Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002215', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '303', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p23270' => 'bna', 'A04p07860' => 'bna', 'A04p31610' => 'bna', 'Aa31LG1G23450' => 'aar', 'Aa31LG9G3120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1564' => 'aag', 'Actinidia17680' => 'ach', 'Actinidia33892' => 'ach', 'Actinidia38147' => 'ach', 'Ah.04g151290' => 'amhyb', 'Ah.13g076710' => 'amhyb', 'Ah.16g104020' => 'amhyb', 'AL4G39510' => 'aly', 'AL7G42040' => 'aly', 'Aqoxy2G00277' => 'aox', 'Aqoxy4G02187' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKS1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.914GI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHUR4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9D87U' => 'arhy', 'AT2G41430' => 'ath', 'AT4G14270' => 'ath', 'ATR0594G170' => 'atr', 'Atru.chr1.1249' => 'acertr', 'Atru.chr12.124' => 'acertr', 'AUR62012323' => 'cqu', 'AUR62022964' => 'cqu', 'AUR62026143' => 'cqu', 'AUR62030391' => 'cqu', 'BcaB01g03468' => 'bca', 'BcaB02g08623' => 'bca', 'BcaC01g05337' => 'bca', 'BcaC02g09339' => 'bca', 'BcaC02g12903' => 'bca', 'BcaC07g37611' => 'bca', 'BolC3t15147H' => 'bol', 'BolC4t25732H' => 'bol', 'BolC4t28401H' => 'bol', 'BraA03t11546Z' => 'bra', 'BraA04t16474Z' => 'bra', 'BraA04t18619Z' => 'bra', 'C03p27770' => 'bna', 'C04p41500' => 'bna', 'C04p69040' => 'bna', 'CAN.G1237.26' => 'can', 'CAN.G1656.11' => 'can', 'CAN.G252.13' => 'can', 'CANSAT56G1677' => 'cansat', 'CANSAT80G2732' => 'cansat', 'CARHR136550' => 'chi', 'CARHR220420' => 'chi', 'Carub.0004s1237' => 'cru', 'Carub.0004s2373' => 'cru', 'Carub.0007s2807' => 'cru', 'Ca_06009_v3' => 'car', 'Ca_08421_v3' => 'car', 'Ca_27049_v3' => 'car', 'Cc06_g18450' => 'ccan', 'CDE04G2823' => 'cde', 'CDE06G0538' => 'cde', 'CDE07G0432' => 'cde', 'CDE08G0507' => 'cde', 'CDE08G0586' => 'cde', 'CDE09G0498' => 'cde', 'Cfa001247' => 'cfa', 'Cfa016744' => 'cfa', 'Cfa016747' => 'cfa', 'Ciclev10006124m.g' => 'ccl', 'Ciclev10032949m.g' => 'ccl', 'Ciclev10033013m.g' => 'ccl', 'CiPaw.01G302900' => 'cil', 'CiPaw.09G043100' => 'cil', 'CiPaw.10G036900' => 'cil', 'ClCG01G007600' => 'cla', 'ClCG04G004160' => 'cla', 'ClCG11G005940' => 'cla', 'COL.COLO4_21285' => 'col', 'COL.COLO4_25812' => 'col', 'COL.COLO4_25842' => 'col', 'Cpa.g.sc19.111' => 'cpa', 'Cpa.g.sc197.11' => 'cpa', 'Cpa.g.sc5.215' => 'cpa', 'CsaV3_4G022030' => 'csa', 'CsaV3_5G024610' => 'csa', 'CsaV3_6G002060' => 'csa', 'CSS0029123' => 'camsi', 'CSS0042072' => 'camsi', 'DCAR_013620' => 'dca', 'DCAR_020532' => 'dca', 'DCAR_024798' => 'dca', 'DCAR_028559' => 'dca', 'Dinv10569' => 'din', 'Dinv18690' => 'din', 'Dinv21802' => 'din', 'Dinv30284' => 'din', 'Duzib106G1995' => 'dzi', 'Duzib128G1130' => 'dzi', 'Duzib128G1780' => 'dzi', 'Duzib128G1863' => 'dzi', 'ECA236G0753' => 'eca', 'ECA238G1451' => 'eca', 'ECA248G1014' => 'eca', 'EL10Ac2g04915' => 'bvu', 'EL10Ac3g07173' => 'bvu', 'Eucgr.A02291' => 'egr', 'Eucgr.G03104' => 'egr', 'FAN01G0927' => 'fan', 'FAN02G2615' => 'fan', 'FAN03G0867' => 'fan', 'FAN05G2790' => 'fan', 'FAN06G2085' => 'fan', 'FAN10G1531' => 'fan', 'FAN14G1505' => 'fan', 'FvH4_6g24790' => 'fve', 'FvH4_7g25400' => 'fve', 'Glyma.02G260800' => 'gma', 'Glyma.03G131900' => 'gma', 'Glyma.04G138600' => 'gma', 'Glyma.11G149900' => 'gma', 'Glyma.19G133800' => 'gma', 'Gohir.A05G332200' => 'ghi', 'Gohir.A13G002900' => 'ghi', 'Gohir.A13G013400' => 'ghi', 'Gohir.D04G070900' => 'ghi', 'Gohir.D13G002800' => 'ghi', 'Gohir.D13G014500' => 'ghi', 'Gorai.012G079800' => 'gra', 'Gorai.013G002700' => 'gra', 'Gorai.013G015700' => 'gra', 'GSVIVG01000857001' => 'vvi', 'GSVIVG01032732001' => 'vvi', 'GSVIVG01033561001' => 'vvi', 'HanXRQChr01g0008281' => 'han', 'HanXRQChr04g0124951' => 'han', 'HanXRQChr07g0203511' => 'han', 'Haze_03109' => 'cav', 'Haze_17303' => 'cav', 'Haze_19757' => 'cav', 'Haze_19759' => 'cav', 'Hma1.2p1_0056F.1_g031690' => 'hma', 'Hma1.2p1_1687F.1_g297530' => 'hma', 'HPP92_012480' => 'vpl', 'HPP92_013848' => 'vpl', 'HPP92_013862' => 'vpl', 'HPP92_014155' => 'vpl', 'HPP92_014175' => 'vpl', 'Hund13328' => 'sun', 'Hund13523' => 'sun', 'Hund19120' => 'sun', 'Lalb_Chr04g0250361' => 'lal', 'Lalb_Chr20g0110291' => 'lal', 'Lalb_Chr25g0282461' => 'lal', 'Lj1g0019573' => 'lja', 'Lj1P1118T20' => 'lonja', 'Lj1P1121T18' => 'lonja', 'Lj2P392T38' => 'lonja', 'Lj3g0009113' => 'lja', 'LjContig00357g0021340' => 'lja', 'Lsat_1_v5_gn_2_125820' => 'lsa', 'Lsat_1_v5_gn_5_160961' => 'lsa', 'Lsat_1_v5_gn_8_83020' => 'lsa', 'Manes.04G163900' => 'mes', 'Manes.07G136300' => 'mes', 'Manes.08G055000' => 'mes', 'Manes.09G010100' => 'mes', 'Mapoly0002s0342' => 'mpo', 'Mapoly0045s0059' => 'mpo', 'MBI03_g41402_MAGBIO' => 'mbi', 'MBI03_g43457_MAGBIO' => 'mbi', 'MD01G1160300' => 'mdo', 'MD07G1228500' => 'mdo', 'MD14G1081500' => 'mdo', 'Medtr3g023110' => 'mtr', 'Medtr5g083690' => 'mtr', 'Medtr7g090630' => 'mtr', 'MELO3C005136.2' => 'cme', 'MELO3C014211.2' => 'cme', 'MELO3C019981.2' => 'cme', 'Migut.F00617' => 'egut', 'Migut.J01696' => 'egut', 'Migut.K00114' => 'egut', 'MSTRG.19831' => 'ama', 'MSTRG.26141' => 'ama', 'MSTRG.6396' => 'ama', 'MSTRG.8913' => 'ama', 'Nitab4.5_0000562g0020' => 'nta', 'Nitab4.5_0000677g0040' => 'nta', 'Nitab4.5_0001291g0080' => 'nta', 'Nitab4.5_0001618g0080' => 'nta', 'Nitab4.5_0002854g0070' => 'nta', 'Nitab4.5_0008674g0020' => 'nta', 'Nn2g11033' => 'nnu', 'Nn2g14871' => 'nnu', 'Nn2g14878' => 'nnu', 'Nn2g15049' => 'nnu', 'Nn7g36454' => 'nnu', 'Oeu008185.2' => 'oeu', 'Oeu039378.1' => 'oeu', 'Oeu042056.3' => 'oeu', 'Oeu049505.1' => 'oeu', 'Os03g0353400' => 'osa', 'Os05g0344200' => 'osa', 'Os07g0661400' => 'osa', 'Peaxi162Scf00130g01128' => 'pax', 'Peaxi162Scf00284g00234' => 'pax', 'Peaxi162Scf01315g00112' => 'pax', 'PGR031G1848' => 'pgr', 'PGR142G1630' => 'pgr', 'PGSC0003DMG400007624' => 'stu', 'PGSC0003DMG400023945' => 'stu', 'PGSC0003DMG400029848' => 'stu', 'Phvul.001G127900' => 'pvu', 'Phvul.005G033200' => 'pvu', 'Phvul.008G219700' => 'pvu', 'Potri.001G023100' => 'ptr', 'Potri.003G202500' => 'ptr', 'Potri.006G044600' => 'ptr', 'Potri.008G074600' => 'ptr', 'Potri.010G182800' => 'ptr', 'Potri.016G041600' => 'ptr', 'Pp3c24_6320' => 'ppa', 'Pp3c8_13720' => 'ppa', 'Prupe.2G258200' => 'ppe', 'Prupe.7G049200' => 'ppe', 'Psat3g075720' => 'psa', 'Psat5g185000' => 'psa', 'Psat5g213440' => 'psa', 'PSO017G2937' => 'pso', 'PSO339G0109' => 'pso', 'PSO349G0302' => 'pso', 'PSO384G4363' => 'pso', 'QL04p013206' => 'qlo', 'QL07p004841' => 'qlo', 'QL08p064088' => 'qlo', 'QL08p064121' => 'qlo', 'RcHm_v2.0_Chr1g0371351' => 'rch', 'RcHm_v2.0_Chr2g0124241' => 'rch', 'Rhsim03G0148500' => 'rsi', 'Rhsim04G0108400' => 'rsi', 'Sabra01G0017400' => 'sbr', 'Sabra03G0149600' => 'sbr', 'Sabra06G0030800' => 'sbr', 'Sabra10G0140200' => 'sbr', 'SalBow1G7629' => 'sbo', 'SalBow3G0904' => 'sbo', 'SalBow6G0458' => 'sbo', 'Sc11g0005540' => 'sci', 'Sc19g0008420' => 'sci', 'Sc25g0005390' => 'sci', 'Sed0000241' => 'sed', 'Sed0006350' => 'sed', 'Sed0013824' => 'sed', 'Sed0014677' => 'sed', 'Sed0027929' => 'sed', 'SEGI_10877' => 'sgi', 'SEGI_35540' => 'sgi', 'SGA_v2.0_scaffold105G30344' => 'sas', 'SGA_v2.0_scaffold273G46407' => 'sas', 'SGA_v2.0_scaffold44G16651' => 'sas', 'SGA_v2.0_scaffold69G23135' => 'sas', 'SMO137G0126' => 'smo', 'Solyc04g017690.3' => 'sly', 'Solyc10g079820.2' => 'sly', 'Sopen04g008770' => 'spe', 'Sopen06g016260' => 'spe', 'Sopen10g030430' => 'spe', 'Sp4g23700' => 'spa', 'Sp7g12280' => 'spa', 'TAR623G0368' => 'tar', 'TAR623G1259' => 'tar', 'TAR623G1458' => 'tar', 'TAR623G1589' => 'tar', 'TAR623G1745' => 'tar', 'TAR633G2515' => 'tar', 'TAR636G1645' => 'tar', 'TAR636G2431' => 'tar', 'THA.LOC104803284' => 'tha', 'THA.LOC104816525' => 'tha', 'THA.LOC104819116' => 'tha', 'Thecc.04G137300' => 'tca', 'Thecc.05G144400' => 'tca', 'Thecc.10G008600' => 'tca', 'Thhalv10017353m.g' => 'esa', 'Thhalv10026475m.g' => 'esa', 'TPR.G31985' => 'tpr', 'TPR.G323' => 'tpr', 'TPR.G32722' => 'tpr', 'TWI09G1319' => 'twi', 'TWI53G0072' => 'twi', 'TWI73G0816' => 'twi', 'TWI74G1337' => 'twi', 'unitig_37.g12465' => 'ugi', 'unitig_46.g18738' => 'ugi', 'vmacro06913' => 'vma', 'vmacro09035' => 'vma', 'VMungo0647G1981' => 'vmu', 'VMungo1080G0442' => 'vmu', 'VMungo1383G3048' => 'vmu', 'Zm00001eb110880' => 'zma', 'Zm00001eb286310' => 'zma', 'Zm00001eb329900' => 'zma', 'Zm00001eb394600' => 'zma', 'Zm00001eb400880' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002215', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002215' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002215', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '303', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002215' ) ), 