECA246G3091' => 'eca', 'ECA247G2299' => 'eca', 'EL10Ac1g01201' => 'bvu', 'EL10Ac5g11097' => 'bvu', 'EL10Ac5g11356' => 'bvu', 'EL10Ac5g11449' => 'bvu', 'EL10Ac5g12108' => 'bvu', 'EL10Ac9g21444' => 'bvu', 'Eucgr.A00878' => 'egr', 'Eucgr.H04941' => 'egr', 'FAN02G1608' => 'fan', 'FAN05G2623' => 'fan', 'FAN09G4628' => 'fan', 'FAN11G0976' => 'fan', 'FAN14G5469' => 'fan', 'FAN16G3547' => 'fan', 'FAN21G0823' => 'fan', 'FvH4_3g14560' => 'fve', 'FvH4_6g09150' => 'fve', 'Glyma.04G214500' => 'gma', 'Glyma.06G151700' => 'gma', 'Glyma.11G201700' => 'gma', 'Glyma.18G049200' => 'gma', 'Gohir.A01G176800' => 'ghi', 'Gohir.A08G221638' => 'ghi', 'Gohir.D01G113350' => 'ghi', 'Gohir.D01G167600' => 'ghi', 'Gohir.D08G240100' => 'ghi', 'Gorai.002G138500' => 'gra', 'Gorai.002G208300' => 'gra', 'Gorai.004G255400' => 'gra', 'Gorai.008G092200' => 'gra', 'GSVIVG01026526001' => 'vvi', 'GSVIVG01037929001' => 'vvi', 'HanXRQChr05g0152951' => 'han', 'HanXRQChr08g0231141' => 'han', 'HanXRQChr08g0236341' => 'han', 'Haze_21223' => 'cav', 'Haze_25127' => 'cav', 'Hma1.2p1_0183F.1_g080930' => 'hma', 'HPP92_007570' => 'vpl', 'HPP92_013211' => 'vpl', 'HPP92_013266' => 'vpl', 'HPP92_013271' => 'vpl', 'Hund06402' => 'sun', 'Hund09850' => 'sun', 'Lalb_Chr08g0238481' => 'lal', 'Lalb_Chr11g0068321' => 'lal', 'Lalb_Chr11g0068331' => 'lal', 'Lalb_Chr15g0085571' => 'lal', 'Lj1g0024859' => 'lja', 'Lj1P109T20' => 'lonja', 'Lj2A603T35' => 'lonja', 'Lj6g0000138' => 'lja', 'Lsat_1_v5_gn_3_37780' => 'lsa', 'Lsat_1_v5_gn_9_15461' => 'lsa', 'Manes.08G166500' => 'mes', 'Manes.12G153000' => 'mes', 'Mapoly0013s0204' => 'mpo', 'Mapoly0072s0005' => 'mpo', 'MBI10_g06742_MAGBIO' => 'mbi', 'MBI15_g37412_MAGBIO' => 'mbi', 'MBI15_g47100_MAGBIO' => 'mbi', 'MCO04G031' => 'mco', 'MD01G1012100' => 'mdo', 'MD12G1195700' => 'mdo', 'MD15G1337900' => 'mdo', 'Medtr3g062930' => 'mtr', 'Medtr3g095900' => 'mtr', 'Medtr8g103900' => 'mtr', 'MELO3C008044.2' => 'cme', 'MELO3C009091.2' => 'cme', 'Migut.H00743' => 'egut', 'Migut.N00708' => 'egut', 'MSTRG.12720' => 'ama', 'MSTRG.2664' => 'ama', 'Nitab4.5_0000105g0390' => 'nta', 'Nitab4.5_0000195g0170' => 'nta', 'Nitab4.5_0000250g0020' => 'nta', 'Nitab4.5_0002399g0050' => 'nta', 'Nitab4.5_0002902g0070' => 'nta', 'Nitab4.5_0004141g0030' => 'nta', 'Nn5g28635' => 'nnu', 'Nn8g41044' => 'nnu', 'Oeu000401.1' => 'oeu', 'Oeu037798.1' => 'oeu', 'Oeu038989.2' => 'oeu', 'Oeu047679.1' => 'oeu', 'Os01g0839300' => 'osa', 'Os03g0815400' => 'osa', 'Os05g0460700' => 'osa', 'Peaxi162Scf00105g00116' => 'pax', 'Peaxi162Scf00293g00714' => 'pax', 'Peaxi162Scf00390g00134' => 'pax', 'PGR031G1856' => 'pgr', 'PGR102G3355' => 'pgr', 'PGR142G4456' => 'pgr', 'PGSC0003DMG400014486' => 'stu', 'PGSC0003DMG400027674' => 'stu', 'PGSC0003DMG400027675' => 'stu', 'Phvul.006G082300' => 'pvu', 'Phvul.009G111900' => 'pvu', 'Phvul.009G148700' => 'pvu', 'Potri.005G061700' => 'ptr', 'Potri.006G113500' => 'ptr', 'Potri.007G107100' => 'ptr', 'Potri.016G143100' => 'ptr', 'Pp3c12_10340' => 'ppa', 'Pp3c13_21730' => 'ppa', 'Pp3c16_7040' => 'ppa', 'Pp3c3_12090' => 'ppa', 'PRCOL_00002809' => 'pco', 'PRCOL_00002810' => 'pco', 'PRCOL_00003552' => 'pco', 'Prupe.6G037700' => 'ppe', 'Prupe.6G158000' => 'ppe', 'Prupe.6G300200' => 'ppe', 'Psat5g056880' => 'psa', 'Psat5g146400' => 'psa', 'PSO339G2538' => 'pso', 'PSO384G4509' => 'pso', 'PSO541G1616' => 'pso', 'PSO675G4286' => 'pso', 'PSO675G8066' => 'pso', 'QL01p023470' => 'qlo', 'QL06p029474' => 'qlo', 'RcHm_v2.0_Chr2g0104481' => 'rch', 'RcHm_v2.0_Chr3g0459361' => 'rch', 'RcHm_v2.0_Chr5g0024011' => 'rch', 'RcHm_v2.0_Chr7g0188221' => 'rch', 'Rhsim13G0056900' => 'rsi', 'Sabra04G0159100' => 'sbr', 'Sabra05G0051900' => 'sbr', 'Sabra06G0088400' => 'sbr', 'Sabra07G0087600' => 'sbr', 'SalBow4G0335' => 'sbo', 'SalBow4G0817' => 'sbo', 'Sc04g0003040' => 'sci', 'Sc06g0001400' => 'sci', 'Sed0005738' => 'sed', 'Sed0017028' => 'sed', 'SEGI_31183' => 'sgi', 'SEGI_39786' => 'sgi', 'SGA_v2.0_scaffold120G33007' => 'sas', 'SGA_v2.0_scaffold77G25339' => 'sas', 'SGA_v2.0_scaffold77G25344' => 'sas', 'SHI11445' => 'shi', 'SMO118G0002' => 'smo', 'SMO364G0779' => 'smo', 'Solyc06g082750.3' => 'sly', 'Solyc06g082760.4' => 'sly', 'Solyc08g067950.3' => 'sly', 'Sopen06g034110' => 'spe', 'Sopen06g034120' => 'spe', 'Sopen08g021870' => 'spe', 'Sp2g27710' => 'spa', 'Sp5g08190' => 'spa', 'Sp6g33620' => 'spa', 'TAR376G0897' => 'tar', 'TAR381G1435' => 'tar', 'TAR633G2622' => 'tar', 'THA.LOC104799480' => 'tha', 'THA.LOC104818462' => 'tha', 'THA.LOC104824208' => 'tha', 'Thecc.01G127100' => 'tca', 'Thecc.05G225800' => 'tca', 'Thhalv10005089m.g' => 'esa', 'Thhalv10010668m.g' => 'esa', 'Thhalv10014895m.g' => 'esa', 'TPR.G13826' => 'tpr', 'TPR.G34646' => 'tpr', 'TWI31G0091' => 'twi', 'TWI74G1237' => 'twi', 'TWI75G1050' => 'twi', 'TWI77G0622' => 'twi', 'unitig_26.g10227' => 'ugi', 'unitig_8.g4580' => 'ugi', 'vmacro02859' => 'vma', 'vmacro14290' => 'vma', 'VMungo0540G2320' => 