Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p04230 Brassica napus
A04p05530 Brassica napus
A06p31380 Brassica napus
A07p22040 Brassica napus
A09p08760 Brassica napus
A09p47210 Brassica napus
Aa31LG1G17310 Aethionema arabicum
Aa31LG3G17330 Aethionema arabicum
Aa31LG7G5710 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2475 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.4427 Anthoceros agrestis
Actinidia06650 Actinidia chinensis
Actinidia11641 Actinidia chinensis
Actinidia23145 Actinidia chinensis
Actinidia23146 Actinidia chinensis
Ah.01g009370 Amaranthus hybridus
AL5G35250 Arabidopsis lyrata
AL6G20170 Arabidopsis lyrata
AL8G42060 Arabidopsis lyrata
Aqoxy5G00323 Aquilegia oxysepala
Aqoxy7G00509 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0WC7DT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2KW32D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FM41R7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FNHU3U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N1TEIX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZPA39L Arachis hypogaea
AT3G54210 Arabidopsis thaliana
AT5G09770 Arabidopsis thaliana
AT5G64650 Arabidopsis thaliana
ATR0681G323 Amborella trichopoda
ATR1101G029 Amborella trichopoda
ATR1127G028 Amborella trichopoda
Atru.chr4.828 Acer truncatum
Atru.chr8.28 Acer truncatum
AUR62008494 Chenopodium quinoa
AUR62010099 Chenopodium quinoa
AUR62013095 Chenopodium quinoa
AUR62021595 Chenopodium quinoa
BcaB01g05562 Brassica carinata
BcaB01g05660 Brassica carinata
BcaB02g07743 Brassica carinata
BcaB04g19981 Brassica carinata
BcaC02g09080 Brassica carinata
BcaC04g23302 Brassica carinata
BcaC07g39763 Brassica carinata
BcaC08g44675 Brassica carinata
BolC3t13002H Brassica oleracea
BolC3t13004H Brassica oleracea
BolC3t18414H Brassica oleracea
BolC4t25397H Brassica oleracea
BolC6t37390H Brassica oleracea
BolC8t50549H Brassica oleracea
BolC9t53900H Brassica oleracea
BraA03t09768Z Brassica rapa
BraA04t16254Z Brassica rapa
BraA06t26080Z Brassica rapa
BraA07t29887Z Brassica rapa
BraA09t36526Z Brassica rapa
BraA09t40182Z Brassica rapa
C03p04680 Brassica napus
C03p61540 Brassica napus
C04p38220 Brassica napus
C06p22020 Brassica napus
C08p29470 Brassica napus
C09p09930 Brassica napus
CAN.G679.3 Capsicum annuum
CAN.G874.58 Capsicum annuum
CAN.G874.59 Capsicum annuum
CANSAT01G2903 Cannabis sativa
CANSAT54G1112 Cannabis sativa
CARHR164110 Cardamine hirsuta
CARHR203630 Cardamine hirsuta
CARHR278620 Cardamine hirsuta
Carub.0005s2080 Capsella rubella
Carub.0006s0818 Capsella rubella
Carub.0008s2544 Capsella rubella
Ca_15090_v3 Cicer arietinum L.
Ca_16929_v3 Cicer arietinum L.
CBR_g41367 Chara braunii
Cc01_g15590 Coffea canephora
Cc07_g18050 Coffea canephora
CDE04G0736 Ceratophyllum demersum
CDE04G1571 Ceratophyllum demersum
Cfa002830 Carpinus fangiana
Cfa016984 Carpinus fangiana
Cfa022005 Carpinus fangiana
Ciclev10012716m.g Citrus clementina
Ciclev10026667m.g Citrus clementina
CiPaw.03G128400 Carya illinoinensis
CiPaw.13G059600 Carya illinoinensis
ClCG01G015530 Citrullus lanatus
ClCG10G022870 Citrullus lanatus
COL.COLO4_01671 Corchorus olitorius
COL.COLO4_14017 Corchorus olitorius
COL.COLO4_32824 Corchorus olitorius
Cpa.g.sc0.26 Carica papaya
Cpa.g.sc42.118 Carica papaya
Cre02.g108850 Chlamydomonas reinhardtii
Cre03.g181350 Chlamydomonas reinhardtii
CsaV3_3G032940 Cucumis sativus L.
CsaV3_6G041770 Cucumis sativus L.
