Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002163', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '310', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p31530' => 'bna', 'A04p07830' => 'bna', 'A07p08850' => 'bna', 'A08p12910' => 'bna', 'A08p24320' => 'bna', 'Aa31LG8G9990' => 'aar', 'Aa31LG9G3080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.916' => 'aag', 'Actinidia23464' => 'ach', 'Actinidia26624' => 'ach', 'Actinidia40201' => 'ach', 'Ah.14g087330' => 'amhyb', 'AL3G28580' => 'aly', 'AL3G38200' => 'aly', 'AL7G37580' => 'aly', 'AL7G42000' => 'aly', 'Aqoxy2G03228' => 'aox', 'Aqoxy4G02257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6H6MU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I5575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6FGN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGPF18' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG4QKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNA207' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT40GI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NP1GNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD899G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q67FBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2BILM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0GQ55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVK5KU' => 'arhy', 'AT3G23540' => 'ath', 'AT4G14290' => 'ath', 'AT4G17150' => 'ath', 'ATR0626G027' => 'atr', 'ATR0751G113' => 'atr', 'Atru.chr1.2207' => 'acertr', 'Atru.chr1.2226' => 'acertr', 'Atru.chr4.2667' => 'acertr', 'Atru.chr4.2668' => 'acertr', 'AUR62015194' => 'cqu', 'AUR62021798' => 'cqu', 'AUR62022512' => 'cqu', 'AUR62038384' => 'cqu', 'BcaB02g08621' => 'bca', 'BcaB04g18400' => 'bca', 'BcaB04g20445' => 'bca', 'BcaB06g26503' => 'bca', 'BcaB06g26504' => 'bca', 'BcaC02g09336' => 'bca', 'BcaC06g35538' => 'bca', 'BcaC07g38053' => 'bca', 'BolC1t03984H' => 'bol', 'BolC3t19944H' => 'bol', 'BolC4t25728H' => 'bol', 'BolC7t41866H' => 'bol', 'BolC8t48438H' => 'bol', 'BraA01t03283Z' => 'bra', 'BraA04t16471Z' => 'bra', 'BraA07t28676Z' => 'bra', 'BraA08t33274Z' => 'bra', 'BraA08t34387Z' => 'bra', 'C01p40230' => 'bna', 'C03p76890' => 'bna', 'C04p41460' => 'bna', 'C07p13710' => 'bna', 'CAN.G1456.14' => 'can', 'CAN.G522.7' => 'can', 'CANSAT78G1916' => 'cansat', 'CARHR099440' => 'chi', 'CARHR220470' => 'chi', 'CARHR223720' => 'chi', 'Carub.0003s2374' => 'cru', 'Carub.0007s2426' => 'cru', 'Carub.0007s2802' => 'cru', 'Ca_00609_v3' => 'car', 'Ca_13512_v3' => 'car', 'Ca_13516_v3' => 'car', 'Ca_21577_v3' => 'car', 'Ca_24686_v3' => 'car', 'Ca_28266_v3' => 'car', 'Ca_29751_v3' => 'car', 'CBR_g17709' => 'cbr', 'Cc03_g02950' => 'ccan', 'Cc09_g00070' => 'ccan', 'CDE02G3163' => 'cde', 'CDE05G0361' => 'cde', 'CDE05G2023' => 'cde', 'CDE05G3653' => 'cde', 'CDE11G0556' => 'cde', 'Cfa015556' => 'cfa', 'Cfa021531' => 'cfa', 'Ciclev10004606m.g' => 'ccl', 'Ciclev10015057m.g' => 'ccl', 'CiPaw.01G158100' => 'cil', 'CiPaw.02G090500' => 'cil', 'CiPaw.09G113100' => 'cil', 'CiPaw.10G085000' => 'cil', 'ClCG01G021010' => 'cla', 'ClCG06G005700' => 'cla', 'COL.COLO4_21623' => 'col', 'COL.COLO4_21624' => 'col', 'COL.COLO4_31968' => 'col', 'Cpa.g.sc16.49' => 'cpa', 'Cpa.g.sc27.184' => 'cpa', 'Cre07.g328950' => 'cre', 'CsaV3_6G005450' => 'csa', 'CsaV3_6G048000' => 'csa', 'CSS0003902' => 'camsi', 'CSS0016196' => 'camsi', 'CSS0021898' => 'camsi', 'CSS0027112' => 'camsi', 'CSS0044954' => 'camsi', 'CSS0044955' => 'camsi', 'DCAR_000334' => 'dca', 'DCAR_002423' => 'dca', 'DCAR_005489' => 'dca', 'Dinv04378' => 'din', 'Dinv14850' => 'din', 'Dinv16916' => 'din', 'Dinv44468' => 'din', 'Duzib151G1139' => 'dzi', 'Duzib192G1072' => 'dzi', 'Duzib212G0564' => 'dzi', 'ECA150G0003' => 'eca', 'ECA234G3826' => 'eca', 'EL10Ac8g20281' => 'bvu', 'EL10As19g24188' => 'bvu', 'Eucgr.B01162' => 'egr', 'Eucgr.E04233' => 'egr', 'FAN07G2289' => 'fan', 'FAN12G2278' => 'fan', 'FAN21G3334' => 'fan', 'FAN22G0102' => 'fan', 'FAN25G3252' => 'fan', 'FvH4_3g00060' => 'fve', 'FvH4_4g14200' => 'fve', 'Glyma.02G139950' => 'gma', 'Glyma.04G137300' => 'gma', 'Glyma.07G255200' => 'gma', 'Glyma.07G270200' => 'gma', 'Glyma.09G017500' => 'gma', 'Glyma.13G210700' => 'gma', 'Glyma.15G102100' => 'gma', 'Glyma.15G123200' => 'gma', 'Glyma.17G003700' => 'gma', 'Glyma.17G019100' => 'gma', 'Gohir.A05G177100' => 'ghi', 'Gohir.A10G115700' => 'ghi', 'Gohir.D05G180500' => 'ghi', 'Gohir.D10G150800' => 'ghi', 'Gorai.009G185500' => 'gra', 'Gorai.011G168000' => 'gra', 'GSVIVG01007067001' => 'vvi', 'GSVIVG01017869001' => 'vvi', 'HanXRQChr10g0310201' => 'han', 'HanXRQChr12g0359451' => 'han', 'HanXRQChr15g0470191' => 'han', 'Haze_00985' => 'cav', 'Haze_07062' => 'cav', 'Haze_07063' => 'cav', 'Hma1.2p1_0394F.1_g143410' => 'hma', 'Hma1.2p1_0511F.1_g169150' => 'hma', 'HPP92_012061' => 'vpl', 'HPP92_012078' => 'vpl', 'HPP92_021919' => 'vpl', 'HPP92_027044' => 'vpl', 'Hund12556' => 'sun', 'Lalb_Chr07g0177421' => 'lal', 'Lalb_Chr13g0304411' => 'lal', 'Lalb_Chr15g0088461' => 'lal', 'Lalb_Chr18g0057571' => 'lal', 'Lalb_Chr20g0118331' => 'lal', 'Lj2C254G8' => 'lonja', 'Lj4g0014611' => 'lja', 'Lj4g0028246' => 'lja', 'Lj6C664T14' => 'lonja', 'Lj6g0027253' => 'lja', 'Lj6g0027793' => 'lja', 'Lsat_1_v5_gn_5_78420' => 'lsa', 'Lsat_1_v5_gn_8_110041' => 'lsa', 'Manes.03G186500' => 'mes', 'Manes.08G014800' => 'mes', 'Manes.15G021600' => 'mes', 'Mapoly0016s0015' => 'mpo', 'MBI14_g12728_MAGBIO' => 'mbi', 'MBI15_g26854_MAGBIO' => 'mbi', 'MBI17_g29605_MAGBIO' => 'mbi', 'MCO09G851' => 'mco', 'MD05G1364500' => 'mdo', 'MD10G1342200' => 'mdo', 'MD10G1342300' => 'mdo', 'MD13G1180700' => 'mdo', 'MD16G1181400' => 'mdo', 'Medtr2g021260' => 'mtr', 'Medtr2g027870' => 'mtr', 'Medtr4g117570' => 'mtr', 'Medtr4g134350' => 'mtr', 'MELO3C007987.2' => 'cme', 'MELO3C021392.2' => 'cme', 'Migut.M01480' => 'egut', 'Migut.N00141' => 'egut', 'MSTRG.16076' => 'ama', 'MSTRG.21828' => 'ama', 'MSTRG.24761' => 'ama', 'MSTRG.7106' => 'ama', 'Nitab4.5_0000147g0120' => 'nta', 'Nitab4.5_0001663g0220' => 'nta', 'Nitab4.5_0006569g0040' => 'nta', 'Nn1g02133' => 'nnu', 'Nn1g07647' => 'nnu', 'Nn4g26155' => 'nnu', 'Oeu016930.1' => 'oeu', 'Oeu017918.1' => 'oeu', 'Oeu023654.1' => 'oeu', 'Oeu037670.3' => 'oeu', 'Os02g0197900' => 'osa', 'Os03g0359000' => 'osa', 'Os06g0609700' => 'osa', 'Peaxi162Scf00095g00087' => 'pax', 'Peaxi162Scf00563g00526' => 'pax', 'PGR004G1581' => 'pgr', 'PGR031G2583' => 'pgr', 'PGR042G0848' => 'pgr', 'PGSC0003DMG400004348' => 'stu', 'PGSC0003DMG400027260' => 'stu', 'Phvul.003G089300' => 'pvu', 'Phvul.003G096200' => 'pvu', 'Phvul.006G134600' => 'pvu', 'Phvul.006G155700' => 'pvu', 'Potri.006G000700' => 'ptr', 'Potri.008G200400' => 'ptr', 'Potri.010G029200' => 'ptr', 'Potri.016G001000' => 'ptr', 'Pp3c12_23220' => 'ppa', 'Pp3c4_3670' => 'ppa', 'PRCOL_00003839' => 'pco', 'Prupe.1G148800' => 'ppe', 'Prupe.4G000500' => 'ppe', 'Psat0s2550g0040' => 'psa', 'Psat1g148640' => 'psa', 'Psat1g171320' => 'psa', 'Psat1g184880' => 'psa', 'Psat4g030600' => 'psa', 'Psat5g259880' => 'psa', 'PSO170G6742' => 'pso', 'PSO407G0235' => 'pso', 'PSO541G0268' => 'pso', 'PSO675G8732' => 'pso', 'QL05p066200' => 'qlo', 'QL06p005887' => 'qlo', 'RcHm_v2.0_Chr4g0419001' => 'rch', 'RcHm_v2.0_Chr5g0000061' => 'rch', 'Rhsim02G0087600' => 'rsi', 'Sabra06G0000900' => 'sbr', 'Sabra10G0011900' => 'sbr', 'Sabra16G0007700' => 'sbr', 'SalBow8G3928' => 'sbo', 'Sc19g0004670' => 'sci', 'Sc24g0000030' => 'sci', 'Sc24g0000500' => 'sci', 'Sed0007994' => 'sed', 'Sed0008129' => 'sed', 'SEGI_01934' => 'sgi', 'SEGI_03497' => 'sgi', 'SEGI_23486' => 'sgi', 'SGA_v2.0_scaffold107G30773' => 'sas', 'SGA_v2.0_scaffold166G38387' => 'sas', 'SGA_v2.0_scaffold7G03652' => 'sas', 'SMO118G0161' => 'smo', 'Solyc01g080270.3' => 'sly', 'Solyc04g015300.3' => 'sly', 'Sopen01g032060' => 'spe', 'Sopen04g007380' => 'spe', 'Sp3g21200' => 'spa', 'Sp7g12300' => 'spa', 'Sp7g17040' => 'spa', 'TAR362G0597' => 'tar', 'TAR624G1228' => 'tar', 'TAR626G0216' => 'tar', 'TAR626G1613' => 'tar', 'TAR636G1144' => 'tar', 'THA.LOC104806750' => 'tha', 'THA.LOC104808656' => 'tha', 'Thecc.04G219300' => 'tca', 'Thecc.06G244600' => 'tca', 'Thhalv10020399m.g' => 'esa', 'Thhalv10024836m.g' => 'esa', 'Thhalv10027147m.g' => 'esa', 'TPR.G10484' => 'tpr', 'TPR.G20137' => 'tpr', 'TPR.G28917' => 'tpr', 'TPR.G5952' => 'tpr', 'TWI53G0188' => 'twi', 'TWI63G0140' => 'twi', 'TWI73G1105' => 'twi', 'unitig_32.g10791' => 'ugi', 'unitig_32.g11407' => 'ugi', 'unitig_748.g7615' => 'ugi', 'unitig_748.g8354' => 'ugi', 'vmacro08253' => 'vma', 'vmacro15707' => 'vma', 'VMungo0540G1913' => 'vmu', 'VMungo0540G1948' => 'vmu', 'VMungo0647G0037' => 'vmu', 'VMungo1215G0347' => 'vmu', 'VMungo1215G0371' => 'vmu', 'Zm00001eb017460' => 'zma', 'Zm00001eb236070' => 'zma', 'Zm00001eb276160' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002163', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002163' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002163', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '310', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002163' ) ), 