'vmu', 'VMungo0647G1804' => 'vmu', 'VMungo1309G0562' => 'vmu', 'Zm00001eb212080' => 'zma', 'Zm00001eb368030' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002254' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002254' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002254' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002254' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002254', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '299', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p04230' => 'bna', 'A04p05530' => 'bna', 'A06p31380' => 'bna', 'A07p22040' => 'bna', 'A09p08760' => 'bna', 'A09p47210' => 'bna', 'Aa31LG1G17310' => 'aar', 'Aa31LG3G17330' => 'aar', 'Aa31LG7G5710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4427' => 'aag', 'Actinidia06650' => 'ach', 'Actinidia11641' => 'ach', 'Actinidia23145' => 'ach', 'Actinidia23146' => 'ach', 'Ah.01g009370' => 'amhyb', 'AL5G35250' => 'aly', 'AL6G20170' => 'aly', 'AL8G42060' => 'aly', 'Aqoxy5G00323' => 'aox', 'Aqoxy7G00509' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0WC7DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KW32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FM41R7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNHU3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1TEIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZPA39L' => 'arhy', 'AT3G54210' => 'ath', 'AT5G09770' => 'ath', 'AT5G64650' => 'ath', 'ATR0681G323' => 'atr', 'ATR1101G029' => 'atr', 'ATR1127G028' => 'atr', 'Atru.chr4.828' => 'acertr', 'Atru.chr8.28' => 'acertr', 'AUR62008494' => 'cqu', 'AUR62010099' => 'cqu', 'AUR62013095' => 'cqu', 'AUR62021595' => 'cqu', 'BcaB01g05562' => 'bca', 'BcaB01g05660' => 'bca', 'BcaB02g07743' => 'bca', 'BcaB04g19981' => 'bca', 'BcaC02g09080' => 'bca', 'BcaC04g23302' => 'bca', 'BcaC07g39763' => 'bca', 'BcaC08g44675' => 'bca', 'BolC3t13002H' => 'bol', 'BolC3t13004H' => 'bol', 'BolC3t18414H' => 'bol', 'BolC4t25397H' => 'bol', 'BolC6t37390H' => 'bol', 'BolC8t50549H' => 'bol', 'BolC9t53900H' => 'bol', 'BraA03t09768Z' => 'bra', 'BraA04t16254Z' => 'bra', 'BraA06t26080Z' => 'bra', 'BraA07t29887Z' => 'bra', 'BraA09t36526Z' => 'bra', 'BraA09t40182Z' => 'bra', 'C03p04680' => 'bna', 'C03p61540' => 'bna', 'C04p38220' => 'bna', 'C06p22020' => 'bna', 'C08p29470' => 'bna', 'C09p09930' => 'bna', 'CAN.G679.3' => 'can', 'CAN.G874.58' => 'can', 'CAN.G874.59' => 'can', 'CANSAT01G2903' => 'cansat', 'CANSAT54G1112' => 'cansat', 'CARHR164110' => 'chi', 'CARHR203630' => 'chi', 'CARHR278620' => 'chi', 'Carub.0005s2080' => 'cru', 'Carub.0006s0818' => 'cru', 'Carub.0008s2544' => 'cru', 'Ca_15090_v3' => 'car', 'Ca_16929_v3' => 'car', 'CBR_g41367' => 'cbr', 'Cc01_g15590' => 'ccan', 'Cc07_g18050' => 'ccan', 'CDE04G0736' => 'cde', 'CDE04G1571' => 'cde', 'Cfa002830' => 'cfa', 'Cfa016984' => 'cfa', 'Cfa022005' => 'cfa', 'Ciclev10012716m.g' => 'ccl', 'Ciclev10026667m.g' => 'ccl', 'CiPaw.03G128400' => 'cil', 'CiPaw.13G059600' => 'cil', 'ClCG01G015530' => 'cla', 'ClCG10G022870' => 'cla', 'COL.COLO4_01671' => 'col', 'COL.COLO4_14017' => 'col', 'COL.COLO4_32824' => 'col', 'Cpa.g.sc0.26' => 'cpa', 'Cpa.g.sc42.118' => 'cpa', 'Cre02.g108850' => 'cre', 'Cre03.g181350' => 'cre', 'CsaV3_3G032940' => 'csa', 'CsaV3_6G041770' => 'csa', 'CSS0012262' => 'camsi', 'CSS0017576' => 'camsi', 'CSS0030870' => 'camsi', 'CSS0049771' => 'camsi', 'DCAR_001358' => 'dca', 'DCAR_005761' => 'dca', 'DCAR_018592' => 'dca', 'Dinv24771' => 'din', 'Dinv28764' => 'din', 'Dinv30096' => 'din', 'Duzib128G0245' => 'dzi', 'Duzib147G0903' => 'dzi', 'Duzib264G0949' => 'dzi', 'ECA246G3091' => 'eca', 'ECA247G2299' => 'eca', 'EL10Ac1g01201' => 'bvu', 'EL10Ac5g11097' => 'bvu', 'EL10Ac5g11356' => 'bvu', 'EL10Ac5g11449' => 'bvu', 'EL10Ac5g12108' => 'bvu', 'EL10Ac9g21444' => 'bvu', 'Eucgr.A00878' => 'egr', 'Eucgr.H04941' => 'egr', 'FAN02G1608' => 'fan', 'FAN05G2623' => 'fan', 'FAN09G4628' => 'fan', 'FAN11G0976' => 'fan', 'FAN14G5469' => 'fan', 'FAN16G3547' => 'fan', 'FAN21G0823' => 'fan', 'FvH4_3g14560' => 'fve', 'FvH4_6g09150' => 'fve', 'Glyma.04G214500' => 'gma', 'Glyma.06G151700' => 'gma', 'Glyma.11G201700' => 'gma', 'Glyma.18G049200' => 'gma', 'Gohir.A01G176800' => 'ghi', 'Gohir.A08G221638' => 'ghi', 'Gohir.D01G113350' => 'ghi', 'Gohir.D01G167600' => 'ghi', 'Gohir.D08G240100' => 'ghi', 'Gorai.002G138500' => 'gra', 'Gorai.002G208300' => 'gra', 'Gorai.004G255400' => 'gra', 'Gorai.008G092200' => 'gra', 'GSVIVG01026526001' => 'vvi', 'GSVIVG01037929001' => 'vvi', 'HanXRQChr05g0152951' => 'han', 'HanXRQChr08g0231141' => 'han', 'HanXRQChr08g0236341' => 'han', 'Haze_21223' => 'cav', 'Haze_25127' => 'cav', 'Hma1.2p1_0183F.1_g080930' => 'hma', 'HPP92_007570' => 'vpl', 'HPP92_013211' => 'vpl', 'HPP92_013266' => 'vpl', 'HPP92_013271' => 'vpl', 'Hund06402' => 'sun', 'Hund09850' => 'sun', 'Lalb_Chr08g0238481' => 'lal', 'Lalb_Chr11g0068321' => 'lal', 'Lalb_Chr11g0068331' => 