'genes' => array( 'A03p23270' => 'bna', 'A04p07860' => 'bna', 'A04p31610' => 'bna', 'Aa31LG1G23450' => 'aar', 'Aa31LG9G3120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1564' => 'aag', 'Actinidia17680' => 'ach', 'Actinidia33892' => 'ach', 'Actinidia38147' => 'ach', 'Ah.04g151290' => 'amhyb', 'Ah.13g076710' => 'amhyb', 'Ah.16g104020' => 'amhyb', 'AL4G39510' => 'aly', 'AL7G42040' => 'aly', 'Aqoxy2G00277' => 'aox', 'Aqoxy4G02187' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKS1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.914GI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHUR4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9D87U' => 'arhy', 'AT2G41430' => 'ath', 'AT4G14270' => 'ath', 'ATR0594G170' => 'atr', 'Atru.chr1.1249' => 'acertr', 'Atru.chr12.124' => 'acertr', 'AUR62012323' => 'cqu', 'AUR62022964' => 'cqu', 'AUR62026143' => 'cqu', 'AUR62030391' => 'cqu', 'BcaB01g03468' => 'bca', 'BcaB02g08623' => 'bca', 'BcaC01g05337' => 'bca', 'BcaC02g09339' => 'bca', 'BcaC02g12903' => 'bca', 'BcaC07g37611' => 'bca', 'BolC3t15147H' => 'bol', 'BolC4t25732H' => 'bol', 'BolC4t28401H' => 'bol', 'BraA03t11546Z' => 'bra', 'BraA04t16474Z' => 'bra', 'BraA04t18619Z' => 'bra', 'C03p27770' => 'bna', 'C04p41500' => 'bna', 'C04p69040' => 'bna', 'CAN.G1237.26' => 'can', 'CAN.G1656.11' => 'can', 'CAN.G252.13' => 'can', 'CANSAT56G1677' => 'cansat', 'CANSAT80G2732' => 'cansat', 'CARHR136550' => 'chi', 'CARHR220420' => 'chi', 'Carub.0004s1237' => 'cru', 'Carub.0004s2373' => 'cru', 'Carub.0007s2807' => 'cru', 'Ca_06009_v3' => 'car', 'Ca_08421_v3' => 'car', 'Ca_27049_v3' => 'car', 'Cc06_g18450' => 'ccan', 'CDE04G2823' => 'cde', 'CDE06G0538' => 'cde', 'CDE07G0432' => 'cde', 'CDE08G0507' => 'cde', 'CDE08G0586' => 'cde', 'CDE09G0498' => 'cde', 'Cfa001247' => 'cfa', 'Cfa016744' => 'cfa', 'Cfa016747' => 'cfa', 'Ciclev10006124m.g' => 'ccl', 'Ciclev10032949m.g' => 'ccl', 'Ciclev10033013m.g' => 'ccl', 'CiPaw.01G302900' => 'cil', 'CiPaw.09G043100' => 'cil', 'CiPaw.10G036900' => 'cil', 'ClCG01G007600' => 'cla', 'ClCG04G004160' => 'cla', 'ClCG11G005940' => 'cla', 'COL.COLO4_21285' => 'col', 'COL.COLO4_25812' => 'col', 'COL.COLO4_25842' => 'col', 'Cpa.g.sc19.111' => 'cpa', 'Cpa.g.sc197.11' => 'cpa', 'Cpa.g.sc5.215' => 'cpa', 'CsaV3_4G022030' => 'csa', 'CsaV3_5G024610' => 'csa', 'CsaV3_6G002060' => 'csa', 'CSS0029123' => 'camsi', 'CSS0042072' => 'camsi', 'DCAR_013620' => 'dca', 'DCAR_020532' => 'dca', 'DCAR_024798' => 'dca', 'DCAR_028559' => 'dca', 'Dinv10569' => 'din', 'Dinv18690' => 'din', 'Dinv21802' => 'din', 'Dinv30284' => 'din', 'Duzib106G1995' => 'dzi', 'Duzib128G1130' => 'dzi', 'Duzib128G1780' => 'dzi', 'Duzib128G1863' => 'dzi', 'ECA236G0753' => 'eca', 'ECA238G1451' => 'eca', 'ECA248G1014' => 'eca', 'EL10Ac2g04915' => 'bvu', 'EL10Ac3g07173' => 'bvu', 'Eucgr.A02291' => 'egr', 'Eucgr.G03104' => 'egr', 'FAN01G0927' => 'fan', 'FAN02G2615' => 'fan', 'FAN03G0867' => 'fan', 'FAN05G2790' => 'fan', 'FAN06G2085' => 'fan', 'FAN10G1531' => 'fan', 'FAN14G1505' => 'fan', 'FvH4_6g24790' => 'fve', 'FvH4_7g25400' => 'fve', 'Glyma.02G260800' => 'gma', 'Glyma.03G131900' => 'gma', 'Glyma.04G138600' => 'gma', 'Glyma.11G149900' => 'gma', 'Glyma.19G133800' => 'gma', 'Gohir.A05G332200' => 'ghi', 'Gohir.A13G002900' => 'ghi', 'Gohir.A13G013400' => 'ghi', 'Gohir.D04G070900' => 'ghi', 'Gohir.D13G002800' => 'ghi', 'Gohir.D13G014500' => 'ghi', 'Gorai.012G079800' => 'gra', 'Gorai.013G002700' => 'gra', 'Gorai.013G015700' => 'gra', 'GSVIVG01000857001' => 'vvi', 'GSVIVG01032732001' => 'vvi', 'GSVIVG01033561001' => 'vvi', 'HanXRQChr01g0008281' => 'han', 'HanXRQChr04g0124951' => 'han', 'HanXRQChr07g0203511' => 'han', 'Haze_03109' => 'cav', 'Haze_17303' => 'cav', 'Haze_19757' => 'cav', 'Haze_19759' => 'cav', 'Hma1.2p1_0056F.1_g031690' => 'hma', 'Hma1.2p1_1687F.1_g297530' => 'hma', 'HPP92_012480' => 'vpl', 'HPP92_013848' => 'vpl', 'HPP92_013862' => 'vpl', 'HPP92_014155' => 'vpl', 'HPP92_014175' => 'vpl', 'Hund13328' => 'sun', 'Hund13523' => 'sun', 'Hund19120' => 'sun', 'Lalb_Chr04g0250361' => 'lal', 'Lalb_Chr20g0110291' => 'lal', 'Lalb_Chr25g0282461' => 'lal', 'Lj1g0019573' => 'lja', 'Lj1P1118T20' => 'lonja', 'Lj1P1121T18' => 'lonja', 'Lj2P392T38' => 'lonja', 'Lj3g0009113' => 'lja', 'LjContig00357g0021340' => 'lja', 'Lsat_1_v5_gn_2_125820' => 'lsa', 'Lsat_1_v5_gn_5_160961' => 'lsa', 'Lsat_1_v5_gn_8_83020' => 'lsa', 'Manes.04G163900' => 'mes', 'Manes.07G136300' => 'mes', 'Manes.08G055000' => 'mes', 'Manes.09G010100' => 'mes', 'Mapoly0002s0342' => 'mpo', 'Mapoly0045s0059' => 'mpo', 'MBI03_g41402_MAGBIO' => 'mbi', 'MBI03_g43457_MAGBIO' => 'mbi', 'MD01G1160300' => 'mdo', 'MD07G1228500' => 'mdo', 'MD14G1081500' => 'mdo', 'Medtr3g023110' => 'mtr', 'Medtr5g083690' => 'mtr', 'Medtr7g090630' => 'mtr', 'MELO3C005136.2' => 'cme', 'MELO3C014211.2' => 'cme', 'MELO3C019981.2' => 'cme', 'Migut.F00617' => 'egut', 'Migut.J01696' => 'egut', 'Migut.K00114' => 'egut', 'MSTRG.19831' => 'ama', 'MSTRG.26141' => 'ama', 'MSTRG.6396' => 'ama', 'MSTRG.8913' => 'ama', 'Nitab4.5_0000562g0020' => 'nta', 'Nitab4.5_0000677g0040' => 'nta', 'Nitab4.5_0001291g0080' => 'nta', 'Nitab4.5_0001618g0080' => 'nta', 'Nitab4.5_0002854g0070' => 'nta', 'Nitab4.5_0008674g0020' => 'nta', 'Nn2g11033' => 'nnu', 'Nn2g14871' => 'nnu', 'Nn2g14878' => 'nnu', 'Nn2g15049' => 'nnu', 'Nn7g36454' => 'nnu', 'Oeu008185.2' => 'oeu', 'Oeu039378.1' => 'oeu', 'Oeu042056.3' => 'oeu', 'Oeu049505.1' => 'oeu', 'Os03g0353400' => 'osa', 'Os05g0344200' => 'osa', 'Os07g0661400' => 'osa', 'Peaxi162Scf00130g01128' => 'pax', 'Peaxi162Scf00284g00234' => 'pax', 'Peaxi162Scf01315g00112' => 'pax', 'PGR031G1848' => 'pgr', 'PGR142G1630' => 'pgr', 'PGSC0003DMG400007624' => 'stu', 'PGSC0003DMG400023945' => 'stu', 'PGSC0003DMG400029848' => 'stu', 'Phvul.001G127900' => 'pvu', 'Phvul.005G033200' => 'pvu', 'Phvul.008G219700' => 'pvu', 'Potri.001G023100' => 'ptr', 'Potri.003G202500' => 'ptr', 'Potri.006G044600' => 'ptr', 'Potri.008G074600' => 'ptr', 'Potri.010G182800' => 'ptr', 'Potri.016G041600' => 'ptr', 'Pp3c24_6320' => 'ppa', 'Pp3c8_13720' => 'ppa', 'Prupe.2G258200' => 'ppe', 'Prupe.7G049200' => 'ppe', 'Psat3g075720' => 'psa', 'Psat5g185000' => 'psa', 'Psat5g213440' => 'psa', 'PSO017G2937' => 'pso', 'PSO339G0109' => 'pso', 'PSO349G0302' => 'pso', 'PSO384G4363' => 'pso', 'QL04p013206' => 'qlo', 'QL07p004841' => 'qlo', 'QL08p064088' => 'qlo', 'QL08p064121' => 'qlo', 'RcHm_v2.0_Chr1g0371351' => 'rch', 'RcHm_v2.0_Chr2g0124241' => 'rch', 'Rhsim03G0148500' => 'rsi', 'Rhsim04G0108400' => 'rsi', 'Sabra01G0017400' => 'sbr', 'Sabra03G0149600' => 'sbr', 'Sabra06G0030800' => 'sbr', 'Sabra10G0140200' => 'sbr', 'SalBow1G7629' => 'sbo', 'SalBow3G0904' => 'sbo', 'SalBow6G0458' => 'sbo', 'Sc11g0005540' => 'sci', 'Sc19g0008420' => 'sci', 'Sc25g0005390' => 'sci', 'Sed0000241' => 'sed', 'Sed0006350' => 'sed', 'Sed0013824' => 'sed', 'Sed0014677' => 'sed', 'Sed0027929' => 'sed', 'SEGI_10877' => 'sgi', 'SEGI_35540' => 'sgi', 'SGA_v2.0_scaffold105G30344' => 'sas', 'SGA_v2.0_scaffold273G46407' => 'sas', 'SGA_v2.0_scaffold44G16651' => 'sas', 'SGA_v2.0_scaffold69G23135' => 'sas', 'SMO137G0126' => 'smo', 'Solyc04g017690.3' => 'sly', 'Solyc10g079820.2' => 'sly', 'Sopen04g008770' => 'spe', 'Sopen06g016260' => 'spe', 'Sopen10g030430' => 'spe', 'Sp4g23700' => 'spa', 'Sp7g12280' => 'spa', 'TAR623G0368' => 'tar', 'TAR623G1259' => 'tar', 'TAR623G1458' => 'tar', 'TAR623G1589' => 'tar', 'TAR623G1745' => 'tar', 'TAR633G2515' => 'tar', 'TAR636G1645' => 'tar', 'TAR636G2431' => 'tar', 'THA.LOC104803284' => 'tha', 'THA.LOC104816525' => 'tha', 'THA.LOC104819116' => 'tha', 'Thecc.04G137300' => 'tca', 'Thecc.05G144400' => 'tca', 'Thecc.10G008600' => 'tca', 'Thhalv10017353m.g' => 'esa', 'Thhalv10026475m.g' => 'esa', 'TPR.G31985' => 'tpr', 'TPR.G323' => 'tpr', 'TPR.G32722' => 'tpr', 'TWI09G1319' => 'twi', 'TWI53G0072' => 'twi', 'TWI73G0816' => 'twi', 'TWI74G1337' => 'twi', 'unitig_37.g12465' => 'ugi', 'unitig_46.g18738' => 'ugi', 'vmacro06913' => 'vma', 'vmacro09035' => 'vma', 'VMungo0647G1981' => 'vmu', 'VMungo1080G0442' => 'vmu', 'VMungo1383G3048' => 'vmu', 'Zm00001eb110880' => 'zma', 'Zm00001eb286310' => 'zma', 'Zm00001eb329900' => 'zma', 'Zm00001eb394600' => 'zma', 'Zm00001eb400880' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002215' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002215' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002215' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002215' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002215', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '303', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p23270' => 