Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002133', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '314', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A07p11580' => 'bna', 'A08p26060' => 'bna', 'A09p38330' => 'bna', 'Aa31sc113G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.183' => 'aag', 'Actinidia00373' => 'ach', 'Actinidia00374' => 'ach', 'Actinidia10193' => 'ach', 'Actinidia22690' => 'ach', 'Actinidia38102' => 'ach', 'Ah.11g039780' => 'amhyb', 'AL1G41310' => 'aly', 'Aqoxy1G02357' => 'aox', 'Aqoxy1G02406' => 'aox', 'Aqoxy1G02502' => 'aox', 'Aqoxy1G02669' => 'aox', 'Aqoxy1G02887' => 'aox', 'Aqoxy1G03040' => 'aox', 'Aqoxy2G02320' => 'aox', 'Aqoxy5G00879' => 'aox', 'Aqoxy5G03178' => 'aox', 'Aqoxy5G03179' => 'aox', 'Aqoxy6G02657' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MR8KE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60DR5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68HS6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZRQ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0RFJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C26UD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CH195H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFKR07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXTN9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VTP83K' => 'arhy', 'AT1G27760' => 'ath', 'ATR0208G038' => 'atr', 'Atru.chr13.822' => 'acertr', 'AUR62022485' => 'cqu', 'AUR62037427' => 'cqu', 'BcaB03g13968' => 'bca', 'BcaB08g34833' => 'bca', 'BcaC01g01568' => 'bca', 'BcaC01g01569' => 'bca', 'BcaC01g01570' => 'bca', 'BcaC05g26776' => 'bca', 'BcaC06g35320' => 'bca', 'BcaNung06154' => 'bca', 'BolC3t19708H' => 'bol', 'BolC5t31367H' => 'bol', 'BolC7t42251H' => 'bol', 'BraA07t28946Z' => 'bra', 'BraA08t34556Z' => 'bra', 'BraA09t39343Z' => 'bra', 'C03p74600' => 'bna', 'C05p26460' => 'bna', 'C07p17460' => 'bna', 'CAN.G107.49' => 'can', 'CAN.G504.35' => 'can', 'CAN.G724.13' => 'can', 'CANSAT25G1442' => 'cansat', 'CANSAT80G1456' => 'cansat', 'CARHR027280' => 'chi', 'Carub.0001s2628' => 'cru', 'Ca_15902_v3' => 'car', 'CBR_g3782' => 'cbr', 'Cc10_g05710' => 'ccan', 'CDE02G2866' => 'cde', 'CDE04G2518' => 'cde', 'Ciclev10001181m.g' => 'ccl', 'CiPaw.07G175700' => 'cil', 'CiPaw.08G049800' => 'cil', 'ClCG05G020570' => 'cla', 'COL.COLO4_28515' => 'col', 'Cpa.g.sc142.18' => 'cpa', 'Cre03.g202500' => 'cre', 'CsaV3_4G035010' => 'csa', 'CSS0013335' => 'camsi', 'CSS0015739' => 'camsi', 'CSS0028243' => 'camsi', 'CSS0038052' => 'camsi', 'DCAR_009883' => 'dca', 'DCAR_013721' => 'dca', 'DCAR_016840' => 'dca', 'DCAR_020073' => 'dca', 'Dinv04580' => 'din', 'Dinv39230' => 'din', 'Dinv44960' => 'din', 'Duzib041G0730' => 'dzi', 'Duzib052G0091' => 'dzi', 'Duzib093G0932' => 'dzi', 'Duzib116G0883' => 'dzi', 'ECA232G3220' => 'eca', 'ECA246G3335' => 'eca', 'EL10Ac1g02389' => 'bvu', 'Eucgr.F02256' => 'egr', 'Eucgr.I01064' => 'egr', 'FAN04G0376' => 'fan', 'FAN15G1432' => 'fan', 'FAN15G1988' => 'fan', 'FAN15G2993' => 'fan', 'FAN18G1869' => 'fan', 'FAN19G2748' => 'fan', 'FAN20G1995' => 'fan', 'FAN20G2377' => 'fan', 'FAN20G3115' => 'fan', 'FAN24G1433' => 'fan', 'FAN24G2013' => 'fan', 'FAN24G2138' => 'fan', 'FAN24G2512' => 'fan', 'FAN26G1173' => 'fan', 'FAN26G3182' => 'fan', 'FAN27G0263' => 'fan', 'FAN27G1056' => 'fan', 'FAN27G1207' => 'fan', 'FAN27G1338' => 'fan', 'FvH4_1g08070' => 'fve', 'FvH4_2g04330' => 'fve', 'FvH4_2g32270' => 'fve', 'FvH4_2g33200' => 'fve', 'FvH4_5g33120' => 'fve', 'Glyma.04G045600' => 'gma', 'Glyma.06G046300' => 'gma', 'Glyma.14G089009' => 'gma', 'Glyma.17G235100' => 'gma', 'Gohir.A02G017701' => 'ghi', 'Gohir.A02G081200' => 'ghi', 'Gohir.A05G209400' => 'ghi', 'Gohir.A05G263101' => 'ghi', 'Gohir.A06G111004' => 'ghi', 'Gohir.A07G032566' => 'ghi', 'Gohir.A07G129601' => 'ghi', 'Gohir.A07G155050' => 'ghi', 'Gohir.A09G170450' => 'ghi', 'Gohir.A10G175251' => 'ghi', 'Gohir.A13G046500' => 'ghi', 'Gohir.A13G189950' => 'ghi', 'Gohir.D02G088900' => 'ghi', 'Gohir.D03G104750' => 'ghi', 'Gohir.D04G071950' => 'ghi', 'Gohir.D05G212800' => 'ghi', 'Gohir.D05G265300' => 'ghi', 'Gohir.D07G033450' => 'ghi', 'Gohir.D08G111408' => 'ghi', 'Gohir.D10G122550' => 'ghi', 'Gohir.D13G042500' => 'ghi', 'Gorai.003G110700' => 'gra', 'Gorai.005G099600' => 'gra', 'Gorai.007G097500' => 'gra', 'Gorai.009G219300' => 'gra', 'Gorai.009G277100' => 'gra', 'Gorai.011G135000' => 'gra', 'Gorai.013G050400' => 'gra', 'GSVIVG01009354001' => 'vvi', 'GSVIVG01009839001' => 'vvi', 'GSVIVG01037843001' => 'vvi', 'HanXRQChr01g0027951' => 'han', 'HanXRQChr06g0175321' => 'han', 'HanXRQChr09g0266701' => 'han', 'Haze_22448' => 'cav', 'Hma1.2p1_0819F.1_g223760' => 'hma', 'Hma1.2p1_1059F.1_g252940' => 'hma', 'HPP92_009539' => 'vpl', 'Hund24035' => 'sun', 'Lalb_Chr02g0144991' => 'lal', 'Lalb_Chr08g0245541' => 'lal', 'Lalb_Chr22g0355651' => 'lal', 'Lalb_Chr23g0267501' => 'lal', 'Lj1g0026971' => 'lja', 'Lj4A70G38' => 'lonja', 'Lj4A759T44' => 'lonja', 'Lj4A759T45' => 'lonja', 'Lj5A219T39' => 'lonja', 'Lj5g0009817' => 'lja', 'Lsat_1_v5_gn_3_33441' => 'lsa', 'Lsat_1_v5_gn_4_131141' => 'lsa', 'Lsat_1_v5_gn_4_93941' => 'lsa', 'Lsat_1_v5_gn_6_112361' => 'lsa', 'Lsat_1_v5_gn_6_23981' => 'lsa', 'Manes.05G181400' => 'mes', 'Manes.18G045800' => 'mes', 'Mapoly0071s0061' => 'mpo', 'MBI16_g01178_MAGBIO' => 'mbi', 'MBI16_g01179_MAGBIO' => 'mbi', 'MBI16_g01180_MAGBIO' => 'mbi', 'MBI18_g24148_MAGBIO' => 'mbi', 'MD00G1169900' => 'mdo', 'MD00G1170100' => 'mdo', 'MD08G1085400' => 'mdo', 'MD08G1085500' => 'mdo', 'MD08G1085800' => 'mdo', 'MD10G1105600' => 'mdo', 'MD10G1151100' => 'mdo', 'MD15G1071000' => 'mdo', 'Medtr3g103090' => 'mtr', 'MELO3C016813.2' => 'cme', 'Migut.N01141' => 'egut', 'Migut.N02776' => 'egut', 'MSTRG.22223' => 'ama', 'MSTRG.24371' => 'ama', 'MSTRG.27763' => 'ama', 'Nitab4.5_0000068g0520' => 'nta', 'Nitab4.5_0000164g0130' => 'nta', 'Nitab4.5_0000569g0190' => 'nta', 'Nitab4.5_0001298g0040' => 'nta', 'Nitab4.5_0002314g0110' => 'nta', 'Nitab4.5_0002968g0020' => 'nta', 'Nitab4.5_0003803g0030' => 'nta', 'Nitab4.5_0005301g0030' => 'nta', 'Nn1g03720' => 'nnu', 'Nn1g04581' => 'nnu', 'Nn2g15136' => 'nnu', 'Nn5g30562' => 'nnu', 'Nn8g39787' => 'nnu', 'Oeu037279.1' => 'oeu', 'Oeu037500.1' => 'oeu', 'Oeu048578.1' => 'oeu', 'Os02g0219000' => 'osa', 'Os02g0219050' => 'osa', 'Os03g0448700' => 'osa', 'Os07g0588000' => 'osa', 'Os08g0491400' => 'osa', 'Peaxi162Scf00003g04822' => 'pax', 'Peaxi162Scf00017g02838' => 'pax', 'Peaxi162Scf00081g01710' => 'pax', 'Peaxi162Scf00102g01358' => 'pax', 'Peaxi162Scf00179g00010' => 'pax', 'Peaxi162Scf00179g00011' => 'pax', 'Peaxi162Scf00267g00614' => 'pax', 'PGR031G1293' => 'pgr', 'PGR120G0002' => 'pgr', 'PGR142G2399' => 'pgr', 'PGSC0003DMG400010671' => 'stu', 'PGSC0003DMG400011546' => 'stu', 'PGSC0003DMG400021507' => 'stu', 'Phvul.001G027600' => 'pvu', 'Phvul.009G071500' => 'pvu', 'Potri.002G119100' => 'ptr', 'Potri.009G088700' => 'ptr', 'Potri.014G016800' => 'ptr', 'Pp3c11_19710' => 'ppa', 'Pp3c20_9970' => 'ppa', 'Pp3c23_4310' => 'ppa', 'Prupe.1G423700' => 'ppe', 'Prupe.3G276000' => 'ppe', 'Prupe.8G144400' => 'ppe', 'Psat5g039040' => 'psa', 'PSO017G4718' => 'pso', 'PSO170G0233' => 'pso', 'PSO541G1264' => 'pso', 'PSO675G0857' => 'pso', 'PSO675G6693' => 'pso', 'QL12p037925' => 'qlo', 'RcHm_v2.0_Chr2g0094131' => 'rch', 'RcHm_v2.0_Chr6g0253771' => 'rch', 'RcHm_v2.0_Chr6g0309471' => 'rch', 'Rhsim06G0061800' => 'rsi', 'Rhsim11G0151300' => 'rsi', 'Rhsim11G0151500' => 'rsi', 'Rhsim11G0152900' => 'rsi', 'Sabra02G0093600' => 'sbr', 'SalBow7G0136' => 'sbo', 'Sc15g0003510' => 'sci', 'Sed0019340' => 'sed', 'SGA_v2.0_scaffold219G42529' => 'sas', 'SGA_v2.0_scaffold28G11825' => 'sas', 'SMO141G0038' => 'smo', 'SMO174G0013' => 'smo', 'SMO174G0098' => 'smo', 'SMO174G0244' => 'smo', 'SMO296G0017' => 'smo', 'SMO296G0027' => 'smo', 'SMO296G0038' => 'smo', 'SMO296G0039' => 'smo', 'SMO353G0413' => 'smo', 'Solyc01g106150.1' => 'sly', 'Solyc04g077920.3' => 'sly', 'Solyc12g088370.2' => 'sly', 'Sopen00g013750' => 'spe', 'Sopen01g048530' => 'spe', 'Sopen04g031520' => 'spe', 'Sopen12g030350' => 'spe', 'Sp1g24010' => 'spa', 'TAR376G0191' => 'tar', 'TAR376G1139' => 'tar', 'TAR381G1089' => 'tar', 'TAR625G0071' => 'tar', 'TAR628G0276' => 'tar', 'TAR628G1204' => 'tar', 'THA.LOC104814188' => 'tha', 'THA.LOC104820516' => 'tha', 'Thecc.02G114600' => 'tca', 'Thecc.02G116500' => 'tca', 'Thecc.08G089800' => 'tca', 'Thhalv10001793m.g' => 'esa', 'Thhalv10007663m.g' => 'esa', 'Thhalv10009506m.g' => 'esa', 'Thhalv10017549m.g' => 'esa', 'Thhalv10017552m.g' => 'esa', 'Thhalv10017670m.g' => 'esa', 'TPR.G33694' => 'tpr', 'TWI12G0489' => 'twi', 'TWI14G0093' => 'twi', 'TWI56G0614' => 'twi', 'TWI74G1357' => 'twi', 'unitig_578.g16147' => 'ugi', 'unitig_8.g4879' => 'ugi', 'vmacro01963' => 'vma', 'vmacro21437' => 'vma', 'VMungo0540G1757' => 'vmu', 'VMungo0647G0922' => 'vmu', 'VMungo1309G1787' => 'vmu', 'Zm00001eb020780' => 'zma', 'Zm00001eb108170' => 'zma', 'Zm00001eb326080' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002133', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002133' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002133', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '314', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002133' ) ), 