'genes' => array( 'A01p31530' => 'bna', 'A04p07830' => 'bna', 'A07p08850' => 'bna', 'A08p12910' => 'bna', 'A08p24320' => 'bna', 'Aa31LG8G9990' => 'aar', 'Aa31LG9G3080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.916' => 'aag', 'Actinidia23464' => 'ach', 'Actinidia26624' => 'ach', 'Actinidia40201' => 'ach', 'Ah.14g087330' => 'amhyb', 'AL3G28580' => 'aly', 'AL3G38200' => 'aly', 'AL7G37580' => 'aly', 'AL7G42000' => 'aly', 'Aqoxy2G03228' => 'aox', 'Aqoxy4G02257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6H6MU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I5575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6FGN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGPF18' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG4QKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNA207' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT40GI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NP1GNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD899G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q67FBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2BILM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0GQ55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVK5KU' => 'arhy', 'AT3G23540' => 'ath', 'AT4G14290' => 'ath', 'AT4G17150' => 'ath', 'ATR0626G027' => 'atr', 'ATR0751G113' => 'atr', 'Atru.chr1.2207' => 'acertr', 'Atru.chr1.2226' => 'acertr', 'Atru.chr4.2667' => 'acertr', 'Atru.chr4.2668' => 'acertr', 'AUR62015194' => 'cqu', 'AUR62021798' => 'cqu', 'AUR62022512' => 'cqu', 'AUR62038384' => 'cqu', 'BcaB02g08621' => 'bca', 'BcaB04g18400' => 'bca', 'BcaB04g20445' => 'bca', 'BcaB06g26503' => 'bca', 'BcaB06g26504' => 'bca', 'BcaC02g09336' => 'bca', 'BcaC06g35538' => 'bca', 'BcaC07g38053' => 'bca', 'BolC1t03984H' => 'bol', 'BolC3t19944H' => 'bol', 'BolC4t25728H' => 'bol', 'BolC7t41866H' => 'bol', 'BolC8t48438H' => 'bol', 'BraA01t03283Z' => 'bra', 'BraA04t16471Z' => 'bra', 'BraA07t28676Z' => 'bra', 'BraA08t33274Z' => 'bra', 'BraA08t34387Z' => 'bra', 'C01p40230' => 'bna', 'C03p76890' => 'bna', 'C04p41460' => 'bna', 'C07p13710' => 'bna', 'CAN.G1456.14' => 'can', 'CAN.G522.7' => 'can', 'CANSAT78G1916' => 'cansat', 'CARHR099440' => 'chi', 'CARHR220470' => 'chi', 'CARHR223720' => 'chi', 'Carub.0003s2374' => 'cru', 'Carub.0007s2426' => 'cru', 'Carub.0007s2802' => 'cru', 'Ca_00609_v3' => 'car', 'Ca_13512_v3' => 'car', 'Ca_13516_v3' => 'car', 'Ca_21577_v3' => 'car', 'Ca_24686_v3' => 'car', 'Ca_28266_v3' => 'car', 'Ca_29751_v3' => 'car', 'CBR_g17709' => 'cbr', 'Cc03_g02950' => 'ccan', 'Cc09_g00070' => 'ccan', 'CDE02G3163' => 'cde', 'CDE05G0361' => 'cde', 'CDE05G2023' => 'cde', 'CDE05G3653' => 'cde', 'CDE11G0556' => 'cde', 'Cfa015556' => 'cfa', 'Cfa021531' => 'cfa', 'Ciclev10004606m.g' => 'ccl', 'Ciclev10015057m.g' => 'ccl', 'CiPaw.01G158100' => 'cil', 'CiPaw.02G090500' => 'cil', 'CiPaw.09G113100' => 'cil', 'CiPaw.10G085000' => 'cil', 'ClCG01G021010' => 'cla', 'ClCG06G005700' => 'cla', 'COL.COLO4_21623' => 'col', 'COL.COLO4_21624' => 'col', 'COL.COLO4_31968' => 'col', 'Cpa.g.sc16.49' => 'cpa', 'Cpa.g.sc27.184' => 'cpa', 'Cre07.g328950' => 'cre', 'CsaV3_6G005450' => 'csa', 'CsaV3_6G048000' => 'csa', 'CSS0003902' => 'camsi', 'CSS0016196' => 'camsi', 'CSS0021898' => 'camsi', 'CSS0027112' => 'camsi', 'CSS0044954' => 'camsi', 'CSS0044955' => 'camsi', 'DCAR_000334' => 'dca', 'DCAR_002423' => 'dca', 'DCAR_005489' => 'dca', 'Dinv04378' => 'din', 'Dinv14850' => 'din', 'Dinv16916' => 'din', 'Dinv44468' => 'din', 'Duzib151G1139' => 'dzi', 'Duzib192G1072' => 'dzi', 'Duzib212G0564' => 'dzi', 'ECA150G0003' => 'eca', 'ECA234G3826' => 'eca', 'EL10Ac8g20281' => 'bvu', 'EL10As19g24188' => 'bvu', 'Eucgr.B01162' => 'egr', 'Eucgr.E04233' => 'egr', 'FAN07G2289' => 'fan', 'FAN12G2278' => 'fan', 'FAN21G3334' => 'fan', 'FAN22G0102' => 'fan', 'FAN25G3252' => 'fan', 'FvH4_3g00060' => 'fve', 'FvH4_4g14200' => 'fve', 'Glyma.02G139950' => 'gma', 'Glyma.04G137300' => 'gma', 'Glyma.07G255200' => 'gma', 'Glyma.07G270200' => 'gma', 'Glyma.09G017500' => 'gma', 'Glyma.13G210700' => 'gma', 'Glyma.15G102100' => 'gma', 'Glyma.15G123200' => 'gma', 'Glyma.17G003700' => 'gma', 'Glyma.17G019100' => 'gma', 'Gohir.A05G177100' => 'ghi', 'Gohir.A10G115700' => 'ghi', 'Gohir.D05G180500' => 'ghi', 'Gohir.D10G150800' => 'ghi', 'Gorai.009G185500' => 'gra', 'Gorai.011G168000' => 'gra', 'GSVIVG01007067001' => 'vvi', 'GSVIVG01017869001' => 'vvi', 'HanXRQChr10g0310201' => 'han', 'HanXRQChr12g0359451' => 'han', 'HanXRQChr15g0470191' => 'han', 'Haze_00985' => 'cav', 'Haze_07062' => 'cav', 'Haze_07063' => 'cav', 'Hma1.2p1_0394F.1_g143410' => 'hma', 'Hma1.2p1_0511F.1_g169150' => 'hma', 'HPP92_012061' => 'vpl', 'HPP92_012078' => 'vpl', 'HPP92_021919' => 'vpl', 'HPP92_027044' => 'vpl', 'Hund12556' => 'sun', 'Lalb_Chr07g0177421' => 'lal', 'Lalb_Chr13g0304411' => 'lal', 'Lalb_Chr15g0088461' => 'lal', 'Lalb_Chr18g0057571' => 'lal', 'Lalb_Chr20g0118331' => 'lal', 'Lj2C254G8' => 'lonja', 'Lj4g0014611' => 'lja', 'Lj4g0028246' => 'lja', 'Lj6C664T14' => 'lonja', 'Lj6g0027253' => 'lja', 'Lj6g0027793' => 'lja', 'Lsat_1_v5_gn_5_78420' => 'lsa', 'Lsat_1_v5_gn_8_110041' => 'lsa', 'Manes.03G186500' => 'mes', 'Manes.08G014800' => 'mes', 'Manes.15G021600' => 'mes', 'Mapoly0016s0015' => 'mpo', 'MBI14_g12728_MAGBIO' => 'mbi', 'MBI15_g26854_MAGBIO' => 'mbi', 'MBI17_g29605_MAGBIO' => 'mbi', 'MCO09G851' => 'mco', 'MD05G1364500' => 'mdo', 'MD10G1342200' => 'mdo', 'MD10G1342300' => 'mdo', 'MD13G1180700' => 'mdo', 'MD16G1181400' => 'mdo', 'Medtr2g021260' => 'mtr', 'Medtr2g027870' => 'mtr', 'Medtr4g117570' => 'mtr', 'Medtr4g134350' => 'mtr', 'MELO3C007987.2' => 'cme', 'MELO3C021392.2' => 'cme', 'Migut.M01480' => 'egut', 'Migut.N00141' => 'egut', 'MSTRG.16076' => 'ama', 'MSTRG.21828' => 'ama', 'MSTRG.24761' => 'ama', 'MSTRG.7106' => 'ama', 'Nitab4.5_0000147g0120' => 'nta', 'Nitab4.5_0001663g0220' => 'nta', 'Nitab4.5_0006569g0040' => 'nta', 'Nn1g02133' => 'nnu', 'Nn1g07647' => 'nnu', 'Nn4g26155' => 'nnu', 'Oeu016930.1' => 'oeu', 'Oeu017918.1' => 'oeu', 'Oeu023654.1' => 'oeu', 'Oeu037670.3' => 'oeu', 'Os02g0197900' => 'osa', 'Os03g0359000' => 'osa', 'Os06g0609700' => 'osa', 'Peaxi162Scf00095g00087' => 'pax', 'Peaxi162Scf00563g00526' => 'pax', 'PGR004G1581' => 'pgr', 'PGR031G2583' => 'pgr', 'PGR042G0848' => 'pgr', 'PGSC0003DMG400004348' => 'stu', 'PGSC0003DMG400027260' => 'stu', 'Phvul.003G089300' => 'pvu', 'Phvul.003G096200' => 'pvu', 'Phvul.006G134600' => 'pvu', 'Phvul.006G155700' => 'pvu', 'Potri.006G000700' => 'ptr', 'Potri.008G200400' => 'ptr', 'Potri.010G029200' => 'ptr', 'Potri.016G001000' => 'ptr', 'Pp3c12_23220' => 'ppa', 'Pp3c4_3670' => 'ppa', 'PRCOL_00003839' => 'pco', 'Prupe.1G148800' => 'ppe', 'Prupe.4G000500' => 'ppe', 'Psat0s2550g0040' => 'psa', 'Psat1g148640' => 'psa', 'Psat1g171320' => 'psa', 'Psat1g184880' => 'psa', 'Psat4g030600' => 'psa', 'Psat5g259880' => 'psa', 'PSO170G6742' => 'pso', 'PSO407G0235' => 'pso', 'PSO541G0268' => 'pso', 'PSO675G8732' => 'pso', 'QL05p066200' => 'qlo', 'QL06p005887' => 'qlo', 'RcHm_v2.0_Chr4g0419001' => 'rch', 'RcHm_v2.0_Chr5g0000061' => 'rch', 'Rhsim02G0087600' => 'rsi', 'Sabra06G0000900' => 'sbr', 'Sabra10G0011900' => 'sbr', 'Sabra16G0007700' => 'sbr', 'SalBow8G3928' => 'sbo', 'Sc19g0004670' => 'sci', 'Sc24g0000030' => 'sci', 'Sc24g0000500' => 'sci', 'Sed0007994' => 'sed', 'Sed0008129' => 'sed', 'SEGI_01934' => 'sgi', 'SEGI_03497' => 'sgi', 'SEGI_23486' => 'sgi', 'SGA_v2.0_scaffold107G30773' => 'sas', 'SGA_v2.0_scaffold166G38387' => 'sas', 'SGA_v2.0_scaffold7G03652' => 'sas', 'SMO118G0161' => 'smo', 'Solyc01g080270.3' => 'sly', 'Solyc04g015300.3' => 'sly', 'Sopen01g032060' => 'spe', 'Sopen04g007380' => 'spe', 'Sp3g21200' => 'spa', 'Sp7g12300' => 'spa', 'Sp7g17040' => 'spa', 'TAR362G0597' => 'tar', 'TAR624G1228' => 'tar', 'TAR626G0216' => 'tar', 'TAR626G1613' => 'tar', 'TAR636G1144' => 'tar', 'THA.LOC104806750' => 'tha', 'THA.LOC104808656' => 'tha', 'Thecc.04G219300' => 'tca', 'Thecc.06G244600' => 'tca', 'Thhalv10020399m.g' => 'esa', 'Thhalv10024836m.g' => 'esa', 'Thhalv10027147m.g' => 'esa', 'TPR.G10484' => 'tpr', 'TPR.G20137' => 'tpr', 'TPR.G28917' => 'tpr', 'TPR.G5952' => 'tpr', 'TWI53G0188' => 'twi', 'TWI63G0140' => 'twi', 'TWI73G1105' => 'twi', 'unitig_32.g10791' => 'ugi', 'unitig_32.g11407' => 'ugi', 'unitig_748.g7615' => 'ugi', 'unitig_748.g8354' => 'ugi', 'vmacro08253' => 'vma', 'vmacro15707' => 'vma', 'VMungo0540G1913' => 'vmu', 'VMungo0540G1948' => 'vmu', 'VMungo0647G0037' => 'vmu', 'VMungo1215G0347' => 'vmu', 'VMungo1215G0371' => 'vmu', 'Zm00001eb017460' => 'zma', 'Zm00001eb236070' => 'zma', 'Zm00001eb276160' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002163' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002163' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002163' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002163' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002163', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '310', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p31530' => 