'lal', 'Lalb_Chr15g0085571' => 'lal', 'Lj1g0024859' => 'lja', 'Lj1P109T20' => 'lonja', 'Lj2A603T35' => 'lonja', 'Lj6g0000138' => 'lja', 'Lsat_1_v5_gn_3_37780' => 'lsa', 'Lsat_1_v5_gn_9_15461' => 'lsa', 'Manes.08G166500' => 'mes', 'Manes.12G153000' => 'mes', 'Mapoly0013s0204' => 'mpo', 'Mapoly0072s0005' => 'mpo', 'MBI10_g06742_MAGBIO' => 'mbi', 'MBI15_g37412_MAGBIO' => 'mbi', 'MBI15_g47100_MAGBIO' => 'mbi', 'MCO04G031' => 'mco', 'MD01G1012100' => 'mdo', 'MD12G1195700' => 'mdo', 'MD15G1337900' => 'mdo', 'Medtr3g062930' => 'mtr', 'Medtr3g095900' => 'mtr', 'Medtr8g103900' => 'mtr', 'MELO3C008044.2' => 'cme', 'MELO3C009091.2' => 'cme', 'Migut.H00743' => 'egut', 'Migut.N00708' => 'egut', 'MSTRG.12720' => 'ama', 'MSTRG.2664' => 'ama', 'Nitab4.5_0000105g0390' => 'nta', 'Nitab4.5_0000195g0170' => 'nta', 'Nitab4.5_0000250g0020' => 'nta', 'Nitab4.5_0002399g0050' => 'nta', 'Nitab4.5_0002902g0070' => 'nta', 'Nitab4.5_0004141g0030' => 'nta', 'Nn5g28635' => 'nnu', 'Nn8g41044' => 'nnu', 'Oeu000401.1' => 'oeu', 'Oeu037798.1' => 'oeu', 'Oeu038989.2' => 'oeu', 'Oeu047679.1' => 'oeu', 'Os01g0839300' => 'osa', 'Os03g0815400' => 'osa', 'Os05g0460700' => 'osa', 'Peaxi162Scf00105g00116' => 'pax', 'Peaxi162Scf00293g00714' => 'pax', 'Peaxi162Scf00390g00134' => 'pax', 'PGR031G1856' => 'pgr', 'PGR102G3355' => 'pgr', 'PGR142G4456' => 'pgr', 'PGSC0003DMG400014486' => 'stu', 'PGSC0003DMG400027674' => 'stu', 'PGSC0003DMG400027675' => 'stu', 'Phvul.006G082300' => 'pvu', 'Phvul.009G111900' => 'pvu', 'Phvul.009G148700' => 'pvu', 'Potri.005G061700' => 'ptr', 'Potri.006G113500' => 'ptr', 'Potri.007G107100' => 'ptr', 'Potri.016G143100' => 'ptr', 'Pp3c12_10340' => 'ppa', 'Pp3c13_21730' => 'ppa', 'Pp3c16_7040' => 'ppa', 'Pp3c3_12090' => 'ppa', 'PRCOL_00002809' => 'pco', 'PRCOL_00002810' => 'pco', 'PRCOL_00003552' => 'pco', 'Prupe.6G037700' => 'ppe', 'Prupe.6G158000' => 'ppe', 'Prupe.6G300200' => 'ppe', 'Psat5g056880' => 'psa', 'Psat5g146400' => 'psa', 'PSO339G2538' => 'pso', 'PSO384G4509' => 'pso', 'PSO541G1616' => 'pso', 'PSO675G4286' => 'pso', 'PSO675G8066' => 'pso', 'QL01p023470' => 'qlo', 'QL06p029474' => 'qlo', 'RcHm_v2.0_Chr2g0104481' => 'rch', 'RcHm_v2.0_Chr3g0459361' => 'rch', 'RcHm_v2.0_Chr5g0024011' => 'rch', 'RcHm_v2.0_Chr7g0188221' => 'rch', 'Rhsim13G0056900' => 'rsi', 'Sabra04G0159100' => 'sbr', 'Sabra05G0051900' => 'sbr', 'Sabra06G0088400' => 'sbr', 'Sabra07G0087600' => 'sbr', 'SalBow4G0335' => 'sbo', 'SalBow4G0817' => 'sbo', 'Sc04g0003040' => 'sci', 'Sc06g0001400' => 'sci', 'Sed0005738' => 'sed', 'Sed0017028' => 'sed', 'SEGI_31183' => 'sgi', 'SEGI_39786' => 'sgi', 'SGA_v2.0_scaffold120G33007' => 'sas', 'SGA_v2.0_scaffold77G25339' => 'sas', 'SGA_v2.0_scaffold77G25344' => 'sas', 'SHI11445' => 'shi', 'SMO118G0002' => 'smo', 'SMO364G0779' => 'smo', 'Solyc06g082750.3' => 'sly', 'Solyc06g082760.4' => 'sly', 'Solyc08g067950.3' => 'sly', 'Sopen06g034110' => 'spe', 'Sopen06g034120' => 'spe', 'Sopen08g021870' => 'spe', 'Sp2g27710' => 'spa', 'Sp5g08190' => 'spa', 'Sp6g33620' => 'spa', 'TAR376G0897' => 'tar', 'TAR381G1435' => 'tar', 'TAR633G2622' => 'tar', 'THA.LOC104799480' => 'tha', 'THA.LOC104818462' => 'tha', 'THA.LOC104824208' => 'tha', 'Thecc.01G127100' => 'tca', 'Thecc.05G225800' => 'tca', 'Thhalv10005089m.g' => 'esa', 'Thhalv10010668m.g' => 'esa', 'Thhalv10014895m.g' => 'esa', 'TPR.G13826' => 'tpr', 'TPR.G34646' => 'tpr', 'TWI31G0091' => 'twi', 'TWI74G1237' => 'twi', 'TWI75G1050' => 'twi', 'TWI77G0622' => 'twi', 'unitig_26.g10227' => 'ugi', 'unitig_8.g4580' => 'ugi', 'vmacro02859' => 'vma', 'vmacro14290' => 'vma', 'VMungo0540G2320' => 'vmu', 'VMungo0647G1804' => 'vmu', 'VMungo1309G0562' => 'vmu', 'Zm00001eb212080' => 'zma', 'Zm00001eb368030' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002254', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002254' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002254', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '299', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002254' ) ), 'genes' => array( 'A03p04230' => 'bna', 'A04p05530' => 'bna', 'A06p31380' => 'bna', 'A07p22040' => 'bna', 'A09p08760' => 'bna', 'A09p47210' => 'bna', 'Aa31LG1G17310' => 'aar', 'Aa31LG3G17330' => 'aar', 'Aa31LG7G5710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4427' => 'aag', 'Actinidia06650' => 'ach', 'Actinidia11641' => 'ach', 'Actinidia23145' => 'ach', 'Actinidia23146' => 'ach', 'Ah.01g009370' => 'amhyb', 'AL5G35250' => 'aly', 'AL6G20170' => 'aly', 'AL8G42060' => 'aly', 'Aqoxy5G00323' => 'aox', 'Aqoxy7G00509' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0WC7DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KW32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FM41R7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNHU3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1TEIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZPA39L' => 