'genes' => array( 'A07p11580' => 'bna', 'A08p26060' => 'bna', 'A09p38330' => 'bna', 'Aa31sc113G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.183' => 'aag', 'Actinidia00373' => 'ach', 'Actinidia00374' => 'ach', 'Actinidia10193' => 'ach', 'Actinidia22690' => 'ach', 'Actinidia38102' => 'ach', 'Ah.11g039780' => 'amhyb', 'AL1G41310' => 'aly', 'Aqoxy1G02357' => 'aox', 'Aqoxy1G02406' => 'aox', 'Aqoxy1G02502' => 'aox', 'Aqoxy1G02669' => 'aox', 'Aqoxy1G02887' => 'aox', 'Aqoxy1G03040' => 'aox', 'Aqoxy2G02320' => 'aox', 'Aqoxy5G00879' => 'aox', 'Aqoxy5G03178' => 'aox', 'Aqoxy5G03179' => 'aox', 'Aqoxy6G02657' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MR8KE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60DR5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68HS6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZRQ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0RFJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C26UD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CH195H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFKR07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXTN9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VTP83K' => 'arhy', 'AT1G27760' => 'ath', 'ATR0208G038' => 'atr', 'Atru.chr13.822' => 'acertr', 'AUR62022485' => 'cqu', 'AUR62037427' => 'cqu', 'BcaB03g13968' => 'bca', 'BcaB08g34833' => 'bca', 'BcaC01g01568' => 'bca', 'BcaC01g01569' => 'bca', 'BcaC01g01570' => 'bca', 'BcaC05g26776' => 'bca', 'BcaC06g35320' => 'bca', 'BcaNung06154' => 'bca', 'BolC3t19708H' => 'bol', 'BolC5t31367H' => 'bol', 'BolC7t42251H' => 'bol', 'BraA07t28946Z' => 'bra', 'BraA08t34556Z' => 'bra', 'BraA09t39343Z' => 'bra', 'C03p74600' => 'bna', 'C05p26460' => 'bna', 'C07p17460' => 'bna', 'CAN.G107.49' => 'can', 'CAN.G504.35' => 'can', 'CAN.G724.13' => 'can', 'CANSAT25G1442' => 'cansat', 'CANSAT80G1456' => 'cansat', 'CARHR027280' => 'chi', 'Carub.0001s2628' => 'cru', 'Ca_15902_v3' => 'car', 'CBR_g3782' => 'cbr', 'Cc10_g05710' => 'ccan', 'CDE02G2866' => 'cde', 'CDE04G2518' => 'cde', 'Ciclev10001181m.g' => 'ccl', 'CiPaw.07G175700' => 'cil', 'CiPaw.08G049800' => 'cil', 'ClCG05G020570' => 'cla', 'COL.COLO4_28515' => 'col', 'Cpa.g.sc142.18' => 'cpa', 'Cre03.g202500' => 'cre', 'CsaV3_4G035010' => 'csa', 'CSS0013335' => 'camsi', 'CSS0015739' => 'camsi', 'CSS0028243' => 'camsi', 'CSS0038052' => 'camsi', 'DCAR_009883' => 'dca', 'DCAR_013721' => 'dca', 'DCAR_016840' => 'dca', 'DCAR_020073' => 'dca', 'Dinv04580' => 'din', 'Dinv39230' => 'din', 'Dinv44960' => 'din', 'Duzib041G0730' => 'dzi', 'Duzib052G0091' => 'dzi', 'Duzib093G0932' => 'dzi', 'Duzib116G0883' => 'dzi', 'ECA232G3220' => 'eca', 'ECA246G3335' => 'eca', 'EL10Ac1g02389' => 'bvu', 'Eucgr.F02256' => 'egr', 'Eucgr.I01064' => 'egr', 'FAN04G0376' => 'fan', 'FAN15G1432' => 'fan', 'FAN15G1988' => 'fan', 'FAN15G2993' => 'fan', 'FAN18G1869' => 'fan', 'FAN19G2748' => 'fan', 'FAN20G1995' => 'fan', 'FAN20G2377' => 'fan', 'FAN20G3115' => 'fan', 'FAN24G1433' => 'fan', 'FAN24G2013' => 'fan', 'FAN24G2138' => 'fan', 'FAN24G2512' => 'fan', 'FAN26G1173' => 'fan', 'FAN26G3182' => 'fan', 'FAN27G0263' => 'fan', 'FAN27G1056' => 'fan', 'FAN27G1207' => 'fan', 'FAN27G1338' => 'fan', 'FvH4_1g08070' => 'fve', 'FvH4_2g04330' => 'fve', 'FvH4_2g32270' => 'fve', 'FvH4_2g33200' => 'fve', 'FvH4_5g33120' => 'fve', 'Glyma.04G045600' => 'gma', 'Glyma.06G046300' => 'gma', 'Glyma.14G089009' => 'gma', 'Glyma.17G235100' => 'gma', 'Gohir.A02G017701' => 'ghi', 'Gohir.A02G081200' => 'ghi', 'Gohir.A05G209400' => 'ghi', 'Gohir.A05G263101' => 'ghi', 'Gohir.A06G111004' => 'ghi', 'Gohir.A07G032566' => 'ghi', 'Gohir.A07G129601' => 'ghi', 'Gohir.A07G155050' => 'ghi', 'Gohir.A09G170450' => 'ghi', 'Gohir.A10G175251' => 'ghi', 'Gohir.A13G046500' => 'ghi', 'Gohir.A13G189950' => 'ghi', 'Gohir.D02G088900' => 'ghi', 'Gohir.D03G104750' => 'ghi', 'Gohir.D04G071950' => 'ghi', 'Gohir.D05G212800' => 'ghi', 'Gohir.D05G265300' => 'ghi', 'Gohir.D07G033450' => 'ghi', 'Gohir.D08G111408' => 'ghi', 'Gohir.D10G122550' => 'ghi', 'Gohir.D13G042500' => 'ghi', 'Gorai.003G110700' => 'gra', 'Gorai.005G099600' => 'gra', 'Gorai.007G097500' => 'gra', 'Gorai.009G219300' => 'gra', 'Gorai.009G277100' => 'gra', 'Gorai.011G135000' => 'gra', 'Gorai.013G050400' => 'gra', 'GSVIVG01009354001' => 'vvi', 'GSVIVG01009839001' => 'vvi', 'GSVIVG01037843001' => 'vvi', 'HanXRQChr01g0027951' => 'han', 'HanXRQChr06g0175321' => 'han', 'HanXRQChr09g0266701' => 'han', 'Haze_22448' => 'cav', 'Hma1.2p1_0819F.1_g223760' => 'hma', 'Hma1.2p1_1059F.1_g252940' => 'hma', 'HPP92_009539' => 'vpl', 'Hund24035' => 'sun', 'Lalb_Chr02g0144991' => 'lal', 'Lalb_Chr08g0245541' => 'lal', 'Lalb_Chr22g0355651' => 'lal', 'Lalb_Chr23g0267501' => 'lal', 'Lj1g0026971' => 'lja', 'Lj4A70G38' => 'lonja', 'Lj4A759T44' => 'lonja', 'Lj4A759T45' => 'lonja', 'Lj5A219T39' => 'lonja', 'Lj5g0009817' => 'lja', 'Lsat_1_v5_gn_3_33441' => 'lsa', 'Lsat_1_v5_gn_4_131141' => 'lsa', 'Lsat_1_v5_gn_4_93941' => 'lsa', 'Lsat_1_v5_gn_6_112361' => 'lsa', 'Lsat_1_v5_gn_6_23981' => 'lsa', 'Manes.05G181400' => 'mes', 'Manes.18G045800' => 'mes', 'Mapoly0071s0061' => 'mpo', 'MBI16_g01178_MAGBIO' => 'mbi', 'MBI16_g01179_MAGBIO' => 'mbi', 'MBI16_g01180_MAGBIO' => 'mbi', 'MBI18_g24148_MAGBIO' => 'mbi', 'MD00G1169900' => 'mdo', 'MD00G1170100' => 'mdo', 'MD08G1085400' => 'mdo', 'MD08G1085500' => 'mdo', 'MD08G1085800' => 'mdo', 'MD10G1105600' => 'mdo', 'MD10G1151100' => 'mdo', 'MD15G1071000' => 'mdo', 'Medtr3g103090' => 'mtr', 'MELO3C016813.2' => 'cme', 'Migut.N01141' => 'egut', 'Migut.N02776' => 'egut', 'MSTRG.22223' => 'ama', 'MSTRG.24371' => 'ama', 'MSTRG.27763' => 'ama', 'Nitab4.5_0000068g0520' => 'nta', 'Nitab4.5_0000164g0130' => 'nta', 'Nitab4.5_0000569g0190' => 'nta', 'Nitab4.5_0001298g0040' => 'nta', 'Nitab4.5_0002314g0110' => 'nta', 'Nitab4.5_0002968g0020' => 'nta', 'Nitab4.5_0003803g0030' => 'nta', 'Nitab4.5_0005301g0030' => 'nta', 'Nn1g03720' => 'nnu', 'Nn1g04581' => 'nnu', 'Nn2g15136' => 'nnu', 'Nn5g30562' => 'nnu', 'Nn8g39787' => 'nnu', 'Oeu037279.1' => 'oeu', 'Oeu037500.1' => 'oeu', 'Oeu048578.1' => 'oeu', 'Os02g0219000' => 'osa', 'Os02g0219050' => 'osa', 'Os03g0448700' => 'osa', 'Os07g0588000' => 'osa', 'Os08g0491400' => 'osa', 'Peaxi162Scf00003g04822' => 'pax', 'Peaxi162Scf00017g02838' => 'pax', 'Peaxi162Scf00081g01710' => 'pax', 'Peaxi162Scf00102g01358' => 'pax', 'Peaxi162Scf00179g00010' => 'pax', 'Peaxi162Scf00179g00011' => 'pax', 'Peaxi162Scf00267g00614' => 'pax', 'PGR031G1293' => 'pgr', 'PGR120G0002' => 'pgr', 'PGR142G2399' => 'pgr', 'PGSC0003DMG400010671' => 'stu', 'PGSC0003DMG400011546' => 'stu', 'PGSC0003DMG400021507' => 'stu', 'Phvul.001G027600' => 'pvu', 'Phvul.009G071500' => 'pvu', 'Potri.002G119100' => 'ptr', 'Potri.009G088700' => 'ptr', 'Potri.014G016800' => 'ptr', 'Pp3c11_19710' => 'ppa', 'Pp3c20_9970' => 'ppa', 'Pp3c23_4310' => 'ppa', 'Prupe.1G423700' => 'ppe', 'Prupe.3G276000' => 'ppe', 'Prupe.8G144400' => 'ppe', 'Psat5g039040' => 'psa', 'PSO017G4718' => 'pso', 'PSO170G0233' => 'pso', 'PSO541G1264' => 'pso', 'PSO675G0857' => 'pso', 'PSO675G6693' => 'pso', 'QL12p037925' => 'qlo', 'RcHm_v2.0_Chr2g0094131' => 'rch', 'RcHm_v2.0_Chr6g0253771' => 'rch', 'RcHm_v2.0_Chr6g0309471' => 'rch', 'Rhsim06G0061800' => 'rsi', 'Rhsim11G0151300' => 'rsi', 'Rhsim11G0151500' => 'rsi', 'Rhsim11G0152900' => 'rsi', 'Sabra02G0093600' => 'sbr', 'SalBow7G0136' => 'sbo', 'Sc15g0003510' => 'sci', 'Sed0019340' => 'sed', 'SGA_v2.0_scaffold219G42529' => 'sas', 'SGA_v2.0_scaffold28G11825' => 'sas', 'SMO141G0038' => 'smo', 'SMO174G0013' => 'smo', 'SMO174G0098' => 'smo', 'SMO174G0244' => 'smo', 'SMO296G0017' => 'smo', 'SMO296G0027' => 'smo', 'SMO296G0038' => 'smo', 'SMO296G0039' => 'smo', 'SMO353G0413' => 'smo', 'Solyc01g106150.1' => 'sly', 'Solyc04g077920.3' => 'sly', 'Solyc12g088370.2' => 'sly', 'Sopen00g013750' => 'spe', 'Sopen01g048530' => 'spe', 'Sopen04g031520' => 'spe', 'Sopen12g030350' => 'spe', 'Sp1g24010' => 'spa', 'TAR376G0191' => 'tar', 'TAR376G1139' => 'tar', 'TAR381G1089' => 'tar', 'TAR625G0071' => 'tar', 'TAR628G0276' => 'tar', 'TAR628G1204' => 'tar', 'THA.LOC104814188' => 'tha', 'THA.LOC104820516' => 'tha', 'Thecc.02G114600' => 'tca', 'Thecc.02G116500' => 'tca', 'Thecc.08G089800' => 'tca', 'Thhalv10001793m.g' => 'esa', 'Thhalv10007663m.g' => 'esa', 'Thhalv10009506m.g' => 'esa', 'Thhalv10017549m.g' => 'esa', 'Thhalv10017552m.g' => 'esa', 'Thhalv10017670m.g' => 'esa', 'TPR.G33694' => 'tpr', 'TWI12G0489' => 'twi', 'TWI14G0093' => 'twi', 'TWI56G0614' => 'twi', 'TWI74G1357' => 'twi', 'unitig_578.g16147' => 'ugi', 'unitig_8.g4879' => 'ugi', 'vmacro01963' => 'vma', 'vmacro21437' => 'vma', 'VMungo0540G1757' => 'vmu', 'VMungo0647G0922' => 'vmu', 'VMungo1309G1787' => 'vmu', 'Zm00001eb020780' => 'zma', 'Zm00001eb108170' => 'zma', 