'bna', 'A04p07860' => 'bna', 'A04p31610' => 'bna', 'Aa31LG1G23450' => 'aar', 'Aa31LG9G3120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1564' => 'aag', 'Actinidia17680' => 'ach', 'Actinidia33892' => 'ach', 'Actinidia38147' => 'ach', 'Ah.04g151290' => 'amhyb', 'Ah.13g076710' => 'amhyb', 'Ah.16g104020' => 'amhyb', 'AL4G39510' => 'aly', 'AL7G42040' => 'aly', 'Aqoxy2G00277' => 'aox', 'Aqoxy4G02187' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKS1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.914GI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHUR4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9D87U' => 'arhy', 'AT2G41430' => 'ath', 'AT4G14270' => 'ath', 'ATR0594G170' => 'atr', 'Atru.chr1.1249' => 'acertr', 'Atru.chr12.124' => 'acertr', 'AUR62012323' => 'cqu', 'AUR62022964' => 'cqu', 'AUR62026143' => 'cqu', 'AUR62030391' => 'cqu', 'BcaB01g03468' => 'bca', 'BcaB02g08623' => 'bca', 'BcaC01g05337' => 'bca', 'BcaC02g09339' => 'bca', 'BcaC02g12903' => 'bca', 'BcaC07g37611' => 'bca', 'BolC3t15147H' => 'bol', 'BolC4t25732H' => 'bol', 'BolC4t28401H' => 'bol', 'BraA03t11546Z' => 'bra', 'BraA04t16474Z' => 'bra', 'BraA04t18619Z' => 'bra', 'C03p27770' => 'bna', 'C04p41500' => 'bna', 'C04p69040' => 'bna', 'CAN.G1237.26' => 'can', 'CAN.G1656.11' => 'can', 'CAN.G252.13' => 'can', 'CANSAT56G1677' => 'cansat', 'CANSAT80G2732' => 'cansat', 'CARHR136550' => 'chi', 'CARHR220420' => 'chi', 'Carub.0004s1237' => 'cru', 'Carub.0004s2373' => 'cru', 'Carub.0007s2807' => 'cru', 'Ca_06009_v3' => 'car', 'Ca_08421_v3' => 'car', 'Ca_27049_v3' => 'car', 'Cc06_g18450' => 'ccan', 'CDE04G2823' => 'cde', 'CDE06G0538' => 'cde', 'CDE07G0432' => 'cde', 'CDE08G0507' => 'cde', 'CDE08G0586' => 'cde', 'CDE09G0498' => 'cde', 'Cfa001247' => 'cfa', 'Cfa016744' => 'cfa', 'Cfa016747' => 'cfa', 'Ciclev10006124m.g' => 'ccl', 'Ciclev10032949m.g' => 'ccl', 'Ciclev10033013m.g' => 'ccl', 'CiPaw.01G302900' => 'cil', 'CiPaw.09G043100' => 'cil', 'CiPaw.10G036900' => 'cil', 'ClCG01G007600' => 'cla', 'ClCG04G004160' => 'cla', 'ClCG11G005940' => 'cla', 'COL.COLO4_21285' => 'col', 'COL.COLO4_25812' => 'col', 'COL.COLO4_25842' => 'col', 'Cpa.g.sc19.111' => 'cpa', 'Cpa.g.sc197.11' => 'cpa', 'Cpa.g.sc5.215' => 'cpa', 'CsaV3_4G022030' => 'csa', 'CsaV3_5G024610' => 'csa', 'CsaV3_6G002060' => 'csa', 'CSS0029123' => 'camsi', 'CSS0042072' => 'camsi', 'DCAR_013620' => 'dca', 'DCAR_020532' => 'dca', 'DCAR_024798' => 'dca', 'DCAR_028559' => 'dca', 'Dinv10569' => 'din', 'Dinv18690' => 'din', 'Dinv21802' => 'din', 'Dinv30284' => 'din', 'Duzib106G1995' => 'dzi', 'Duzib128G1130' => 'dzi', 'Duzib128G1780' => 'dzi', 'Duzib128G1863' => 'dzi', 'ECA236G0753' => 'eca', 'ECA238G1451' => 'eca', 'ECA248G1014' => 'eca', 'EL10Ac2g04915' => 'bvu', 'EL10Ac3g07173' => 'bvu', 'Eucgr.A02291' => 'egr', 'Eucgr.G03104' => 'egr', 'FAN01G0927' => 'fan', 'FAN02G2615' => 'fan', 'FAN03G0867' => 'fan', 'FAN05G2790' => 'fan', 'FAN06G2085' => 'fan', 'FAN10G1531' => 'fan', 'FAN14G1505' => 'fan', 'FvH4_6g24790' => 'fve', 'FvH4_7g25400' => 'fve', 'Glyma.02G260800' => 'gma', 'Glyma.03G131900' => 'gma', 'Glyma.04G138600' => 'gma', 'Glyma.11G149900' => 'gma', 'Glyma.19G133800' => 'gma', 'Gohir.A05G332200' => 'ghi', 'Gohir.A13G002900' => 'ghi', 'Gohir.A13G013400' => 'ghi', 'Gohir.D04G070900' => 'ghi', 'Gohir.D13G002800' => 'ghi', 'Gohir.D13G014500' => 'ghi', 'Gorai.012G079800' => 'gra', 'Gorai.013G002700' => 'gra', 'Gorai.013G015700' => 'gra', 'GSVIVG01000857001' => 'vvi', 'GSVIVG01032732001' => 'vvi', 'GSVIVG01033561001' => 'vvi', 'HanXRQChr01g0008281' => 'han', 'HanXRQChr04g0124951' => 'han', 'HanXRQChr07g0203511' => 'han', 'Haze_03109' => 'cav', 'Haze_17303' => 'cav', 'Haze_19757' => 'cav', 'Haze_19759' => 'cav', 'Hma1.2p1_0056F.1_g031690' => 'hma', 'Hma1.2p1_1687F.1_g297530' => 'hma', 'HPP92_012480' => 'vpl', 'HPP92_013848' => 'vpl', 'HPP92_013862' => 'vpl', 'HPP92_014155' => 'vpl', 'HPP92_014175' => 'vpl', 'Hund13328' => 'sun', 'Hund13523' => 'sun', 'Hund19120' => 'sun', 'Lalb_Chr04g0250361' => 'lal', 'Lalb_Chr20g0110291' => 'lal', 'Lalb_Chr25g0282461' => 'lal', 'Lj1g0019573' => 'lja', 'Lj1P1118T20' => 'lonja', 'Lj1P1121T18' => 'lonja', 'Lj2P392T38' => 'lonja', 'Lj3g0009113' => 'lja', 'LjContig00357g0021340' => 'lja', 'Lsat_1_v5_gn_2_125820' => 'lsa', 'Lsat_1_v5_gn_5_160961' => 'lsa', 'Lsat_1_v5_gn_8_83020' => 'lsa', 'Manes.04G163900' => 'mes', 'Manes.07G136300' => 'mes', 'Manes.08G055000' => 'mes', 'Manes.09G010100' => 'mes', 'Mapoly0002s0342' => 'mpo', 'Mapoly0045s0059' => 'mpo', 'MBI03_g41402_MAGBIO' => 'mbi', 'MBI03_g43457_MAGBIO' => 'mbi', 'MD01G1160300' => 'mdo', 'MD07G1228500' => 'mdo', 'MD14G1081500' => 'mdo', 'Medtr3g023110' => 'mtr', 'Medtr5g083690' => 'mtr', 'Medtr7g090630' => 'mtr', 'MELO3C005136.2' => 'cme', 'MELO3C014211.2' => 'cme', 'MELO3C019981.2' => 'cme', 'Migut.F00617' => 'egut', 'Migut.J01696' => 'egut', 'Migut.K00114' => 'egut', 'MSTRG.19831' => 'ama', 'MSTRG.26141' => 'ama', 'MSTRG.6396' => 'ama', 'MSTRG.8913' => 'ama', 'Nitab4.5_0000562g0020' => 'nta', 'Nitab4.5_0000677g0040' => 'nta', 'Nitab4.5_0001291g0080' => 'nta', 'Nitab4.5_0001618g0080' => 'nta', 'Nitab4.5_0002854g0070' => 'nta', 'Nitab4.5_0008674g0020' => 'nta', 'Nn2g11033' => 'nnu', 'Nn2g14871' => 'nnu', 'Nn2g14878' => 'nnu', 'Nn2g15049' => 'nnu', 'Nn7g36454' => 'nnu', 'Oeu008185.2' => 'oeu', 'Oeu039378.1' => 'oeu', 'Oeu042056.3' => 'oeu', 'Oeu049505.1' => 'oeu', 'Os03g0353400' => 'osa', 'Os05g0344200' => 'osa', 'Os07g0661400' => 'osa', 'Peaxi162Scf00130g01128' => 'pax', 'Peaxi162Scf00284g00234' => 'pax', 'Peaxi162Scf01315g00112' => 'pax', 'PGR031G1848' => 'pgr', 'PGR142G1630' => 'pgr', 'PGSC0003DMG400007624' => 'stu', 'PGSC0003DMG400023945' => 'stu', 'PGSC0003DMG400029848' => 'stu', 'Phvul.001G127900' => 'pvu', 'Phvul.005G033200' => 'pvu', 'Phvul.008G219700' => 'pvu', 'Potri.001G023100' => 'ptr', 'Potri.003G202500' => 'ptr', 'Potri.006G044600' => 'ptr', 'Potri.008G074600' => 'ptr', 'Potri.010G182800' => 'ptr', 'Potri.016G041600' => 'ptr', 'Pp3c24_6320' => 'ppa', 'Pp3c8_13720' => 'ppa', 'Prupe.2G258200' => 'ppe', 'Prupe.7G049200' => 'ppe', 'Psat3g075720' => 'psa', 'Psat5g185000' => 'psa', 'Psat5g213440' => 'psa', 'PSO017G2937' => 'pso', 'PSO339G0109' => 'pso', 'PSO349G0302' => 'pso', 'PSO384G4363' => 'pso', 'QL04p013206' => 'qlo', 'QL07p004841' => 'qlo', 'QL08p064088' => 'qlo', 'QL08p064121' => 'qlo', 'RcHm_v2.0_Chr1g0371351' => 'rch', 'RcHm_v2.0_Chr2g0124241' => 'rch', 'Rhsim03G0148500' => 'rsi', 'Rhsim04G0108400' => 'rsi', 'Sabra01G0017400' => 'sbr', 'Sabra03G0149600' => 'sbr', 'Sabra06G0030800' => 'sbr', 'Sabra10G0140200' => 'sbr', 'SalBow1G7629' => 'sbo', 'SalBow3G0904' => 'sbo', 'SalBow6G0458' => 'sbo', 'Sc11g0005540' => 'sci', 'Sc19g0008420' => 'sci', 'Sc25g0005390' => 'sci', 'Sed0000241' => 'sed', 'Sed0006350' => 'sed', 'Sed0013824' => 'sed', 'Sed0014677' => 'sed', 'Sed0027929' => 'sed', 'SEGI_10877' => 'sgi', 'SEGI_35540' => 'sgi', 'SGA_v2.0_scaffold105G30344' => 'sas', 'SGA_v2.0_scaffold273G46407' => 'sas', 'SGA_v2.0_scaffold44G16651' => 'sas', 'SGA_v2.0_scaffold69G23135' => 'sas', 'SMO137G0126' => 'smo', 'Solyc04g017690.3' => 'sly', 'Solyc10g079820.2' => 'sly', 'Sopen04g008770' => 'spe', 'Sopen06g016260' => 'spe', 'Sopen10g030430' => 'spe', 'Sp4g23700' => 'spa', 'Sp7g12280' => 'spa', 'TAR623G0368' => 'tar', 'TAR623G1259' => 'tar', 'TAR623G1458' => 'tar', 'TAR623G1589' => 'tar', 'TAR623G1745' => 'tar', 'TAR633G2515' => 'tar', 'TAR636G1645' => 'tar', 'TAR636G2431' => 'tar', 'THA.LOC104803284' => 'tha', 'THA.LOC104816525' => 'tha', 'THA.LOC104819116' => 'tha', 'Thecc.04G137300' => 'tca', 'Thecc.05G144400' => 'tca', 'Thecc.10G008600' => 'tca', 'Thhalv10017353m.g' => 'esa', 'Thhalv10026475m.g' => 'esa', 'TPR.G31985' => 'tpr', 'TPR.G323' => 'tpr', 'TPR.G32722' => 'tpr', 'TWI09G1319' => 'twi', 'TWI53G0072' => 'twi', 'TWI73G0816' => 'twi', 'TWI74G1337' => 'twi', 'unitig_37.g12465' => 'ugi', 'unitig_46.g18738' => 'ugi', 'vmacro06913' => 'vma', 'vmacro09035' => 'vma', 'VMungo0647G1981' => 'vmu', 'VMungo1080G0442' => 'vmu', 'VMungo1383G3048' => 'vmu', 'Zm00001eb110880' => 'zma', 'Zm00001eb286310' => 'zma', 'Zm00001eb329900' => 'zma', 'Zm00001eb394600' => 'zma', 'Zm00001eb400880' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002215', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002215' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002215', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '303', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002215' ) ), 