'arhy', 'AT3G54210' => 'ath', 'AT5G09770' => 'ath', 'AT5G64650' => 'ath', 'ATR0681G323' => 'atr', 'ATR1101G029' => 'atr', 'ATR1127G028' => 'atr', 'Atru.chr4.828' => 'acertr', 'Atru.chr8.28' => 'acertr', 'AUR62008494' => 'cqu', 'AUR62010099' => 'cqu', 'AUR62013095' => 'cqu', 'AUR62021595' => 'cqu', 'BcaB01g05562' => 'bca', 'BcaB01g05660' => 'bca', 'BcaB02g07743' => 'bca', 'BcaB04g19981' => 'bca', 'BcaC02g09080' => 'bca', 'BcaC04g23302' => 'bca', 'BcaC07g39763' => 'bca', 'BcaC08g44675' => 'bca', 'BolC3t13002H' => 'bol', 'BolC3t13004H' => 'bol', 'BolC3t18414H' => 'bol', 'BolC4t25397H' => 'bol', 'BolC6t37390H' => 'bol', 'BolC8t50549H' => 'bol', 'BolC9t53900H' => 'bol', 'BraA03t09768Z' => 'bra', 'BraA04t16254Z' => 'bra', 'BraA06t26080Z' => 'bra', 'BraA07t29887Z' => 'bra', 'BraA09t36526Z' => 'bra', 'BraA09t40182Z' => 'bra', 'C03p04680' => 'bna', 'C03p61540' => 'bna', 'C04p38220' => 'bna', 'C06p22020' => 'bna', 'C08p29470' => 'bna', 'C09p09930' => 'bna', 'CAN.G679.3' => 'can', 'CAN.G874.58' => 'can', 'CAN.G874.59' => 'can', 'CANSAT01G2903' => 'cansat', 'CANSAT54G1112' => 'cansat', 'CARHR164110' => 'chi', 'CARHR203630' => 'chi', 'CARHR278620' => 'chi', 'Carub.0005s2080' => 'cru', 'Carub.0006s0818' => 'cru', 'Carub.0008s2544' => 'cru', 'Ca_15090_v3' => 'car', 'Ca_16929_v3' => 'car', 'CBR_g41367' => 'cbr', 'Cc01_g15590' => 'ccan', 'Cc07_g18050' => 'ccan', 'CDE04G0736' => 'cde', 'CDE04G1571' => 'cde', 'Cfa002830' => 'cfa', 'Cfa016984' => 'cfa', 'Cfa022005' => 'cfa', 'Ciclev10012716m.g' => 'ccl', 'Ciclev10026667m.g' => 'ccl', 'CiPaw.03G128400' => 'cil', 'CiPaw.13G059600' => 'cil', 'ClCG01G015530' => 'cla', 'ClCG10G022870' => 'cla', 'COL.COLO4_01671' => 'col', 'COL.COLO4_14017' => 'col', 'COL.COLO4_32824' => 'col', 'Cpa.g.sc0.26' => 'cpa', 'Cpa.g.sc42.118' => 'cpa', 'Cre02.g108850' => 'cre', 'Cre03.g181350' => 'cre', 'CsaV3_3G032940' => 'csa', 'CsaV3_6G041770' => 'csa', 'CSS0012262' => 'camsi', 'CSS0017576' => 'camsi', 'CSS0030870' => 'camsi', 'CSS0049771' => 'camsi', 'DCAR_001358' => 'dca', 'DCAR_005761' => 'dca', 'DCAR_018592' => 'dca', 'Dinv24771' => 'din', 'Dinv28764' => 'din', 'Dinv30096' => 'din', 'Duzib128G0245' => 'dzi', 'Duzib147G0903' => 'dzi', 'Duzib264G0949' => 'dzi', 'ECA246G3091' => 'eca', 'ECA247G2299' => 'eca', 'EL10Ac1g01201' => 'bvu', 'EL10Ac5g11097' => 'bvu', 'EL10Ac5g11356' => 'bvu', 'EL10Ac5g11449' => 'bvu', 'EL10Ac5g12108' => 'bvu', 'EL10Ac9g21444' => 'bvu', 'Eucgr.A00878' => 'egr', 'Eucgr.H04941' => 'egr', 'FAN02G1608' => 'fan', 'FAN05G2623' => 'fan', 'FAN09G4628' => 'fan', 'FAN11G0976' => 'fan', 'FAN14G5469' => 'fan', 'FAN16G3547' => 'fan', 'FAN21G0823' => 'fan', 'FvH4_3g14560' => 'fve', 'FvH4_6g09150' => 'fve', 'Glyma.04G214500' => 'gma', 'Glyma.06G151700' => 'gma', 'Glyma.11G201700' => 'gma', 'Glyma.18G049200' => 'gma', 'Gohir.A01G176800' => 'ghi', 'Gohir.A08G221638' => 'ghi', 'Gohir.D01G113350' => 'ghi', 'Gohir.D01G167600' => 'ghi', 'Gohir.D08G240100' => 'ghi', 'Gorai.002G138500' => 'gra', 'Gorai.002G208300' => 'gra', 'Gorai.004G255400' => 'gra', 'Gorai.008G092200' => 'gra', 'GSVIVG01026526001' => 'vvi', 'GSVIVG01037929001' => 'vvi', 'HanXRQChr05g0152951' => 'han', 'HanXRQChr08g0231141' => 'han', 'HanXRQChr08g0236341' => 'han', 'Haze_21223' => 'cav', 'Haze_25127' => 'cav', 'Hma1.2p1_0183F.1_g080930' => 'hma', 'HPP92_007570' => 'vpl', 'HPP92_013211' => 'vpl', 'HPP92_013266' => 'vpl', 'HPP92_013271' => 'vpl', 'Hund06402' => 'sun', 'Hund09850' => 'sun', 'Lalb_Chr08g0238481' => 'lal', 'Lalb_Chr11g0068321' => 'lal', 'Lalb_Chr11g0068331' => 'lal', 'Lalb_Chr15g0085571' => 'lal', 'Lj1g0024859' => 'lja', 'Lj1P109T20' => 'lonja', 'Lj2A603T35' => 'lonja', 'Lj6g0000138' => 'lja', 'Lsat_1_v5_gn_3_37780' => 'lsa', 'Lsat_1_v5_gn_9_15461' => 'lsa', 'Manes.08G166500' => 'mes', 'Manes.12G153000' => 'mes', 'Mapoly0013s0204' => 'mpo', 'Mapoly0072s0005' => 'mpo', 'MBI10_g06742_MAGBIO' => 'mbi', 'MBI15_g37412_MAGBIO' => 'mbi', 'MBI15_g47100_MAGBIO' => 'mbi', 'MCO04G031' => 'mco', 'MD01G1012100' => 'mdo', 'MD12G1195700' => 'mdo', 'MD15G1337900' => 'mdo', 'Medtr3g062930' => 'mtr', 'Medtr3g095900' => 'mtr', 'Medtr8g103900' => 'mtr', 'MELO3C008044.2' => 'cme', 'MELO3C009091.2' => 'cme', 'Migut.H00743' => 'egut', 'Migut.N00708' => 'egut', 'MSTRG.12720' => 'ama', 'MSTRG.2664' => 'ama', 'Nitab4.5_0000105g0390' => 'nta', 'Nitab4.5_0000195g0170' => 'nta', 'Nitab4.5_0000250g0020' => 'nta', 'Nitab4.5_0002399g0050' => 'nta', 'Nitab4.5_0002902g0070' => 'nta', 'Nitab4.5_0004141g0030' => 'nta', 'Nn5g28635' => 'nnu', 'Nn8g41044' => 'nnu', 'Oeu000401.1' => 'oeu', 'Oeu037798.1' => 'oeu', 'Oeu038989.2' => 'oeu', 'Oeu047679.1' => 'oeu', 'Os01g0839300' => 'osa', 'Os03g0815400' => 'osa', 'Os05g0460700' => 'osa', 'Peaxi162Scf00105g00116' => 'pax', 'Peaxi162Scf00293g00714' => 'pax', 'Peaxi162Scf00390g00134' => 'pax', 'PGR031G1856' => 'pgr', 'PGR102G3355' => 'pgr', 'PGR142G4456' => 'pgr', 'PGSC0003DMG400014486' => 'stu', 