'bna', 'A04p07830' => 'bna', 'A07p08850' => 'bna', 'A08p12910' => 'bna', 'A08p24320' => 'bna', 'Aa31LG8G9990' => 'aar', 'Aa31LG9G3080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.916' => 'aag', 'Actinidia23464' => 'ach', 'Actinidia26624' => 'ach', 'Actinidia40201' => 'ach', 'Ah.14g087330' => 'amhyb', 'AL3G28580' => 'aly', 'AL3G38200' => 'aly', 'AL7G37580' => 'aly', 'AL7G42000' => 'aly', 'Aqoxy2G03228' => 'aox', 'Aqoxy4G02257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6H6MU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I5575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6FGN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGPF18' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG4QKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNA207' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT40GI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NP1GNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD899G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q67FBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2BILM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0GQ55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVK5KU' => 'arhy', 'AT3G23540' => 'ath', 'AT4G14290' => 'ath', 'AT4G17150' => 'ath', 'ATR0626G027' => 'atr', 'ATR0751G113' => 'atr', 'Atru.chr1.2207' => 'acertr', 'Atru.chr1.2226' => 'acertr', 'Atru.chr4.2667' => 'acertr', 'Atru.chr4.2668' => 'acertr', 'AUR62015194' => 'cqu', 'AUR62021798' => 'cqu', 'AUR62022512' => 'cqu', 'AUR62038384' => 'cqu', 'BcaB02g08621' => 'bca', 'BcaB04g18400' => 'bca', 'BcaB04g20445' => 'bca', 'BcaB06g26503' => 'bca', 'BcaB06g26504' => 'bca', 'BcaC02g09336' => 'bca', 'BcaC06g35538' => 'bca', 'BcaC07g38053' => 'bca', 'BolC1t03984H' => 'bol', 'BolC3t19944H' => 'bol', 'BolC4t25728H' => 'bol', 'BolC7t41866H' => 'bol', 'BolC8t48438H' => 'bol', 'BraA01t03283Z' => 'bra', 'BraA04t16471Z' => 'bra', 'BraA07t28676Z' => 'bra', 'BraA08t33274Z' => 'bra', 'BraA08t34387Z' => 'bra', 'C01p40230' => 'bna', 'C03p76890' => 'bna', 'C04p41460' => 'bna', 'C07p13710' => 'bna', 'CAN.G1456.14' => 'can', 'CAN.G522.7' => 'can', 'CANSAT78G1916' => 'cansat', 'CARHR099440' => 'chi', 'CARHR220470' => 'chi', 'CARHR223720' => 'chi', 'Carub.0003s2374' => 'cru', 'Carub.0007s2426' => 'cru', 'Carub.0007s2802' => 'cru', 'Ca_00609_v3' => 'car', 'Ca_13512_v3' => 'car', 'Ca_13516_v3' => 'car', 'Ca_21577_v3' => 'car', 'Ca_24686_v3' => 'car', 'Ca_28266_v3' => 'car', 'Ca_29751_v3' => 'car', 'CBR_g17709' => 'cbr', 'Cc03_g02950' => 'ccan', 'Cc09_g00070' => 'ccan', 'CDE02G3163' => 'cde', 'CDE05G0361' => 'cde', 'CDE05G2023' => 'cde', 'CDE05G3653' => 'cde', 'CDE11G0556' => 'cde', 'Cfa015556' => 'cfa', 'Cfa021531' => 'cfa', 'Ciclev10004606m.g' => 'ccl', 'Ciclev10015057m.g' => 'ccl', 'CiPaw.01G158100' => 'cil', 'CiPaw.02G090500' => 'cil', 'CiPaw.09G113100' => 'cil', 'CiPaw.10G085000' => 'cil', 'ClCG01G021010' => 'cla', 'ClCG06G005700' => 'cla', 'COL.COLO4_21623' => 'col', 'COL.COLO4_21624' => 'col', 'COL.COLO4_31968' => 'col', 'Cpa.g.sc16.49' => 'cpa', 'Cpa.g.sc27.184' => 'cpa', 'Cre07.g328950' => 'cre', 'CsaV3_6G005450' => 'csa', 'CsaV3_6G048000' => 'csa', 'CSS0003902' => 'camsi', 'CSS0016196' => 'camsi', 'CSS0021898' => 'camsi', 'CSS0027112' => 'camsi', 'CSS0044954' => 'camsi', 'CSS0044955' => 'camsi', 'DCAR_000334' => 'dca', 'DCAR_002423' => 'dca', 'DCAR_005489' => 'dca', 'Dinv04378' => 'din', 'Dinv14850' => 'din', 'Dinv16916' => 'din', 'Dinv44468' => 'din', 'Duzib151G1139' => 'dzi', 'Duzib192G1072' => 'dzi', 'Duzib212G0564' => 'dzi', 'ECA150G0003' => 'eca', 'ECA234G3826' => 'eca', 'EL10Ac8g20281' => 'bvu', 'EL10As19g24188' => 'bvu', 'Eucgr.B01162' => 'egr', 'Eucgr.E04233' => 'egr', 'FAN07G2289' => 'fan', 'FAN12G2278' => 'fan', 'FAN21G3334' => 'fan', 'FAN22G0102' => 'fan', 'FAN25G3252' => 'fan', 'FvH4_3g00060' => 'fve', 'FvH4_4g14200' => 'fve', 'Glyma.02G139950' => 'gma', 'Glyma.04G137300' => 'gma', 'Glyma.07G255200' => 'gma', 'Glyma.07G270200' => 'gma', 'Glyma.09G017500' => 'gma', 'Glyma.13G210700' => 'gma', 'Glyma.15G102100' => 'gma', 'Glyma.15G123200' => 'gma', 'Glyma.17G003700' => 'gma', 'Glyma.17G019100' => 'gma', 'Gohir.A05G177100' => 'ghi', 'Gohir.A10G115700' => 'ghi', 'Gohir.D05G180500' => 'ghi', 'Gohir.D10G150800' => 'ghi', 'Gorai.009G185500' => 'gra', 'Gorai.011G168000' => 'gra', 'GSVIVG01007067001' => 'vvi', 'GSVIVG01017869001' => 'vvi', 'HanXRQChr10g0310201' => 'han', 'HanXRQChr12g0359451' => 'han', 'HanXRQChr15g0470191' => 'han', 'Haze_00985' => 'cav', 'Haze_07062' => 'cav', 'Haze_07063' => 'cav', 'Hma1.2p1_0394F.1_g143410' => 'hma', 'Hma1.2p1_0511F.1_g169150' => 'hma', 'HPP92_012061' => 'vpl', 'HPP92_012078' => 'vpl', 'HPP92_021919' => 'vpl', 'HPP92_027044' => 'vpl', 'Hund12556' => 'sun', 'Lalb_Chr07g0177421' => 'lal', 'Lalb_Chr13g0304411' => 'lal', 'Lalb_Chr15g0088461' => 'lal', 'Lalb_Chr18g0057571' => 'lal', 'Lalb_Chr20g0118331' => 'lal', 'Lj2C254G8' => 'lonja', 'Lj4g0014611' => 'lja', 'Lj4g0028246' => 'lja', 'Lj6C664T14' => 'lonja', 'Lj6g0027253' => 'lja', 'Lj6g0027793' => 'lja', 'Lsat_1_v5_gn_5_78420' => 'lsa', 'Lsat_1_v5_gn_8_110041' => 'lsa', 'Manes.03G186500' => 'mes', 'Manes.08G014800' => 'mes', 'Manes.15G021600' => 'mes', 'Mapoly0016s0015' => 'mpo', 'MBI14_g12728_MAGBIO' => 'mbi', 'MBI15_g26854_MAGBIO' => 'mbi', 'MBI17_g29605_MAGBIO' => 'mbi', 'MCO09G851' => 'mco', 'MD05G1364500' => 'mdo', 'MD10G1342200' => 'mdo', 'MD10G1342300' => 'mdo', 'MD13G1180700' => 'mdo', 'MD16G1181400' => 'mdo', 'Medtr2g021260' => 'mtr', 'Medtr2g027870' => 'mtr', 'Medtr4g117570' => 'mtr', 'Medtr4g134350' => 'mtr', 'MELO3C007987.2' => 'cme', 'MELO3C021392.2' => 'cme', 'Migut.M01480' => 'egut', 'Migut.N00141' => 'egut', 'MSTRG.16076' => 'ama', 'MSTRG.21828' => 'ama', 'MSTRG.24761' => 'ama', 'MSTRG.7106' => 'ama', 'Nitab4.5_0000147g0120' => 'nta', 'Nitab4.5_0001663g0220' => 'nta', 'Nitab4.5_0006569g0040' => 'nta', 'Nn1g02133' => 'nnu', 'Nn1g07647' => 'nnu', 'Nn4g26155' => 'nnu', 'Oeu016930.1' => 'oeu', 'Oeu017918.1' => 'oeu', 'Oeu023654.1' => 'oeu', 'Oeu037670.3' => 'oeu', 'Os02g0197900' => 'osa', 'Os03g0359000' => 'osa', 'Os06g0609700' => 'osa', 'Peaxi162Scf00095g00087' => 'pax', 'Peaxi162Scf00563g00526' => 'pax', 'PGR004G1581' => 'pgr', 'PGR031G2583' => 'pgr', 'PGR042G0848' => 'pgr', 'PGSC0003DMG400004348' => 'stu', 'PGSC0003DMG400027260' => 'stu', 'Phvul.003G089300' => 'pvu', 'Phvul.003G096200' => 'pvu', 'Phvul.006G134600' => 'pvu', 'Phvul.006G155700' => 'pvu', 'Potri.006G000700' => 'ptr', 'Potri.008G200400' => 'ptr', 'Potri.010G029200' => 'ptr', 'Potri.016G001000' => 'ptr', 'Pp3c12_23220' => 'ppa', 'Pp3c4_3670' => 'ppa', 'PRCOL_00003839' => 'pco', 'Prupe.1G148800' => 'ppe', 'Prupe.4G000500' => 'ppe', 'Psat0s2550g0040' => 'psa', 'Psat1g148640' => 'psa', 'Psat1g171320' => 'psa', 'Psat1g184880' => 'psa', 'Psat4g030600' => 'psa', 'Psat5g259880' => 'psa', 'PSO170G6742' => 'pso', 'PSO407G0235' => 'pso', 'PSO541G0268' => 'pso', 'PSO675G8732' => 'pso', 'QL05p066200' => 'qlo', 'QL06p005887' => 'qlo', 'RcHm_v2.0_Chr4g0419001' => 'rch', 'RcHm_v2.0_Chr5g0000061' => 'rch', 'Rhsim02G0087600' => 'rsi', 'Sabra06G0000900' => 'sbr', 'Sabra10G0011900' => 'sbr', 'Sabra16G0007700' => 'sbr', 'SalBow8G3928' => 'sbo', 'Sc19g0004670' => 'sci', 'Sc24g0000030' => 'sci', 'Sc24g0000500' => 'sci', 'Sed0007994' => 'sed', 'Sed0008129' => 'sed', 'SEGI_01934' => 'sgi', 'SEGI_03497' => 'sgi', 'SEGI_23486' => 'sgi', 'SGA_v2.0_scaffold107G30773' => 'sas', 'SGA_v2.0_scaffold166G38387' => 'sas', 'SGA_v2.0_scaffold7G03652' => 'sas', 'SMO118G0161' => 'smo', 'Solyc01g080270.3' => 'sly', 'Solyc04g015300.3' => 'sly', 'Sopen01g032060' => 'spe', 'Sopen04g007380' => 'spe', 'Sp3g21200' => 'spa', 'Sp7g12300' => 'spa', 'Sp7g17040' => 'spa', 'TAR362G0597' => 'tar', 'TAR624G1228' => 'tar', 'TAR626G0216' => 'tar', 'TAR626G1613' => 'tar', 'TAR636G1144' => 'tar', 'THA.LOC104806750' => 'tha', 'THA.LOC104808656' => 'tha', 'Thecc.04G219300' => 'tca', 'Thecc.06G244600' => 'tca', 'Thhalv10020399m.g' => 'esa', 'Thhalv10024836m.g' => 'esa', 'Thhalv10027147m.g' => 'esa', 'TPR.G10484' => 'tpr', 'TPR.G20137' => 'tpr', 'TPR.G28917' => 'tpr', 'TPR.G5952' => 'tpr', 'TWI53G0188' => 'twi', 'TWI63G0140' => 'twi', 'TWI73G1105' => 'twi', 'unitig_32.g10791' => 'ugi', 'unitig_32.g11407' => 'ugi', 'unitig_748.g7615' => 'ugi', 'unitig_748.g8354' => 'ugi', 'vmacro08253' => 'vma', 'vmacro15707' => 'vma', 'VMungo0540G1913' => 'vmu', 'VMungo0540G1948' => 'vmu', 'VMungo0647G0037' => 'vmu', 'VMungo1215G0347' => 'vmu', 'VMungo1215G0371' => 'vmu', 'Zm00001eb017460' => 'zma', 'Zm00001eb236070' => 'zma', 'Zm00001eb276160' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002163', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002163' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002163', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '310', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002163' ) ), 