'Zm00001eb326080' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002133' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002133' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002133' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002133' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002133', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '314', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A07p11580' => 'bna', 'A08p26060' => 'bna', 'A09p38330' => 'bna', 'Aa31sc113G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.183' => 'aag', 'Actinidia00373' => 'ach', 'Actinidia00374' => 'ach', 'Actinidia10193' => 'ach', 'Actinidia22690' => 'ach', 'Actinidia38102' => 'ach', 'Ah.11g039780' => 'amhyb', 'AL1G41310' => 'aly', 'Aqoxy1G02357' => 'aox', 'Aqoxy1G02406' => 'aox', 'Aqoxy1G02502' => 'aox', 'Aqoxy1G02669' => 'aox', 'Aqoxy1G02887' => 'aox', 'Aqoxy1G03040' => 'aox', 'Aqoxy2G02320' => 'aox', 'Aqoxy5G00879' => 'aox', 'Aqoxy5G03178' => 'aox', 'Aqoxy5G03179' => 'aox', 'Aqoxy6G02657' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MR8KE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60DR5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68HS6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZRQ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0RFJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C26UD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CH195H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFKR07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXTN9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VTP83K' => 'arhy', 'AT1G27760' => 'ath', 'ATR0208G038' => 'atr', 'Atru.chr13.822' => 'acertr', 'AUR62022485' => 'cqu', 'AUR62037427' => 'cqu', 'BcaB03g13968' => 'bca', 'BcaB08g34833' => 'bca', 'BcaC01g01568' => 'bca', 'BcaC01g01569' => 'bca', 'BcaC01g01570' => 'bca', 'BcaC05g26776' => 'bca', 'BcaC06g35320' => 'bca', 'BcaNung06154' => 'bca', 'BolC3t19708H' => 'bol', 'BolC5t31367H' => 'bol', 'BolC7t42251H' => 'bol', 'BraA07t28946Z' => 'bra', 'BraA08t34556Z' => 'bra', 'BraA09t39343Z' => 'bra', 'C03p74600' => 'bna', 'C05p26460' => 'bna', 'C07p17460' => 'bna', 'CAN.G107.49' => 'can', 'CAN.G504.35' => 'can', 'CAN.G724.13' => 'can', 'CANSAT25G1442' => 'cansat', 'CANSAT80G1456' => 'cansat', 'CARHR027280' => 'chi', 'Carub.0001s2628' => 'cru', 'Ca_15902_v3' => 'car', 'CBR_g3782' => 'cbr', 'Cc10_g05710' => 'ccan', 'CDE02G2866' => 'cde', 'CDE04G2518' => 'cde', 'Ciclev10001181m.g' => 'ccl', 'CiPaw.07G175700' => 'cil', 'CiPaw.08G049800' => 'cil', 'ClCG05G020570' => 'cla', 'COL.COLO4_28515' => 'col', 'Cpa.g.sc142.18' => 'cpa', 'Cre03.g202500' => 'cre', 'CsaV3_4G035010' => 'csa', 'CSS0013335' => 'camsi', 'CSS0015739' => 'camsi', 'CSS0028243' => 'camsi', 'CSS0038052' => 'camsi', 'DCAR_009883' => 'dca', 'DCAR_013721' => 'dca', 'DCAR_016840' => 'dca', 'DCAR_020073' => 'dca', 'Dinv04580' => 'din', 'Dinv39230' => 'din', 'Dinv44960' => 'din', 'Duzib041G0730' => 'dzi', 'Duzib052G0091' => 'dzi', 'Duzib093G0932' => 'dzi', 'Duzib116G0883' => 'dzi', 'ECA232G3220' => 'eca', 'ECA246G3335' => 'eca', 'EL10Ac1g02389' => 'bvu', 'Eucgr.F02256' => 'egr', 'Eucgr.I01064' => 'egr', 'FAN04G0376' => 'fan', 'FAN15G1432' => 'fan', 'FAN15G1988' => 'fan', 'FAN15G2993' => 'fan', 'FAN18G1869' => 'fan', 'FAN19G2748' => 'fan', 'FAN20G1995' => 'fan', 'FAN20G2377' => 'fan', 'FAN20G3115' => 'fan', 'FAN24G1433' => 'fan', 'FAN24G2013' => 'fan', 'FAN24G2138' => 'fan', 'FAN24G2512' => 'fan', 'FAN26G1173' => 'fan', 'FAN26G3182' => 'fan', 'FAN27G0263' => 'fan', 'FAN27G1056' => 'fan', 'FAN27G1207' => 'fan', 'FAN27G1338' => 'fan', 'FvH4_1g08070' => 'fve', 'FvH4_2g04330' => 'fve', 'FvH4_2g32270' => 'fve', 'FvH4_2g33200' => 'fve', 'FvH4_5g33120' => 'fve', 'Glyma.04G045600' => 'gma', 'Glyma.06G046300' => 'gma', 'Glyma.14G089009' => 'gma', 'Glyma.17G235100' => 'gma', 'Gohir.A02G017701' => 'ghi', 'Gohir.A02G081200' => 'ghi', 'Gohir.A05G209400' => 'ghi', 'Gohir.A05G263101' => 'ghi', 'Gohir.A06G111004' => 'ghi', 'Gohir.A07G032566' => 'ghi', 'Gohir.A07G129601' => 'ghi', 'Gohir.A07G155050' => 'ghi', 'Gohir.A09G170450' => 'ghi', 'Gohir.A10G175251' => 'ghi', 'Gohir.A13G046500' => 'ghi', 'Gohir.A13G189950' => 'ghi', 'Gohir.D02G088900' => 'ghi', 'Gohir.D03G104750' => 'ghi', 'Gohir.D04G071950' => 'ghi', 'Gohir.D05G212800' => 'ghi', 'Gohir.D05G265300' => 'ghi', 'Gohir.D07G033450' => 'ghi', 'Gohir.D08G111408' => 'ghi', 'Gohir.D10G122550' => 'ghi', 'Gohir.D13G042500' => 'ghi', 'Gorai.003G110700' => 'gra', 'Gorai.005G099600' => 'gra', 'Gorai.007G097500' => 'gra', 'Gorai.009G219300' => 'gra', 'Gorai.009G277100' => 'gra', 'Gorai.011G135000' => 'gra', 'Gorai.013G050400' => 'gra', 'GSVIVG01009354001' => 'vvi', 'GSVIVG01009839001' => 'vvi', 'GSVIVG01037843001' => 'vvi', 'HanXRQChr01g0027951' => 'han', 'HanXRQChr06g0175321' => 'han', 'HanXRQChr09g0266701' => 'han', 'Haze_22448' => 'cav', 'Hma1.2p1_0819F.1_g223760' => 'hma', 'Hma1.2p1_1059F.1_g252940' => 'hma', 'HPP92_009539' => 'vpl', 'Hund24035' => 'sun', 'Lalb_Chr02g0144991' => 'lal', 'Lalb_Chr08g0245541' => 'lal', 'Lalb_Chr22g0355651' => 'lal', 'Lalb_Chr23g0267501' => 'lal', 'Lj1g0026971' => 'lja', 'Lj4A70G38' => 'lonja', 'Lj4A759T44' => 'lonja', 'Lj4A759T45' => 'lonja', 'Lj5A219T39' => 'lonja', 'Lj5g0009817' => 'lja', 'Lsat_1_v5_gn_3_33441' => 'lsa', 'Lsat_1_v5_gn_4_131141' => 'lsa', 'Lsat_1_v5_gn_4_93941' => 'lsa', 'Lsat_1_v5_gn_6_112361' => 'lsa', 'Lsat_1_v5_gn_6_23981' => 'lsa', 'Manes.05G181400' => 'mes', 'Manes.18G045800' => 'mes', 'Mapoly0071s0061' => 'mpo', 'MBI16_g01178_MAGBIO' => 'mbi', 'MBI16_g01179_MAGBIO' => 'mbi', 'MBI16_g01180_MAGBIO' => 'mbi', 'MBI18_g24148_MAGBIO' => 'mbi', 'MD00G1169900' => 'mdo', 'MD00G1170100' => 'mdo', 'MD08G1085400' => 'mdo', 'MD08G1085500' => 'mdo', 'MD08G1085800' => 'mdo', 'MD10G1105600' => 'mdo', 'MD10G1151100' => 'mdo', 'MD15G1071000' => 'mdo', 'Medtr3g103090' => 'mtr', 'MELO3C016813.2' => 'cme', 'Migut.N01141' => 'egut', 'Migut.N02776' => 'egut', 'MSTRG.22223' => 'ama', 'MSTRG.24371' => 'ama', 'MSTRG.27763' => 'ama', 'Nitab4.5_0000068g0520' => 'nta', 'Nitab4.5_0000164g0130' => 'nta', 'Nitab4.5_0000569g0190' => 'nta', 'Nitab4.5_0001298g0040' => 'nta', 'Nitab4.5_0002314g0110' => 'nta', 'Nitab4.5_0002968g0020' => 'nta', 'Nitab4.5_0003803g0030' => 'nta', 'Nitab4.5_0005301g0030' => 'nta', 'Nn1g03720' => 'nnu', 'Nn1g04581' => 'nnu', 'Nn2g15136' => 'nnu', 'Nn5g30562' => 'nnu', 'Nn8g39787' => 'nnu', 'Oeu037279.1' => 'oeu', 'Oeu037500.1' => 'oeu', 'Oeu048578.1' => 'oeu', 'Os02g0219000' => 'osa', 'Os02g0219050' => 'osa', 'Os03g0448700' => 'osa', 'Os07g0588000' => 'osa', 'Os08g0491400' => 'osa', 'Peaxi162Scf00003g04822' => 'pax', 'Peaxi162Scf00017g02838' => 'pax', 'Peaxi162Scf00081g01710' => 'pax', 'Peaxi162Scf00102g01358' => 'pax', 'Peaxi162Scf00179g00010' => 'pax', 'Peaxi162Scf00179g00011' => 'pax', 'Peaxi162Scf00267g00614' => 'pax', 'PGR031G1293' => 'pgr', 'PGR120G0002' => 'pgr', 'PGR142G2399' => 'pgr', 'PGSC0003DMG400010671' => 'stu', 'PGSC0003DMG400011546' => 'stu', 'PGSC0003DMG400021507' => 'stu', 'Phvul.001G027600' => 'pvu', 'Phvul.009G071500' => 'pvu', 'Potri.002G119100' => 'ptr', 'Potri.009G088700' => 'ptr', 'Potri.014G016800' => 'ptr', 'Pp3c11_19710' => 'ppa', 'Pp3c20_9970' => 'ppa', 'Pp3c23_4310' => 'ppa', 'Prupe.1G423700' => 'ppe', 'Prupe.3G276000' => 'ppe', 'Prupe.8G144400' => 'ppe', 'Psat5g039040' => 'psa', 'PSO017G4718' => 'pso', 'PSO170G0233' => 'pso', 'PSO541G1264' => 'pso', 'PSO675G0857' => 'pso', 'PSO675G6693' => 'pso', 'QL12p037925' => 'qlo', 'RcHm_v2.0_Chr2g0094131' => 'rch', 'RcHm_v2.0_Chr6g0253771' => 'rch', 'RcHm_v2.0_Chr6g0309471' => 'rch', 'Rhsim06G0061800' => 'rsi', 'Rhsim11G0151300' => 'rsi', 'Rhsim11G0151500' => 'rsi', 'Rhsim11G0152900' => 'rsi', 'Sabra02G0093600' => 'sbr', 'SalBow7G0136' => 'sbo', 'Sc15g0003510' => 'sci', 'Sed0019340' => 'sed', 'SGA_v2.0_scaffold219G42529' => 'sas', 'SGA_v2.0_scaffold28G11825' => 'sas', 'SMO141G0038' => 'smo', 'SMO174G0013' => 'smo', 'SMO174G0098' => 'smo', 'SMO174G0244' => 'smo', 'SMO296G0017' => 'smo', 'SMO296G0027' => 'smo', 'SMO296G0038' => 'smo', 'SMO296G0039' => 'smo', 'SMO353G0413' => 'smo', 'Solyc01g106150.1' => 'sly', 'Solyc04g077920.3' => 'sly', 'Solyc12g088370.2' => 'sly', 'Sopen00g013750' => 'spe', 'Sopen01g048530' => 'spe', 'Sopen04g031520' => 'spe', 'Sopen12g030350' => 'spe', 'Sp1g24010' => 'spa', 'TAR376G0191' => 'tar', 'TAR376G1139' => 'tar', 'TAR381G1089' => 'tar', 'TAR625G0071' => 'tar', 'TAR628G0276' => 'tar', 'TAR628G1204' => 'tar', 'THA.LOC104814188' => 'tha', 'THA.LOC104820516' => 'tha', 'Thecc.02G114600' => 'tca', 'Thecc.02G116500' => 'tca', 'Thecc.08G089800' => 'tca', 'Thhalv10001793m.g' => 'esa', 'Thhalv10007663m.g' => 'esa', 'Thhalv10009506m.g' => 'esa', 'Thhalv10017549m.g' => 'esa', 'Thhalv10017552m.g' => 'esa', 'Thhalv10017670m.g' => 'esa', 'TPR.G33694' => 'tpr', 'TWI12G0489' => 'twi', 'TWI14G0093' => 'twi', 'TWI56G0614' => 'twi', 'TWI74G1357' => 'twi', 'unitig_578.g16147' => 'ugi', 'unitig_8.g4879' => 'ugi', 'vmacro01963' => 'vma', 'vmacro21437' => 'vma', 'VMungo0540G1757' => 'vmu', 'VMungo0647G0922' => 'vmu', 'VMungo1309G1787' => 'vmu', 'Zm00001eb020780' => 'zma', 'Zm00001eb108170' => 'zma', 