'PGSC0003DMG400027674' => 'stu', 'PGSC0003DMG400027675' => 'stu', 'Phvul.006G082300' => 'pvu', 'Phvul.009G111900' => 'pvu', 'Phvul.009G148700' => 'pvu', 'Potri.005G061700' => 'ptr', 'Potri.006G113500' => 'ptr', 'Potri.007G107100' => 'ptr', 'Potri.016G143100' => 'ptr', 'Pp3c12_10340' => 'ppa', 'Pp3c13_21730' => 'ppa', 'Pp3c16_7040' => 'ppa', 'Pp3c3_12090' => 'ppa', 'PRCOL_00002809' => 'pco', 'PRCOL_00002810' => 'pco', 'PRCOL_00003552' => 'pco', 'Prupe.6G037700' => 'ppe', 'Prupe.6G158000' => 'ppe', 'Prupe.6G300200' => 'ppe', 'Psat5g056880' => 'psa', 'Psat5g146400' => 'psa', 'PSO339G2538' => 'pso', 'PSO384G4509' => 'pso', 'PSO541G1616' => 'pso', 'PSO675G4286' => 'pso', 'PSO675G8066' => 'pso', 'QL01p023470' => 'qlo', 'QL06p029474' => 'qlo', 'RcHm_v2.0_Chr2g0104481' => 'rch', 'RcHm_v2.0_Chr3g0459361' => 'rch', 'RcHm_v2.0_Chr5g0024011' => 'rch', 'RcHm_v2.0_Chr7g0188221' => 'rch', 'Rhsim13G0056900' => 'rsi', 'Sabra04G0159100' => 'sbr', 'Sabra05G0051900' => 'sbr', 'Sabra06G0088400' => 'sbr', 'Sabra07G0087600' => 'sbr', 'SalBow4G0335' => 'sbo', 'SalBow4G0817' => 'sbo', 'Sc04g0003040' => 'sci', 'Sc06g0001400' => 'sci', 'Sed0005738' => 'sed', 'Sed0017028' => 'sed', 'SEGI_31183' => 'sgi', 'SEGI_39786' => 'sgi', 'SGA_v2.0_scaffold120G33007' => 'sas', 'SGA_v2.0_scaffold77G25339' => 'sas', 'SGA_v2.0_scaffold77G25344' => 'sas', 'SHI11445' => 'shi', 'SMO118G0002' => 'smo', 'SMO364G0779' => 'smo', 'Solyc06g082750.3' => 'sly', 'Solyc06g082760.4' => 'sly', 'Solyc08g067950.3' => 'sly', 'Sopen06g034110' => 'spe', 'Sopen06g034120' => 'spe', 'Sopen08g021870' => 'spe', 'Sp2g27710' => 'spa', 'Sp5g08190' => 'spa', 'Sp6g33620' => 'spa', 'TAR376G0897' => 'tar', 'TAR381G1435' => 'tar', 'TAR633G2622' => 'tar', 'THA.LOC104799480' => 'tha', 'THA.LOC104818462' => 'tha', 'THA.LOC104824208' => 'tha', 'Thecc.01G127100' => 'tca', 'Thecc.05G225800' => 'tca', 'Thhalv10005089m.g' => 'esa', 'Thhalv10010668m.g' => 'esa', 'Thhalv10014895m.g' => 'esa', 'TPR.G13826' => 'tpr', 'TPR.G34646' => 'tpr', 'TWI31G0091' => 'twi', 'TWI74G1237' => 'twi', 'TWI75G1050' => 'twi', 'TWI77G0622' => 'twi', 'unitig_26.g10227' => 'ugi', 'unitig_8.g4580' => 'ugi', 'vmacro02859' => 'vma', 'vmacro14290' => 'vma', 'VMungo0540G2320' => 'vmu', 'VMungo0647G1804' => 'vmu', 'VMungo1309G0562' => 'vmu', 'Zm00001eb212080' => 'zma', 'Zm00001eb368030' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002254' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002254' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002254' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002254' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002254', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '299', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p04230' => 'bna', 'A04p05530' => 'bna', 'A06p31380' => 'bna', 'A07p22040' => 'bna', 'A09p08760' => 'bna', 'A09p47210' => 'bna', 'Aa31LG1G17310' => 'aar', 'Aa31LG3G17330' => 'aar', 'Aa31LG7G5710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4427' => 'aag', 'Actinidia06650' => 'ach', 'Actinidia11641' => 'ach', 'Actinidia23145' => 'ach', 'Actinidia23146' => 'ach', 'Ah.01g009370' => 'amhyb', 'AL5G35250' => 'aly', 'AL6G20170' => 'aly', 'AL8G42060' => 'aly', 'Aqoxy5G00323' => 'aox', 'Aqoxy7G00509' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0WC7DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KW32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FM41R7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNHU3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1TEIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZPA39L' => 'arhy', 'AT3G54210' => 'ath', 'AT5G09770' => 'ath', 'AT5G64650' => 'ath', 'ATR0681G323' => 'atr', 'ATR1101G029' => 'atr', 'ATR1127G028' => 'atr', 'Atru.chr4.828' => 'acertr', 'Atru.chr8.28' => 'acertr', 'AUR62008494' => 'cqu', 'AUR62010099' => 'cqu', 'AUR62013095' => 'cqu', 'AUR62021595' => 'cqu', 'BcaB01g05562' => 'bca', 'BcaB01g05660' => 'bca', 'BcaB02g07743' => 'bca', 'BcaB04g19981' => 'bca', 'BcaC02g09080' => 'bca', 'BcaC04g23302' => 'bca', 'BcaC07g39763' => 'bca', 'BcaC08g44675' => 'bca', 'BolC3t13002H' => 'bol', 'BolC3t13004H' => 'bol', 'BolC3t18414H' => 'bol', 'BolC4t25397H' => 'bol', 'BolC6t37390H' => 'bol', 'BolC8t50549H' => 'bol', 'BolC9t53900H' => 'bol', 'BraA03t09768Z' => 'bra', 'BraA04t16254Z' => 'bra', 'BraA06t26080Z' => 'bra', 'BraA07t29887Z' => 'bra', 'BraA09t36526Z' => 'bra', 'BraA09t40182Z' => 'bra', 'C03p04680' => 'bna', 'C03p61540' => 'bna', 'C04p38220' => 'bna', 'C06p22020' => 'bna', 'C08p29470' => 'bna', 'C09p09930' => 'bna', 'CAN.G679.3' => 'can', 'CAN.G874.58' => 'can', 'CAN.G874.59' => 'can', 'CANSAT01G2903' => 'cansat', 'CANSAT54G1112' => 'cansat', 'CARHR164110' => 'chi', 'CARHR203630' => 'chi', 'CARHR278620' => 'chi', 'Carub.0005s2080' => 'cru', 'Carub.0006s0818' => 'cru', 'Carub.0008s2544' => 'cru', 'Ca_15090_v3' => 'car', 'Ca_16929_v3' => 'car', 