'genes' => array( 'A01p31530' => 'bna', 'A04p07830' => 'bna', 'A07p08850' => 'bna', 'A08p12910' => 'bna', 'A08p24320' => 'bna', 'Aa31LG8G9990' => 'aar', 'Aa31LG9G3080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.916' => 'aag', 'Actinidia23464' => 'ach', 'Actinidia26624' => 'ach', 'Actinidia40201' => 'ach', 'Ah.14g087330' => 'amhyb', 'AL3G28580' => 'aly', 'AL3G38200' => 'aly', 'AL7G37580' => 'aly', 'AL7G42000' => 'aly', 'Aqoxy2G03228' => 'aox', 'Aqoxy4G02257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6H6MU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I5575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6FGN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGPF18' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG4QKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNA207' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT40GI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NP1GNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD899G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q67FBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2BILM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0GQ55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVK5KU' => 'arhy', 'AT3G23540' => 'ath', 'AT4G14290' => 'ath', 'AT4G17150' => 'ath', 'ATR0626G027' => 'atr', 'ATR0751G113' => 'atr', 'Atru.chr1.2207' => 'acertr', 'Atru.chr1.2226' => 'acertr', 'Atru.chr4.2667' => 'acertr', 'Atru.chr4.2668' => 'acertr', 'AUR62015194' => 'cqu', 'AUR62021798' => 'cqu', 'AUR62022512' => 'cqu', 'AUR62038384' => 'cqu', 'BcaB02g08621' => 'bca', 'BcaB04g18400' => 'bca', 'BcaB04g20445' => 'bca', 'BcaB06g26503' => 'bca', 'BcaB06g26504' => 'bca', 'BcaC02g09336' => 'bca', 'BcaC06g35538' => 'bca', 'BcaC07g38053' => 'bca', 'BolC1t03984H' => 'bol', 'BolC3t19944H' => 'bol', 'BolC4t25728H' => 'bol', 'BolC7t41866H' => 'bol', 'BolC8t48438H' => 'bol', 'BraA01t03283Z' => 'bra', 'BraA04t16471Z' => 'bra', 'BraA07t28676Z' => 'bra', 'BraA08t33274Z' => 'bra', 'BraA08t34387Z' => 'bra', 'C01p40230' => 'bna', 'C03p76890' => 'bna', 'C04p41460' => 'bna', 'C07p13710' => 'bna', 'CAN.G1456.14' => 'can', 'CAN.G522.7' => 'can', 'CANSAT78G1916' => 'cansat', 'CARHR099440' => 'chi', 'CARHR220470' => 'chi', 'CARHR223720' => 'chi', 'Carub.0003s2374' => 'cru', 'Carub.0007s2426' => 'cru', 'Carub.0007s2802' => 'cru', 'Ca_00609_v3' => 'car', 'Ca_13512_v3' => 'car', 'Ca_13516_v3' => 'car', 'Ca_21577_v3' => 'car', 'Ca_24686_v3' => 'car', 'Ca_28266_v3' => 'car', 'Ca_29751_v3' => 'car', 'CBR_g17709' => 'cbr', 'Cc03_g02950' => 'ccan', 'Cc09_g00070' => 'ccan', 'CDE02G3163' => 'cde', 'CDE05G0361' => 'cde', 'CDE05G2023' => 'cde', 'CDE05G3653' => 'cde', 'CDE11G0556' => 'cde', 'Cfa015556' => 'cfa', 'Cfa021531' => 'cfa', 'Ciclev10004606m.g' => 'ccl', 'Ciclev10015057m.g' => 'ccl', 'CiPaw.01G158100' => 'cil', 'CiPaw.02G090500' => 'cil', 'CiPaw.09G113100' => 'cil', 'CiPaw.10G085000' => 'cil', 'ClCG01G021010' => 'cla', 'ClCG06G005700' => 'cla', 'COL.COLO4_21623' => 'col', 'COL.COLO4_21624' => 'col', 'COL.COLO4_31968' => 'col', 'Cpa.g.sc16.49' => 'cpa', 'Cpa.g.sc27.184' => 'cpa', 'Cre07.g328950' => 'cre', 'CsaV3_6G005450' => 'csa', 'CsaV3_6G048000' => 'csa', 'CSS0003902' => 'camsi', 'CSS0016196' => 'camsi', 'CSS0021898' => 'camsi', 'CSS0027112' => 'camsi', 'CSS0044954' => 'camsi', 'CSS0044955' => 'camsi', 'DCAR_000334' => 'dca', 'DCAR_002423' => 'dca', 'DCAR_005489' => 'dca', 'Dinv04378' => 'din', 'Dinv14850' => 'din', 'Dinv16916' => 'din', 'Dinv44468' => 'din', 'Duzib151G1139' => 'dzi', 'Duzib192G1072' => 'dzi', 'Duzib212G0564' => 'dzi', 'ECA150G0003' => 'eca', 'ECA234G3826' => 'eca', 'EL10Ac8g20281' => 'bvu', 'EL10As19g24188' => 'bvu', 'Eucgr.B01162' => 'egr', 'Eucgr.E04233' => 'egr', 'FAN07G2289' => 'fan', 'FAN12G2278' => 'fan', 'FAN21G3334' => 'fan', 'FAN22G0102' => 'fan', 'FAN25G3252' => 'fan', 'FvH4_3g00060' => 'fve', 'FvH4_4g14200' => 'fve', 'Glyma.02G139950' => 'gma', 'Glyma.04G137300' => 'gma', 'Glyma.07G255200' => 'gma', 'Glyma.07G270200' => 'gma', 'Glyma.09G017500' => 'gma', 'Glyma.13G210700' => 'gma', 'Glyma.15G102100' => 'gma', 'Glyma.15G123200' => 'gma', 'Glyma.17G003700' => 'gma', 'Glyma.17G019100' => 'gma', 'Gohir.A05G177100' => 'ghi', 'Gohir.A10G115700' => 'ghi', 'Gohir.D05G180500' => 'ghi', 'Gohir.D10G150800' => 'ghi', 'Gorai.009G185500' => 'gra', 'Gorai.011G168000' => 'gra', 'GSVIVG01007067001' => 'vvi', 'GSVIVG01017869001' => 'vvi', 'HanXRQChr10g0310201' => 'han', 'HanXRQChr12g0359451' => 'han', 'HanXRQChr15g0470191' => 'han', 'Haze_00985' => 'cav', 'Haze_07062' => 'cav', 'Haze_07063' => 'cav', 'Hma1.2p1_0394F.1_g143410' => 'hma', 'Hma1.2p1_0511F.1_g169150' => 'hma', 'HPP92_012061' => 'vpl', 'HPP92_012078' => 'vpl', 'HPP92_021919' => 'vpl', 'HPP92_027044' => 'vpl', 'Hund12556' => 'sun', 'Lalb_Chr07g0177421' => 'lal', 'Lalb_Chr13g0304411' => 'lal', 'Lalb_Chr15g0088461' => 'lal', 'Lalb_Chr18g0057571' => 'lal', 'Lalb_Chr20g0118331' => 'lal', 'Lj2C254G8' => 'lonja', 'Lj4g0014611' => 'lja', 'Lj4g0028246' => 'lja', 'Lj6C664T14' => 'lonja', 'Lj6g0027253' => 'lja', 'Lj6g0027793' => 'lja', 'Lsat_1_v5_gn_5_78420' => 'lsa', 'Lsat_1_v5_gn_8_110041' => 'lsa', 'Manes.03G186500' => 'mes', 'Manes.08G014800' => 'mes', 'Manes.15G021600' => 'mes', 'Mapoly0016s0015' => 'mpo', 'MBI14_g12728_MAGBIO' => 'mbi', 'MBI15_g26854_MAGBIO' => 'mbi', 'MBI17_g29605_MAGBIO' => 'mbi', 'MCO09G851' => 'mco', 'MD05G1364500' => 'mdo', 'MD10G1342200' => 'mdo', 'MD10G1342300' => 'mdo', 'MD13G1180700' => 'mdo', 'MD16G1181400' => 'mdo', 'Medtr2g021260' => 'mtr', 'Medtr2g027870' => 'mtr', 'Medtr4g117570' => 'mtr', 'Medtr4g134350' => 'mtr', 'MELO3C007987.2' => 'cme', 'MELO3C021392.2' => 'cme', 'Migut.M01480' => 'egut', 'Migut.N00141' => 'egut', 'MSTRG.16076' => 'ama', 'MSTRG.21828' => 'ama', 'MSTRG.24761' => 'ama', 'MSTRG.7106' => 'ama', 'Nitab4.5_0000147g0120' => 'nta', 'Nitab4.5_0001663g0220' => 'nta', 'Nitab4.5_0006569g0040' => 'nta', 'Nn1g02133' => 'nnu', 'Nn1g07647' => 'nnu', 'Nn4g26155' => 'nnu', 'Oeu016930.1' => 'oeu', 'Oeu017918.1' => 'oeu', 'Oeu023654.1' => 'oeu', 'Oeu037670.3' => 'oeu', 'Os02g0197900' => 'osa', 'Os03g0359000' => 'osa', 'Os06g0609700' => 'osa', 'Peaxi162Scf00095g00087' => 'pax', 'Peaxi162Scf00563g00526' => 'pax', 'PGR004G1581' => 'pgr', 'PGR031G2583' => 'pgr', 'PGR042G0848' => 'pgr', 'PGSC0003DMG400004348' => 'stu', 'PGSC0003DMG400027260' => 'stu', 'Phvul.003G089300' => 'pvu', 'Phvul.003G096200' => 'pvu', 'Phvul.006G134600' => 'pvu', 'Phvul.006G155700' => 'pvu', 'Potri.006G000700' => 'ptr', 'Potri.008G200400' => 'ptr', 'Potri.010G029200' => 'ptr', 'Potri.016G001000' => 'ptr', 'Pp3c12_23220' => 'ppa', 'Pp3c4_3670' => 'ppa', 'PRCOL_00003839' => 'pco', 'Prupe.1G148800' => 'ppe', 'Prupe.4G000500' => 'ppe', 'Psat0s2550g0040' => 'psa', 'Psat1g148640' => 'psa', 'Psat1g171320' => 'psa', 'Psat1g184880' => 'psa', 'Psat4g030600' => 'psa', 'Psat5g259880' => 'psa', 'PSO170G6742' => 'pso', 'PSO407G0235' => 'pso', 'PSO541G0268' => 'pso', 'PSO675G8732' => 'pso', 'QL05p066200' => 'qlo', 'QL06p005887' => 'qlo', 'RcHm_v2.0_Chr4g0419001' => 'rch', 'RcHm_v2.0_Chr5g0000061' => 'rch', 'Rhsim02G0087600' => 'rsi', 'Sabra06G0000900' => 'sbr', 'Sabra10G0011900' => 'sbr', 'Sabra16G0007700' => 'sbr', 'SalBow8G3928' => 'sbo', 'Sc19g0004670' => 'sci', 'Sc24g0000030' => 'sci', 'Sc24g0000500' => 'sci', 'Sed0007994' => 'sed', 'Sed0008129' => 'sed', 'SEGI_01934' => 'sgi', 'SEGI_03497' => 'sgi', 'SEGI_23486' => 'sgi', 'SGA_v2.0_scaffold107G30773' => 'sas', 'SGA_v2.0_scaffold166G38387' => 'sas', 'SGA_v2.0_scaffold7G03652' => 'sas', 'SMO118G0161' => 'smo', 'Solyc01g080270.3' => 'sly', 'Solyc04g015300.3' => 'sly', 'Sopen01g032060' => 'spe', 'Sopen04g007380' => 'spe', 'Sp3g21200' => 'spa', 'Sp7g12300' => 'spa', 'Sp7g17040' => 'spa', 'TAR362G0597' => 'tar', 'TAR624G1228' => 'tar', 'TAR626G0216' => 'tar', 'TAR626G1613' => 'tar', 'TAR636G1144' => 'tar', 'THA.LOC104806750' => 'tha', 'THA.LOC104808656' => 'tha', 'Thecc.04G219300' => 'tca', 'Thecc.06G244600' => 'tca', 'Thhalv10020399m.g' => 'esa', 'Thhalv10024836m.g' => 'esa', 'Thhalv10027147m.g' => 'esa', 'TPR.G10484' => 'tpr', 'TPR.G20137' => 'tpr', 'TPR.G28917' => 'tpr', 'TPR.G5952' => 'tpr', 'TWI53G0188' => 'twi', 'TWI63G0140' => 'twi', 'TWI73G1105' => 'twi', 'unitig_32.g10791' => 'ugi', 'unitig_32.g11407' => 'ugi', 'unitig_748.g7615' => 'ugi', 'unitig_748.g8354' => 'ugi', 'vmacro08253' => 'vma', 'vmacro15707' => 'vma', 'VMungo0540G1913' => 'vmu', 'VMungo0540G1948' => 'vmu', 'VMungo0647G0037' => 'vmu', 'VMungo1215G0347' => 'vmu', 'VMungo1215G0371' => 'vmu', 'Zm00001eb017460' => 'zma', 'Zm00001eb236070' => 'zma', 'Zm00001eb276160' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002163' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002163' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002163' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002163' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002163', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '310', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p31530' => 