'Zm00001eb326080' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002133', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002133' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002133', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '314', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002133' ) ), 'genes' => array( 'A07p11580' => 'bna', 'A08p26060' => 'bna', 'A09p38330' => 'bna', 'Aa31sc113G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.183' => 'aag', 'Actinidia00373' => 'ach', 'Actinidia00374' => 'ach', 'Actinidia10193' => 'ach', 'Actinidia22690' => 'ach', 'Actinidia38102' => 'ach', 'Ah.11g039780' => 'amhyb', 'AL1G41310' => 'aly', 'Aqoxy1G02357' => 'aox', 'Aqoxy1G02406' => 'aox', 'Aqoxy1G02502' => 'aox', 'Aqoxy1G02669' => 'aox', 'Aqoxy1G02887' => 'aox', 'Aqoxy1G03040' => 'aox', 'Aqoxy2G02320' => 'aox', 'Aqoxy5G00879' => 'aox', 'Aqoxy5G03178' => 'aox', 'Aqoxy5G03179' => 'aox', 'Aqoxy6G02657' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MR8KE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60DR5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68HS6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZRQ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0RFJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C26UD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CH195H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFKR07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXTN9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VTP83K' => 'arhy', 'AT1G27760' => 'ath', 'ATR0208G038' => 'atr', 'Atru.chr13.822' => 'acertr', 'AUR62022485' => 'cqu', 'AUR62037427' => 'cqu', 'BcaB03g13968' => 'bca', 'BcaB08g34833' => 'bca', 'BcaC01g01568' => 'bca', 'BcaC01g01569' => 'bca', 'BcaC01g01570' => 'bca', 'BcaC05g26776' => 'bca', 'BcaC06g35320' => 'bca', 'BcaNung06154' => 'bca', 'BolC3t19708H' => 'bol', 'BolC5t31367H' => 'bol', 'BolC7t42251H' => 'bol', 'BraA07t28946Z' => 'bra', 'BraA08t34556Z' => 'bra', 'BraA09t39343Z' => 'bra', 'C03p74600' => 'bna', 'C05p26460' => 'bna', 'C07p17460' => 'bna', 'CAN.G107.49' => 'can', 'CAN.G504.35' => 'can', 'CAN.G724.13' => 'can', 'CANSAT25G1442' => 'cansat', 'CANSAT80G1456' => 'cansat', 'CARHR027280' => 'chi', 'Carub.0001s2628' => 'cru', 'Ca_15902_v3' => 'car', 'CBR_g3782' => 'cbr', 'Cc10_g05710' => 'ccan', 'CDE02G2866' => 'cde', 'CDE04G2518' => 'cde', 'Ciclev10001181m.g' => 'ccl', 'CiPaw.07G175700' => 'cil', 'CiPaw.08G049800' => 'cil', 'ClCG05G020570' => 'cla', 'COL.COLO4_28515' => 'col', 'Cpa.g.sc142.18' => 'cpa', 'Cre03.g202500' => 'cre', 'CsaV3_4G035010' => 'csa', 'CSS0013335' => 'camsi', 'CSS0015739' => 'camsi', 'CSS0028243' => 'camsi', 'CSS0038052' => 'camsi', 'DCAR_009883' => 'dca', 'DCAR_013721' => 'dca', 'DCAR_016840' => 'dca', 'DCAR_020073' => 'dca', 'Dinv04580' => 'din', 'Dinv39230' => 'din', 'Dinv44960' => 'din', 'Duzib041G0730' => 'dzi', 'Duzib052G0091' => 'dzi', 'Duzib093G0932' => 'dzi', 'Duzib116G0883' => 'dzi', 'ECA232G3220' => 'eca', 'ECA246G3335' => 'eca', 'EL10Ac1g02389' => 'bvu', 'Eucgr.F02256' => 'egr', 'Eucgr.I01064' => 'egr', 'FAN04G0376' => 'fan', 'FAN15G1432' => 'fan', 'FAN15G1988' => 'fan', 'FAN15G2993' => 'fan', 'FAN18G1869' => 'fan', 'FAN19G2748' => 'fan', 'FAN20G1995' => 'fan', 'FAN20G2377' => 'fan', 'FAN20G3115' => 'fan', 'FAN24G1433' => 'fan', 'FAN24G2013' => 'fan', 'FAN24G2138' => 'fan', 'FAN24G2512' => 'fan', 'FAN26G1173' => 'fan', 'FAN26G3182' => 'fan', 'FAN27G0263' => 'fan', 'FAN27G1056' => 'fan', 'FAN27G1207' => 'fan', 'FAN27G1338' => 'fan', 'FvH4_1g08070' => 'fve', 'FvH4_2g04330' => 'fve', 'FvH4_2g32270' => 'fve', 'FvH4_2g33200' => 'fve', 'FvH4_5g33120' => 'fve', 'Glyma.04G045600' => 'gma', 'Glyma.06G046300' => 'gma', 'Glyma.14G089009' => 'gma', 'Glyma.17G235100' => 'gma', 'Gohir.A02G017701' => 'ghi', 'Gohir.A02G081200' => 'ghi', 'Gohir.A05G209400' => 'ghi', 'Gohir.A05G263101' => 'ghi', 'Gohir.A06G111004' => 'ghi', 'Gohir.A07G032566' => 'ghi', 'Gohir.A07G129601' => 'ghi', 'Gohir.A07G155050' => 'ghi', 'Gohir.A09G170450' => 'ghi', 'Gohir.A10G175251' => 'ghi', 'Gohir.A13G046500' => 'ghi', 'Gohir.A13G189950' => 'ghi', 'Gohir.D02G088900' => 'ghi', 'Gohir.D03G104750' => 'ghi', 'Gohir.D04G071950' => 'ghi', 'Gohir.D05G212800' => 'ghi', 'Gohir.D05G265300' => 'ghi', 'Gohir.D07G033450' => 'ghi', 'Gohir.D08G111408' => 'ghi', 'Gohir.D10G122550' => 'ghi', 'Gohir.D13G042500' => 'ghi', 'Gorai.003G110700' => 'gra', 'Gorai.005G099600' => 'gra', 'Gorai.007G097500' => 'gra', 'Gorai.009G219300' => 'gra', 'Gorai.009G277100' => 'gra', 'Gorai.011G135000' => 'gra', 'Gorai.013G050400' => 'gra', 'GSVIVG01009354001' => 'vvi', 'GSVIVG01009839001' => 'vvi', 'GSVIVG01037843001' => 'vvi', 'HanXRQChr01g0027951' => 'han', 'HanXRQChr06g0175321' => 'han', 'HanXRQChr09g0266701' => 'han', 'Haze_22448' => 'cav', 'Hma1.2p1_0819F.1_g223760' => 'hma', 'Hma1.2p1_1059F.1_g252940' => 'hma', 'HPP92_009539' => 'vpl', 'Hund24035' => 'sun', 'Lalb_Chr02g0144991' => 'lal', 'Lalb_Chr08g0245541' => 'lal', 'Lalb_Chr22g0355651' => 'lal', 'Lalb_Chr23g0267501' => 'lal', 'Lj1g0026971' => 'lja', 'Lj4A70G38' => 'lonja', 'Lj4A759T44' => 'lonja', 'Lj4A759T45' => 'lonja', 'Lj5A219T39' => 'lonja', 'Lj5g0009817' => 'lja', 'Lsat_1_v5_gn_3_33441' => 'lsa', 'Lsat_1_v5_gn_4_131141' => 'lsa', 'Lsat_1_v5_gn_4_93941' => 'lsa', 'Lsat_1_v5_gn_6_112361' => 'lsa', 'Lsat_1_v5_gn_6_23981' => 'lsa', 'Manes.05G181400' => 'mes', 'Manes.18G045800' => 'mes', 'Mapoly0071s0061' => 'mpo', 'MBI16_g01178_MAGBIO' => 'mbi', 'MBI16_g01179_MAGBIO' => 'mbi', 'MBI16_g01180_MAGBIO' => 'mbi', 'MBI18_g24148_MAGBIO' => 'mbi', 'MD00G1169900' => 'mdo', 'MD00G1170100' => 'mdo', 'MD08G1085400' => 'mdo', 'MD08G1085500' => 'mdo', 'MD08G1085800' => 'mdo', 'MD10G1105600' => 'mdo', 'MD10G1151100' => 'mdo', 'MD15G1071000' => 'mdo', 'Medtr3g103090' => 'mtr', 'MELO3C016813.2' => 'cme', 'Migut.N01141' => 'egut', 'Migut.N02776' => 'egut', 'MSTRG.22223' => 'ama', 'MSTRG.24371' => 'ama', 'MSTRG.27763' => 'ama', 'Nitab4.5_0000068g0520' => 'nta', 'Nitab4.5_0000164g0130' => 'nta', 'Nitab4.5_0000569g0190' => 'nta', 'Nitab4.5_0001298g0040' => 'nta', 'Nitab4.5_0002314g0110' => 'nta', 'Nitab4.5_0002968g0020' => 'nta', 'Nitab4.5_0003803g0030' => 'nta', 'Nitab4.5_0005301g0030' => 'nta', 'Nn1g03720' => 'nnu', 'Nn1g04581' => 'nnu', 'Nn2g15136' => 'nnu', 'Nn5g30562' => 'nnu', 'Nn8g39787' => 'nnu', 'Oeu037279.1' => 'oeu', 'Oeu037500.1' => 'oeu', 'Oeu048578.1' => 'oeu', 'Os02g0219000' => 'osa', 'Os02g0219050' => 'osa', 'Os03g0448700' => 'osa', 'Os07g0588000' => 'osa', 'Os08g0491400' => 'osa', 'Peaxi162Scf00003g04822' => 'pax', 'Peaxi162Scf00017g02838' => 'pax', 'Peaxi162Scf00081g01710' => 'pax', 'Peaxi162Scf00102g01358' => 'pax', 'Peaxi162Scf00179g00010' => 'pax', 'Peaxi162Scf00179g00011' => 'pax', 'Peaxi162Scf00267g00614' => 'pax', 'PGR031G1293' => 'pgr', 'PGR120G0002' => 'pgr', 'PGR142G2399' => 'pgr', 'PGSC0003DMG400010671' => 'stu', 'PGSC0003DMG400011546' => 'stu', 'PGSC0003DMG400021507' => 'stu', 'Phvul.001G027600' => 'pvu', 'Phvul.009G071500' => 'pvu', 'Potri.002G119100' => 'ptr', 'Potri.009G088700' => 'ptr', 'Potri.014G016800' => 'ptr', 'Pp3c11_19710' => 'ppa', 'Pp3c20_9970' => 'ppa', 'Pp3c23_4310' => 'ppa', 'Prupe.1G423700' => 'ppe', 'Prupe.3G276000' => 'ppe', 'Prupe.8G144400' => 'ppe', 'Psat5g039040' => 'psa', 'PSO017G4718' => 'pso', 'PSO170G0233' => 'pso', 'PSO541G1264' => 'pso', 'PSO675G0857' => 'pso', 'PSO675G6693' => 'pso', 'QL12p037925' => 'qlo', 'RcHm_v2.0_Chr2g0094131' => 'rch', 'RcHm_v2.0_Chr6g0253771' => 'rch', 'RcHm_v2.0_Chr6g0309471' => 'rch', 'Rhsim06G0061800' => 'rsi', 'Rhsim11G0151300' => 'rsi', 'Rhsim11G0151500' => 'rsi', 'Rhsim11G0152900' => 'rsi', 'Sabra02G0093600' => 'sbr', 'SalBow7G0136' => 'sbo', 'Sc15g0003510' => 'sci', 'Sed0019340' => 'sed', 'SGA_v2.0_scaffold219G42529' => 'sas', 'SGA_v2.0_scaffold28G11825' => 'sas', 'SMO141G0038' => 'smo', 'SMO174G0013' => 'smo', 'SMO174G0098' => 'smo', 'SMO174G0244' => 'smo', 'SMO296G0017' => 'smo', 'SMO296G0027' => 'smo', 'SMO296G0038' => 'smo', 'SMO296G0039' => 'smo', 'SMO353G0413' => 'smo', 'Solyc01g106150.1' => 'sly', 'Solyc04g077920.3' => 'sly', 'Solyc12g088370.2' => 'sly', 'Sopen00g013750' => 'spe', 'Sopen01g048530' => 'spe', 'Sopen04g031520' => 'spe', 'Sopen12g030350' => 'spe', 'Sp1g24010' => 'spa', 'TAR376G0191' => 'tar', 'TAR376G1139' => 'tar', 'TAR381G1089' => 'tar', 'TAR625G0071' => 'tar', 'TAR628G0276' => 'tar', 'TAR628G1204' => 'tar', 'THA.LOC104814188' => 'tha', 'THA.LOC104820516' => 'tha', 'Thecc.02G114600' => 'tca', 'Thecc.02G116500' => 'tca', 'Thecc.08G089800' => 'tca', 'Thhalv10001793m.g' => 'esa', 'Thhalv10007663m.g' => 'esa', 'Thhalv10009506m.g' => 'esa', 'Thhalv10017549m.g' => 'esa', 'Thhalv10017552m.g' => 'esa', 'Thhalv10017670m.g' => 'esa', 'TPR.G33694' => 'tpr', 'TWI12G0489' => 'twi', 'TWI14G0093' => 'twi', 'TWI56G0614' => 'twi', 'TWI74G1357' => 'twi', 'unitig_578.g16147' => 'ugi', 'unitig_8.g4879' => 'ugi', 'vmacro01963' => 'vma', 'vmacro21437' => 'vma', 'VMungo0540G1757' => 'vmu', 'VMungo0647G0922' => 'vmu', 'VMungo1309G1787' => 'vmu', 'Zm00001eb020780' => 'zma', 'Zm00001eb108170' => 'zma', 