'genes' => array( 'A03p23270' => 'bna', 'A04p07860' => 'bna', 'A04p31610' => 'bna', 'Aa31LG1G23450' => 'aar', 'Aa31LG9G3120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1564' => 'aag', 'Actinidia17680' => 'ach', 'Actinidia33892' => 'ach', 'Actinidia38147' => 'ach', 'Ah.04g151290' => 'amhyb', 'Ah.13g076710' => 'amhyb', 'Ah.16g104020' => 'amhyb', 'AL4G39510' => 'aly', 'AL7G42040' => 'aly', 'Aqoxy2G00277' => 'aox', 'Aqoxy4G02187' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKS1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.914GI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHUR4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9D87U' => 'arhy', 'AT2G41430' => 'ath', 'AT4G14270' => 'ath', 'ATR0594G170' => 'atr', 'Atru.chr1.1249' => 'acertr', 'Atru.chr12.124' => 'acertr', 'AUR62012323' => 'cqu', 'AUR62022964' => 'cqu', 'AUR62026143' => 'cqu', 'AUR62030391' => 'cqu', 'BcaB01g03468' => 'bca', 'BcaB02g08623' => 'bca', 'BcaC01g05337' => 'bca', 'BcaC02g09339' => 'bca', 'BcaC02g12903' => 'bca', 'BcaC07g37611' => 'bca', 'BolC3t15147H' => 'bol', 'BolC4t25732H' => 'bol', 'BolC4t28401H' => 'bol', 'BraA03t11546Z' => 'bra', 'BraA04t16474Z' => 'bra', 'BraA04t18619Z' => 'bra', 'C03p27770' => 'bna', 'C04p41500' => 'bna', 'C04p69040' => 'bna', 'CAN.G1237.26' => 'can', 'CAN.G1656.11' => 'can', 'CAN.G252.13' => 'can', 'CANSAT56G1677' => 'cansat', 'CANSAT80G2732' => 'cansat', 'CARHR136550' => 'chi', 'CARHR220420' => 'chi', 'Carub.0004s1237' => 'cru', 'Carub.0004s2373' => 'cru', 'Carub.0007s2807' => 'cru', 'Ca_06009_v3' => 'car', 'Ca_08421_v3' => 'car', 'Ca_27049_v3' => 'car', 'Cc06_g18450' => 'ccan', 'CDE04G2823' => 'cde', 'CDE06G0538' => 'cde', 'CDE07G0432' => 'cde', 'CDE08G0507' => 'cde', 'CDE08G0586' => 'cde', 'CDE09G0498' => 'cde', 'Cfa001247' => 'cfa', 'Cfa016744' => 'cfa', 'Cfa016747' => 'cfa', 'Ciclev10006124m.g' => 'ccl', 'Ciclev10032949m.g' => 'ccl', 'Ciclev10033013m.g' => 'ccl', 'CiPaw.01G302900' => 'cil', 'CiPaw.09G043100' => 'cil', 'CiPaw.10G036900' => 'cil', 'ClCG01G007600' => 'cla', 'ClCG04G004160' => 'cla', 'ClCG11G005940' => 'cla', 'COL.COLO4_21285' => 'col', 'COL.COLO4_25812' => 'col', 'COL.COLO4_25842' => 'col', 'Cpa.g.sc19.111' => 'cpa', 'Cpa.g.sc197.11' => 'cpa', 'Cpa.g.sc5.215' => 'cpa', 'CsaV3_4G022030' => 'csa', 'CsaV3_5G024610' => 'csa', 'CsaV3_6G002060' => 'csa', 'CSS0029123' => 'camsi', 'CSS0042072' => 'camsi', 'DCAR_013620' => 'dca', 'DCAR_020532' => 'dca', 'DCAR_024798' => 'dca', 'DCAR_028559' => 'dca', 'Dinv10569' => 'din', 'Dinv18690' => 'din', 'Dinv21802' => 'din', 'Dinv30284' => 'din', 'Duzib106G1995' => 'dzi', 'Duzib128G1130' => 'dzi', 'Duzib128G1780' => 'dzi', 'Duzib128G1863' => 'dzi', 'ECA236G0753' => 'eca', 'ECA238G1451' => 'eca', 'ECA248G1014' => 'eca', 'EL10Ac2g04915' => 'bvu', 'EL10Ac3g07173' => 'bvu', 'Eucgr.A02291' => 'egr', 'Eucgr.G03104' => 'egr', 'FAN01G0927' => 'fan', 'FAN02G2615' => 'fan', 'FAN03G0867' => 'fan', 'FAN05G2790' => 'fan', 'FAN06G2085' => 'fan', 'FAN10G1531' => 'fan', 'FAN14G1505' => 'fan', 'FvH4_6g24790' => 'fve', 'FvH4_7g25400' => 'fve', 'Glyma.02G260800' => 'gma', 'Glyma.03G131900' => 'gma', 'Glyma.04G138600' => 'gma', 'Glyma.11G149900' => 'gma', 'Glyma.19G133800' => 'gma', 'Gohir.A05G332200' => 'ghi', 'Gohir.A13G002900' => 'ghi', 'Gohir.A13G013400' => 'ghi', 'Gohir.D04G070900' => 'ghi', 'Gohir.D13G002800' => 'ghi', 'Gohir.D13G014500' => 'ghi', 'Gorai.012G079800' => 'gra', 'Gorai.013G002700' => 'gra', 'Gorai.013G015700' => 'gra', 'GSVIVG01000857001' => 'vvi', 'GSVIVG01032732001' => 'vvi', 'GSVIVG01033561001' => 'vvi', 'HanXRQChr01g0008281' => 'han', 'HanXRQChr04g0124951' => 'han', 'HanXRQChr07g0203511' => 'han', 'Haze_03109' => 'cav', 'Haze_17303' => 'cav', 'Haze_19757' => 'cav', 'Haze_19759' => 'cav', 'Hma1.2p1_0056F.1_g031690' => 'hma', 'Hma1.2p1_1687F.1_g297530' => 'hma', 'HPP92_012480' => 'vpl', 'HPP92_013848' => 'vpl', 'HPP92_013862' => 'vpl', 'HPP92_014155' => 'vpl', 'HPP92_014175' => 'vpl', 'Hund13328' => 'sun', 'Hund13523' => 'sun', 'Hund19120' => 'sun', 'Lalb_Chr04g0250361' => 'lal', 'Lalb_Chr20g0110291' => 'lal', 'Lalb_Chr25g0282461' => 'lal', 'Lj1g0019573' => 'lja', 'Lj1P1118T20' => 'lonja', 'Lj1P1121T18' => 'lonja', 'Lj2P392T38' => 'lonja', 'Lj3g0009113' => 'lja', 'LjContig00357g0021340' => 'lja', 'Lsat_1_v5_gn_2_125820' => 'lsa', 'Lsat_1_v5_gn_5_160961' => 'lsa', 'Lsat_1_v5_gn_8_83020' => 'lsa', 'Manes.04G163900' => 'mes', 'Manes.07G136300' => 'mes', 'Manes.08G055000' => 'mes', 'Manes.09G010100' => 'mes', 'Mapoly0002s0342' => 'mpo', 'Mapoly0045s0059' => 'mpo', 'MBI03_g41402_MAGBIO' => 'mbi', 'MBI03_g43457_MAGBIO' => 'mbi', 'MD01G1160300' => 'mdo', 'MD07G1228500' => 'mdo', 'MD14G1081500' => 'mdo', 'Medtr3g023110' => 'mtr', 'Medtr5g083690' => 'mtr', 'Medtr7g090630' => 'mtr', 'MELO3C005136.2' => 'cme', 'MELO3C014211.2' => 'cme', 'MELO3C019981.2' => 'cme', 'Migut.F00617' => 'egut', 'Migut.J01696' => 'egut', 'Migut.K00114' => 'egut', 'MSTRG.19831' => 'ama', 'MSTRG.26141' => 'ama', 'MSTRG.6396' => 'ama', 'MSTRG.8913' => 'ama', 'Nitab4.5_0000562g0020' => 'nta', 'Nitab4.5_0000677g0040' => 'nta', 'Nitab4.5_0001291g0080' => 'nta', 'Nitab4.5_0001618g0080' => 'nta', 'Nitab4.5_0002854g0070' => 'nta', 'Nitab4.5_0008674g0020' => 'nta', 'Nn2g11033' => 'nnu', 'Nn2g14871' => 'nnu', 'Nn2g14878' => 'nnu', 'Nn2g15049' => 'nnu', 'Nn7g36454' => 'nnu', 'Oeu008185.2' => 'oeu', 'Oeu039378.1' => 'oeu', 'Oeu042056.3' => 'oeu', 'Oeu049505.1' => 'oeu', 'Os03g0353400' => 'osa', 'Os05g0344200' => 'osa', 'Os07g0661400' => 'osa', 'Peaxi162Scf00130g01128' => 'pax', 'Peaxi162Scf00284g00234' => 'pax', 'Peaxi162Scf01315g00112' => 'pax', 'PGR031G1848' => 'pgr', 'PGR142G1630' => 'pgr', 'PGSC0003DMG400007624' => 'stu', 'PGSC0003DMG400023945' => 'stu', 'PGSC0003DMG400029848' => 'stu', 'Phvul.001G127900' => 'pvu', 'Phvul.005G033200' => 'pvu', 'Phvul.008G219700' => 'pvu', 'Potri.001G023100' => 'ptr', 'Potri.003G202500' => 'ptr', 'Potri.006G044600' => 'ptr', 'Potri.008G074600' => 'ptr', 'Potri.010G182800' => 'ptr', 'Potri.016G041600' => 'ptr', 'Pp3c24_6320' => 'ppa', 'Pp3c8_13720' => 'ppa', 'Prupe.2G258200' => 'ppe', 'Prupe.7G049200' => 'ppe', 'Psat3g075720' => 'psa', 'Psat5g185000' => 'psa', 'Psat5g213440' => 'psa', 'PSO017G2937' => 'pso', 'PSO339G0109' => 'pso', 'PSO349G0302' => 'pso', 'PSO384G4363' => 'pso', 'QL04p013206' => 'qlo', 'QL07p004841' => 'qlo', 'QL08p064088' => 'qlo', 'QL08p064121' => 'qlo', 'RcHm_v2.0_Chr1g0371351' => 'rch', 'RcHm_v2.0_Chr2g0124241' => 'rch', 'Rhsim03G0148500' => 'rsi', 'Rhsim04G0108400' => 'rsi', 'Sabra01G0017400' => 'sbr', 'Sabra03G0149600' => 'sbr', 'Sabra06G0030800' => 'sbr', 'Sabra10G0140200' => 'sbr', 'SalBow1G7629' => 'sbo', 'SalBow3G0904' => 'sbo', 'SalBow6G0458' => 'sbo', 'Sc11g0005540' => 'sci', 'Sc19g0008420' => 'sci', 'Sc25g0005390' => 'sci', 'Sed0000241' => 'sed', 'Sed0006350' => 'sed', 'Sed0013824' => 'sed', 'Sed0014677' => 'sed', 'Sed0027929' => 'sed', 'SEGI_10877' => 'sgi', 'SEGI_35540' => 'sgi', 'SGA_v2.0_scaffold105G30344' => 'sas', 'SGA_v2.0_scaffold273G46407' => 'sas', 'SGA_v2.0_scaffold44G16651' => 'sas', 'SGA_v2.0_scaffold69G23135' => 'sas', 'SMO137G0126' => 'smo', 'Solyc04g017690.3' => 'sly', 'Solyc10g079820.2' => 'sly', 'Sopen04g008770' => 'spe', 'Sopen06g016260' => 'spe', 'Sopen10g030430' => 'spe', 'Sp4g23700' => 'spa', 'Sp7g12280' => 'spa', 'TAR623G0368' => 'tar', 'TAR623G1259' => 'tar', 'TAR623G1458' => 'tar', 'TAR623G1589' => 'tar', 'TAR623G1745' => 'tar', 'TAR633G2515' => 'tar', 'TAR636G1645' => 'tar', 'TAR636G2431' => 'tar', 'THA.LOC104803284' => 'tha', 'THA.LOC104816525' => 'tha', 'THA.LOC104819116' => 'tha', 'Thecc.04G137300' => 'tca', 'Thecc.05G144400' => 'tca', 'Thecc.10G008600' => 'tca', 'Thhalv10017353m.g' => 'esa', 'Thhalv10026475m.g' => 'esa', 'TPR.G31985' => 'tpr', 'TPR.G323' => 'tpr', 'TPR.G32722' => 'tpr', 'TWI09G1319' => 'twi', 'TWI53G0072' => 'twi', 'TWI73G0816' => 'twi', 'TWI74G1337' => 'twi', 'unitig_37.g12465' => 'ugi', 'unitig_46.g18738' => 'ugi', 'vmacro06913' => 'vma', 'vmacro09035' => 'vma', 'VMungo0647G1981' => 'vmu', 'VMungo1080G0442' => 'vmu', 'VMungo1383G3048' => 'vmu', 'Zm00001eb110880' => 'zma', 'Zm00001eb286310' => 'zma', 'Zm00001eb329900' => 'zma', 'Zm00001eb394600' => 'zma', 'Zm00001eb400880' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002215' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002215' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002215' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002215' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002215', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '303', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p23270' => 