'bna', 'A04p07830' => 'bna', 'A07p08850' => 'bna', 'A08p12910' => 'bna', 'A08p24320' => 'bna', 'Aa31LG8G9990' => 'aar', 'Aa31LG9G3080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.916' => 'aag', 'Actinidia23464' => 'ach', 'Actinidia26624' => 'ach', 'Actinidia40201' => 'ach', 'Ah.14g087330' => 'amhyb', 'AL3G28580' => 'aly', 'AL3G38200' => 'aly', 'AL7G37580' => 'aly', 'AL7G42000' => 'aly', 'Aqoxy2G03228' => 'aox', 'Aqoxy4G02257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6H6MU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I5575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6FGN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGPF18' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG4QKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNA207' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT40GI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NP1GNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD899G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q67FBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2BILM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0GQ55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVK5KU' => 'arhy', 'AT3G23540' => 'ath', 'AT4G14290' => 'ath', 'AT4G17150' => 'ath', 'ATR0626G027' => 'atr', 'ATR0751G113' => 'atr', 'Atru.chr1.2207' => 'acertr', 'Atru.chr1.2226' => 'acertr', 'Atru.chr4.2667' => 'acertr', 'Atru.chr4.2668' => 'acertr', 'AUR62015194' => 'cqu', 'AUR62021798' => 'cqu', 'AUR62022512' => 'cqu', 'AUR62038384' => 'cqu', 'BcaB02g08621' => 'bca', 'BcaB04g18400' => 'bca', 'BcaB04g20445' => 'bca', 'BcaB06g26503' => 'bca', 'BcaB06g26504' => 'bca', 'BcaC02g09336' => 'bca', 'BcaC06g35538' => 'bca', 'BcaC07g38053' => 'bca', 'BolC1t03984H' => 'bol', 'BolC3t19944H' => 'bol', 'BolC4t25728H' => 'bol', 'BolC7t41866H' => 'bol', 'BolC8t48438H' => 'bol', 'BraA01t03283Z' => 'bra', 'BraA04t16471Z' => 'bra', 'BraA07t28676Z' => 'bra', 'BraA08t33274Z' => 'bra', 'BraA08t34387Z' => 'bra', 'C01p40230' => 'bna', 'C03p76890' => 'bna', 'C04p41460' => 'bna', 'C07p13710' => 'bna', 'CAN.G1456.14' => 'can', 'CAN.G522.7' => 'can', 'CANSAT78G1916' => 'cansat', 'CARHR099440' => 'chi', 'CARHR220470' => 'chi', 'CARHR223720' => 'chi', 'Carub.0003s2374' => 'cru', 'Carub.0007s2426' => 'cru', 'Carub.0007s2802' => 'cru', 'Ca_00609_v3' => 'car', 'Ca_13512_v3' => 'car', 'Ca_13516_v3' => 'car', 'Ca_21577_v3' => 'car', 'Ca_24686_v3' => 'car', 'Ca_28266_v3' => 'car', 'Ca_29751_v3' => 'car', 'CBR_g17709' => 'cbr', 'Cc03_g02950' => 'ccan', 'Cc09_g00070' => 'ccan', 'CDE02G3163' => 'cde', 'CDE05G0361' => 'cde', 'CDE05G2023' => 'cde', 'CDE05G3653' => 'cde', 'CDE11G0556' => 'cde', 'Cfa015556' => 'cfa', 'Cfa021531' => 'cfa', 'Ciclev10004606m.g' => 'ccl', 'Ciclev10015057m.g' => 'ccl', 'CiPaw.01G158100' => 'cil', 'CiPaw.02G090500' => 'cil', 'CiPaw.09G113100' => 'cil', 'CiPaw.10G085000' => 'cil', 'ClCG01G021010' => 'cla', 'ClCG06G005700' => 'cla', 'COL.COLO4_21623' => 'col', 'COL.COLO4_21624' => 'col', 'COL.COLO4_31968' => 'col', 'Cpa.g.sc16.49' => 'cpa', 'Cpa.g.sc27.184' => 'cpa', 'Cre07.g328950' => 'cre', 'CsaV3_6G005450' => 'csa', 'CsaV3_6G048000' => 'csa', 'CSS0003902' => 'camsi', 'CSS0016196' => 'camsi', 'CSS0021898' => 'camsi', 'CSS0027112' => 'camsi', 'CSS0044954' => 'camsi', 'CSS0044955' => 'camsi', 'DCAR_000334' => 'dca', 'DCAR_002423' => 'dca', 'DCAR_005489' => 'dca', 'Dinv04378' => 'din', 'Dinv14850' => 'din', 'Dinv16916' => 'din', 'Dinv44468' => 'din', 'Duzib151G1139' => 'dzi', 'Duzib192G1072' => 'dzi', 'Duzib212G0564' => 'dzi', 'ECA150G0003' => 'eca', 'ECA234G3826' => 'eca', 'EL10Ac8g20281' => 'bvu', 'EL10As19g24188' => 'bvu', 'Eucgr.B01162' => 'egr', 'Eucgr.E04233' => 'egr', 'FAN07G2289' => 'fan', 'FAN12G2278' => 'fan', 'FAN21G3334' => 'fan', 'FAN22G0102' => 'fan', 'FAN25G3252' => 'fan', 'FvH4_3g00060' => 'fve', 'FvH4_4g14200' => 'fve', 'Glyma.02G139950' => 'gma', 'Glyma.04G137300' => 'gma', 'Glyma.07G255200' => 'gma', 'Glyma.07G270200' => 'gma', 'Glyma.09G017500' => 'gma', 'Glyma.13G210700' => 'gma', 'Glyma.15G102100' => 'gma', 'Glyma.15G123200' => 'gma', 'Glyma.17G003700' => 'gma', 'Glyma.17G019100' => 'gma', 'Gohir.A05G177100' => 'ghi', 'Gohir.A10G115700' => 'ghi', 'Gohir.D05G180500' => 'ghi', 'Gohir.D10G150800' => 'ghi', 'Gorai.009G185500' => 'gra', 'Gorai.011G168000' => 'gra', 'GSVIVG01007067001' => 'vvi', 'GSVIVG01017869001' => 'vvi', 'HanXRQChr10g0310201' => 'han', 'HanXRQChr12g0359451' => 'han', 'HanXRQChr15g0470191' => 'han', 'Haze_00985' => 'cav', 'Haze_07062' => 'cav', 'Haze_07063' => 'cav', 'Hma1.2p1_0394F.1_g143410' => 'hma', 'Hma1.2p1_0511F.1_g169150' => 'hma', 'HPP92_012061' => 'vpl', 'HPP92_012078' => 'vpl', 'HPP92_021919' => 'vpl', 'HPP92_027044' => 'vpl', 'Hund12556' => 'sun', 'Lalb_Chr07g0177421' => 'lal', 'Lalb_Chr13g0304411' => 'lal', 'Lalb_Chr15g0088461' => 'lal', 'Lalb_Chr18g0057571' => 'lal', 'Lalb_Chr20g0118331' => 'lal', 'Lj2C254G8' => 'lonja', 'Lj4g0014611' => 'lja', 'Lj4g0028246' => 'lja', 'Lj6C664T14' => 'lonja', 'Lj6g0027253' => 'lja', 'Lj6g0027793' => 'lja', 'Lsat_1_v5_gn_5_78420' => 'lsa', 'Lsat_1_v5_gn_8_110041' => 'lsa', 'Manes.03G186500' => 'mes', 'Manes.08G014800' => 'mes', 'Manes.15G021600' => 'mes', 'Mapoly0016s0015' => 'mpo', 'MBI14_g12728_MAGBIO' => 'mbi', 'MBI15_g26854_MAGBIO' => 'mbi', 'MBI17_g29605_MAGBIO' => 'mbi', 'MCO09G851' => 'mco', 'MD05G1364500' => 'mdo', 'MD10G1342200' => 'mdo', 'MD10G1342300' => 'mdo', 'MD13G1180700' => 'mdo', 'MD16G1181400' => 'mdo', 'Medtr2g021260' => 'mtr', 'Medtr2g027870' => 'mtr', 'Medtr4g117570' => 'mtr', 'Medtr4g134350' => 'mtr', 'MELO3C007987.2' => 'cme', 'MELO3C021392.2' => 'cme', 'Migut.M01480' => 'egut', 'Migut.N00141' => 'egut', 'MSTRG.16076' => 'ama', 'MSTRG.21828' => 'ama', 'MSTRG.24761' => 'ama', 'MSTRG.7106' => 'ama', 'Nitab4.5_0000147g0120' => 'nta', 'Nitab4.5_0001663g0220' => 'nta', 'Nitab4.5_0006569g0040' => 'nta', 'Nn1g02133' => 'nnu', 'Nn1g07647' => 'nnu', 'Nn4g26155' => 'nnu', 'Oeu016930.1' => 'oeu', 'Oeu017918.1' => 'oeu', 'Oeu023654.1' => 'oeu', 'Oeu037670.3' => 'oeu', 'Os02g0197900' => 'osa', 'Os03g0359000' => 'osa', 'Os06g0609700' => 'osa', 'Peaxi162Scf00095g00087' => 'pax', 'Peaxi162Scf00563g00526' => 'pax', 'PGR004G1581' => 'pgr', 'PGR031G2583' => 'pgr', 'PGR042G0848' => 'pgr', 'PGSC0003DMG400004348' => 'stu', 'PGSC0003DMG400027260' => 'stu', 'Phvul.003G089300' => 'pvu', 'Phvul.003G096200' => 'pvu', 'Phvul.006G134600' => 'pvu', 'Phvul.006G155700' => 'pvu', 'Potri.006G000700' => 'ptr', 'Potri.008G200400' => 'ptr', 'Potri.010G029200' => 'ptr', 'Potri.016G001000' => 'ptr', 'Pp3c12_23220' => 'ppa', 'Pp3c4_3670' => 'ppa', 'PRCOL_00003839' => 'pco', 'Prupe.1G148800' => 'ppe', 'Prupe.4G000500' => 'ppe', 'Psat0s2550g0040' => 'psa', 'Psat1g148640' => 'psa', 'Psat1g171320' => 'psa', 'Psat1g184880' => 'psa', 'Psat4g030600' => 'psa', 'Psat5g259880' => 'psa', 'PSO170G6742' => 'pso', 'PSO407G0235' => 'pso', 'PSO541G0268' => 'pso', 'PSO675G8732' => 'pso', 'QL05p066200' => 'qlo', 'QL06p005887' => 'qlo', 'RcHm_v2.0_Chr4g0419001' => 'rch', 'RcHm_v2.0_Chr5g0000061' => 'rch', 'Rhsim02G0087600' => 'rsi', 'Sabra06G0000900' => 'sbr', 'Sabra10G0011900' => 'sbr', 'Sabra16G0007700' => 'sbr', 'SalBow8G3928' => 'sbo', 'Sc19g0004670' => 'sci', 'Sc24g0000030' => 'sci', 'Sc24g0000500' => 'sci', 'Sed0007994' => 'sed', 'Sed0008129' => 'sed', 'SEGI_01934' => 'sgi', 'SEGI_03497' => 'sgi', 'SEGI_23486' => 'sgi', 'SGA_v2.0_scaffold107G30773' => 'sas', 'SGA_v2.0_scaffold166G38387' => 'sas', 'SGA_v2.0_scaffold7G03652' => 'sas', 'SMO118G0161' => 'smo', 'Solyc01g080270.3' => 'sly', 'Solyc04g015300.3' => 'sly', 'Sopen01g032060' => 'spe', 'Sopen04g007380' => 'spe', 'Sp3g21200' => 'spa', 'Sp7g12300' => 'spa', 'Sp7g17040' => 'spa', 'TAR362G0597' => 'tar', 'TAR624G1228' => 'tar', 'TAR626G0216' => 'tar', 'TAR626G1613' => 'tar', 'TAR636G1144' => 'tar', 'THA.LOC104806750' => 'tha', 'THA.LOC104808656' => 'tha', 'Thecc.04G219300' => 'tca', 'Thecc.06G244600' => 'tca', 'Thhalv10020399m.g' => 'esa', 'Thhalv10024836m.g' => 'esa', 'Thhalv10027147m.g' => 'esa', 'TPR.G10484' => 'tpr', 'TPR.G20137' => 'tpr', 'TPR.G28917' => 'tpr', 'TPR.G5952' => 'tpr', 'TWI53G0188' => 'twi', 'TWI63G0140' => 'twi', 'TWI73G1105' => 'twi', 'unitig_32.g10791' => 'ugi', 'unitig_32.g11407' => 'ugi', 'unitig_748.g7615' => 'ugi', 'unitig_748.g8354' => 'ugi', 'vmacro08253' => 'vma', 'vmacro15707' => 'vma', 'VMungo0540G1913' => 'vmu', 'VMungo0540G1948' => 'vmu', 'VMungo0647G0037' => 'vmu', 'VMungo1215G0347' => 'vmu', 'VMungo1215G0371' => 'vmu', 'Zm00001eb017460' => 'zma', 'Zm00001eb236070' => 'zma', 'Zm00001eb276160' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002163', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002163' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002163', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '310', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002163' ) ), 