'Zm00001eb326080' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002133' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002133' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002133' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002133' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002133', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '314', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A07p11580' => 'bna', 'A08p26060' => 'bna', 'A09p38330' => 'bna', 'Aa31sc113G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.183' => 'aag', 'Actinidia00373' => 'ach', 'Actinidia00374' => 'ach', 'Actinidia10193' => 'ach', 'Actinidia22690' => 'ach', 'Actinidia38102' => 'ach', 'Ah.11g039780' => 'amhyb', 'AL1G41310' => 'aly', 'Aqoxy1G02357' => 'aox', 'Aqoxy1G02406' => 'aox', 'Aqoxy1G02502' => 'aox', 'Aqoxy1G02669' => 'aox', 'Aqoxy1G02887' => 'aox', 'Aqoxy1G03040' => 'aox', 'Aqoxy2G02320' => 'aox', 'Aqoxy5G00879' => 'aox', 'Aqoxy5G03178' => 'aox', 'Aqoxy5G03179' => 'aox', 'Aqoxy6G02657' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MR8KE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60DR5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68HS6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZRQ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0RFJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C26UD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CH195H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFKR07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXTN9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VTP83K' => 'arhy', 'AT1G27760' => 'ath', 'ATR0208G038' => 'atr', 'Atru.chr13.822' => 'acertr', 'AUR62022485' => 'cqu', 'AUR62037427' => 'cqu', 'BcaB03g13968' => 'bca', 'BcaB08g34833' => 'bca', 'BcaC01g01568' => 'bca', 'BcaC01g01569' => 'bca', 'BcaC01g01570' => 'bca', 'BcaC05g26776' => 'bca', 'BcaC06g35320' => 'bca', 'BcaNung06154' => 'bca', 'BolC3t19708H' => 'bol', 'BolC5t31367H' => 'bol', 'BolC7t42251H' => 'bol', 'BraA07t28946Z' => 'bra', 'BraA08t34556Z' => 'bra', 'BraA09t39343Z' => 'bra', 'C03p74600' => 'bna', 'C05p26460' => 'bna', 'C07p17460' => 'bna', 'CAN.G107.49' => 'can', 'CAN.G504.35' => 'can', 'CAN.G724.13' => 'can', 'CANSAT25G1442' => 'cansat', 'CANSAT80G1456' => 'cansat', 'CARHR027280' => 'chi', 'Carub.0001s2628' => 'cru', 'Ca_15902_v3' => 'car', 'CBR_g3782' => 'cbr', 'Cc10_g05710' => 'ccan', 'CDE02G2866' => 'cde', 'CDE04G2518' => 'cde', 'Ciclev10001181m.g' => 'ccl', 'CiPaw.07G175700' => 'cil', 'CiPaw.08G049800' => 'cil', 'ClCG05G020570' => 'cla', 'COL.COLO4_28515' => 'col', 'Cpa.g.sc142.18' => 'cpa', 'Cre03.g202500' => 'cre', 'CsaV3_4G035010' => 'csa', 'CSS0013335' => 'camsi', 'CSS0015739' => 'camsi', 'CSS0028243' => 'camsi', 'CSS0038052' => 'camsi', 'DCAR_009883' => 'dca', 'DCAR_013721' => 'dca', 'DCAR_016840' => 'dca', 'DCAR_020073' => 'dca', 'Dinv04580' => 'din', 'Dinv39230' => 'din', 'Dinv44960' => 'din', 'Duzib041G0730' => 'dzi', 'Duzib052G0091' => 'dzi', 'Duzib093G0932' => 'dzi', 'Duzib116G0883' => 'dzi', 'ECA232G3220' => 'eca', 'ECA246G3335' => 'eca', 'EL10Ac1g02389' => 'bvu', 'Eucgr.F02256' => 'egr', 'Eucgr.I01064' => 'egr', 'FAN04G0376' => 'fan', 'FAN15G1432' => 'fan', 'FAN15G1988' => 'fan', 'FAN15G2993' => 'fan', 'FAN18G1869' => 'fan', 'FAN19G2748' => 'fan', 'FAN20G1995' => 'fan', 'FAN20G2377' => 'fan', 'FAN20G3115' => 'fan', 'FAN24G1433' => 'fan', 'FAN24G2013' => 'fan', 'FAN24G2138' => 'fan', 'FAN24G2512' => 'fan', 'FAN26G1173' => 'fan', 'FAN26G3182' => 'fan', 'FAN27G0263' => 'fan', 'FAN27G1056' => 'fan', 'FAN27G1207' => 'fan', 'FAN27G1338' => 'fan', 'FvH4_1g08070' => 'fve', 'FvH4_2g04330' => 'fve', 'FvH4_2g32270' => 'fve', 'FvH4_2g33200' => 'fve', 'FvH4_5g33120' => 'fve', 'Glyma.04G045600' => 'gma', 'Glyma.06G046300' => 'gma', 'Glyma.14G089009' => 'gma', 'Glyma.17G235100' => 'gma', 'Gohir.A02G017701' => 'ghi', 'Gohir.A02G081200' => 'ghi', 'Gohir.A05G209400' => 'ghi', 'Gohir.A05G263101' => 'ghi', 'Gohir.A06G111004' => 'ghi', 'Gohir.A07G032566' => 'ghi', 'Gohir.A07G129601' => 'ghi', 'Gohir.A07G155050' => 'ghi', 'Gohir.A09G170450' => 'ghi', 'Gohir.A10G175251' => 'ghi', 'Gohir.A13G046500' => 'ghi', 'Gohir.A13G189950' => 'ghi', 'Gohir.D02G088900' => 'ghi', 'Gohir.D03G104750' => 'ghi', 'Gohir.D04G071950' => 'ghi', 'Gohir.D05G212800' => 'ghi', 'Gohir.D05G265300' => 'ghi', 'Gohir.D07G033450' => 'ghi', 'Gohir.D08G111408' => 'ghi', 'Gohir.D10G122550' => 'ghi', 'Gohir.D13G042500' => 'ghi', 'Gorai.003G110700' => 'gra', 'Gorai.005G099600' => 'gra', 'Gorai.007G097500' => 'gra', 'Gorai.009G219300' => 'gra', 'Gorai.009G277100' => 'gra', 'Gorai.011G135000' => 'gra', 'Gorai.013G050400' => 'gra', 'GSVIVG01009354001' => 'vvi', 'GSVIVG01009839001' => 'vvi', 'GSVIVG01037843001' => 'vvi', 'HanXRQChr01g0027951' => 'han', 'HanXRQChr06g0175321' => 'han', 'HanXRQChr09g0266701' => 'han', 'Haze_22448' => 'cav', 'Hma1.2p1_0819F.1_g223760' => 'hma', 'Hma1.2p1_1059F.1_g252940' => 'hma', 'HPP92_009539' => 'vpl', 'Hund24035' => 'sun', 'Lalb_Chr02g0144991' => 'lal', 'Lalb_Chr08g0245541' => 'lal', 'Lalb_Chr22g0355651' => 'lal', 'Lalb_Chr23g0267501' => 'lal', 'Lj1g0026971' => 'lja', 'Lj4A70G38' => 'lonja', 'Lj4A759T44' => 'lonja', 'Lj4A759T45' => 'lonja', 'Lj5A219T39' => 'lonja', 'Lj5g0009817' => 'lja', 'Lsat_1_v5_gn_3_33441' => 'lsa', 'Lsat_1_v5_gn_4_131141' => 'lsa', 'Lsat_1_v5_gn_4_93941' => 'lsa', 'Lsat_1_v5_gn_6_112361' => 'lsa', 'Lsat_1_v5_gn_6_23981' => 'lsa', 'Manes.05G181400' => 'mes', 'Manes.18G045800' => 'mes', 'Mapoly0071s0061' => 'mpo', 'MBI16_g01178_MAGBIO' => 'mbi', 'MBI16_g01179_MAGBIO' => 'mbi', 'MBI16_g01180_MAGBIO' => 'mbi', 'MBI18_g24148_MAGBIO' => 'mbi', 'MD00G1169900' => 'mdo', 'MD00G1170100' => 'mdo', 'MD08G1085400' => 'mdo', 'MD08G1085500' => 'mdo', 'MD08G1085800' => 'mdo', 'MD10G1105600' => 'mdo', 'MD10G1151100' => 'mdo', 'MD15G1071000' => 'mdo', 'Medtr3g103090' => 'mtr', 'MELO3C016813.2' => 'cme', 'Migut.N01141' => 'egut', 'Migut.N02776' => 'egut', 'MSTRG.22223' => 'ama', 'MSTRG.24371' => 'ama', 'MSTRG.27763' => 'ama', 'Nitab4.5_0000068g0520' => 'nta', 'Nitab4.5_0000164g0130' => 'nta', 'Nitab4.5_0000569g0190' => 'nta', 'Nitab4.5_0001298g0040' => 'nta', 'Nitab4.5_0002314g0110' => 'nta', 'Nitab4.5_0002968g0020' => 'nta', 'Nitab4.5_0003803g0030' => 'nta', 'Nitab4.5_0005301g0030' => 'nta', 'Nn1g03720' => 'nnu', 'Nn1g04581' => 'nnu', 'Nn2g15136' => 'nnu', 'Nn5g30562' => 'nnu', 'Nn8g39787' => 'nnu', 'Oeu037279.1' => 'oeu', 'Oeu037500.1' => 'oeu', 'Oeu048578.1' => 'oeu', 'Os02g0219000' => 'osa', 'Os02g0219050' => 'osa', 'Os03g0448700' => 'osa', 'Os07g0588000' => 'osa', 'Os08g0491400' => 'osa', 'Peaxi162Scf00003g04822' => 'pax', 'Peaxi162Scf00017g02838' => 'pax', 'Peaxi162Scf00081g01710' => 'pax', 'Peaxi162Scf00102g01358' => 'pax', 'Peaxi162Scf00179g00010' => 'pax', 'Peaxi162Scf00179g00011' => 'pax', 'Peaxi162Scf00267g00614' => 'pax', 'PGR031G1293' => 'pgr', 'PGR120G0002' => 'pgr', 'PGR142G2399' => 'pgr', 'PGSC0003DMG400010671' => 'stu', 'PGSC0003DMG400011546' => 'stu', 'PGSC0003DMG400021507' => 'stu', 'Phvul.001G027600' => 'pvu', 'Phvul.009G071500' => 'pvu', 'Potri.002G119100' => 'ptr', 'Potri.009G088700' => 'ptr', 'Potri.014G016800' => 'ptr', 'Pp3c11_19710' => 'ppa', 'Pp3c20_9970' => 'ppa', 'Pp3c23_4310' => 'ppa', 'Prupe.1G423700' => 'ppe', 'Prupe.3G276000' => 'ppe', 'Prupe.8G144400' => 'ppe', 'Psat5g039040' => 'psa', 'PSO017G4718' => 'pso', 'PSO170G0233' => 'pso', 'PSO541G1264' => 'pso', 'PSO675G0857' => 'pso', 'PSO675G6693' => 'pso', 'QL12p037925' => 'qlo', 'RcHm_v2.0_Chr2g0094131' => 'rch', 'RcHm_v2.0_Chr6g0253771' => 'rch', 'RcHm_v2.0_Chr6g0309471' => 'rch', 'Rhsim06G0061800' => 'rsi', 'Rhsim11G0151300' => 'rsi', 'Rhsim11G0151500' => 'rsi', 'Rhsim11G0152900' => 'rsi', 'Sabra02G0093600' => 'sbr', 'SalBow7G0136' => 'sbo', 'Sc15g0003510' => 'sci', 'Sed0019340' => 'sed', 'SGA_v2.0_scaffold219G42529' => 'sas', 'SGA_v2.0_scaffold28G11825' => 'sas', 'SMO141G0038' => 'smo', 'SMO174G0013' => 'smo', 'SMO174G0098' => 'smo', 'SMO174G0244' => 'smo', 'SMO296G0017' => 'smo', 'SMO296G0027' => 'smo', 'SMO296G0038' => 'smo', 'SMO296G0039' => 'smo', 'SMO353G0413' => 'smo', 'Solyc01g106150.1' => 'sly', 'Solyc04g077920.3' => 'sly', 'Solyc12g088370.2' => 'sly', 'Sopen00g013750' => 'spe', 'Sopen01g048530' => 'spe', 'Sopen04g031520' => 'spe', 'Sopen12g030350' => 'spe', 'Sp1g24010' => 'spa', 'TAR376G0191' => 'tar', 'TAR376G1139' => 'tar', 'TAR381G1089' => 'tar', 'TAR625G0071' => 'tar', 'TAR628G0276' => 'tar', 'TAR628G1204' => 'tar', 'THA.LOC104814188' => 'tha', 'THA.LOC104820516' => 'tha', 'Thecc.02G114600' => 'tca', 'Thecc.02G116500' => 'tca', 'Thecc.08G089800' => 'tca', 'Thhalv10001793m.g' => 'esa', 'Thhalv10007663m.g' => 'esa', 'Thhalv10009506m.g' => 'esa', 'Thhalv10017549m.g' => 'esa', 'Thhalv10017552m.g' => 'esa', 'Thhalv10017670m.g' => 'esa', 'TPR.G33694' => 'tpr', 'TWI12G0489' => 'twi', 'TWI14G0093' => 'twi', 'TWI56G0614' => 'twi', 'TWI74G1357' => 'twi', 'unitig_578.g16147' => 'ugi', 'unitig_8.g4879' => 'ugi', 'vmacro01963' => 'vma', 'vmacro21437' => 'vma', 'VMungo0540G1757' => 'vmu', 'VMungo0647G0922' => 'vmu', 'VMungo1309G1787' => 'vmu', 'Zm00001eb020780' => 'zma', 'Zm00001eb108170' => 'zma', 