'bna', 'A04p07860' => 'bna', 'A04p31610' => 'bna', 'Aa31LG1G23450' => 'aar', 'Aa31LG9G3120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1564' => 'aag', 'Actinidia17680' => 'ach', 'Actinidia33892' => 'ach', 'Actinidia38147' => 'ach', 'Ah.04g151290' => 'amhyb', 'Ah.13g076710' => 'amhyb', 'Ah.16g104020' => 'amhyb', 'AL4G39510' => 'aly', 'AL7G42040' => 'aly', 'Aqoxy2G00277' => 'aox', 'Aqoxy4G02187' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKS1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.914GI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHUR4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9D87U' => 'arhy', 'AT2G41430' => 'ath', 'AT4G14270' => 'ath', 'ATR0594G170' => 'atr', 'Atru.chr1.1249' => 'acertr', 'Atru.chr12.124' => 'acertr', 'AUR62012323' => 'cqu', 'AUR62022964' => 'cqu', 'AUR62026143' => 'cqu', 'AUR62030391' => 'cqu', 'BcaB01g03468' => 'bca', 'BcaB02g08623' => 'bca', 'BcaC01g05337' => 'bca', 'BcaC02g09339' => 'bca', 'BcaC02g12903' => 'bca', 'BcaC07g37611' => 'bca', 'BolC3t15147H' => 'bol', 'BolC4t25732H' => 'bol', 'BolC4t28401H' => 'bol', 'BraA03t11546Z' => 'bra', 'BraA04t16474Z' => 'bra', 'BraA04t18619Z' => 'bra', 'C03p27770' => 'bna', 'C04p41500' => 'bna', 'C04p69040' => 'bna', 'CAN.G1237.26' => 'can', 'CAN.G1656.11' => 'can', 'CAN.G252.13' => 'can', 'CANSAT56G1677' => 'cansat', 'CANSAT80G2732' => 'cansat', 'CARHR136550' => 'chi', 'CARHR220420' => 'chi', 'Carub.0004s1237' => 'cru', 'Carub.0004s2373' => 'cru', 'Carub.0007s2807' => 'cru', 'Ca_06009_v3' => 'car', 'Ca_08421_v3' => 'car', 'Ca_27049_v3' => 'car', 'Cc06_g18450' => 'ccan', 'CDE04G2823' => 'cde', 'CDE06G0538' => 'cde', 'CDE07G0432' => 'cde', 'CDE08G0507' => 'cde', 'CDE08G0586' => 'cde', 'CDE09G0498' => 'cde', 'Cfa001247' => 'cfa', 'Cfa016744' => 'cfa', 'Cfa016747' => 'cfa', 'Ciclev10006124m.g' => 'ccl', 'Ciclev10032949m.g' => 'ccl', 'Ciclev10033013m.g' => 'ccl', 'CiPaw.01G302900' => 'cil', 'CiPaw.09G043100' => 'cil', 'CiPaw.10G036900' => 'cil', 'ClCG01G007600' => 'cla', 'ClCG04G004160' => 'cla', 'ClCG11G005940' => 'cla', 'COL.COLO4_21285' => 'col', 'COL.COLO4_25812' => 'col', 'COL.COLO4_25842' => 'col', 'Cpa.g.sc19.111' => 'cpa', 'Cpa.g.sc197.11' => 'cpa', 'Cpa.g.sc5.215' => 'cpa', 'CsaV3_4G022030' => 'csa', 'CsaV3_5G024610' => 'csa', 'CsaV3_6G002060' => 'csa', 'CSS0029123' => 'camsi', 'CSS0042072' => 'camsi', 'DCAR_013620' => 'dca', 'DCAR_020532' => 'dca', 'DCAR_024798' => 'dca', 'DCAR_028559' => 'dca', 'Dinv10569' => 'din', 'Dinv18690' => 'din', 'Dinv21802' => 'din', 'Dinv30284' => 'din', 'Duzib106G1995' => 'dzi', 'Duzib128G1130' => 'dzi', 'Duzib128G1780' => 'dzi', 'Duzib128G1863' => 'dzi', 'ECA236G0753' => 'eca', 'ECA238G1451' => 'eca', 'ECA248G1014' => 'eca', 'EL10Ac2g04915' => 'bvu', 'EL10Ac3g07173' => 'bvu', 'Eucgr.A02291' => 'egr', 'Eucgr.G03104' => 'egr', 'FAN01G0927' => 'fan', 'FAN02G2615' => 'fan', 'FAN03G0867' => 'fan', 'FAN05G2790' => 'fan', 'FAN06G2085' => 'fan', 'FAN10G1531' => 'fan', 'FAN14G1505' => 'fan', 'FvH4_6g24790' => 'fve', 'FvH4_7g25400' => 'fve', 'Glyma.02G260800' => 'gma', 'Glyma.03G131900' => 'gma', 'Glyma.04G138600' => 'gma', 'Glyma.11G149900' => 'gma', 'Glyma.19G133800' => 'gma', 'Gohir.A05G332200' => 'ghi', 'Gohir.A13G002900' => 'ghi', 'Gohir.A13G013400' => 'ghi', 'Gohir.D04G070900' => 'ghi', 'Gohir.D13G002800' => 'ghi', 'Gohir.D13G014500' => 'ghi', 'Gorai.012G079800' => 'gra', 'Gorai.013G002700' => 'gra', 'Gorai.013G015700' => 'gra', 'GSVIVG01000857001' => 'vvi', 'GSVIVG01032732001' => 'vvi', 'GSVIVG01033561001' => 'vvi', 'HanXRQChr01g0008281' => 'han', 'HanXRQChr04g0124951' => 'han', 'HanXRQChr07g0203511' => 'han', 'Haze_03109' => 'cav', 'Haze_17303' => 'cav', 'Haze_19757' => 'cav', 'Haze_19759' => 'cav', 'Hma1.2p1_0056F.1_g031690' => 'hma', 'Hma1.2p1_1687F.1_g297530' => 'hma', 'HPP92_012480' => 'vpl', 'HPP92_013848' => 'vpl', 'HPP92_013862' => 'vpl', 'HPP92_014155' => 'vpl', 'HPP92_014175' => 'vpl', 'Hund13328' => 'sun', 'Hund13523' => 'sun', 'Hund19120' => 'sun', 'Lalb_Chr04g0250361' => 'lal', 'Lalb_Chr20g0110291' => 'lal', 'Lalb_Chr25g0282461' => 'lal', 'Lj1g0019573' => 'lja', 'Lj1P1118T20' => 'lonja', 'Lj1P1121T18' => 'lonja', 'Lj2P392T38' => 'lonja', 'Lj3g0009113' => 'lja', 'LjContig00357g0021340' => 'lja', 'Lsat_1_v5_gn_2_125820' => 'lsa', 'Lsat_1_v5_gn_5_160961' => 'lsa', 'Lsat_1_v5_gn_8_83020' => 'lsa', 'Manes.04G163900' => 'mes', 'Manes.07G136300' => 'mes', 'Manes.08G055000' => 'mes', 'Manes.09G010100' => 'mes', 'Mapoly0002s0342' => 'mpo', 'Mapoly0045s0059' => 'mpo', 'MBI03_g41402_MAGBIO' => 'mbi', 'MBI03_g43457_MAGBIO' => 'mbi', 'MD01G1160300' => 'mdo', 'MD07G1228500' => 'mdo', 'MD14G1081500' => 'mdo', 'Medtr3g023110' => 'mtr', 'Medtr5g083690' => 'mtr', 'Medtr7g090630' => 'mtr', 'MELO3C005136.2' => 'cme', 'MELO3C014211.2' => 'cme', 'MELO3C019981.2' => 'cme', 'Migut.F00617' => 'egut', 'Migut.J01696' => 'egut', 'Migut.K00114' => 'egut', 'MSTRG.19831' => 'ama', 'MSTRG.26141' => 'ama', 'MSTRG.6396' => 'ama', 'MSTRG.8913' => 'ama', 'Nitab4.5_0000562g0020' => 'nta', 'Nitab4.5_0000677g0040' => 'nta', 'Nitab4.5_0001291g0080' => 'nta', 'Nitab4.5_0001618g0080' => 'nta', 'Nitab4.5_0002854g0070' => 'nta', 'Nitab4.5_0008674g0020' => 'nta', 'Nn2g11033' => 'nnu', 'Nn2g14871' => 'nnu', 'Nn2g14878' => 'nnu', 'Nn2g15049' => 'nnu', 'Nn7g36454' => 'nnu', 'Oeu008185.2' => 'oeu', 'Oeu039378.1' => 'oeu', 'Oeu042056.3' => 'oeu', 'Oeu049505.1' => 'oeu', 'Os03g0353400' => 'osa', 'Os05g0344200' => 'osa', 'Os07g0661400' => 'osa', 'Peaxi162Scf00130g01128' => 'pax', 'Peaxi162Scf00284g00234' => 'pax', 'Peaxi162Scf01315g00112' => 'pax', 'PGR031G1848' => 'pgr', 'PGR142G1630' => 'pgr', 'PGSC0003DMG400007624' => 'stu', 'PGSC0003DMG400023945' => 'stu', 'PGSC0003DMG400029848' => 'stu', 'Phvul.001G127900' => 'pvu', 'Phvul.005G033200' => 'pvu', 'Phvul.008G219700' => 'pvu', 'Potri.001G023100' => 'ptr', 'Potri.003G202500' => 'ptr', 'Potri.006G044600' => 'ptr', 'Potri.008G074600' => 'ptr', 'Potri.010G182800' => 'ptr', 'Potri.016G041600' => 'ptr', 'Pp3c24_6320' => 'ppa', 'Pp3c8_13720' => 'ppa', 'Prupe.2G258200' => 'ppe', 'Prupe.7G049200' => 'ppe', 'Psat3g075720' => 'psa', 'Psat5g185000' => 'psa', 'Psat5g213440' => 'psa', 'PSO017G2937' => 'pso', 'PSO339G0109' => 'pso', 'PSO349G0302' => 'pso', 'PSO384G4363' => 'pso', 'QL04p013206' => 'qlo', 'QL07p004841' => 'qlo', 'QL08p064088' => 'qlo', 'QL08p064121' => 'qlo', 'RcHm_v2.0_Chr1g0371351' => 'rch', 'RcHm_v2.0_Chr2g0124241' => 'rch', 'Rhsim03G0148500' => 'rsi', 'Rhsim04G0108400' => 'rsi', 'Sabra01G0017400' => 'sbr', 'Sabra03G0149600' => 'sbr', 'Sabra06G0030800' => 'sbr', 'Sabra10G0140200' => 'sbr', 'SalBow1G7629' => 'sbo', 'SalBow3G0904' => 'sbo', 'SalBow6G0458' => 'sbo', 'Sc11g0005540' => 'sci', 'Sc19g0008420' => 'sci', 'Sc25g0005390' => 'sci', 'Sed0000241' => 'sed', 'Sed0006350' => 'sed', 'Sed0013824' => 'sed', 'Sed0014677' => 'sed', 'Sed0027929' => 'sed', 'SEGI_10877' => 'sgi', 'SEGI_35540' => 'sgi', 'SGA_v2.0_scaffold105G30344' => 'sas', 'SGA_v2.0_scaffold273G46407' => 'sas', 'SGA_v2.0_scaffold44G16651' => 'sas', 'SGA_v2.0_scaffold69G23135' => 'sas', 'SMO137G0126' => 'smo', 'Solyc04g017690.3' => 'sly', 'Solyc10g079820.2' => 'sly', 'Sopen04g008770' => 'spe', 'Sopen06g016260' => 'spe', 'Sopen10g030430' => 'spe', 'Sp4g23700' => 'spa', 'Sp7g12280' => 'spa', 'TAR623G0368' => 'tar', 'TAR623G1259' => 'tar', 'TAR623G1458' => 'tar', 'TAR623G1589' => 'tar', 'TAR623G1745' => 'tar', 'TAR633G2515' => 'tar', 'TAR636G1645' => 'tar', 'TAR636G2431' => 'tar', 'THA.LOC104803284' => 'tha', 'THA.LOC104816525' => 'tha', 'THA.LOC104819116' => 'tha', 'Thecc.04G137300' => 'tca', 'Thecc.05G144400' => 'tca', 'Thecc.10G008600' => 'tca', 'Thhalv10017353m.g' => 'esa', 'Thhalv10026475m.g' => 'esa', 'TPR.G31985' => 'tpr', 'TPR.G323' => 'tpr', 'TPR.G32722' => 'tpr', 'TWI09G1319' => 'twi', 'TWI53G0072' => 'twi', 'TWI73G0816' => 'twi', 'TWI74G1337' => 'twi', 'unitig_37.g12465' => 'ugi', 'unitig_46.g18738' => 'ugi', 'vmacro06913' => 'vma', 'vmacro09035' => 'vma', 'VMungo0647G1981' => 'vmu', 'VMungo1080G0442' => 'vmu', 'VMungo1383G3048' => 'vmu', 'Zm00001eb110880' => 'zma', 'Zm00001eb286310' => 'zma', 'Zm00001eb329900' => 'zma', 'Zm00001eb394600' => 'zma', 'Zm00001eb400880' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002215', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002215' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002215', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '303', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002215' ) ), 