'genes' => array( 'A01p31530' => 'bna', 'A04p07830' => 'bna', 'A07p08850' => 'bna', 'A08p12910' => 'bna', 'A08p24320' => 'bna', 'Aa31LG8G9990' => 'aar', 'Aa31LG9G3080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.916' => 'aag', 'Actinidia23464' => 'ach', 'Actinidia26624' => 'ach', 'Actinidia40201' => 'ach', 'Ah.14g087330' => 'amhyb', 'AL3G28580' => 'aly', 'AL3G38200' => 'aly', 'AL7G37580' => 'aly', 'AL7G42000' => 'aly', 'Aqoxy2G03228' => 'aox', 'Aqoxy4G02257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6H6MU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I5575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6FGN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGPF18' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG4QKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNA207' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT40GI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NP1GNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD899G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q67FBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2BILM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0GQ55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVK5KU' => 'arhy', 'AT3G23540' => 'ath', 'AT4G14290' => 'ath', 'AT4G17150' => 'ath', 'ATR0626G027' => 'atr', 'ATR0751G113' => 'atr', 'Atru.chr1.2207' => 'acertr', 'Atru.chr1.2226' => 'acertr', 'Atru.chr4.2667' => 'acertr', 'Atru.chr4.2668' => 'acertr', 'AUR62015194' => 'cqu', 'AUR62021798' => 'cqu', 'AUR62022512' => 'cqu', 'AUR62038384' => 'cqu', 'BcaB02g08621' => 'bca', 'BcaB04g18400' => 'bca', 'BcaB04g20445' => 'bca', 'BcaB06g26503' => 'bca', 'BcaB06g26504' => 'bca', 'BcaC02g09336' => 'bca', 'BcaC06g35538' => 'bca', 'BcaC07g38053' => 'bca', 'BolC1t03984H' => 'bol', 'BolC3t19944H' => 'bol', 'BolC4t25728H' => 'bol', 'BolC7t41866H' => 'bol', 'BolC8t48438H' => 'bol', 'BraA01t03283Z' => 'bra', 'BraA04t16471Z' => 'bra', 'BraA07t28676Z' => 'bra', 'BraA08t33274Z' => 'bra', 'BraA08t34387Z' => 'bra', 'C01p40230' => 'bna', 'C03p76890' => 'bna', 'C04p41460' => 'bna', 'C07p13710' => 'bna', 'CAN.G1456.14' => 'can', 'CAN.G522.7' => 'can', 'CANSAT78G1916' => 'cansat', 'CARHR099440' => 'chi', 'CARHR220470' => 'chi', 'CARHR223720' => 'chi', 'Carub.0003s2374' => 'cru', 'Carub.0007s2426' => 'cru', 'Carub.0007s2802' => 'cru', 'Ca_00609_v3' => 'car', 'Ca_13512_v3' => 'car', 'Ca_13516_v3' => 'car', 'Ca_21577_v3' => 'car', 'Ca_24686_v3' => 'car', 'Ca_28266_v3' => 'car', 'Ca_29751_v3' => 'car', 'CBR_g17709' => 'cbr', 'Cc03_g02950' => 'ccan', 'Cc09_g00070' => 'ccan', 'CDE02G3163' => 'cde', 'CDE05G0361' => 'cde', 'CDE05G2023' => 'cde', 'CDE05G3653' => 'cde', 'CDE11G0556' => 'cde', 'Cfa015556' => 'cfa', 'Cfa021531' => 'cfa', 'Ciclev10004606m.g' => 'ccl', 'Ciclev10015057m.g' => 'ccl', 'CiPaw.01G158100' => 'cil', 'CiPaw.02G090500' => 'cil', 'CiPaw.09G113100' => 'cil', 'CiPaw.10G085000' => 'cil', 'ClCG01G021010' => 'cla', 'ClCG06G005700' => 'cla', 'COL.COLO4_21623' => 'col', 'COL.COLO4_21624' => 'col', 'COL.COLO4_31968' => 'col', 'Cpa.g.sc16.49' => 'cpa', 'Cpa.g.sc27.184' => 'cpa', 'Cre07.g328950' => 'cre', 'CsaV3_6G005450' => 'csa', 'CsaV3_6G048000' => 'csa', 'CSS0003902' => 'camsi', 'CSS0016196' => 'camsi', 'CSS0021898' => 'camsi', 'CSS0027112' => 'camsi', 'CSS0044954' => 'camsi', 'CSS0044955' => 'camsi', 'DCAR_000334' => 'dca', 'DCAR_002423' => 'dca', 'DCAR_005489' => 'dca', 'Dinv04378' => 'din', 'Dinv14850' => 'din', 'Dinv16916' => 'din', 'Dinv44468' => 'din', 'Duzib151G1139' => 'dzi', 'Duzib192G1072' => 'dzi', 'Duzib212G0564' => 'dzi', 'ECA150G0003' => 'eca', 'ECA234G3826' => 'eca', 'EL10Ac8g20281' => 'bvu', 'EL10As19g24188' => 'bvu', 'Eucgr.B01162' => 'egr', 'Eucgr.E04233' => 'egr', 'FAN07G2289' => 'fan', 'FAN12G2278' => 'fan', 'FAN21G3334' => 'fan', 'FAN22G0102' => 'fan', 'FAN25G3252' => 'fan', 'FvH4_3g00060' => 'fve', 'FvH4_4g14200' => 'fve', 'Glyma.02G139950' => 'gma', 'Glyma.04G137300' => 'gma', 'Glyma.07G255200' => 'gma', 'Glyma.07G270200' => 'gma', 'Glyma.09G017500' => 'gma', 'Glyma.13G210700' => 'gma', 'Glyma.15G102100' => 'gma', 'Glyma.15G123200' => 'gma', 'Glyma.17G003700' => 'gma', 'Glyma.17G019100' => 'gma', 'Gohir.A05G177100' => 'ghi', 'Gohir.A10G115700' => 'ghi', 'Gohir.D05G180500' => 'ghi', 'Gohir.D10G150800' => 'ghi', 'Gorai.009G185500' => 'gra', 'Gorai.011G168000' => 'gra', 'GSVIVG01007067001' => 'vvi', 'GSVIVG01017869001' => 'vvi', 'HanXRQChr10g0310201' => 'han', 'HanXRQChr12g0359451' => 'han', 'HanXRQChr15g0470191' => 'han', 'Haze_00985' => 'cav', 'Haze_07062' => 'cav', 'Haze_07063' => 'cav', 'Hma1.2p1_0394F.1_g143410' => 'hma', 'Hma1.2p1_0511F.1_g169150' => 'hma', 'HPP92_012061' => 'vpl', 'HPP92_012078' => 'vpl', 'HPP92_021919' => 'vpl', 'HPP92_027044' => 'vpl', 'Hund12556' => 'sun', 'Lalb_Chr07g0177421' => 'lal', 'Lalb_Chr13g0304411' => 'lal', 'Lalb_Chr15g0088461' => 'lal', 'Lalb_Chr18g0057571' => 'lal', 'Lalb_Chr20g0118331' => 'lal', 'Lj2C254G8' => 'lonja', 'Lj4g0014611' => 'lja', 'Lj4g0028246' => 'lja', 'Lj6C664T14' => 'lonja', 'Lj6g0027253' => 'lja', 'Lj6g0027793' => 'lja', 'Lsat_1_v5_gn_5_78420' => 'lsa', 'Lsat_1_v5_gn_8_110041' => 'lsa', 'Manes.03G186500' => 'mes', 'Manes.08G014800' => 'mes', 'Manes.15G021600' => 'mes', 'Mapoly0016s0015' => 'mpo', 'MBI14_g12728_MAGBIO' => 'mbi', 'MBI15_g26854_MAGBIO' => 'mbi', 'MBI17_g29605_MAGBIO' => 'mbi', 'MCO09G851' => 'mco', 'MD05G1364500' => 'mdo', 'MD10G1342200' => 'mdo', 'MD10G1342300' => 'mdo', 'MD13G1180700' => 'mdo', 'MD16G1181400' => 'mdo', 'Medtr2g021260' => 'mtr', 'Medtr2g027870' => 'mtr', 'Medtr4g117570' => 'mtr', 'Medtr4g134350' => 'mtr', 'MELO3C007987.2' => 'cme', 'MELO3C021392.2' => 'cme', 'Migut.M01480' => 'egut', 'Migut.N00141' => 'egut', 'MSTRG.16076' => 'ama', 'MSTRG.21828' => 'ama', 'MSTRG.24761' => 'ama', 'MSTRG.7106' => 'ama', 'Nitab4.5_0000147g0120' => 'nta', 'Nitab4.5_0001663g0220' => 'nta', 'Nitab4.5_0006569g0040' => 'nta', 'Nn1g02133' => 'nnu', 'Nn1g07647' => 'nnu', 'Nn4g26155' => 'nnu', 'Oeu016930.1' => 'oeu', 'Oeu017918.1' => 'oeu', 'Oeu023654.1' => 'oeu', 'Oeu037670.3' => 'oeu', 'Os02g0197900' => 'osa', 'Os03g0359000' => 'osa', 'Os06g0609700' => 'osa', 'Peaxi162Scf00095g00087' => 'pax', 'Peaxi162Scf00563g00526' => 'pax', 'PGR004G1581' => 'pgr', 'PGR031G2583' => 'pgr', 'PGR042G0848' => 'pgr', 'PGSC0003DMG400004348' => 'stu', 'PGSC0003DMG400027260' => 'stu', 'Phvul.003G089300' => 'pvu', 'Phvul.003G096200' => 'pvu', 'Phvul.006G134600' => 'pvu', 'Phvul.006G155700' => 'pvu', 'Potri.006G000700' => 'ptr', 'Potri.008G200400' => 'ptr', 'Potri.010G029200' => 'ptr', 'Potri.016G001000' => 'ptr', 'Pp3c12_23220' => 'ppa', 'Pp3c4_3670' => 'ppa', 'PRCOL_00003839' => 'pco', 'Prupe.1G148800' => 'ppe', 'Prupe.4G000500' => 'ppe', 'Psat0s2550g0040' => 'psa', 'Psat1g148640' => 'psa', 'Psat1g171320' => 'psa', 'Psat1g184880' => 'psa', 'Psat4g030600' => 'psa', 'Psat5g259880' => 'psa', 'PSO170G6742' => 'pso', 'PSO407G0235' => 'pso', 'PSO541G0268' => 'pso', 'PSO675G8732' => 'pso', 'QL05p066200' => 'qlo', 'QL06p005887' => 'qlo', 'RcHm_v2.0_Chr4g0419001' => 'rch', 'RcHm_v2.0_Chr5g0000061' => 'rch', 'Rhsim02G0087600' => 'rsi', 'Sabra06G0000900' => 'sbr', 'Sabra10G0011900' => 'sbr', 'Sabra16G0007700' => 'sbr', 'SalBow8G3928' => 'sbo', 'Sc19g0004670' => 'sci', 'Sc24g0000030' => 'sci', 'Sc24g0000500' => 'sci', 'Sed0007994' => 'sed', 'Sed0008129' => 'sed', 'SEGI_01934' => 'sgi', 'SEGI_03497' => 'sgi', 'SEGI_23486' => 'sgi', 'SGA_v2.0_scaffold107G30773' => 'sas', 'SGA_v2.0_scaffold166G38387' => 'sas', 'SGA_v2.0_scaffold7G03652' => 'sas', 'SMO118G0161' => 'smo', 'Solyc01g080270.3' => 'sly', 'Solyc04g015300.3' => 'sly', 'Sopen01g032060' => 'spe', 'Sopen04g007380' => 'spe', 'Sp3g21200' => 'spa', 'Sp7g12300' => 'spa', 'Sp7g17040' => 'spa', 'TAR362G0597' => 'tar', 'TAR624G1228' => 'tar', 'TAR626G0216' => 'tar', 'TAR626G1613' => 'tar', 'TAR636G1144' => 'tar', 'THA.LOC104806750' => 'tha', 'THA.LOC104808656' => 'tha', 'Thecc.04G219300' => 'tca', 'Thecc.06G244600' => 'tca', 'Thhalv10020399m.g' => 'esa', 'Thhalv10024836m.g' => 'esa', 'Thhalv10027147m.g' => 'esa', 'TPR.G10484' => 'tpr', 'TPR.G20137' => 'tpr', 'TPR.G28917' => 'tpr', 'TPR.G5952' => 'tpr', 'TWI53G0188' => 'twi', 'TWI63G0140' => 'twi', 'TWI73G1105' => 'twi', 'unitig_32.g10791' => 'ugi', 'unitig_32.g11407' => 'ugi', 'unitig_748.g7615' => 'ugi', 'unitig_748.g8354' => 'ugi', 'vmacro08253' => 'vma', 'vmacro15707' => 'vma', 'VMungo0540G1913' => 'vmu', 'VMungo0540G1948' => 'vmu', 'VMungo0647G0037' => 'vmu', 'VMungo1215G0347' => 'vmu', 'VMungo1215G0371' => 'vmu', 'Zm00001eb017460' => 'zma', 'Zm00001eb236070' => 'zma', 'Zm00001eb276160' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002163' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002163' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002163' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002163' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002163', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '310', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p31530' => 