CSS0012262 Camellia sinensis var. sinensis
CSS0017576 Camellia sinensis var. sinensis
CSS0030870 Camellia sinensis var. sinensis
CSS0049771 Camellia sinensis var. sinensis
DCAR_001358 Daucus carota
DCAR_005761 Daucus carota
DCAR_018592 Daucus carota
Dinv24771 Davidia involucrata
Dinv28764 Davidia involucrata
Dinv30096 Davidia involucrata
Duzib128G0245 Durio zibethinus
Duzib147G0903 Durio zibethinus
Duzib264G0949 Durio zibethinus
ECA246G3091 Erigeron canadensis
ECA247G2299 Erigeron canadensis
EL10Ac1g01201 Beta vulgaris
EL10Ac5g11097 Beta vulgaris
EL10Ac5g11356 Beta vulgaris
EL10Ac5g11449 Beta vulgaris
EL10Ac5g12108 Beta vulgaris
EL10Ac9g21444 Beta vulgaris
Eucgr.A00878 Eucalyptus grandis
Eucgr.H04941 Eucalyptus grandis
FAN02G1608 Fragaria x ananassa
FAN05G2623 Fragaria x ananassa
FAN09G4628 Fragaria x ananassa
FAN11G0976 Fragaria x ananassa
FAN14G5469 Fragaria x ananassa
FAN16G3547 Fragaria x ananassa
FAN21G0823 Fragaria x ananassa
FvH4_3g14560 Fragaria vesca
FvH4_6g09150 Fragaria vesca
Glyma.04G214500 Glycine max
Glyma.06G151700 Glycine max
Glyma.11G201700 Glycine max
Glyma.18G049200 Glycine max
Gohir.A01G176800 Gossypium hirsutum
Gohir.A08G221638 Gossypium hirsutum
Gohir.D01G113350 Gossypium hirsutum
Gohir.D01G167600 Gossypium hirsutum
Gohir.D08G240100 Gossypium hirsutum
Gorai.002G138500 Gossypium raimondii
Gorai.002G208300 Gossypium raimondii
Gorai.004G255400 Gossypium raimondii
Gorai.008G092200 Gossypium raimondii
GSVIVG01026526001 Vitis vinifera
GSVIVG01037929001 Vitis vinifera
HanXRQChr05g0152951 Helianthus annuus
HanXRQChr08g0231141 Helianthus annuus
HanXRQChr08g0236341 Helianthus annuus
Haze_21223 Corylus avellana
Haze_25127 Corylus avellana
Hma1.2p1_0183F.1_g080930 Hydrangea macrophylla
HPP92_007570 Vanilla planifolia
HPP92_013211 Vanilla planifolia
HPP92_013266 Vanilla planifolia
HPP92_013271 Vanilla planifolia
Hund06402 Selenicereus undatus
Hund09850 Selenicereus undatus
Lalb_Chr08g0238481 Lupinus albus
Lalb_Chr11g0068321 Lupinus albus
Lalb_Chr11g0068331 Lupinus albus
Lalb_Chr15g0085571 Lupinus albus
Lj1g0024859 Lotus japonicus
Lj1P109T20 Lonicera japonica
Lj2A603T35 Lonicera japonica
Lj6g0000138 Lotus japonicus
Lsat_1_v5_gn_3_37780 Lactuca sativa
Lsat_1_v5_gn_9_15461 Lactuca sativa
Manes.08G166500 Manihot esculenta
Manes.12G153000 Manihot esculenta
Mapoly0013s0204 Marchantia polymorpha
Mapoly0072s0005 Marchantia polymorpha
MBI10_g06742_MAGBIO Magnolia biondii
MBI15_g37412_MAGBIO Magnolia biondii
MBI15_g47100_MAGBIO Magnolia biondii
MCO04G031 Micromonas commoda
MD01G1012100 Malus domestica
MD12G1195700 Malus domestica
MD15G1337900 Malus domestica
Medtr3g062930 Medicago truncatula
Medtr3g095900 Medicago truncatula
Medtr8g103900 Medicago truncatula
MELO3C008044.2 Cucumis melo
MELO3C009091.2 Cucumis melo
Migut.H00743 Erythranthe guttata
Migut.N00708 Erythranthe guttata
MSTRG.12720 Avicennia marina
MSTRG.2664 Avicennia marina
Nitab4.5_0000105g0390 Nicotiana tabacum
Nitab4.5_0000195g0170 Nicotiana tabacum
Nitab4.5_0000250g0020 Nicotiana tabacum
Nitab4.5_0002399g0050 Nicotiana tabacum
Nitab4.5_0002902g0070 Nicotiana tabacum
Nitab4.5_0004141g0030 Nicotiana tabacum
Nn5g28635 Nelumbo nucifera
Nn8g41044 Nelumbo nucifera
Oeu000401.1 Olea europaea
Oeu037798.1 Olea europaea
Oeu038989.2 Olea europaea
Oeu047679.1 Olea europaea
Os01g0839300 Oryza sativa ssp. japonica