'Zm00001eb326080' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002133', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002133' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002133', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '314', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002133' ) ), 'genes' => array( 'A07p11580' => 'bna', 'A08p26060' => 'bna', 'A09p38330' => 'bna', 'Aa31sc113G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.183' => 'aag', 'Actinidia00373' => 'ach', 'Actinidia00374' => 'ach', 'Actinidia10193' => 'ach', 'Actinidia22690' => 'ach', 'Actinidia38102' => 'ach', 'Ah.11g039780' => 'amhyb', 'AL1G41310' => 'aly', 'Aqoxy1G02357' => 'aox', 'Aqoxy1G02406' => 'aox', 'Aqoxy1G02502' => 'aox', 'Aqoxy1G02669' => 'aox', 'Aqoxy1G02887' => 'aox', 'Aqoxy1G03040' => 'aox', 'Aqoxy2G02320' => 'aox', 'Aqoxy5G00879' => 'aox', 'Aqoxy5G03178' => 'aox', 'Aqoxy5G03179' => 'aox', 'Aqoxy6G02657' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MR8KE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60DR5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68HS6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZRQ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0RFJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C26UD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CH195H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFKR07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXTN9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VTP83K' => 'arhy', 'AT1G27760' => 'ath', 'ATR0208G038' => 'atr', 'Atru.chr13.822' => 'acertr', 'AUR62022485' => 'cqu', 'AUR62037427' => 'cqu', 'BcaB03g13968' => 'bca', 'BcaB08g34833' => 'bca', 'BcaC01g01568' => 'bca', 'BcaC01g01569' => 'bca', 'BcaC01g01570' => 'bca', 'BcaC05g26776' => 'bca', 'BcaC06g35320' => 'bca', 'BcaNung06154' => 'bca', 'BolC3t19708H' => 'bol', 'BolC5t31367H' => 'bol', 'BolC7t42251H' => 'bol', 'BraA07t28946Z' => 'bra', 'BraA08t34556Z' => 'bra', 'BraA09t39343Z' => 'bra', 'C03p74600' => 'bna', 'C05p26460' => 'bna', 'C07p17460' => 'bna', 'CAN.G107.49' => 'can', 'CAN.G504.35' => 'can', 'CAN.G724.13' => 'can', 'CANSAT25G1442' => 'cansat', 'CANSAT80G1456' => 'cansat', 'CARHR027280' => 'chi', 'Carub.0001s2628' => 'cru', 'Ca_15902_v3' => 'car', 'CBR_g3782' => 'cbr', 'Cc10_g05710' => 'ccan', 'CDE02G2866' => 'cde', 'CDE04G2518' => 'cde', 'Ciclev10001181m.g' => 'ccl', 'CiPaw.07G175700' => 'cil', 'CiPaw.08G049800' => 'cil', 'ClCG05G020570' => 'cla', 'COL.COLO4_28515' => 'col', 'Cpa.g.sc142.18' => 'cpa', 'Cre03.g202500' => 'cre', 'CsaV3_4G035010' => 'csa', 'CSS0013335' => 'camsi', 'CSS0015739' => 'camsi', 'CSS0028243' => 'camsi', 'CSS0038052' => 'camsi', 'DCAR_009883' => 'dca', 'DCAR_013721' => 'dca', 'DCAR_016840' => 'dca', 'DCAR_020073' => 'dca', 'Dinv04580' => 'din', 'Dinv39230' => 'din', 'Dinv44960' => 'din', 'Duzib041G0730' => 'dzi', 'Duzib052G0091' => 'dzi', 'Duzib093G0932' => 'dzi', 'Duzib116G0883' => 'dzi', 'ECA232G3220' => 'eca', 'ECA246G3335' => 'eca', 'EL10Ac1g02389' => 'bvu', 'Eucgr.F02256' => 'egr', 'Eucgr.I01064' => 'egr', 'FAN04G0376' => 'fan', 'FAN15G1432' => 'fan', 'FAN15G1988' => 'fan', 'FAN15G2993' => 'fan', 'FAN18G1869' => 'fan', 'FAN19G2748' => 'fan', 'FAN20G1995' => 'fan', 'FAN20G2377' => 'fan', 'FAN20G3115' => 'fan', 'FAN24G1433' => 'fan', 'FAN24G2013' => 'fan', 'FAN24G2138' => 'fan', 'FAN24G2512' => 'fan', 'FAN26G1173' => 'fan', 'FAN26G3182' => 'fan', 'FAN27G0263' => 'fan', 'FAN27G1056' => 'fan', 'FAN27G1207' => 'fan', 'FAN27G1338' => 'fan', 'FvH4_1g08070' => 'fve', 'FvH4_2g04330' => 'fve', 'FvH4_2g32270' => 'fve', 'FvH4_2g33200' => 'fve', 'FvH4_5g33120' => 'fve', 'Glyma.04G045600' => 'gma', 'Glyma.06G046300' => 'gma', 'Glyma.14G089009' => 'gma', 'Glyma.17G235100' => 'gma', 'Gohir.A02G017701' => 'ghi', 'Gohir.A02G081200' => 'ghi', 'Gohir.A05G209400' => 'ghi', 'Gohir.A05G263101' => 'ghi', 'Gohir.A06G111004' => 'ghi', 'Gohir.A07G032566' => 'ghi', 'Gohir.A07G129601' => 'ghi', 'Gohir.A07G155050' => 'ghi', 'Gohir.A09G170450' => 'ghi', 'Gohir.A10G175251' => 'ghi', 'Gohir.A13G046500' => 'ghi', 'Gohir.A13G189950' => 'ghi', 'Gohir.D02G088900' => 'ghi', 'Gohir.D03G104750' => 'ghi', 'Gohir.D04G071950' => 'ghi', 'Gohir.D05G212800' => 'ghi', 'Gohir.D05G265300' => 'ghi', 'Gohir.D07G033450' => 'ghi', 'Gohir.D08G111408' => 'ghi', 'Gohir.D10G122550' => 'ghi', 'Gohir.D13G042500' => 'ghi', 'Gorai.003G110700' => 'gra', 'Gorai.005G099600' => 'gra', 'Gorai.007G097500' => 'gra', 'Gorai.009G219300' => 'gra', 'Gorai.009G277100' => 'gra', 'Gorai.011G135000' => 'gra', 'Gorai.013G050400' => 'gra', 'GSVIVG01009354001' => 'vvi', 'GSVIVG01009839001' => 'vvi', 'GSVIVG01037843001' => 'vvi', 'HanXRQChr01g0027951' => 'han', 'HanXRQChr06g0175321' => 'han', 'HanXRQChr09g0266701' => 'han', 'Haze_22448' => 'cav', 'Hma1.2p1_0819F.1_g223760' => 'hma', 'Hma1.2p1_1059F.1_g252940' => 'hma', 'HPP92_009539' => 'vpl', 'Hund24035' => 'sun', 'Lalb_Chr02g0144991' => 'lal', 'Lalb_Chr08g0245541' => 'lal', 'Lalb_Chr22g0355651' => 'lal', 'Lalb_Chr23g0267501' => 'lal', 'Lj1g0026971' => 'lja', 'Lj4A70G38' => 'lonja', 'Lj4A759T44' => 'lonja', 'Lj4A759T45' => 'lonja', 'Lj5A219T39' => 'lonja', 'Lj5g0009817' => 'lja', 'Lsat_1_v5_gn_3_33441' => 'lsa', 'Lsat_1_v5_gn_4_131141' => 'lsa', 'Lsat_1_v5_gn_4_93941' => 'lsa', 'Lsat_1_v5_gn_6_112361' => 'lsa', 'Lsat_1_v5_gn_6_23981' => 'lsa', 'Manes.05G181400' => 'mes', 'Manes.18G045800' => 'mes', 'Mapoly0071s0061' => 'mpo', 'MBI16_g01178_MAGBIO' => 'mbi', 'MBI16_g01179_MAGBIO' => 'mbi', 'MBI16_g01180_MAGBIO' => 'mbi', 'MBI18_g24148_MAGBIO' => 'mbi', 'MD00G1169900' => 'mdo', 'MD00G1170100' => 'mdo', 'MD08G1085400' => 'mdo', 'MD08G1085500' => 'mdo', 'MD08G1085800' => 'mdo', 'MD10G1105600' => 'mdo', 'MD10G1151100' => 'mdo', 'MD15G1071000' => 'mdo', 'Medtr3g103090' => 'mtr', 'MELO3C016813.2' => 'cme', 'Migut.N01141' => 'egut', 'Migut.N02776' => 'egut', 'MSTRG.22223' => 'ama', 'MSTRG.24371' => 'ama', 'MSTRG.27763' => 'ama', 'Nitab4.5_0000068g0520' => 'nta', 'Nitab4.5_0000164g0130' => 'nta', 'Nitab4.5_0000569g0190' => 'nta', 'Nitab4.5_0001298g0040' => 'nta', 'Nitab4.5_0002314g0110' => 'nta', 'Nitab4.5_0002968g0020' => 'nta', 'Nitab4.5_0003803g0030' => 'nta', 'Nitab4.5_0005301g0030' => 'nta', 'Nn1g03720' => 'nnu', 'Nn1g04581' => 'nnu', 'Nn2g15136' => 'nnu', 'Nn5g30562' => 'nnu', 'Nn8g39787' => 'nnu', 'Oeu037279.1' => 'oeu', 'Oeu037500.1' => 'oeu', 'Oeu048578.1' => 'oeu', 'Os02g0219000' => 'osa', 'Os02g0219050' => 'osa', 'Os03g0448700' => 'osa', 'Os07g0588000' => 'osa', 'Os08g0491400' => 'osa', 'Peaxi162Scf00003g04822' => 'pax', 'Peaxi162Scf00017g02838' => 'pax', 'Peaxi162Scf00081g01710' => 'pax', 'Peaxi162Scf00102g01358' => 'pax', 'Peaxi162Scf00179g00010' => 'pax', 'Peaxi162Scf00179g00011' => 'pax', 'Peaxi162Scf00267g00614' => 'pax', 'PGR031G1293' => 'pgr', 'PGR120G0002' => 'pgr', 'PGR142G2399' => 'pgr', 'PGSC0003DMG400010671' => 'stu', 'PGSC0003DMG400011546' => 'stu', 'PGSC0003DMG400021507' => 'stu', 'Phvul.001G027600' => 'pvu', 'Phvul.009G071500' => 'pvu', 'Potri.002G119100' => 'ptr', 'Potri.009G088700' => 'ptr', 'Potri.014G016800' => 'ptr', 'Pp3c11_19710' => 'ppa', 'Pp3c20_9970' => 'ppa', 'Pp3c23_4310' => 'ppa', 'Prupe.1G423700' => 'ppe', 'Prupe.3G276000' => 'ppe', 'Prupe.8G144400' => 'ppe', 'Psat5g039040' => 'psa', 'PSO017G4718' => 'pso', 'PSO170G0233' => 'pso', 'PSO541G1264' => 'pso', 'PSO675G0857' => 'pso', 'PSO675G6693' => 'pso', 'QL12p037925' => 'qlo', 'RcHm_v2.0_Chr2g0094131' => 'rch', 'RcHm_v2.0_Chr6g0253771' => 'rch', 'RcHm_v2.0_Chr6g0309471' => 'rch', 'Rhsim06G0061800' => 'rsi', 'Rhsim11G0151300' => 'rsi', 'Rhsim11G0151500' => 'rsi', 'Rhsim11G0152900' => 'rsi', 'Sabra02G0093600' => 'sbr', 'SalBow7G0136' => 'sbo', 'Sc15g0003510' => 'sci', 'Sed0019340' => 'sed', 'SGA_v2.0_scaffold219G42529' => 'sas', 'SGA_v2.0_scaffold28G11825' => 'sas', 'SMO141G0038' => 'smo', 'SMO174G0013' => 'smo', 'SMO174G0098' => 'smo', 'SMO174G0244' => 'smo', 'SMO296G0017' => 'smo', 'SMO296G0027' => 'smo', 'SMO296G0038' => 'smo', 'SMO296G0039' => 'smo', 'SMO353G0413' => 'smo', 'Solyc01g106150.1' => 'sly', 'Solyc04g077920.3' => 'sly', 'Solyc12g088370.2' => 'sly', 'Sopen00g013750' => 'spe', 'Sopen01g048530' => 'spe', 'Sopen04g031520' => 'spe', 'Sopen12g030350' => 'spe', 'Sp1g24010' => 'spa', 'TAR376G0191' => 'tar', 'TAR376G1139' => 'tar', 'TAR381G1089' => 'tar', 'TAR625G0071' => 'tar', 'TAR628G0276' => 'tar', 'TAR628G1204' => 'tar', 'THA.LOC104814188' => 'tha', 'THA.LOC104820516' => 'tha', 'Thecc.02G114600' => 'tca', 'Thecc.02G116500' => 'tca', 'Thecc.08G089800' => 'tca', 'Thhalv10001793m.g' => 'esa', 'Thhalv10007663m.g' => 'esa', 'Thhalv10009506m.g' => 'esa', 'Thhalv10017549m.g' => 'esa', 'Thhalv10017552m.g' => 'esa', 'Thhalv10017670m.g' => 'esa', 'TPR.G33694' => 'tpr', 'TWI12G0489' => 'twi', 'TWI14G0093' => 'twi', 'TWI56G0614' => 'twi', 'TWI74G1357' => 'twi', 'unitig_578.g16147' => 'ugi', 'unitig_8.g4879' => 'ugi', 'vmacro01963' => 'vma', 'vmacro21437' => 'vma', 'VMungo0540G1757' => 'vmu', 'VMungo0647G0922' => 'vmu', 'VMungo1309G1787' => 'vmu', 'Zm00001eb020780' => 'zma', 'Zm00001eb108170' => 'zma', 