'bna', 'A04p07830' => 'bna', 'A07p08850' => 'bna', 'A08p12910' => 'bna', 'A08p24320' => 'bna', 'Aa31LG8G9990' => 'aar', 'Aa31LG9G3080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.916' => 'aag', 'Actinidia23464' => 'ach', 'Actinidia26624' => 'ach', 'Actinidia40201' => 'ach', 'Ah.14g087330' => 'amhyb', 'AL3G28580' => 'aly', 'AL3G38200' => 'aly', 'AL7G37580' => 'aly', 'AL7G42000' => 'aly', 'Aqoxy2G03228' => 'aox', 'Aqoxy4G02257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6H6MU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I5575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6FGN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGPF18' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG4QKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNA207' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT40GI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NP1GNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD899G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q67FBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2BILM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0GQ55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVK5KU' => 'arhy', 'AT3G23540' => 'ath', 'AT4G14290' => 'ath', 'AT4G17150' => 'ath', 'ATR0626G027' => 'atr', 'ATR0751G113' => 'atr', 'Atru.chr1.2207' => 'acertr', 'Atru.chr1.2226' => 'acertr', 'Atru.chr4.2667' => 'acertr', 'Atru.chr4.2668' => 'acertr', 'AUR62015194' => 'cqu', 'AUR62021798' => 'cqu', 'AUR62022512' => 'cqu', 'AUR62038384' => 'cqu', 'BcaB02g08621' => 'bca', 'BcaB04g18400' => 'bca', 'BcaB04g20445' => 'bca', 'BcaB06g26503' => 'bca', 'BcaB06g26504' => 'bca', 'BcaC02g09336' => 'bca', 'BcaC06g35538' => 'bca', 'BcaC07g38053' => 'bca', 'BolC1t03984H' => 'bol', 'BolC3t19944H' => 'bol', 'BolC4t25728H' => 'bol', 'BolC7t41866H' => 'bol', 'BolC8t48438H' => 'bol', 'BraA01t03283Z' => 'bra', 'BraA04t16471Z' => 'bra', 'BraA07t28676Z' => 'bra', 'BraA08t33274Z' => 'bra', 'BraA08t34387Z' => 'bra', 'C01p40230' => 'bna', 'C03p76890' => 'bna', 'C04p41460' => 'bna', 'C07p13710' => 'bna', 'CAN.G1456.14' => 'can', 'CAN.G522.7' => 'can', 'CANSAT78G1916' => 'cansat', 'CARHR099440' => 'chi', 'CARHR220470' => 'chi', 'CARHR223720' => 'chi', 'Carub.0003s2374' => 'cru', 'Carub.0007s2426' => 'cru', 'Carub.0007s2802' => 'cru', 'Ca_00609_v3' => 'car', 'Ca_13512_v3' => 'car', 'Ca_13516_v3' => 'car', 'Ca_21577_v3' => 'car', 'Ca_24686_v3' => 'car', 'Ca_28266_v3' => 'car', 'Ca_29751_v3' => 'car', 'CBR_g17709' => 'cbr', 'Cc03_g02950' => 'ccan', 'Cc09_g00070' => 'ccan', 'CDE02G3163' => 'cde', 'CDE05G0361' => 'cde', 'CDE05G2023' => 'cde', 'CDE05G3653' => 'cde', 'CDE11G0556' => 'cde', 'Cfa015556' => 'cfa', 'Cfa021531' => 'cfa', 'Ciclev10004606m.g' => 'ccl', 'Ciclev10015057m.g' => 'ccl', 'CiPaw.01G158100' => 'cil', 'CiPaw.02G090500' => 'cil', 'CiPaw.09G113100' => 'cil', 'CiPaw.10G085000' => 'cil', 'ClCG01G021010' => 'cla', 'ClCG06G005700' => 'cla', 'COL.COLO4_21623' => 'col', 'COL.COLO4_21624' => 'col', 'COL.COLO4_31968' => 'col', 'Cpa.g.sc16.49' => 'cpa', 'Cpa.g.sc27.184' => 'cpa', 'Cre07.g328950' => 'cre', 'CsaV3_6G005450' => 'csa', 'CsaV3_6G048000' => 'csa', 'CSS0003902' => 'camsi', 'CSS0016196' => 'camsi', 'CSS0021898' => 'camsi', 'CSS0027112' => 'camsi', 'CSS0044954' => 'camsi', 'CSS0044955' => 'camsi', 'DCAR_000334' => 'dca', 'DCAR_002423' => 'dca', 'DCAR_005489' => 'dca', 'Dinv04378' => 'din', 'Dinv14850' => 'din', 'Dinv16916' => 'din', 'Dinv44468' => 'din', 'Duzib151G1139' => 'dzi', 'Duzib192G1072' => 'dzi', 'Duzib212G0564' => 'dzi', 'ECA150G0003' => 'eca', 'ECA234G3826' => 'eca', 'EL10Ac8g20281' => 'bvu', 'EL10As19g24188' => 'bvu', 'Eucgr.B01162' => 'egr', 'Eucgr.E04233' => 'egr', 'FAN07G2289' => 'fan', 'FAN12G2278' => 'fan', 'FAN21G3334' => 'fan', 'FAN22G0102' => 'fan', 'FAN25G3252' => 'fan', 'FvH4_3g00060' => 'fve', 'FvH4_4g14200' => 'fve', 'Glyma.02G139950' => 'gma', 'Glyma.04G137300' => 'gma', 'Glyma.07G255200' => 'gma', 'Glyma.07G270200' => 'gma', 'Glyma.09G017500' => 'gma', 'Glyma.13G210700' => 'gma', 'Glyma.15G102100' => 'gma', 'Glyma.15G123200' => 'gma', 'Glyma.17G003700' => 'gma', 'Glyma.17G019100' => 'gma', 'Gohir.A05G177100' => 'ghi', 'Gohir.A10G115700' => 'ghi', 'Gohir.D05G180500' => 'ghi', 'Gohir.D10G150800' => 'ghi', 'Gorai.009G185500' => 'gra', 'Gorai.011G168000' => 'gra', 'GSVIVG01007067001' => 'vvi', 'GSVIVG01017869001' => 'vvi', 'HanXRQChr10g0310201' => 'han', 'HanXRQChr12g0359451' => 'han', 'HanXRQChr15g0470191' => 'han', 'Haze_00985' => 'cav', 'Haze_07062' => 'cav', 'Haze_07063' => 'cav', 'Hma1.2p1_0394F.1_g143410' => 'hma', 'Hma1.2p1_0511F.1_g169150' => 'hma', 'HPP92_012061' => 'vpl', 'HPP92_012078' => 'vpl', 'HPP92_021919' => 'vpl', 'HPP92_027044' => 'vpl', 'Hund12556' => 'sun', 'Lalb_Chr07g0177421' => 'lal', 'Lalb_Chr13g0304411' => 'lal', 'Lalb_Chr15g0088461' => 'lal', 'Lalb_Chr18g0057571' => 'lal', 'Lalb_Chr20g0118331' => 'lal', 'Lj2C254G8' => 'lonja', 'Lj4g0014611' => 'lja', 'Lj4g0028246' => 'lja', 'Lj6C664T14' => 'lonja', 'Lj6g0027253' => 'lja', 'Lj6g0027793' => 'lja', 'Lsat_1_v5_gn_5_78420' => 'lsa', 'Lsat_1_v5_gn_8_110041' => 'lsa', 'Manes.03G186500' => 'mes', 'Manes.08G014800' => 'mes', 'Manes.15G021600' => 'mes', 'Mapoly0016s0015' => 'mpo', 'MBI14_g12728_MAGBIO' => 'mbi', 'MBI15_g26854_MAGBIO' => 'mbi', 'MBI17_g29605_MAGBIO' => 'mbi', 'MCO09G851' => 'mco', 'MD05G1364500' => 'mdo', 'MD10G1342200' => 'mdo', 'MD10G1342300' => 'mdo', 'MD13G1180700' => 'mdo', 'MD16G1181400' => 'mdo', 'Medtr2g021260' => 'mtr', 'Medtr2g027870' => 'mtr', 'Medtr4g117570' => 'mtr', 'Medtr4g134350' => 'mtr', 'MELO3C007987.2' => 'cme', 'MELO3C021392.2' => 'cme', 'Migut.M01480' => 'egut', 'Migut.N00141' => 'egut', 'MSTRG.16076' => 'ama', 'MSTRG.21828' => 'ama', 'MSTRG.24761' => 'ama', 'MSTRG.7106' => 'ama', 'Nitab4.5_0000147g0120' => 'nta', 'Nitab4.5_0001663g0220' => 'nta', 'Nitab4.5_0006569g0040' => 'nta', 'Nn1g02133' => 'nnu', 'Nn1g07647' => 'nnu', 'Nn4g26155' => 'nnu', 'Oeu016930.1' => 'oeu', 'Oeu017918.1' => 'oeu', 'Oeu023654.1' => 'oeu', 'Oeu037670.3' => 'oeu', 'Os02g0197900' => 'osa', 'Os03g0359000' => 'osa', 'Os06g0609700' => 'osa', 'Peaxi162Scf00095g00087' => 'pax', 'Peaxi162Scf00563g00526' => 'pax', 'PGR004G1581' => 'pgr', 'PGR031G2583' => 'pgr', 'PGR042G0848' => 'pgr', 'PGSC0003DMG400004348' => 'stu', 'PGSC0003DMG400027260' => 'stu', 'Phvul.003G089300' => 'pvu', 'Phvul.003G096200' => 'pvu', 'Phvul.006G134600' => 'pvu', 'Phvul.006G155700' => 'pvu', 'Potri.006G000700' => 'ptr', 'Potri.008G200400' => 'ptr', 'Potri.010G029200' => 'ptr', 'Potri.016G001000' => 'ptr', 'Pp3c12_23220' => 'ppa', 'Pp3c4_3670' => 'ppa', 'PRCOL_00003839' => 'pco', 'Prupe.1G148800' => 'ppe', 'Prupe.4G000500' => 'ppe', 'Psat0s2550g0040' => 'psa', 'Psat1g148640' => 'psa', 'Psat1g171320' => 'psa', 'Psat1g184880' => 'psa', 'Psat4g030600' => 'psa', 'Psat5g259880' => 'psa', 'PSO170G6742' => 'pso', 'PSO407G0235' => 'pso', 'PSO541G0268' => 'pso', 'PSO675G8732' => 'pso', 'QL05p066200' => 'qlo', 'QL06p005887' => 'qlo', 'RcHm_v2.0_Chr4g0419001' => 'rch', 'RcHm_v2.0_Chr5g0000061' => 'rch', 'Rhsim02G0087600' => 'rsi', 'Sabra06G0000900' => 'sbr', 'Sabra10G0011900' => 'sbr', 'Sabra16G0007700' => 'sbr', 'SalBow8G3928' => 'sbo', 'Sc19g0004670' => 'sci', 'Sc24g0000030' => 'sci', 'Sc24g0000500' => 'sci', 'Sed0007994' => 'sed', 'Sed0008129' => 'sed', 'SEGI_01934' => 'sgi', 'SEGI_03497' => 'sgi', 'SEGI_23486' => 'sgi', 'SGA_v2.0_scaffold107G30773' => 'sas', 'SGA_v2.0_scaffold166G38387' => 'sas', 'SGA_v2.0_scaffold7G03652' => 'sas', 'SMO118G0161' => 'smo', 'Solyc01g080270.3' => 'sly', 'Solyc04g015300.3' => 'sly', 'Sopen01g032060' => 'spe', 'Sopen04g007380' => 'spe', 'Sp3g21200' => 'spa', 'Sp7g12300' => 'spa', 'Sp7g17040' => 'spa', 'TAR362G0597' => 'tar', 'TAR624G1228' => 'tar', 'TAR626G0216' => 'tar', 'TAR626G1613' => 'tar', 'TAR636G1144' => 'tar', 'THA.LOC104806750' => 'tha', 'THA.LOC104808656' => 'tha', 'Thecc.04G219300' => 'tca', 'Thecc.06G244600' => 'tca', 'Thhalv10020399m.g' => 'esa', 'Thhalv10024836m.g' => 'esa', 'Thhalv10027147m.g' => 'esa', 'TPR.G10484' => 'tpr', 'TPR.G20137' => 'tpr', 'TPR.G28917' => 'tpr', 'TPR.G5952' => 'tpr', 'TWI53G0188' => 'twi', 'TWI63G0140' => 'twi', 'TWI73G1105' => 'twi', 'unitig_32.g10791' => 'ugi', 'unitig_32.g11407' => 'ugi', 'unitig_748.g7615' => 'ugi', 'unitig_748.g8354' => 'ugi', 'vmacro08253' => 'vma', 'vmacro15707' => 'vma', 'VMungo0540G1913' => 'vmu', 'VMungo0540G1948' => 'vmu', 'VMungo0647G0037' => 'vmu', 'VMungo1215G0347' => 'vmu', 'VMungo1215G0371' => 'vmu', 'Zm00001eb017460' => 'zma', 'Zm00001eb236070' => 'zma', 'Zm00001eb276160' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002163', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002163' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002163', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '310', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002163' ) ), 