'CBR_g41367' => 'cbr', 'Cc01_g15590' => 'ccan', 'Cc07_g18050' => 'ccan', 'CDE04G0736' => 'cde', 'CDE04G1571' => 'cde', 'Cfa002830' => 'cfa', 'Cfa016984' => 'cfa', 'Cfa022005' => 'cfa', 'Ciclev10012716m.g' => 'ccl', 'Ciclev10026667m.g' => 'ccl', 'CiPaw.03G128400' => 'cil', 'CiPaw.13G059600' => 'cil', 'ClCG01G015530' => 'cla', 'ClCG10G022870' => 'cla', 'COL.COLO4_01671' => 'col', 'COL.COLO4_14017' => 'col', 'COL.COLO4_32824' => 'col', 'Cpa.g.sc0.26' => 'cpa', 'Cpa.g.sc42.118' => 'cpa', 'Cre02.g108850' => 'cre', 'Cre03.g181350' => 'cre', 'CsaV3_3G032940' => 'csa', 'CsaV3_6G041770' => 'csa', 'CSS0012262' => 'camsi', 'CSS0017576' => 'camsi', 'CSS0030870' => 'camsi', 'CSS0049771' => 'camsi', 'DCAR_001358' => 'dca', 'DCAR_005761' => 'dca', 'DCAR_018592' => 'dca', 'Dinv24771' => 'din', 'Dinv28764' => 'din', 'Dinv30096' => 'din', 'Duzib128G0245' => 'dzi', 'Duzib147G0903' => 'dzi', 'Duzib264G0949' => 'dzi', 'ECA246G3091' => 'eca', 'ECA247G2299' => 'eca', 'EL10Ac1g01201' => 'bvu', 'EL10Ac5g11097' => 'bvu', 'EL10Ac5g11356' => 'bvu', 'EL10Ac5g11449' => 'bvu', 'EL10Ac5g12108' => 'bvu', 'EL10Ac9g21444' => 'bvu', 'Eucgr.A00878' => 'egr', 'Eucgr.H04941' => 'egr', 'FAN02G1608' => 'fan', 'FAN05G2623' => 'fan', 'FAN09G4628' => 'fan', 'FAN11G0976' => 'fan', 'FAN14G5469' => 'fan', 'FAN16G3547' => 'fan', 'FAN21G0823' => 'fan', 'FvH4_3g14560' => 'fve', 'FvH4_6g09150' => 'fve', 'Glyma.04G214500' => 'gma', 'Glyma.06G151700' => 'gma', 'Glyma.11G201700' => 'gma', 'Glyma.18G049200' => 'gma', 'Gohir.A01G176800' => 'ghi', 'Gohir.A08G221638' => 'ghi', 'Gohir.D01G113350' => 'ghi', 'Gohir.D01G167600' => 'ghi', 'Gohir.D08G240100' => 'ghi', 'Gorai.002G138500' => 'gra', 'Gorai.002G208300' => 'gra', 'Gorai.004G255400' => 'gra', 'Gorai.008G092200' => 'gra', 'GSVIVG01026526001' => 'vvi', 'GSVIVG01037929001' => 'vvi', 'HanXRQChr05g0152951' => 'han', 'HanXRQChr08g0231141' => 'han', 'HanXRQChr08g0236341' => 'han', 'Haze_21223' => 'cav', 'Haze_25127' => 'cav', 'Hma1.2p1_0183F.1_g080930' => 'hma', 'HPP92_007570' => 'vpl', 'HPP92_013211' => 'vpl', 'HPP92_013266' => 'vpl', 'HPP92_013271' => 'vpl', 'Hund06402' => 'sun', 'Hund09850' => 'sun', 'Lalb_Chr08g0238481' => 'lal', 'Lalb_Chr11g0068321' => 'lal', 'Lalb_Chr11g0068331' => 'lal', 'Lalb_Chr15g0085571' => 'lal', 'Lj1g0024859' => 'lja', 'Lj1P109T20' => 'lonja', 'Lj2A603T35' => 'lonja', 'Lj6g0000138' => 'lja', 'Lsat_1_v5_gn_3_37780' => 'lsa', 'Lsat_1_v5_gn_9_15461' => 'lsa', 'Manes.08G166500' => 'mes', 'Manes.12G153000' => 'mes', 'Mapoly0013s0204' => 'mpo', 'Mapoly0072s0005' => 'mpo', 'MBI10_g06742_MAGBIO' => 'mbi', 'MBI15_g37412_MAGBIO' => 'mbi', 'MBI15_g47100_MAGBIO' => 'mbi', 'MCO04G031' => 'mco', 'MD01G1012100' => 'mdo', 'MD12G1195700' => 'mdo', 'MD15G1337900' => 'mdo', 'Medtr3g062930' => 'mtr', 'Medtr3g095900' => 'mtr', 'Medtr8g103900' => 'mtr', 'MELO3C008044.2' => 'cme', 'MELO3C009091.2' => 'cme', 'Migut.H00743' => 'egut', 'Migut.N00708' => 'egut', 'MSTRG.12720' => 'ama', 'MSTRG.2664' => 'ama', 'Nitab4.5_0000105g0390' => 'nta', 'Nitab4.5_0000195g0170' => 'nta', 'Nitab4.5_0000250g0020' => 'nta', 'Nitab4.5_0002399g0050' => 'nta', 'Nitab4.5_0002902g0070' => 'nta', 'Nitab4.5_0004141g0030' => 'nta', 'Nn5g28635' => 'nnu', 'Nn8g41044' => 'nnu', 'Oeu000401.1' => 'oeu', 'Oeu037798.1' => 'oeu', 'Oeu038989.2' => 'oeu', 'Oeu047679.1' => 'oeu', 'Os01g0839300' => 'osa', 'Os03g0815400' => 'osa', 'Os05g0460700' => 'osa', 'Peaxi162Scf00105g00116' => 'pax', 'Peaxi162Scf00293g00714' => 'pax', 'Peaxi162Scf00390g00134' => 'pax', 'PGR031G1856' => 'pgr', 'PGR102G3355' => 'pgr', 'PGR142G4456' => 'pgr', 'PGSC0003DMG400014486' => 'stu', 'PGSC0003DMG400027674' => 'stu', 'PGSC0003DMG400027675' => 'stu', 'Phvul.006G082300' => 'pvu', 'Phvul.009G111900' => 'pvu', 'Phvul.009G148700' => 'pvu', 'Potri.005G061700' => 'ptr', 'Potri.006G113500' => 'ptr', 'Potri.007G107100' => 'ptr', 'Potri.016G143100' => 'ptr', 'Pp3c12_10340' => 'ppa', 'Pp3c13_21730' => 'ppa', 'Pp3c16_7040' => 'ppa', 'Pp3c3_12090' => 'ppa', 'PRCOL_00002809' => 'pco', 'PRCOL_00002810' => 'pco', 'PRCOL_00003552' => 'pco', 'Prupe.6G037700' => 'ppe', 'Prupe.6G158000' => 'ppe', 'Prupe.6G300200' => 'ppe', 'Psat5g056880' => 'psa', 'Psat5g146400' => 'psa', 'PSO339G2538' => 'pso', 'PSO384G4509' => 'pso', 'PSO541G1616' => 'pso', 'PSO675G4286' => 'pso', 'PSO675G8066' => 'pso', 'QL01p023470' => 'qlo', 'QL06p029474' => 'qlo', 'RcHm_v2.0_Chr2g0104481' => 'rch', 'RcHm_v2.0_Chr3g0459361' => 'rch', 'RcHm_v2.0_Chr5g0024011' => 'rch', 'RcHm_v2.0_Chr7g0188221' => 'rch', 'Rhsim13G0056900' => 'rsi', 'Sabra04G0159100' => 'sbr', 'Sabra05G0051900' => 'sbr', 'Sabra06G0088400' => 'sbr', 'Sabra07G0087600' => 'sbr', 'SalBow4G0335' => 'sbo', 'SalBow4G0817' => 'sbo', 'Sc04g0003040' => 'sci', 'Sc06g0001400' => 'sci', 'Sed0005738' => 'sed', 'Sed0017028' => 'sed', 'SEGI_31183' => 'sgi', 'SEGI_39786' => 'sgi', 'SGA_v2.0_scaffold120G33007' => 'sas', 'SGA_v2.0_scaffold77G25339' => 'sas', 