'genes' => array( 'A03p23270' => 'bna', 'A04p07860' => 'bna', 'A04p31610' => 'bna', 'Aa31LG1G23450' => 'aar', 'Aa31LG9G3120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1564' => 'aag', 'Actinidia17680' => 'ach', 'Actinidia33892' => 'ach', 'Actinidia38147' => 'ach', 'Ah.04g151290' => 'amhyb', 'Ah.13g076710' => 'amhyb', 'Ah.16g104020' => 'amhyb', 'AL4G39510' => 'aly', 'AL7G42040' => 'aly', 'Aqoxy2G00277' => 'aox', 'Aqoxy4G02187' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKS1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.914GI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHUR4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9D87U' => 'arhy', 'AT2G41430' => 'ath', 'AT4G14270' => 'ath', 'ATR0594G170' => 'atr', 'Atru.chr1.1249' => 'acertr', 'Atru.chr12.124' => 'acertr', 'AUR62012323' => 'cqu', 'AUR62022964' => 'cqu', 'AUR62026143' => 'cqu', 'AUR62030391' => 'cqu', 'BcaB01g03468' => 'bca', 'BcaB02g08623' => 'bca', 'BcaC01g05337' => 'bca', 'BcaC02g09339' => 'bca', 'BcaC02g12903' => 'bca', 'BcaC07g37611' => 'bca', 'BolC3t15147H' => 'bol', 'BolC4t25732H' => 'bol', 'BolC4t28401H' => 'bol', 'BraA03t11546Z' => 'bra', 'BraA04t16474Z' => 'bra', 'BraA04t18619Z' => 'bra', 'C03p27770' => 'bna', 'C04p41500' => 'bna', 'C04p69040' => 'bna', 'CAN.G1237.26' => 'can', 'CAN.G1656.11' => 'can', 'CAN.G252.13' => 'can', 'CANSAT56G1677' => 'cansat', 'CANSAT80G2732' => 'cansat', 'CARHR136550' => 'chi', 'CARHR220420' => 'chi', 'Carub.0004s1237' => 'cru', 'Carub.0004s2373' => 'cru', 'Carub.0007s2807' => 'cru', 'Ca_06009_v3' => 'car', 'Ca_08421_v3' => 'car', 'Ca_27049_v3' => 'car', 'Cc06_g18450' => 'ccan', 'CDE04G2823' => 'cde', 'CDE06G0538' => 'cde', 'CDE07G0432' => 'cde', 'CDE08G0507' => 'cde', 'CDE08G0586' => 'cde', 'CDE09G0498' => 'cde', 'Cfa001247' => 'cfa', 'Cfa016744' => 'cfa', 'Cfa016747' => 'cfa', 'Ciclev10006124m.g' => 'ccl', 'Ciclev10032949m.g' => 'ccl', 'Ciclev10033013m.g' => 'ccl', 'CiPaw.01G302900' => 'cil', 'CiPaw.09G043100' => 'cil', 'CiPaw.10G036900' => 'cil', 'ClCG01G007600' => 'cla', 'ClCG04G004160' => 'cla', 'ClCG11G005940' => 'cla', 'COL.COLO4_21285' => 'col', 'COL.COLO4_25812' => 'col', 'COL.COLO4_25842' => 'col', 'Cpa.g.sc19.111' => 'cpa', 'Cpa.g.sc197.11' => 'cpa', 'Cpa.g.sc5.215' => 'cpa', 'CsaV3_4G022030' => 'csa', 'CsaV3_5G024610' => 'csa', 'CsaV3_6G002060' => 'csa', 'CSS0029123' => 'camsi', 'CSS0042072' => 'camsi', 'DCAR_013620' => 'dca', 'DCAR_020532' => 'dca', 'DCAR_024798' => 'dca', 'DCAR_028559' => 'dca', 'Dinv10569' => 'din', 'Dinv18690' => 'din', 'Dinv21802' => 'din', 'Dinv30284' => 'din', 'Duzib106G1995' => 'dzi', 'Duzib128G1130' => 'dzi', 'Duzib128G1780' => 'dzi', 'Duzib128G1863' => 'dzi', 'ECA236G0753' => 'eca', 'ECA238G1451' => 'eca', 'ECA248G1014' => 'eca', 'EL10Ac2g04915' => 'bvu', 'EL10Ac3g07173' => 'bvu', 'Eucgr.A02291' => 'egr', 'Eucgr.G03104' => 'egr', 'FAN01G0927' => 'fan', 'FAN02G2615' => 'fan', 'FAN03G0867' => 'fan', 'FAN05G2790' => 'fan', 'FAN06G2085' => 'fan', 'FAN10G1531' => 'fan', 'FAN14G1505' => 'fan', 'FvH4_6g24790' => 'fve', 'FvH4_7g25400' => 'fve', 'Glyma.02G260800' => 'gma', 'Glyma.03G131900' => 'gma', 'Glyma.04G138600' => 'gma', 'Glyma.11G149900' => 'gma', 'Glyma.19G133800' => 'gma', 'Gohir.A05G332200' => 'ghi', 'Gohir.A13G002900' => 'ghi', 'Gohir.A13G013400' => 'ghi', 'Gohir.D04G070900' => 'ghi', 'Gohir.D13G002800' => 'ghi', 'Gohir.D13G014500' => 'ghi', 'Gorai.012G079800' => 'gra', 'Gorai.013G002700' => 'gra', 'Gorai.013G015700' => 'gra', 'GSVIVG01000857001' => 'vvi', 'GSVIVG01032732001' => 'vvi', 'GSVIVG01033561001' => 'vvi', 'HanXRQChr01g0008281' => 'han', 'HanXRQChr04g0124951' => 'han', 'HanXRQChr07g0203511' => 'han', 'Haze_03109' => 'cav', 'Haze_17303' => 'cav', 'Haze_19757' => 'cav', 'Haze_19759' => 'cav', 'Hma1.2p1_0056F.1_g031690' => 'hma', 'Hma1.2p1_1687F.1_g297530' => 'hma', 'HPP92_012480' => 'vpl', 'HPP92_013848' => 'vpl', 'HPP92_013862' => 'vpl', 'HPP92_014155' => 'vpl', 'HPP92_014175' => 'vpl', 'Hund13328' => 'sun', 'Hund13523' => 'sun', 'Hund19120' => 'sun', 'Lalb_Chr04g0250361' => 'lal', 'Lalb_Chr20g0110291' => 'lal', 'Lalb_Chr25g0282461' => 'lal', 'Lj1g0019573' => 'lja', 'Lj1P1118T20' => 'lonja', 'Lj1P1121T18' => 'lonja', 'Lj2P392T38' => 'lonja', 'Lj3g0009113' => 'lja', 'LjContig00357g0021340' => 'lja', 'Lsat_1_v5_gn_2_125820' => 'lsa', 'Lsat_1_v5_gn_5_160961' => 'lsa', 'Lsat_1_v5_gn_8_83020' => 'lsa', 'Manes.04G163900' => 'mes', 'Manes.07G136300' => 'mes', 'Manes.08G055000' => 'mes', 'Manes.09G010100' => 'mes', 'Mapoly0002s0342' => 'mpo', 'Mapoly0045s0059' => 'mpo', 'MBI03_g41402_MAGBIO' => 'mbi', 'MBI03_g43457_MAGBIO' => 'mbi', 'MD01G1160300' => 'mdo', 'MD07G1228500' => 'mdo', 'MD14G1081500' => 'mdo', 'Medtr3g023110' => 'mtr', 'Medtr5g083690' => 'mtr', 'Medtr7g090630' => 'mtr', 'MELO3C005136.2' => 'cme', 'MELO3C014211.2' => 'cme', 'MELO3C019981.2' => 'cme', 'Migut.F00617' => 'egut', 'Migut.J01696' => 'egut', 'Migut.K00114' => 'egut', 'MSTRG.19831' => 'ama', 'MSTRG.26141' => 'ama', 'MSTRG.6396' => 'ama', 'MSTRG.8913' => 'ama', 'Nitab4.5_0000562g0020' => 'nta', 'Nitab4.5_0000677g0040' => 'nta', 'Nitab4.5_0001291g0080' => 'nta', 'Nitab4.5_0001618g0080' => 'nta', 'Nitab4.5_0002854g0070' => 'nta', 'Nitab4.5_0008674g0020' => 'nta', 'Nn2g11033' => 'nnu', 'Nn2g14871' => 'nnu', 'Nn2g14878' => 'nnu', 'Nn2g15049' => 'nnu', 'Nn7g36454' => 'nnu', 'Oeu008185.2' => 'oeu', 'Oeu039378.1' => 'oeu', 'Oeu042056.3' => 'oeu', 'Oeu049505.1' => 'oeu', 'Os03g0353400' => 'osa', 'Os05g0344200' => 'osa', 'Os07g0661400' => 'osa', 'Peaxi162Scf00130g01128' => 'pax', 'Peaxi162Scf00284g00234' => 'pax', 'Peaxi162Scf01315g00112' => 'pax', 'PGR031G1848' => 'pgr', 'PGR142G1630' => 'pgr', 'PGSC0003DMG400007624' => 'stu', 'PGSC0003DMG400023945' => 'stu', 'PGSC0003DMG400029848' => 'stu', 'Phvul.001G127900' => 'pvu', 'Phvul.005G033200' => 'pvu', 'Phvul.008G219700' => 'pvu', 'Potri.001G023100' => 'ptr', 'Potri.003G202500' => 'ptr', 'Potri.006G044600' => 'ptr', 'Potri.008G074600' => 'ptr', 'Potri.010G182800' => 'ptr', 'Potri.016G041600' => 'ptr', 'Pp3c24_6320' => 'ppa', 'Pp3c8_13720' => 'ppa', 'Prupe.2G258200' => 'ppe', 'Prupe.7G049200' => 'ppe', 'Psat3g075720' => 'psa', 'Psat5g185000' => 'psa', 'Psat5g213440' => 'psa', 'PSO017G2937' => 'pso', 'PSO339G0109' => 'pso', 'PSO349G0302' => 'pso', 'PSO384G4363' => 'pso', 'QL04p013206' => 'qlo', 'QL07p004841' => 'qlo', 'QL08p064088' => 'qlo', 'QL08p064121' => 'qlo', 'RcHm_v2.0_Chr1g0371351' => 'rch', 'RcHm_v2.0_Chr2g0124241' => 'rch', 'Rhsim03G0148500' => 'rsi', 'Rhsim04G0108400' => 'rsi', 'Sabra01G0017400' => 'sbr', 'Sabra03G0149600' => 'sbr', 'Sabra06G0030800' => 'sbr', 'Sabra10G0140200' => 'sbr', 'SalBow1G7629' => 'sbo', 'SalBow3G0904' => 'sbo', 'SalBow6G0458' => 'sbo', 'Sc11g0005540' => 'sci', 'Sc19g0008420' => 'sci', 'Sc25g0005390' => 'sci', 'Sed0000241' => 'sed', 'Sed0006350' => 'sed', 'Sed0013824' => 'sed', 'Sed0014677' => 'sed', 'Sed0027929' => 'sed', 'SEGI_10877' => 'sgi', 'SEGI_35540' => 'sgi', 'SGA_v2.0_scaffold105G30344' => 'sas', 'SGA_v2.0_scaffold273G46407' => 'sas', 'SGA_v2.0_scaffold44G16651' => 'sas', 'SGA_v2.0_scaffold69G23135' => 'sas', 'SMO137G0126' => 'smo', 'Solyc04g017690.3' => 'sly', 'Solyc10g079820.2' => 'sly', 'Sopen04g008770' => 'spe', 'Sopen06g016260' => 'spe', 'Sopen10g030430' => 'spe', 'Sp4g23700' => 'spa', 'Sp7g12280' => 'spa', 'TAR623G0368' => 'tar', 'TAR623G1259' => 'tar', 'TAR623G1458' => 'tar', 'TAR623G1589' => 'tar', 'TAR623G1745' => 'tar', 'TAR633G2515' => 'tar', 'TAR636G1645' => 'tar', 'TAR636G2431' => 'tar', 'THA.LOC104803284' => 'tha', 'THA.LOC104816525' => 'tha', 'THA.LOC104819116' => 'tha', 'Thecc.04G137300' => 'tca', 'Thecc.05G144400' => 'tca', 'Thecc.10G008600' => 'tca', 'Thhalv10017353m.g' => 'esa', 'Thhalv10026475m.g' => 'esa', 'TPR.G31985' => 'tpr', 'TPR.G323' => 'tpr', 'TPR.G32722' => 'tpr', 'TWI09G1319' => 'twi', 'TWI53G0072' => 'twi', 'TWI73G0816' => 'twi', 'TWI74G1337' => 'twi', 'unitig_37.g12465' => 'ugi', 'unitig_46.g18738' => 'ugi', 'vmacro06913' => 'vma', 'vmacro09035' => 'vma', 'VMungo0647G1981' => 'vmu', 'VMungo1080G0442' => 'vmu', 'VMungo1383G3048' => 'vmu', 'Zm00001eb110880' => 'zma', 'Zm00001eb286310' => 'zma', 'Zm00001eb329900' => 'zma', 'Zm00001eb394600' => 'zma', 'Zm00001eb400880' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002215' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002215' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002215' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002215' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002215', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '303', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p23270' => 