'genes' => array( 'A01p31530' => 'bna', 'A04p07830' => 'bna', 'A07p08850' => 'bna', 'A08p12910' => 'bna', 'A08p24320' => 'bna', 'Aa31LG8G9990' => 'aar', 'Aa31LG9G3080' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.916' => 'aag', 'Actinidia23464' => 'ach', 'Actinidia26624' => 'ach', 'Actinidia40201' => 'ach', 'Ah.14g087330' => 'amhyb', 'AL3G28580' => 'aly', 'AL3G38200' => 'aly', 'AL7G37580' => 'aly', 'AL7G42000' => 'aly', 'Aqoxy2G03228' => 'aox', 'Aqoxy4G02257' => 'aox', 'arahy.Tifrunner.gnm1.ann1.6H6MU0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7I5575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H6FGN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HGPF18' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LG4QKN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LNA207' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LT40GI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NP1GNU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PD899G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q67FBH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T2BILM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V0GQ55' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZVK5KU' => 'arhy', 'AT3G23540' => 'ath', 'AT4G14290' => 'ath', 'AT4G17150' => 'ath', 'ATR0626G027' => 'atr', 'ATR0751G113' => 'atr', 'Atru.chr1.2207' => 'acertr', 'Atru.chr1.2226' => 'acertr', 'Atru.chr4.2667' => 'acertr', 'Atru.chr4.2668' => 'acertr', 'AUR62015194' => 'cqu', 'AUR62021798' => 'cqu', 'AUR62022512' => 'cqu', 'AUR62038384' => 'cqu', 'BcaB02g08621' => 'bca', 'BcaB04g18400' => 'bca', 'BcaB04g20445' => 'bca', 'BcaB06g26503' => 'bca', 'BcaB06g26504' => 'bca', 'BcaC02g09336' => 'bca', 'BcaC06g35538' => 'bca', 'BcaC07g38053' => 'bca', 'BolC1t03984H' => 'bol', 'BolC3t19944H' => 'bol', 'BolC4t25728H' => 'bol', 'BolC7t41866H' => 'bol', 'BolC8t48438H' => 'bol', 'BraA01t03283Z' => 'bra', 'BraA04t16471Z' => 'bra', 'BraA07t28676Z' => 'bra', 'BraA08t33274Z' => 'bra', 'BraA08t34387Z' => 'bra', 'C01p40230' => 'bna', 'C03p76890' => 'bna', 'C04p41460' => 'bna', 'C07p13710' => 'bna', 'CAN.G1456.14' => 'can', 'CAN.G522.7' => 'can', 'CANSAT78G1916' => 'cansat', 'CARHR099440' => 'chi', 'CARHR220470' => 'chi', 'CARHR223720' => 'chi', 'Carub.0003s2374' => 'cru', 'Carub.0007s2426' => 'cru', 'Carub.0007s2802' => 'cru', 'Ca_00609_v3' => 'car', 'Ca_13512_v3' => 'car', 'Ca_13516_v3' => 'car', 'Ca_21577_v3' => 'car', 'Ca_24686_v3' => 'car', 'Ca_28266_v3' => 'car', 'Ca_29751_v3' => 'car', 'CBR_g17709' => 'cbr', 'Cc03_g02950' => 'ccan', 'Cc09_g00070' => 'ccan', 'CDE02G3163' => 'cde', 'CDE05G0361' => 'cde', 'CDE05G2023' => 'cde', 'CDE05G3653' => 'cde', 'CDE11G0556' => 'cde', 'Cfa015556' => 'cfa', 'Cfa021531' => 'cfa', 'Ciclev10004606m.g' => 'ccl', 'Ciclev10015057m.g' => 'ccl', 'CiPaw.01G158100' => 'cil', 'CiPaw.02G090500' => 'cil', 'CiPaw.09G113100' => 'cil', 'CiPaw.10G085000' => 'cil', 'ClCG01G021010' => 'cla', 'ClCG06G005700' => 'cla', 'COL.COLO4_21623' => 'col', 'COL.COLO4_21624' => 'col', 'COL.COLO4_31968' => 'col', 'Cpa.g.sc16.49' => 'cpa', 'Cpa.g.sc27.184' => 'cpa', 'Cre07.g328950' => 'cre', 'CsaV3_6G005450' => 'csa', 'CsaV3_6G048000' => 'csa', 'CSS0003902' => 'camsi', 'CSS0016196' => 'camsi', 'CSS0021898' => 'camsi', 'CSS0027112' => 'camsi', 'CSS0044954' => 'camsi', 'CSS0044955' => 'camsi', 'DCAR_000334' => 'dca', 'DCAR_002423' => 'dca', 'DCAR_005489' => 'dca', 'Dinv04378' => 'din', 'Dinv14850' => 'din', 'Dinv16916' => 'din', 'Dinv44468' => 'din', 'Duzib151G1139' => 'dzi', 'Duzib192G1072' => 'dzi', 'Duzib212G0564' => 'dzi', 'ECA150G0003' => 'eca', 'ECA234G3826' => 'eca', 'EL10Ac8g20281' => 'bvu', 'EL10As19g24188' => 'bvu', 'Eucgr.B01162' => 'egr', 'Eucgr.E04233' => 'egr', 'FAN07G2289' => 'fan', 'FAN12G2278' => 'fan', 'FAN21G3334' => 'fan', 'FAN22G0102' => 'fan', 'FAN25G3252' => 'fan', 'FvH4_3g00060' => 'fve', 'FvH4_4g14200' => 'fve', 'Glyma.02G139950' => 'gma', 'Glyma.04G137300' => 'gma', 'Glyma.07G255200' => 'gma', 'Glyma.07G270200' => 'gma', 'Glyma.09G017500' => 'gma', 'Glyma.13G210700' => 'gma', 'Glyma.15G102100' => 'gma', 'Glyma.15G123200' => 'gma', 'Glyma.17G003700' => 'gma', 'Glyma.17G019100' => 'gma', 'Gohir.A05G177100' => 'ghi', 'Gohir.A10G115700' => 'ghi', 'Gohir.D05G180500' => 'ghi', 'Gohir.D10G150800' => 'ghi', 'Gorai.009G185500' => 'gra', 'Gorai.011G168000' => 'gra', 'GSVIVG01007067001' => 'vvi', 'GSVIVG01017869001' => 'vvi', 'HanXRQChr10g0310201' => 'han', 'HanXRQChr12g0359451' => 'han', 'HanXRQChr15g0470191' => 'han', 'Haze_00985' => 'cav', 'Haze_07062' => 'cav', 'Haze_07063' => 'cav', 'Hma1.2p1_0394F.1_g143410' => 'hma', 'Hma1.2p1_0511F.1_g169150' => 'hma', 'HPP92_012061' => 'vpl', 'HPP92_012078' => 'vpl', 'HPP92_021919' => 'vpl', 'HPP92_027044' => 'vpl', 'Hund12556' => 'sun', 'Lalb_Chr07g0177421' => 'lal', 'Lalb_Chr13g0304411' => 'lal', 'Lalb_Chr15g0088461' => 'lal', 'Lalb_Chr18g0057571' => 'lal', 'Lalb_Chr20g0118331' => 'lal', 'Lj2C254G8' => 'lonja', 'Lj4g0014611' => 'lja', 'Lj4g0028246' => 'lja', 'Lj6C664T14' => 'lonja', 'Lj6g0027253' => 'lja', 'Lj6g0027793' => 'lja', 'Lsat_1_v5_gn_5_78420' => 'lsa', 'Lsat_1_v5_gn_8_110041' => 'lsa', 'Manes.03G186500' => 'mes', 'Manes.08G014800' => 'mes', 'Manes.15G021600' => 'mes', 'Mapoly0016s0015' => 'mpo', 'MBI14_g12728_MAGBIO' => 'mbi', 'MBI15_g26854_MAGBIO' => 'mbi', 'MBI17_g29605_MAGBIO' => 'mbi', 'MCO09G851' => 'mco', 'MD05G1364500' => 'mdo', 'MD10G1342200' => 'mdo', 'MD10G1342300' => 'mdo', 'MD13G1180700' => 'mdo', 'MD16G1181400' => 'mdo', 'Medtr2g021260' => 'mtr', 'Medtr2g027870' => 'mtr', 'Medtr4g117570' => 'mtr', 'Medtr4g134350' => 'mtr', 'MELO3C007987.2' => 'cme', 'MELO3C021392.2' => 'cme', 'Migut.M01480' => 'egut', 'Migut.N00141' => 'egut', 'MSTRG.16076' => 'ama', 'MSTRG.21828' => 'ama', 'MSTRG.24761' => 'ama', 'MSTRG.7106' => 'ama', 'Nitab4.5_0000147g0120' => 'nta', 'Nitab4.5_0001663g0220' => 'nta', 'Nitab4.5_0006569g0040' => 'nta', 'Nn1g02133' => 'nnu', 'Nn1g07647' => 'nnu', 'Nn4g26155' => 'nnu', 'Oeu016930.1' => 'oeu', 'Oeu017918.1' => 'oeu', 'Oeu023654.1' => 'oeu', 'Oeu037670.3' => 'oeu', 'Os02g0197900' => 'osa', 'Os03g0359000' => 'osa', 'Os06g0609700' => 'osa', 'Peaxi162Scf00095g00087' => 'pax', 'Peaxi162Scf00563g00526' => 'pax', 'PGR004G1581' => 'pgr', 'PGR031G2583' => 'pgr', 'PGR042G0848' => 'pgr', 'PGSC0003DMG400004348' => 'stu', 'PGSC0003DMG400027260' => 'stu', 'Phvul.003G089300' => 'pvu', 'Phvul.003G096200' => 'pvu', 'Phvul.006G134600' => 'pvu', 'Phvul.006G155700' => 'pvu', 'Potri.006G000700' => 'ptr', 'Potri.008G200400' => 'ptr', 'Potri.010G029200' => 'ptr', 'Potri.016G001000' => 'ptr', 'Pp3c12_23220' => 'ppa', 'Pp3c4_3670' => 'ppa', 'PRCOL_00003839' => 'pco', 'Prupe.1G148800' => 'ppe', 'Prupe.4G000500' => 'ppe', 'Psat0s2550g0040' => 'psa', 'Psat1g148640' => 'psa', 'Psat1g171320' => 'psa', 'Psat1g184880' => 'psa', 'Psat4g030600' => 'psa', 'Psat5g259880' => 'psa', 'PSO170G6742' => 'pso', 'PSO407G0235' => 'pso', 'PSO541G0268' => 'pso', 'PSO675G8732' => 'pso', 'QL05p066200' => 'qlo', 'QL06p005887' => 'qlo', 'RcHm_v2.0_Chr4g0419001' => 'rch', 'RcHm_v2.0_Chr5g0000061' => 'rch', 'Rhsim02G0087600' => 'rsi', 'Sabra06G0000900' => 'sbr', 'Sabra10G0011900' => 'sbr', 'Sabra16G0007700' => 'sbr', 'SalBow8G3928' => 'sbo', 'Sc19g0004670' => 'sci', 'Sc24g0000030' => 'sci', 'Sc24g0000500' => 'sci', 'Sed0007994' => 'sed', 'Sed0008129' => 'sed', 'SEGI_01934' => 'sgi', 'SEGI_03497' => 'sgi', 'SEGI_23486' => 'sgi', 'SGA_v2.0_scaffold107G30773' => 'sas', 'SGA_v2.0_scaffold166G38387' => 'sas', 'SGA_v2.0_scaffold7G03652' => 'sas', 'SMO118G0161' => 'smo', 'Solyc01g080270.3' => 'sly', 'Solyc04g015300.3' => 'sly', 'Sopen01g032060' => 'spe', 'Sopen04g007380' => 'spe', 'Sp3g21200' => 'spa', 'Sp7g12300' => 'spa', 'Sp7g17040' => 'spa', 'TAR362G0597' => 'tar', 'TAR624G1228' => 'tar', 'TAR626G0216' => 'tar', 'TAR626G1613' => 'tar', 'TAR636G1144' => 'tar', 'THA.LOC104806750' => 'tha', 'THA.LOC104808656' => 'tha', 'Thecc.04G219300' => 'tca', 'Thecc.06G244600' => 'tca', 'Thhalv10020399m.g' => 'esa', 'Thhalv10024836m.g' => 'esa', 'Thhalv10027147m.g' => 'esa', 'TPR.G10484' => 'tpr', 'TPR.G20137' => 'tpr', 'TPR.G28917' => 'tpr', 'TPR.G5952' => 'tpr', 'TWI53G0188' => 'twi', 'TWI63G0140' => 'twi', 'TWI73G1105' => 'twi', 'unitig_32.g10791' => 'ugi', 'unitig_32.g11407' => 'ugi', 'unitig_748.g7615' => 'ugi', 'unitig_748.g8354' => 'ugi', 'vmacro08253' => 'vma', 'vmacro15707' => 'vma', 'VMungo0540G1913' => 'vmu', 'VMungo0540G1948' => 'vmu', 'VMungo0647G0037' => 'vmu', 'VMungo1215G0347' => 'vmu', 'VMungo1215G0371' => 'vmu', 'Zm00001eb017460' => 'zma', 'Zm00001eb236070' => 'zma', 'Zm00001eb276160' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002163' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002163' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002163' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002163' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151