'SGA_v2.0_scaffold77G25344' => 'sas', 'SHI11445' => 'shi', 'SMO118G0002' => 'smo', 'SMO364G0779' => 'smo', 'Solyc06g082750.3' => 'sly', 'Solyc06g082760.4' => 'sly', 'Solyc08g067950.3' => 'sly', 'Sopen06g034110' => 'spe', 'Sopen06g034120' => 'spe', 'Sopen08g021870' => 'spe', 'Sp2g27710' => 'spa', 'Sp5g08190' => 'spa', 'Sp6g33620' => 'spa', 'TAR376G0897' => 'tar', 'TAR381G1435' => 'tar', 'TAR633G2622' => 'tar', 'THA.LOC104799480' => 'tha', 'THA.LOC104818462' => 'tha', 'THA.LOC104824208' => 'tha', 'Thecc.01G127100' => 'tca', 'Thecc.05G225800' => 'tca', 'Thhalv10005089m.g' => 'esa', 'Thhalv10010668m.g' => 'esa', 'Thhalv10014895m.g' => 'esa', 'TPR.G13826' => 'tpr', 'TPR.G34646' => 'tpr', 'TWI31G0091' => 'twi', 'TWI74G1237' => 'twi', 'TWI75G1050' => 'twi', 'TWI77G0622' => 'twi', 'unitig_26.g10227' => 'ugi', 'unitig_8.g4580' => 'ugi', 'vmacro02859' => 'vma', 'vmacro14290' => 'vma', 'VMungo0540G2320' => 'vmu', 'VMungo0647G1804' => 'vmu', 'VMungo1309G0562' => 'vmu', 'Zm00001eb212080' => 'zma', 'Zm00001eb368030' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002254', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002254' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002254', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '299', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002254' ) ), 'genes' => array( 'A03p04230' => 'bna', 'A04p05530' => 'bna', 'A06p31380' => 'bna', 'A07p22040' => 'bna', 'A09p08760' => 'bna', 'A09p47210' => 'bna', 'Aa31LG1G17310' => 'aar', 'Aa31LG3G17330' => 'aar', 'Aa31LG7G5710' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2475' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.4427' => 'aag', 'Actinidia06650' => 'ach', 'Actinidia11641' => 'ach', 'Actinidia23145' => 'ach', 'Actinidia23146' => 'ach', 'Ah.01g009370' => 'amhyb', 'AL5G35250' => 'aly', 'AL6G20170' => 'aly', 'AL8G42060' => 'aly', 'Aqoxy5G00323' => 'aox', 'Aqoxy7G00509' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0WC7DT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KW32D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FM41R7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FNHU3U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N1TEIX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZPA39L' => 'arhy', 'AT3G54210' => 'ath', 'AT5G09770' => 'ath', 'AT5G64650' => 'ath', 'ATR0681G323' => 'atr', 'ATR1101G029' => 'atr', 'ATR1127G028' => 'atr', 'Atru.chr4.828' => 'acertr', 'Atru.chr8.28' => 'acertr', 'AUR62008494' => 'cqu', 'AUR62010099' => 'cqu', 'AUR62013095' => 'cqu', 'AUR62021595' => 'cqu', 'BcaB01g05562' => 'bca', 'BcaB01g05660' => 'bca', 'BcaB02g07743' => 'bca', 'BcaB04g19981' => 'bca', 'BcaC02g09080' => 'bca', 'BcaC04g23302' => 'bca', 'BcaC07g39763' => 'bca', 'BcaC08g44675' => 'bca', 'BolC3t13002H' => 'bol', 'BolC3t13004H' => 'bol', 'BolC3t18414H' => 'bol', 'BolC4t25397H' => 'bol', 'BolC6t37390H' => 'bol', 'BolC8t50549H' => 'bol', 'BolC9t53900H' => 'bol', 'BraA03t09768Z' => 'bra', 'BraA04t16254Z' => 'bra', 'BraA06t26080Z' => 'bra', 'BraA07t29887Z' => 'bra', 'BraA09t36526Z' => 'bra', 'BraA09t40182Z' => 'bra', 'C03p04680' => 'bna', 'C03p61540' => 'bna', 'C04p38220' => 'bna', 'C06p22020' => 'bna', 'C08p29470' => 'bna', 'C09p09930' => 'bna', 'CAN.G679.3' => 'can', 'CAN.G874.58' => 'can', 'CAN.G874.59' => 'can', 'CANSAT01G2903' => 'cansat', 'CANSAT54G1112' => 'cansat', 'CARHR164110' => 'chi', 'CARHR203630' => 'chi', 'CARHR278620' => 'chi', 'Carub.0005s2080' => 'cru', 'Carub.0006s0818' => 'cru', 'Carub.0008s2544' => 'cru', 'Ca_15090_v3' => 'car', 'Ca_16929_v3' => 'car', 'CBR_g41367' => 'cbr', 'Cc01_g15590' => 'ccan', 'Cc07_g18050' => 'ccan', 'CDE04G0736' => 'cde', 'CDE04G1571' => 'cde', 'Cfa002830' => 'cfa', 'Cfa016984' => 'cfa', 'Cfa022005' => 'cfa', 'Ciclev10012716m.g' => 'ccl', 'Ciclev10026667m.g' => 'ccl', 'CiPaw.03G128400' => 'cil', 'CiPaw.13G059600' => 'cil', 'ClCG01G015530' => 'cla', 'ClCG10G022870' => 'cla', 'COL.COLO4_01671' => 'col', 'COL.COLO4_14017' => 'col', 'COL.COLO4_32824' => 'col', 'Cpa.g.sc0.26' => 'cpa', 'Cpa.g.sc42.118' => 'cpa', 'Cre02.g108850' => 'cre', 'Cre03.g181350' => 'cre', 'CsaV3_3G032940' => 'csa', 'CsaV3_6G041770' => 'csa', 'CSS0012262' => 'camsi', 'CSS0017576' => 'camsi', 'CSS0030870' => 'camsi', 'CSS0049771' => 'camsi', 'DCAR_001358' => 'dca', 'DCAR_005761' => 'dca', 'DCAR_018592' => 'dca', 'Dinv24771' => 'din', 'Dinv28764' => 'din', 'Dinv30096' => 'din', 'Duzib128G0245' => 'dzi', 'Duzib147G0903' => 'dzi', 'Duzib264G0949' => 'dzi', 'ECA246G3091' => 'eca', 'ECA247G2299' => 'eca', 'EL10Ac1g01201' => 'bvu', 'EL10Ac5g11097' => 'bvu', 'EL10Ac5g11356' => 'bvu', 'EL10Ac5g11449' => 'bvu', 'EL10Ac5g12108' => 'bvu', 'EL10Ac9g21444' => 'bvu', 'Eucgr.A00878' => 'egr', 'Eucgr.H04941' => 'egr', 'FAN02G1608' => 'fan', 'FAN05G2623' => 'fan', 'FAN09G4628' => 'fan', 'FAN11G0976' => 'fan', 'FAN14G5469' => 'fan', 'FAN16G3547' => 'fan', 'FAN21G0823' => 