'bna', 'A04p07860' => 'bna', 'A04p31610' => 'bna', 'Aa31LG1G23450' => 'aar', 'Aa31LG9G3120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1564' => 'aag', 'Actinidia17680' => 'ach', 'Actinidia33892' => 'ach', 'Actinidia38147' => 'ach', 'Ah.04g151290' => 'amhyb', 'Ah.13g076710' => 'amhyb', 'Ah.16g104020' => 'amhyb', 'AL4G39510' => 'aly', 'AL7G42040' => 'aly', 'Aqoxy2G00277' => 'aox', 'Aqoxy4G02187' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKS1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.914GI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHUR4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9D87U' => 'arhy', 'AT2G41430' => 'ath', 'AT4G14270' => 'ath', 'ATR0594G170' => 'atr', 'Atru.chr1.1249' => 'acertr', 'Atru.chr12.124' => 'acertr', 'AUR62012323' => 'cqu', 'AUR62022964' => 'cqu', 'AUR62026143' => 'cqu', 'AUR62030391' => 'cqu', 'BcaB01g03468' => 'bca', 'BcaB02g08623' => 'bca', 'BcaC01g05337' => 'bca', 'BcaC02g09339' => 'bca', 'BcaC02g12903' => 'bca', 'BcaC07g37611' => 'bca', 'BolC3t15147H' => 'bol', 'BolC4t25732H' => 'bol', 'BolC4t28401H' => 'bol', 'BraA03t11546Z' => 'bra', 'BraA04t16474Z' => 'bra', 'BraA04t18619Z' => 'bra', 'C03p27770' => 'bna', 'C04p41500' => 'bna', 'C04p69040' => 'bna', 'CAN.G1237.26' => 'can', 'CAN.G1656.11' => 'can', 'CAN.G252.13' => 'can', 'CANSAT56G1677' => 'cansat', 'CANSAT80G2732' => 'cansat', 'CARHR136550' => 'chi', 'CARHR220420' => 'chi', 'Carub.0004s1237' => 'cru', 'Carub.0004s2373' => 'cru', 'Carub.0007s2807' => 'cru', 'Ca_06009_v3' => 'car', 'Ca_08421_v3' => 'car', 'Ca_27049_v3' => 'car', 'Cc06_g18450' => 'ccan', 'CDE04G2823' => 'cde', 'CDE06G0538' => 'cde', 'CDE07G0432' => 'cde', 'CDE08G0507' => 'cde', 'CDE08G0586' => 'cde', 'CDE09G0498' => 'cde', 'Cfa001247' => 'cfa', 'Cfa016744' => 'cfa', 'Cfa016747' => 'cfa', 'Ciclev10006124m.g' => 'ccl', 'Ciclev10032949m.g' => 'ccl', 'Ciclev10033013m.g' => 'ccl', 'CiPaw.01G302900' => 'cil', 'CiPaw.09G043100' => 'cil', 'CiPaw.10G036900' => 'cil', 'ClCG01G007600' => 'cla', 'ClCG04G004160' => 'cla', 'ClCG11G005940' => 'cla', 'COL.COLO4_21285' => 'col', 'COL.COLO4_25812' => 'col', 'COL.COLO4_25842' => 'col', 'Cpa.g.sc19.111' => 'cpa', 'Cpa.g.sc197.11' => 'cpa', 'Cpa.g.sc5.215' => 'cpa', 'CsaV3_4G022030' => 'csa', 'CsaV3_5G024610' => 'csa', 'CsaV3_6G002060' => 'csa', 'CSS0029123' => 'camsi', 'CSS0042072' => 'camsi', 'DCAR_013620' => 'dca', 'DCAR_020532' => 'dca', 'DCAR_024798' => 'dca', 'DCAR_028559' => 'dca', 'Dinv10569' => 'din', 'Dinv18690' => 'din', 'Dinv21802' => 'din', 'Dinv30284' => 'din', 'Duzib106G1995' => 'dzi', 'Duzib128G1130' => 'dzi', 'Duzib128G1780' => 'dzi', 'Duzib128G1863' => 'dzi', 'ECA236G0753' => 'eca', 'ECA238G1451' => 'eca', 'ECA248G1014' => 'eca', 'EL10Ac2g04915' => 'bvu', 'EL10Ac3g07173' => 'bvu', 'Eucgr.A02291' => 'egr', 'Eucgr.G03104' => 'egr', 'FAN01G0927' => 'fan', 'FAN02G2615' => 'fan', 'FAN03G0867' => 'fan', 'FAN05G2790' => 'fan', 'FAN06G2085' => 'fan', 'FAN10G1531' => 'fan', 'FAN14G1505' => 'fan', 'FvH4_6g24790' => 'fve', 'FvH4_7g25400' => 'fve', 'Glyma.02G260800' => 'gma', 'Glyma.03G131900' => 'gma', 'Glyma.04G138600' => 'gma', 'Glyma.11G149900' => 'gma', 'Glyma.19G133800' => 'gma', 'Gohir.A05G332200' => 'ghi', 'Gohir.A13G002900' => 'ghi', 'Gohir.A13G013400' => 'ghi', 'Gohir.D04G070900' => 'ghi', 'Gohir.D13G002800' => 'ghi', 'Gohir.D13G014500' => 'ghi', 'Gorai.012G079800' => 'gra', 'Gorai.013G002700' => 'gra', 'Gorai.013G015700' => 'gra', 'GSVIVG01000857001' => 'vvi', 'GSVIVG01032732001' => 'vvi', 'GSVIVG01033561001' => 'vvi', 'HanXRQChr01g0008281' => 'han', 'HanXRQChr04g0124951' => 'han', 'HanXRQChr07g0203511' => 'han', 'Haze_03109' => 'cav', 'Haze_17303' => 'cav', 'Haze_19757' => 'cav', 'Haze_19759' => 'cav', 'Hma1.2p1_0056F.1_g031690' => 'hma', 'Hma1.2p1_1687F.1_g297530' => 'hma', 'HPP92_012480' => 'vpl', 'HPP92_013848' => 'vpl', 'HPP92_013862' => 'vpl', 'HPP92_014155' => 'vpl', 'HPP92_014175' => 'vpl', 'Hund13328' => 'sun', 'Hund13523' => 'sun', 'Hund19120' => 'sun', 'Lalb_Chr04g0250361' => 'lal', 'Lalb_Chr20g0110291' => 'lal', 'Lalb_Chr25g0282461' => 'lal', 'Lj1g0019573' => 'lja', 'Lj1P1118T20' => 'lonja', 'Lj1P1121T18' => 'lonja', 'Lj2P392T38' => 'lonja', 'Lj3g0009113' => 'lja', 'LjContig00357g0021340' => 'lja', 'Lsat_1_v5_gn_2_125820' => 'lsa', 'Lsat_1_v5_gn_5_160961' => 'lsa', 'Lsat_1_v5_gn_8_83020' => 'lsa', 'Manes.04G163900' => 'mes', 'Manes.07G136300' => 'mes', 'Manes.08G055000' => 'mes', 'Manes.09G010100' => 'mes', 'Mapoly0002s0342' => 'mpo', 'Mapoly0045s0059' => 'mpo', 'MBI03_g41402_MAGBIO' => 'mbi', 'MBI03_g43457_MAGBIO' => 'mbi', 'MD01G1160300' => 'mdo', 'MD07G1228500' => 'mdo', 'MD14G1081500' => 'mdo', 'Medtr3g023110' => 'mtr', 'Medtr5g083690' => 'mtr', 'Medtr7g090630' => 'mtr', 'MELO3C005136.2' => 'cme', 'MELO3C014211.2' => 'cme', 'MELO3C019981.2' => 'cme', 'Migut.F00617' => 'egut', 'Migut.J01696' => 'egut', 'Migut.K00114' => 'egut', 'MSTRG.19831' => 'ama', 'MSTRG.26141' => 'ama', 'MSTRG.6396' => 'ama', 'MSTRG.8913' => 'ama', 'Nitab4.5_0000562g0020' => 'nta', 'Nitab4.5_0000677g0040' => 'nta', 'Nitab4.5_0001291g0080' => 'nta', 'Nitab4.5_0001618g0080' => 'nta', 'Nitab4.5_0002854g0070' => 'nta', 'Nitab4.5_0008674g0020' => 'nta', 'Nn2g11033' => 'nnu', 'Nn2g14871' => 'nnu', 'Nn2g14878' => 'nnu', 'Nn2g15049' => 'nnu', 'Nn7g36454' => 'nnu', 'Oeu008185.2' => 'oeu', 'Oeu039378.1' => 'oeu', 'Oeu042056.3' => 'oeu', 'Oeu049505.1' => 'oeu', 'Os03g0353400' => 'osa', 'Os05g0344200' => 'osa', 'Os07g0661400' => 'osa', 'Peaxi162Scf00130g01128' => 'pax', 'Peaxi162Scf00284g00234' => 'pax', 'Peaxi162Scf01315g00112' => 'pax', 'PGR031G1848' => 'pgr', 'PGR142G1630' => 'pgr', 'PGSC0003DMG400007624' => 'stu', 'PGSC0003DMG400023945' => 'stu', 'PGSC0003DMG400029848' => 'stu', 'Phvul.001G127900' => 'pvu', 'Phvul.005G033200' => 'pvu', 'Phvul.008G219700' => 'pvu', 'Potri.001G023100' => 'ptr', 'Potri.003G202500' => 'ptr', 'Potri.006G044600' => 'ptr', 'Potri.008G074600' => 'ptr', 'Potri.010G182800' => 'ptr', 'Potri.016G041600' => 'ptr', 'Pp3c24_6320' => 'ppa', 'Pp3c8_13720' => 'ppa', 'Prupe.2G258200' => 'ppe', 'Prupe.7G049200' => 'ppe', 'Psat3g075720' => 'psa', 'Psat5g185000' => 'psa', 'Psat5g213440' => 'psa', 'PSO017G2937' => 'pso', 'PSO339G0109' => 'pso', 'PSO349G0302' => 'pso', 'PSO384G4363' => 'pso', 'QL04p013206' => 'qlo', 'QL07p004841' => 'qlo', 'QL08p064088' => 'qlo', 'QL08p064121' => 'qlo', 'RcHm_v2.0_Chr1g0371351' => 'rch', 'RcHm_v2.0_Chr2g0124241' => 'rch', 'Rhsim03G0148500' => 'rsi', 'Rhsim04G0108400' => 'rsi', 'Sabra01G0017400' => 'sbr', 'Sabra03G0149600' => 'sbr', 'Sabra06G0030800' => 'sbr', 'Sabra10G0140200' => 'sbr', 'SalBow1G7629' => 'sbo', 'SalBow3G0904' => 'sbo', 'SalBow6G0458' => 'sbo', 'Sc11g0005540' => 'sci', 'Sc19g0008420' => 'sci', 'Sc25g0005390' => 'sci', 'Sed0000241' => 'sed', 'Sed0006350' => 'sed', 'Sed0013824' => 'sed', 'Sed0014677' => 'sed', 'Sed0027929' => 'sed', 'SEGI_10877' => 'sgi', 'SEGI_35540' => 'sgi', 'SGA_v2.0_scaffold105G30344' => 'sas', 'SGA_v2.0_scaffold273G46407' => 'sas', 'SGA_v2.0_scaffold44G16651' => 'sas', 'SGA_v2.0_scaffold69G23135' => 'sas', 'SMO137G0126' => 'smo', 'Solyc04g017690.3' => 'sly', 'Solyc10g079820.2' => 'sly', 'Sopen04g008770' => 'spe', 'Sopen06g016260' => 'spe', 'Sopen10g030430' => 'spe', 'Sp4g23700' => 'spa', 'Sp7g12280' => 'spa', 'TAR623G0368' => 'tar', 'TAR623G1259' => 'tar', 'TAR623G1458' => 'tar', 'TAR623G1589' => 'tar', 'TAR623G1745' => 'tar', 'TAR633G2515' => 'tar', 'TAR636G1645' => 'tar', 'TAR636G2431' => 'tar', 'THA.LOC104803284' => 'tha', 'THA.LOC104816525' => 'tha', 'THA.LOC104819116' => 'tha', 'Thecc.04G137300' => 'tca', 'Thecc.05G144400' => 'tca', 'Thecc.10G008600' => 'tca', 'Thhalv10017353m.g' => 'esa', 'Thhalv10026475m.g' => 'esa', 'TPR.G31985' => 'tpr', 'TPR.G323' => 'tpr', 'TPR.G32722' => 'tpr', 'TWI09G1319' => 'twi', 'TWI53G0072' => 'twi', 'TWI73G0816' => 'twi', 'TWI74G1337' => 'twi', 'unitig_37.g12465' => 'ugi', 'unitig_46.g18738' => 'ugi', 'vmacro06913' => 'vma', 'vmacro09035' => 'vma', 'VMungo0647G1981' => 'vmu', 'VMungo1080G0442' => 'vmu', 'VMungo1383G3048' => 'vmu', 'Zm00001eb110880' => 'zma', 'Zm00001eb286310' => 'zma', 'Zm00001eb329900' => 'zma', 'Zm00001eb394600' => 'zma', 'Zm00001eb400880' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002215', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002215' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002215', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '303', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002215' ) ), 