'Zm00001eb326080' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002133' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002133' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002133' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002133' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002133', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '314', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A07p11580' => 'bna', 'A08p26060' => 'bna', 'A09p38330' => 'bna', 'Aa31sc113G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.183' => 'aag', 'Actinidia00373' => 'ach', 'Actinidia00374' => 'ach', 'Actinidia10193' => 'ach', 'Actinidia22690' => 'ach', 'Actinidia38102' => 'ach', 'Ah.11g039780' => 'amhyb', 'AL1G41310' => 'aly', 'Aqoxy1G02357' => 'aox', 'Aqoxy1G02406' => 'aox', 'Aqoxy1G02502' => 'aox', 'Aqoxy1G02669' => 'aox', 'Aqoxy1G02887' => 'aox', 'Aqoxy1G03040' => 'aox', 'Aqoxy2G02320' => 'aox', 'Aqoxy5G00879' => 'aox', 'Aqoxy5G03178' => 'aox', 'Aqoxy5G03179' => 'aox', 'Aqoxy6G02657' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MR8KE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60DR5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68HS6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZRQ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0RFJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C26UD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CH195H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFKR07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXTN9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VTP83K' => 'arhy', 'AT1G27760' => 'ath', 'ATR0208G038' => 'atr', 'Atru.chr13.822' => 'acertr', 'AUR62022485' => 'cqu', 'AUR62037427' => 'cqu', 'BcaB03g13968' => 'bca', 'BcaB08g34833' => 'bca', 'BcaC01g01568' => 'bca', 'BcaC01g01569' => 'bca', 'BcaC01g01570' => 'bca', 'BcaC05g26776' => 'bca', 'BcaC06g35320' => 'bca', 'BcaNung06154' => 'bca', 'BolC3t19708H' => 'bol', 'BolC5t31367H' => 'bol', 'BolC7t42251H' => 'bol', 'BraA07t28946Z' => 'bra', 'BraA08t34556Z' => 'bra', 'BraA09t39343Z' => 'bra', 'C03p74600' => 'bna', 'C05p26460' => 'bna', 'C07p17460' => 'bna', 'CAN.G107.49' => 'can', 'CAN.G504.35' => 'can', 'CAN.G724.13' => 'can', 'CANSAT25G1442' => 'cansat', 'CANSAT80G1456' => 'cansat', 'CARHR027280' => 'chi', 'Carub.0001s2628' => 'cru', 'Ca_15902_v3' => 'car', 'CBR_g3782' => 'cbr', 'Cc10_g05710' => 'ccan', 'CDE02G2866' => 'cde', 'CDE04G2518' => 'cde', 'Ciclev10001181m.g' => 'ccl', 'CiPaw.07G175700' => 'cil', 'CiPaw.08G049800' => 'cil', 'ClCG05G020570' => 'cla', 'COL.COLO4_28515' => 'col', 'Cpa.g.sc142.18' => 'cpa', 'Cre03.g202500' => 'cre', 'CsaV3_4G035010' => 'csa', 'CSS0013335' => 'camsi', 'CSS0015739' => 'camsi', 'CSS0028243' => 'camsi', 'CSS0038052' => 'camsi', 'DCAR_009883' => 'dca', 'DCAR_013721' => 'dca', 'DCAR_016840' => 'dca', 'DCAR_020073' => 'dca', 'Dinv04580' => 'din', 'Dinv39230' => 'din', 'Dinv44960' => 'din', 'Duzib041G0730' => 'dzi', 'Duzib052G0091' => 'dzi', 'Duzib093G0932' => 'dzi', 'Duzib116G0883' => 'dzi', 'ECA232G3220' => 'eca', 'ECA246G3335' => 'eca', 'EL10Ac1g02389' => 'bvu', 'Eucgr.F02256' => 'egr', 'Eucgr.I01064' => 'egr', 'FAN04G0376' => 'fan', 'FAN15G1432' => 'fan', 'FAN15G1988' => 'fan', 'FAN15G2993' => 'fan', 'FAN18G1869' => 'fan', 'FAN19G2748' => 'fan', 'FAN20G1995' => 'fan', 'FAN20G2377' => 'fan', 'FAN20G3115' => 'fan', 'FAN24G1433' => 'fan', 'FAN24G2013' => 'fan', 'FAN24G2138' => 'fan', 'FAN24G2512' => 'fan', 'FAN26G1173' => 'fan', 'FAN26G3182' => 'fan', 'FAN27G0263' => 'fan', 'FAN27G1056' => 'fan', 'FAN27G1207' => 'fan', 'FAN27G1338' => 'fan', 'FvH4_1g08070' => 'fve', 'FvH4_2g04330' => 'fve', 'FvH4_2g32270' => 'fve', 'FvH4_2g33200' => 'fve', 'FvH4_5g33120' => 'fve', 'Glyma.04G045600' => 'gma', 'Glyma.06G046300' => 'gma', 'Glyma.14G089009' => 'gma', 'Glyma.17G235100' => 'gma', 'Gohir.A02G017701' => 'ghi', 'Gohir.A02G081200' => 'ghi', 'Gohir.A05G209400' => 'ghi', 'Gohir.A05G263101' => 'ghi', 'Gohir.A06G111004' => 'ghi', 'Gohir.A07G032566' => 'ghi', 'Gohir.A07G129601' => 'ghi', 'Gohir.A07G155050' => 'ghi', 'Gohir.A09G170450' => 'ghi', 'Gohir.A10G175251' => 'ghi', 'Gohir.A13G046500' => 'ghi', 'Gohir.A13G189950' => 'ghi', 'Gohir.D02G088900' => 'ghi', 'Gohir.D03G104750' => 'ghi', 'Gohir.D04G071950' => 'ghi', 'Gohir.D05G212800' => 'ghi', 'Gohir.D05G265300' => 'ghi', 'Gohir.D07G033450' => 'ghi', 'Gohir.D08G111408' => 'ghi', 'Gohir.D10G122550' => 'ghi', 'Gohir.D13G042500' => 'ghi', 'Gorai.003G110700' => 'gra', 'Gorai.005G099600' => 'gra', 'Gorai.007G097500' => 'gra', 'Gorai.009G219300' => 'gra', 'Gorai.009G277100' => 'gra', 'Gorai.011G135000' => 'gra', 'Gorai.013G050400' => 'gra', 'GSVIVG01009354001' => 'vvi', 'GSVIVG01009839001' => 'vvi', 'GSVIVG01037843001' => 'vvi', 'HanXRQChr01g0027951' => 'han', 'HanXRQChr06g0175321' => 'han', 'HanXRQChr09g0266701' => 'han', 'Haze_22448' => 'cav', 'Hma1.2p1_0819F.1_g223760' => 'hma', 'Hma1.2p1_1059F.1_g252940' => 'hma', 'HPP92_009539' => 'vpl', 'Hund24035' => 'sun', 'Lalb_Chr02g0144991' => 'lal', 'Lalb_Chr08g0245541' => 'lal', 'Lalb_Chr22g0355651' => 'lal', 'Lalb_Chr23g0267501' => 'lal', 'Lj1g0026971' => 'lja', 'Lj4A70G38' => 'lonja', 'Lj4A759T44' => 'lonja', 'Lj4A759T45' => 'lonja', 'Lj5A219T39' => 'lonja', 'Lj5g0009817' => 'lja', 'Lsat_1_v5_gn_3_33441' => 'lsa', 'Lsat_1_v5_gn_4_131141' => 'lsa', 'Lsat_1_v5_gn_4_93941' => 'lsa', 'Lsat_1_v5_gn_6_112361' => 'lsa', 'Lsat_1_v5_gn_6_23981' => 'lsa', 'Manes.05G181400' => 'mes', 'Manes.18G045800' => 'mes', 'Mapoly0071s0061' => 'mpo', 'MBI16_g01178_MAGBIO' => 'mbi', 'MBI16_g01179_MAGBIO' => 'mbi', 'MBI16_g01180_MAGBIO' => 'mbi', 'MBI18_g24148_MAGBIO' => 'mbi', 'MD00G1169900' => 'mdo', 'MD00G1170100' => 'mdo', 'MD08G1085400' => 'mdo', 'MD08G1085500' => 'mdo', 'MD08G1085800' => 'mdo', 'MD10G1105600' => 'mdo', 'MD10G1151100' => 'mdo', 'MD15G1071000' => 'mdo', 'Medtr3g103090' => 'mtr', 'MELO3C016813.2' => 'cme', 'Migut.N01141' => 'egut', 'Migut.N02776' => 'egut', 'MSTRG.22223' => 'ama', 'MSTRG.24371' => 'ama', 'MSTRG.27763' => 'ama', 'Nitab4.5_0000068g0520' => 'nta', 'Nitab4.5_0000164g0130' => 'nta', 'Nitab4.5_0000569g0190' => 'nta', 'Nitab4.5_0001298g0040' => 'nta', 'Nitab4.5_0002314g0110' => 'nta', 'Nitab4.5_0002968g0020' => 'nta', 'Nitab4.5_0003803g0030' => 'nta', 'Nitab4.5_0005301g0030' => 'nta', 'Nn1g03720' => 'nnu', 'Nn1g04581' => 'nnu', 'Nn2g15136' => 'nnu', 'Nn5g30562' => 'nnu', 'Nn8g39787' => 'nnu', 'Oeu037279.1' => 'oeu', 'Oeu037500.1' => 'oeu', 'Oeu048578.1' => 'oeu', 'Os02g0219000' => 'osa', 'Os02g0219050' => 'osa', 'Os03g0448700' => 'osa', 'Os07g0588000' => 'osa', 'Os08g0491400' => 'osa', 'Peaxi162Scf00003g04822' => 'pax', 'Peaxi162Scf00017g02838' => 'pax', 'Peaxi162Scf00081g01710' => 'pax', 'Peaxi162Scf00102g01358' => 'pax', 'Peaxi162Scf00179g00010' => 'pax', 'Peaxi162Scf00179g00011' => 'pax', 'Peaxi162Scf00267g00614' => 'pax', 'PGR031G1293' => 'pgr', 'PGR120G0002' => 'pgr', 'PGR142G2399' => 'pgr', 'PGSC0003DMG400010671' => 'stu', 'PGSC0003DMG400011546' => 'stu', 'PGSC0003DMG400021507' => 'stu', 'Phvul.001G027600' => 'pvu', 'Phvul.009G071500' => 'pvu', 'Potri.002G119100' => 'ptr', 'Potri.009G088700' => 'ptr', 'Potri.014G016800' => 'ptr', 'Pp3c11_19710' => 'ppa', 'Pp3c20_9970' => 'ppa', 'Pp3c23_4310' => 'ppa', 'Prupe.1G423700' => 'ppe', 'Prupe.3G276000' => 'ppe', 'Prupe.8G144400' => 'ppe', 'Psat5g039040' => 'psa', 'PSO017G4718' => 'pso', 'PSO170G0233' => 'pso', 'PSO541G1264' => 'pso', 'PSO675G0857' => 'pso', 'PSO675G6693' => 'pso', 'QL12p037925' => 'qlo', 'RcHm_v2.0_Chr2g0094131' => 'rch', 'RcHm_v2.0_Chr6g0253771' => 'rch', 'RcHm_v2.0_Chr6g0309471' => 'rch', 'Rhsim06G0061800' => 'rsi', 'Rhsim11G0151300' => 'rsi', 'Rhsim11G0151500' => 'rsi', 'Rhsim11G0152900' => 'rsi', 'Sabra02G0093600' => 'sbr', 'SalBow7G0136' => 'sbo', 'Sc15g0003510' => 'sci', 'Sed0019340' => 'sed', 'SGA_v2.0_scaffold219G42529' => 'sas', 'SGA_v2.0_scaffold28G11825' => 'sas', 'SMO141G0038' => 'smo', 'SMO174G0013' => 'smo', 'SMO174G0098' => 'smo', 'SMO174G0244' => 'smo', 'SMO296G0017' => 'smo', 'SMO296G0027' => 'smo', 'SMO296G0038' => 'smo', 'SMO296G0039' => 'smo', 'SMO353G0413' => 'smo', 'Solyc01g106150.1' => 'sly', 'Solyc04g077920.3' => 'sly', 'Solyc12g088370.2' => 'sly', 'Sopen00g013750' => 'spe', 'Sopen01g048530' => 'spe', 'Sopen04g031520' => 'spe', 'Sopen12g030350' => 'spe', 'Sp1g24010' => 'spa', 'TAR376G0191' => 'tar', 'TAR376G1139' => 'tar', 'TAR381G1089' => 'tar', 'TAR625G0071' => 'tar', 'TAR628G0276' => 'tar', 'TAR628G1204' => 'tar', 'THA.LOC104814188' => 'tha', 'THA.LOC104820516' => 'tha', 'Thecc.02G114600' => 'tca', 'Thecc.02G116500' => 'tca', 'Thecc.08G089800' => 'tca', 'Thhalv10001793m.g' => 'esa', 'Thhalv10007663m.g' => 'esa', 'Thhalv10009506m.g' => 'esa', 'Thhalv10017549m.g' => 'esa', 'Thhalv10017552m.g' => 'esa', 'Thhalv10017670m.g' => 'esa', 'TPR.G33694' => 'tpr', 'TWI12G0489' => 'twi', 'TWI14G0093' => 'twi', 'TWI56G0614' => 'twi', 'TWI74G1357' => 'twi', 'unitig_578.g16147' => 'ugi', 'unitig_8.g4879' => 'ugi', 'vmacro01963' => 'vma', 'vmacro21437' => 'vma', 'VMungo0540G1757' => 'vmu', 'VMungo0647G0922' => 'vmu', 'VMungo1309G1787' => 'vmu', 'Zm00001eb020780' => 'zma', 