'fan', 'FvH4_3g14560' => 'fve', 'FvH4_6g09150' => 'fve', 'Glyma.04G214500' => 'gma', 'Glyma.06G151700' => 'gma', 'Glyma.11G201700' => 'gma', 'Glyma.18G049200' => 'gma', 'Gohir.A01G176800' => 'ghi', 'Gohir.A08G221638' => 'ghi', 'Gohir.D01G113350' => 'ghi', 'Gohir.D01G167600' => 'ghi', 'Gohir.D08G240100' => 'ghi', 'Gorai.002G138500' => 'gra', 'Gorai.002G208300' => 'gra', 'Gorai.004G255400' => 'gra', 'Gorai.008G092200' => 'gra', 'GSVIVG01026526001' => 'vvi', 'GSVIVG01037929001' => 'vvi', 'HanXRQChr05g0152951' => 'han', 'HanXRQChr08g0231141' => 'han', 'HanXRQChr08g0236341' => 'han', 'Haze_21223' => 'cav', 'Haze_25127' => 'cav', 'Hma1.2p1_0183F.1_g080930' => 'hma', 'HPP92_007570' => 'vpl', 'HPP92_013211' => 'vpl', 'HPP92_013266' => 'vpl', 'HPP92_013271' => 'vpl', 'Hund06402' => 'sun', 'Hund09850' => 'sun', 'Lalb_Chr08g0238481' => 'lal', 'Lalb_Chr11g0068321' => 'lal', 'Lalb_Chr11g0068331' => 'lal', 'Lalb_Chr15g0085571' => 'lal', 'Lj1g0024859' => 'lja', 'Lj1P109T20' => 'lonja', 'Lj2A603T35' => 'lonja', 'Lj6g0000138' => 'lja', 'Lsat_1_v5_gn_3_37780' => 'lsa', 'Lsat_1_v5_gn_9_15461' => 'lsa', 'Manes.08G166500' => 'mes', 'Manes.12G153000' => 'mes', 'Mapoly0013s0204' => 'mpo', 'Mapoly0072s0005' => 'mpo', 'MBI10_g06742_MAGBIO' => 'mbi', 'MBI15_g37412_MAGBIO' => 'mbi', 'MBI15_g47100_MAGBIO' => 'mbi', 'MCO04G031' => 'mco', 'MD01G1012100' => 'mdo', 'MD12G1195700' => 'mdo', 'MD15G1337900' => 'mdo', 'Medtr3g062930' => 'mtr', 'Medtr3g095900' => 'mtr', 'Medtr8g103900' => 'mtr', 'MELO3C008044.2' => 'cme', 'MELO3C009091.2' => 'cme', 'Migut.H00743' => 'egut', 'Migut.N00708' => 'egut', 'MSTRG.12720' => 'ama', 'MSTRG.2664' => 'ama', 'Nitab4.5_0000105g0390' => 'nta', 'Nitab4.5_0000195g0170' => 'nta', 'Nitab4.5_0000250g0020' => 'nta', 'Nitab4.5_0002399g0050' => 'nta', 'Nitab4.5_0002902g0070' => 'nta', 'Nitab4.5_0004141g0030' => 'nta', 'Nn5g28635' => 'nnu', 'Nn8g41044' => 'nnu', 'Oeu000401.1' => 'oeu', 'Oeu037798.1' => 'oeu', 'Oeu038989.2' => 'oeu', 'Oeu047679.1' => 'oeu', 'Os01g0839300' => 'osa', 'Os03g0815400' => 'osa', 'Os05g0460700' => 'osa', 'Peaxi162Scf00105g00116' => 'pax', 'Peaxi162Scf00293g00714' => 'pax', 'Peaxi162Scf00390g00134' => 'pax', 'PGR031G1856' => 'pgr', 'PGR102G3355' => 'pgr', 'PGR142G4456' => 'pgr', 'PGSC0003DMG400014486' => 'stu', 'PGSC0003DMG400027674' => 'stu', 'PGSC0003DMG400027675' => 'stu', 'Phvul.006G082300' => 'pvu', 'Phvul.009G111900' => 'pvu', 'Phvul.009G148700' => 'pvu', 'Potri.005G061700' => 'ptr', 'Potri.006G113500' => 'ptr', 'Potri.007G107100' => 'ptr', 'Potri.016G143100' => 'ptr', 'Pp3c12_10340' => 'ppa', 'Pp3c13_21730' => 'ppa', 'Pp3c16_7040' => 'ppa', 'Pp3c3_12090' => 'ppa', 'PRCOL_00002809' => 'pco', 'PRCOL_00002810' => 'pco', 'PRCOL_00003552' => 'pco', 'Prupe.6G037700' => 'ppe', 'Prupe.6G158000' => 'ppe', 'Prupe.6G300200' => 'ppe', 'Psat5g056880' => 'psa', 'Psat5g146400' => 'psa', 'PSO339G2538' => 'pso', 'PSO384G4509' => 'pso', 'PSO541G1616' => 'pso', 'PSO675G4286' => 'pso', 'PSO675G8066' => 'pso', 'QL01p023470' => 'qlo', 'QL06p029474' => 'qlo', 'RcHm_v2.0_Chr2g0104481' => 'rch', 'RcHm_v2.0_Chr3g0459361' => 'rch', 'RcHm_v2.0_Chr5g0024011' => 'rch', 'RcHm_v2.0_Chr7g0188221' => 'rch', 'Rhsim13G0056900' => 'rsi', 'Sabra04G0159100' => 'sbr', 'Sabra05G0051900' => 'sbr', 'Sabra06G0088400' => 'sbr', 'Sabra07G0087600' => 'sbr', 'SalBow4G0335' => 'sbo', 'SalBow4G0817' => 'sbo', 'Sc04g0003040' => 'sci', 'Sc06g0001400' => 'sci', 'Sed0005738' => 'sed', 'Sed0017028' => 'sed', 'SEGI_31183' => 'sgi', 'SEGI_39786' => 'sgi', 'SGA_v2.0_scaffold120G33007' => 'sas', 'SGA_v2.0_scaffold77G25339' => 'sas', 'SGA_v2.0_scaffold77G25344' => 'sas', 'SHI11445' => 'shi', 'SMO118G0002' => 'smo', 'SMO364G0779' => 'smo', 'Solyc06g082750.3' => 'sly', 'Solyc06g082760.4' => 'sly', 'Solyc08g067950.3' => 'sly', 'Sopen06g034110' => 'spe', 'Sopen06g034120' => 'spe', 'Sopen08g021870' => 'spe', 'Sp2g27710' => 'spa', 'Sp5g08190' => 'spa', 'Sp6g33620' => 'spa', 'TAR376G0897' => 'tar', 'TAR381G1435' => 'tar', 'TAR633G2622' => 'tar', 'THA.LOC104799480' => 'tha', 'THA.LOC104818462' => 'tha', 'THA.LOC104824208' => 'tha', 'Thecc.01G127100' => 'tca', 'Thecc.05G225800' => 'tca', 'Thhalv10005089m.g' => 'esa', 'Thhalv10010668m.g' => 'esa', 'Thhalv10014895m.g' => 'esa', 'TPR.G13826' => 'tpr', 'TPR.G34646' => 'tpr', 'TWI31G0091' => 'twi', 'TWI74G1237' => 'twi', 'TWI75G1050' => 'twi', 'TWI77G0622' => 'twi', 'unitig_26.g10227' => 'ugi', 'unitig_8.g4580' => 'ugi', 'vmacro02859' => 'vma', 'vmacro14290' => 'vma', 'VMungo0540G2320' => 'vmu', 'VMungo0647G1804' => 'vmu', 'VMungo1309G0562' => 'vmu', 'Zm00001eb212080' => 'zma', 'Zm00001eb368030' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002254' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002254' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002254' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002254' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151