'genes' => array( 'A03p23270' => 'bna', 'A04p07860' => 'bna', 'A04p31610' => 'bna', 'Aa31LG1G23450' => 'aar', 'Aa31LG9G3120' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1564' => 'aag', 'Actinidia17680' => 'ach', 'Actinidia33892' => 'ach', 'Actinidia38147' => 'ach', 'Ah.04g151290' => 'amhyb', 'Ah.13g076710' => 'amhyb', 'Ah.16g104020' => 'amhyb', 'AL4G39510' => 'aly', 'AL7G42040' => 'aly', 'Aqoxy2G00277' => 'aox', 'Aqoxy4G02187' => 'aox', 'arahy.Tifrunner.gnm1.ann1.8SKS1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.914GI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MHUR4I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9D87U' => 'arhy', 'AT2G41430' => 'ath', 'AT4G14270' => 'ath', 'ATR0594G170' => 'atr', 'Atru.chr1.1249' => 'acertr', 'Atru.chr12.124' => 'acertr', 'AUR62012323' => 'cqu', 'AUR62022964' => 'cqu', 'AUR62026143' => 'cqu', 'AUR62030391' => 'cqu', 'BcaB01g03468' => 'bca', 'BcaB02g08623' => 'bca', 'BcaC01g05337' => 'bca', 'BcaC02g09339' => 'bca', 'BcaC02g12903' => 'bca', 'BcaC07g37611' => 'bca', 'BolC3t15147H' => 'bol', 'BolC4t25732H' => 'bol', 'BolC4t28401H' => 'bol', 'BraA03t11546Z' => 'bra', 'BraA04t16474Z' => 'bra', 'BraA04t18619Z' => 'bra', 'C03p27770' => 'bna', 'C04p41500' => 'bna', 'C04p69040' => 'bna', 'CAN.G1237.26' => 'can', 'CAN.G1656.11' => 'can', 'CAN.G252.13' => 'can', 'CANSAT56G1677' => 'cansat', 'CANSAT80G2732' => 'cansat', 'CARHR136550' => 'chi', 'CARHR220420' => 'chi', 'Carub.0004s1237' => 'cru', 'Carub.0004s2373' => 'cru', 'Carub.0007s2807' => 'cru', 'Ca_06009_v3' => 'car', 'Ca_08421_v3' => 'car', 'Ca_27049_v3' => 'car', 'Cc06_g18450' => 'ccan', 'CDE04G2823' => 'cde', 'CDE06G0538' => 'cde', 'CDE07G0432' => 'cde', 'CDE08G0507' => 'cde', 'CDE08G0586' => 'cde', 'CDE09G0498' => 'cde', 'Cfa001247' => 'cfa', 'Cfa016744' => 'cfa', 'Cfa016747' => 'cfa', 'Ciclev10006124m.g' => 'ccl', 'Ciclev10032949m.g' => 'ccl', 'Ciclev10033013m.g' => 'ccl', 'CiPaw.01G302900' => 'cil', 'CiPaw.09G043100' => 'cil', 'CiPaw.10G036900' => 'cil', 'ClCG01G007600' => 'cla', 'ClCG04G004160' => 'cla', 'ClCG11G005940' => 'cla', 'COL.COLO4_21285' => 'col', 'COL.COLO4_25812' => 'col', 'COL.COLO4_25842' => 'col', 'Cpa.g.sc19.111' => 'cpa', 'Cpa.g.sc197.11' => 'cpa', 'Cpa.g.sc5.215' => 'cpa', 'CsaV3_4G022030' => 'csa', 'CsaV3_5G024610' => 'csa', 'CsaV3_6G002060' => 'csa', 'CSS0029123' => 'camsi', 'CSS0042072' => 'camsi', 'DCAR_013620' => 'dca', 'DCAR_020532' => 'dca', 'DCAR_024798' => 'dca', 'DCAR_028559' => 'dca', 'Dinv10569' => 'din', 'Dinv18690' => 'din', 'Dinv21802' => 'din', 'Dinv30284' => 'din', 'Duzib106G1995' => 'dzi', 'Duzib128G1130' => 'dzi', 'Duzib128G1780' => 'dzi', 'Duzib128G1863' => 'dzi', 'ECA236G0753' => 'eca', 'ECA238G1451' => 'eca', 'ECA248G1014' => 'eca', 'EL10Ac2g04915' => 'bvu', 'EL10Ac3g07173' => 'bvu', 'Eucgr.A02291' => 'egr', 'Eucgr.G03104' => 'egr', 'FAN01G0927' => 'fan', 'FAN02G2615' => 'fan', 'FAN03G0867' => 'fan', 'FAN05G2790' => 'fan', 'FAN06G2085' => 'fan', 'FAN10G1531' => 'fan', 'FAN14G1505' => 'fan', 'FvH4_6g24790' => 'fve', 'FvH4_7g25400' => 'fve', 'Glyma.02G260800' => 'gma', 'Glyma.03G131900' => 'gma', 'Glyma.04G138600' => 'gma', 'Glyma.11G149900' => 'gma', 'Glyma.19G133800' => 'gma', 'Gohir.A05G332200' => 'ghi', 'Gohir.A13G002900' => 'ghi', 'Gohir.A13G013400' => 'ghi', 'Gohir.D04G070900' => 'ghi', 'Gohir.D13G002800' => 'ghi', 'Gohir.D13G014500' => 'ghi', 'Gorai.012G079800' => 'gra', 'Gorai.013G002700' => 'gra', 'Gorai.013G015700' => 'gra', 'GSVIVG01000857001' => 'vvi', 'GSVIVG01032732001' => 'vvi', 'GSVIVG01033561001' => 'vvi', 'HanXRQChr01g0008281' => 'han', 'HanXRQChr04g0124951' => 'han', 'HanXRQChr07g0203511' => 'han', 'Haze_03109' => 'cav', 'Haze_17303' => 'cav', 'Haze_19757' => 'cav', 'Haze_19759' => 'cav', 'Hma1.2p1_0056F.1_g031690' => 'hma', 'Hma1.2p1_1687F.1_g297530' => 'hma', 'HPP92_012480' => 'vpl', 'HPP92_013848' => 'vpl', 'HPP92_013862' => 'vpl', 'HPP92_014155' => 'vpl', 'HPP92_014175' => 'vpl', 'Hund13328' => 'sun', 'Hund13523' => 'sun', 'Hund19120' => 'sun', 'Lalb_Chr04g0250361' => 'lal', 'Lalb_Chr20g0110291' => 'lal', 'Lalb_Chr25g0282461' => 'lal', 'Lj1g0019573' => 'lja', 'Lj1P1118T20' => 'lonja', 'Lj1P1121T18' => 'lonja', 'Lj2P392T38' => 'lonja', 'Lj3g0009113' => 'lja', 'LjContig00357g0021340' => 'lja', 'Lsat_1_v5_gn_2_125820' => 'lsa', 'Lsat_1_v5_gn_5_160961' => 'lsa', 'Lsat_1_v5_gn_8_83020' => 'lsa', 'Manes.04G163900' => 'mes', 'Manes.07G136300' => 'mes', 'Manes.08G055000' => 'mes', 'Manes.09G010100' => 'mes', 'Mapoly0002s0342' => 'mpo', 'Mapoly0045s0059' => 'mpo', 'MBI03_g41402_MAGBIO' => 'mbi', 'MBI03_g43457_MAGBIO' => 'mbi', 'MD01G1160300' => 'mdo', 'MD07G1228500' => 'mdo', 'MD14G1081500' => 'mdo', 'Medtr3g023110' => 'mtr', 'Medtr5g083690' => 'mtr', 'Medtr7g090630' => 'mtr', 'MELO3C005136.2' => 'cme', 'MELO3C014211.2' => 'cme', 'MELO3C019981.2' => 'cme', 'Migut.F00617' => 'egut', 'Migut.J01696' => 'egut', 'Migut.K00114' => 'egut', 'MSTRG.19831' => 'ama', 'MSTRG.26141' => 'ama', 'MSTRG.6396' => 'ama', 'MSTRG.8913' => 'ama', 'Nitab4.5_0000562g0020' => 'nta', 'Nitab4.5_0000677g0040' => 'nta', 'Nitab4.5_0001291g0080' => 'nta', 'Nitab4.5_0001618g0080' => 'nta', 'Nitab4.5_0002854g0070' => 'nta', 'Nitab4.5_0008674g0020' => 'nta', 'Nn2g11033' => 'nnu', 'Nn2g14871' => 'nnu', 'Nn2g14878' => 'nnu', 'Nn2g15049' => 'nnu', 'Nn7g36454' => 'nnu', 'Oeu008185.2' => 'oeu', 'Oeu039378.1' => 'oeu', 'Oeu042056.3' => 'oeu', 'Oeu049505.1' => 'oeu', 'Os03g0353400' => 'osa', 'Os05g0344200' => 'osa', 'Os07g0661400' => 'osa', 'Peaxi162Scf00130g01128' => 'pax', 'Peaxi162Scf00284g00234' => 'pax', 'Peaxi162Scf01315g00112' => 'pax', 'PGR031G1848' => 'pgr', 'PGR142G1630' => 'pgr', 'PGSC0003DMG400007624' => 'stu', 'PGSC0003DMG400023945' => 'stu', 'PGSC0003DMG400029848' => 'stu', 'Phvul.001G127900' => 'pvu', 'Phvul.005G033200' => 'pvu', 'Phvul.008G219700' => 'pvu', 'Potri.001G023100' => 'ptr', 'Potri.003G202500' => 'ptr', 'Potri.006G044600' => 'ptr', 'Potri.008G074600' => 'ptr', 'Potri.010G182800' => 'ptr', 'Potri.016G041600' => 'ptr', 'Pp3c24_6320' => 'ppa', 'Pp3c8_13720' => 'ppa', 'Prupe.2G258200' => 'ppe', 'Prupe.7G049200' => 'ppe', 'Psat3g075720' => 'psa', 'Psat5g185000' => 'psa', 'Psat5g213440' => 'psa', 'PSO017G2937' => 'pso', 'PSO339G0109' => 'pso', 'PSO349G0302' => 'pso', 'PSO384G4363' => 'pso', 'QL04p013206' => 'qlo', 'QL07p004841' => 'qlo', 'QL08p064088' => 'qlo', 'QL08p064121' => 'qlo', 'RcHm_v2.0_Chr1g0371351' => 'rch', 'RcHm_v2.0_Chr2g0124241' => 'rch', 'Rhsim03G0148500' => 'rsi', 'Rhsim04G0108400' => 'rsi', 'Sabra01G0017400' => 'sbr', 'Sabra03G0149600' => 'sbr', 'Sabra06G0030800' => 'sbr', 'Sabra10G0140200' => 'sbr', 'SalBow1G7629' => 'sbo', 'SalBow3G0904' => 'sbo', 'SalBow6G0458' => 'sbo', 'Sc11g0005540' => 'sci', 'Sc19g0008420' => 'sci', 'Sc25g0005390' => 'sci', 'Sed0000241' => 'sed', 'Sed0006350' => 'sed', 'Sed0013824' => 'sed', 'Sed0014677' => 'sed', 'Sed0027929' => 'sed', 'SEGI_10877' => 'sgi', 'SEGI_35540' => 'sgi', 'SGA_v2.0_scaffold105G30344' => 'sas', 'SGA_v2.0_scaffold273G46407' => 'sas', 'SGA_v2.0_scaffold44G16651' => 'sas', 'SGA_v2.0_scaffold69G23135' => 'sas', 'SMO137G0126' => 'smo', 'Solyc04g017690.3' => 'sly', 'Solyc10g079820.2' => 'sly', 'Sopen04g008770' => 'spe', 'Sopen06g016260' => 'spe', 'Sopen10g030430' => 'spe', 'Sp4g23700' => 'spa', 'Sp7g12280' => 'spa', 'TAR623G0368' => 'tar', 'TAR623G1259' => 'tar', 'TAR623G1458' => 'tar', 'TAR623G1589' => 'tar', 'TAR623G1745' => 'tar', 'TAR633G2515' => 'tar', 'TAR636G1645' => 'tar', 'TAR636G2431' => 'tar', 'THA.LOC104803284' => 'tha', 'THA.LOC104816525' => 'tha', 'THA.LOC104819116' => 'tha', 'Thecc.04G137300' => 'tca', 'Thecc.05G144400' => 'tca', 'Thecc.10G008600' => 'tca', 'Thhalv10017353m.g' => 'esa', 'Thhalv10026475m.g' => 'esa', 'TPR.G31985' => 'tpr', 'TPR.G323' => 'tpr', 'TPR.G32722' => 'tpr', 'TWI09G1319' => 'twi', 'TWI53G0072' => 'twi', 'TWI73G0816' => 'twi', 'TWI74G1337' => 'twi', 'unitig_37.g12465' => 'ugi', 'unitig_46.g18738' => 'ugi', 'vmacro06913' => 'vma', 'vmacro09035' => 'vma', 'VMungo0647G1981' => 'vmu', 'VMungo1080G0442' => 'vmu', 'VMungo1383G3048' => 'vmu', 'Zm00001eb110880' => 'zma', 'Zm00001eb286310' => 'zma', 'Zm00001eb329900' => 'zma', 'Zm00001eb394600' => 'zma', 'Zm00001eb400880' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002215' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002215' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002215' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002215' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151