Os03g0815400 Oryza sativa ssp. japonica
Os05g0460700 Oryza sativa ssp. japonica
Peaxi162Scf00105g00116 Petunia axillaris
Peaxi162Scf00293g00714 Petunia axillaris
Peaxi162Scf00390g00134 Petunia axillaris
PGR031G1856 Punica granatum
PGR102G3355 Punica granatum
PGR142G4456 Punica granatum
PGSC0003DMG400014486 Solanum tuberosum
PGSC0003DMG400027674 Solanum tuberosum
PGSC0003DMG400027675 Solanum tuberosum
Phvul.006G082300 Phaseolus vulgaris
Phvul.009G111900 Phaseolus vulgaris
Phvul.009G148700 Phaseolus vulgaris
Potri.005G061700 Populus trichocarpa
Potri.006G113500 Populus trichocarpa
Potri.007G107100 Populus trichocarpa
Potri.016G143100 Populus trichocarpa
Pp3c12_10340 Physcomitrium patens
Pp3c13_21730 Physcomitrium patens
Pp3c16_7040 Physcomitrium patens
Pp3c3_12090 Physcomitrium patens
PRCOL_00002809 Prasinoderma coloniale
PRCOL_00002810 Prasinoderma coloniale
PRCOL_00003552 Prasinoderma coloniale
Prupe.6G037700 Prunus persica
Prupe.6G158000 Prunus persica
Prupe.6G300200 Prunus persica
Psat5g056880 Pisum sativum
Psat5g146400 Pisum sativum
PSO339G2538 Papaver somniferum
PSO384G4509 Papaver somniferum
PSO541G1616 Papaver somniferum
PSO675G4286 Papaver somniferum
PSO675G8066 Papaver somniferum
QL01p023470 Quercus lobata
QL06p029474 Quercus lobata
RcHm_v2.0_Chr2g0104481 Rosa chinensis
RcHm_v2.0_Chr3g0459361 Rosa chinensis
RcHm_v2.0_Chr5g0024011 Rosa chinensis
RcHm_v2.0_Chr7g0188221 Rosa chinensis
Rhsim13G0056900 Rhododendron simsii
Sabra04G0159100 Salix brachista
Sabra05G0051900 Salix brachista
Sabra06G0088400 Salix brachista
Sabra07G0087600 Salix brachista
SalBow4G0335 Salvia bowleyana
SalBow4G0817 Salvia bowleyana
Sc04g0003040 Simmondsia chinensis
Sc06g0001400 Simmondsia chinensis
Sed0005738 Sechium edule
Sed0017028 Sechium edule
SEGI_31183 Sequoiadendron giganteum
SEGI_39786 Sequoiadendron giganteum
SGA_v2.0_scaffold120G33007 Striga asiatica
SGA_v2.0_scaffold77G25339 Striga asiatica
SGA_v2.0_scaffold77G25344 Striga asiatica
SHI11445 Sapria himalayana
SMO118G0002 Selaginella moellendorffii
SMO364G0779 Selaginella moellendorffii
Solyc06g082750.3 Solanum lycopersicum
Solyc06g082760.4 Solanum lycopersicum
Solyc08g067950.3 Solanum lycopersicum
Sopen06g034110 Solanum pennellii
Sopen06g034120 Solanum pennellii
Sopen08g021870 Solanum pennellii
Sp2g27710 Schrenkiella parvula
Sp5g08190 Schrenkiella parvula
Sp6g33620 Schrenkiella parvula
TAR376G0897 Trochodendron aralioides
TAR381G1435 Trochodendron aralioides
TAR633G2622 Trochodendron aralioides
THA.LOC104799480 Tarenaya hassleriana
THA.LOC104818462 Tarenaya hassleriana
THA.LOC104824208 Tarenaya hassleriana
Thecc.01G127100 Theobroma cacao
Thecc.05G225800 Theobroma cacao
Thhalv10005089m.g Eutrema salsugineum
Thhalv10010668m.g Eutrema salsugineum
Thhalv10014895m.g Eutrema salsugineum
TPR.G13826 Trifolium pratense
TPR.G34646 Trifolium pratense
TWI31G0091 Tripterygium wilfordii
TWI74G1237 Tripterygium wilfordii
TWI75G1050 Tripterygium wilfordii
TWI77G0622 Tripterygium wilfordii
unitig_26.g10227 Utricularia gibba
unitig_8.g4580 Utricularia gibba
vmacro02859 Vaccinium macrocarpon
vmacro14290 Vaccinium macrocarpon
VMungo0540G2320 Vigna mungo
VMungo0647G1804 Vigna mungo
VMungo1309G0562 Vigna mungo
Zm00001eb212080 Zea mays
Zm00001eb368030 Zea mays

User provided reference genes

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