'Zm00001eb108170' => 'zma', 'Zm00001eb326080' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002133', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002133' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002133', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '314', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002133' ) ), 'genes' => array( 'A07p11580' => 'bna', 'A08p26060' => 'bna', 'A09p38330' => 'bna', 'Aa31sc113G50' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1582' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.183' => 'aag', 'Actinidia00373' => 'ach', 'Actinidia00374' => 'ach', 'Actinidia10193' => 'ach', 'Actinidia22690' => 'ach', 'Actinidia38102' => 'ach', 'Ah.11g039780' => 'amhyb', 'AL1G41310' => 'aly', 'Aqoxy1G02357' => 'aox', 'Aqoxy1G02406' => 'aox', 'Aqoxy1G02502' => 'aox', 'Aqoxy1G02669' => 'aox', 'Aqoxy1G02887' => 'aox', 'Aqoxy1G03040' => 'aox', 'Aqoxy2G02320' => 'aox', 'Aqoxy5G00879' => 'aox', 'Aqoxy5G03178' => 'aox', 'Aqoxy5G03179' => 'aox', 'Aqoxy6G02657' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0MR8KE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60DR5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68HS6I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9ZRQ90' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0RFJ6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C26UD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CH195H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HFKR07' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KXTN9G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VTP83K' => 'arhy', 'AT1G27760' => 'ath', 'ATR0208G038' => 'atr', 'Atru.chr13.822' => 'acertr', 'AUR62022485' => 'cqu', 'AUR62037427' => 'cqu', 'BcaB03g13968' => 'bca', 'BcaB08g34833' => 'bca', 'BcaC01g01568' => 'bca', 'BcaC01g01569' => 'bca', 'BcaC01g01570' => 'bca', 'BcaC05g26776' => 'bca', 'BcaC06g35320' => 'bca', 'BcaNung06154' => 'bca', 'BolC3t19708H' => 'bol', 'BolC5t31367H' => 'bol', 'BolC7t42251H' => 'bol', 'BraA07t28946Z' => 'bra', 'BraA08t34556Z' => 'bra', 'BraA09t39343Z' => 'bra', 'C03p74600' => 'bna', 'C05p26460' => 'bna', 'C07p17460' => 'bna', 'CAN.G107.49' => 'can', 'CAN.G504.35' => 'can', 'CAN.G724.13' => 'can', 'CANSAT25G1442' => 'cansat', 'CANSAT80G1456' => 'cansat', 'CARHR027280' => 'chi', 'Carub.0001s2628' => 'cru', 'Ca_15902_v3' => 'car', 'CBR_g3782' => 'cbr', 'Cc10_g05710' => 'ccan', 'CDE02G2866' => 'cde', 'CDE04G2518' => 'cde', 'Ciclev10001181m.g' => 'ccl', 'CiPaw.07G175700' => 'cil', 'CiPaw.08G049800' => 'cil', 'ClCG05G020570' => 'cla', 'COL.COLO4_28515' => 'col', 'Cpa.g.sc142.18' => 'cpa', 'Cre03.g202500' => 'cre', 'CsaV3_4G035010' => 'csa', 'CSS0013335' => 'camsi', 'CSS0015739' => 'camsi', 'CSS0028243' => 'camsi', 'CSS0038052' => 'camsi', 'DCAR_009883' => 'dca', 'DCAR_013721' => 'dca', 'DCAR_016840' => 'dca', 'DCAR_020073' => 'dca', 'Dinv04580' => 'din', 'Dinv39230' => 'din', 'Dinv44960' => 'din', 'Duzib041G0730' => 'dzi', 'Duzib052G0091' => 'dzi', 'Duzib093G0932' => 'dzi', 'Duzib116G0883' => 'dzi', 'ECA232G3220' => 'eca', 'ECA246G3335' => 'eca', 'EL10Ac1g02389' => 'bvu', 'Eucgr.F02256' => 'egr', 'Eucgr.I01064' => 'egr', 'FAN04G0376' => 'fan', 'FAN15G1432' => 'fan', 'FAN15G1988' => 'fan', 'FAN15G2993' => 'fan', 'FAN18G1869' => 'fan', 'FAN19G2748' => 'fan', 'FAN20G1995' => 'fan', 'FAN20G2377' => 'fan', 'FAN20G3115' => 'fan', 'FAN24G1433' => 'fan', 'FAN24G2013' => 'fan', 'FAN24G2138' => 'fan', 'FAN24G2512' => 'fan', 'FAN26G1173' => 'fan', 'FAN26G3182' => 'fan', 'FAN27G0263' => 'fan', 'FAN27G1056' => 'fan', 'FAN27G1207' => 'fan', 'FAN27G1338' => 'fan', 'FvH4_1g08070' => 'fve', 'FvH4_2g04330' => 'fve', 'FvH4_2g32270' => 'fve', 'FvH4_2g33200' => 'fve', 'FvH4_5g33120' => 'fve', 'Glyma.04G045600' => 'gma', 'Glyma.06G046300' => 'gma', 'Glyma.14G089009' => 'gma', 'Glyma.17G235100' => 'gma', 'Gohir.A02G017701' => 'ghi', 'Gohir.A02G081200' => 'ghi', 'Gohir.A05G209400' => 'ghi', 'Gohir.A05G263101' => 'ghi', 'Gohir.A06G111004' => 'ghi', 'Gohir.A07G032566' => 'ghi', 'Gohir.A07G129601' => 'ghi', 'Gohir.A07G155050' => 'ghi', 'Gohir.A09G170450' => 'ghi', 'Gohir.A10G175251' => 'ghi', 'Gohir.A13G046500' => 'ghi', 'Gohir.A13G189950' => 'ghi', 'Gohir.D02G088900' => 'ghi', 'Gohir.D03G104750' => 'ghi', 'Gohir.D04G071950' => 'ghi', 'Gohir.D05G212800' => 'ghi', 'Gohir.D05G265300' => 'ghi', 'Gohir.D07G033450' => 'ghi', 'Gohir.D08G111408' => 'ghi', 'Gohir.D10G122550' => 'ghi', 'Gohir.D13G042500' => 'ghi', 'Gorai.003G110700' => 'gra', 'Gorai.005G099600' => 'gra', 'Gorai.007G097500' => 'gra', 'Gorai.009G219300' => 'gra', 'Gorai.009G277100' => 'gra', 'Gorai.011G135000' => 'gra', 'Gorai.013G050400' => 'gra', 'GSVIVG01009354001' => 'vvi', 'GSVIVG01009839001' => 'vvi', 'GSVIVG01037843001' => 'vvi', 'HanXRQChr01g0027951' => 'han', 'HanXRQChr06g0175321' => 'han', 'HanXRQChr09g0266701' => 'han', 'Haze_22448' => 'cav', 'Hma1.2p1_0819F.1_g223760' => 'hma', 'Hma1.2p1_1059F.1_g252940' => 'hma', 'HPP92_009539' => 'vpl', 'Hund24035' => 'sun', 'Lalb_Chr02g0144991' => 'lal', 'Lalb_Chr08g0245541' => 'lal', 'Lalb_Chr22g0355651' => 'lal', 'Lalb_Chr23g0267501' => 'lal', 'Lj1g0026971' => 'lja', 'Lj4A70G38' => 'lonja', 'Lj4A759T44' => 'lonja', 'Lj4A759T45' => 'lonja', 'Lj5A219T39' => 'lonja', 'Lj5g0009817' => 'lja', 'Lsat_1_v5_gn_3_33441' => 'lsa', 'Lsat_1_v5_gn_4_131141' => 'lsa', 'Lsat_1_v5_gn_4_93941' => 'lsa', 'Lsat_1_v5_gn_6_112361' => 'lsa', 'Lsat_1_v5_gn_6_23981' => 'lsa', 'Manes.05G181400' => 'mes', 'Manes.18G045800' => 'mes', 'Mapoly0071s0061' => 'mpo', 'MBI16_g01178_MAGBIO' => 'mbi', 'MBI16_g01179_MAGBIO' => 'mbi', 'MBI16_g01180_MAGBIO' => 'mbi', 'MBI18_g24148_MAGBIO' => 'mbi', 'MD00G1169900' => 'mdo', 'MD00G1170100' => 'mdo', 'MD08G1085400' => 'mdo', 'MD08G1085500' => 'mdo', 'MD08G1085800' => 'mdo', 'MD10G1105600' => 'mdo', 'MD10G1151100' => 'mdo', 'MD15G1071000' => 'mdo', 'Medtr3g103090' => 'mtr', 'MELO3C016813.2' => 'cme', 'Migut.N01141' => 'egut', 'Migut.N02776' => 'egut', 'MSTRG.22223' => 'ama', 'MSTRG.24371' => 'ama', 'MSTRG.27763' => 'ama', 'Nitab4.5_0000068g0520' => 'nta', 'Nitab4.5_0000164g0130' => 'nta', 'Nitab4.5_0000569g0190' => 'nta', 'Nitab4.5_0001298g0040' => 'nta', 'Nitab4.5_0002314g0110' => 'nta', 'Nitab4.5_0002968g0020' => 'nta', 'Nitab4.5_0003803g0030' => 'nta', 'Nitab4.5_0005301g0030' => 'nta', 'Nn1g03720' => 'nnu', 'Nn1g04581' => 'nnu', 'Nn2g15136' => 'nnu', 'Nn5g30562' => 'nnu', 'Nn8g39787' => 'nnu', 'Oeu037279.1' => 'oeu', 'Oeu037500.1' => 'oeu', 'Oeu048578.1' => 'oeu', 'Os02g0219000' => 'osa', 'Os02g0219050' => 'osa', 'Os03g0448700' => 'osa', 'Os07g0588000' => 'osa', 'Os08g0491400' => 'osa', 'Peaxi162Scf00003g04822' => 'pax', 'Peaxi162Scf00017g02838' => 'pax', 'Peaxi162Scf00081g01710' => 'pax', 'Peaxi162Scf00102g01358' => 'pax', 'Peaxi162Scf00179g00010' => 'pax', 'Peaxi162Scf00179g00011' => 'pax', 'Peaxi162Scf00267g00614' => 'pax', 'PGR031G1293' => 'pgr', 'PGR120G0002' => 'pgr', 'PGR142G2399' => 'pgr', 'PGSC0003DMG400010671' => 'stu', 'PGSC0003DMG400011546' => 'stu', 'PGSC0003DMG400021507' => 'stu', 'Phvul.001G027600' => 'pvu', 'Phvul.009G071500' => 'pvu', 'Potri.002G119100' => 'ptr', 'Potri.009G088700' => 'ptr', 'Potri.014G016800' => 'ptr', 'Pp3c11_19710' => 'ppa', 'Pp3c20_9970' => 'ppa', 'Pp3c23_4310' => 'ppa', 'Prupe.1G423700' => 'ppe', 'Prupe.3G276000' => 'ppe', 'Prupe.8G144400' => 'ppe', 'Psat5g039040' => 'psa', 'PSO017G4718' => 'pso', 'PSO170G0233' => 'pso', 'PSO541G1264' => 'pso', 'PSO675G0857' => 'pso', 'PSO675G6693' => 'pso', 'QL12p037925' => 'qlo', 'RcHm_v2.0_Chr2g0094131' => 'rch', 'RcHm_v2.0_Chr6g0253771' => 'rch', 'RcHm_v2.0_Chr6g0309471' => 'rch', 'Rhsim06G0061800' => 'rsi', 'Rhsim11G0151300' => 'rsi', 'Rhsim11G0151500' => 'rsi', 'Rhsim11G0152900' => 'rsi', 'Sabra02G0093600' => 'sbr', 'SalBow7G0136' => 'sbo', 'Sc15g0003510' => 'sci', 'Sed0019340' => 'sed', 'SGA_v2.0_scaffold219G42529' => 'sas', 'SGA_v2.0_scaffold28G11825' => 'sas', 'SMO141G0038' => 'smo', 'SMO174G0013' => 'smo', 'SMO174G0098' => 'smo', 'SMO174G0244' => 'smo', 'SMO296G0017' => 'smo', 'SMO296G0027' => 'smo', 'SMO296G0038' => 'smo', 'SMO296G0039' => 'smo', 'SMO353G0413' => 'smo', 'Solyc01g106150.1' => 'sly', 'Solyc04g077920.3' => 'sly', 'Solyc12g088370.2' => 'sly', 'Sopen00g013750' => 'spe', 'Sopen01g048530' => 'spe', 'Sopen04g031520' => 'spe', 'Sopen12g030350' => 'spe', 'Sp1g24010' => 'spa', 'TAR376G0191' => 'tar', 'TAR376G1139' => 'tar', 'TAR381G1089' => 'tar', 'TAR625G0071' => 'tar', 'TAR628G0276' => 'tar', 'TAR628G1204' => 'tar', 'THA.LOC104814188' => 'tha', 'THA.LOC104820516' => 'tha', 'Thecc.02G114600' => 'tca', 'Thecc.02G116500' => 'tca', 'Thecc.08G089800' => 'tca', 'Thhalv10001793m.g' => 'esa', 'Thhalv10007663m.g' => 'esa', 'Thhalv10009506m.g' => 'esa', 'Thhalv10017549m.g' => 'esa', 'Thhalv10017552m.g' => 'esa', 'Thhalv10017670m.g' => 'esa', 'TPR.G33694' => 'tpr', 'TWI12G0489' => 'twi', 'TWI14G0093' => 'twi', 'TWI56G0614' => 'twi', 'TWI74G1357' => 'twi', 'unitig_578.g16147' => 'ugi', 'unitig_8.g4879' => 'ugi', 'vmacro01963' => 'vma', 'vmacro21437' => 'vma', 'VMungo0540G1757' => 'vmu', 'VMungo0647G0922' => 'vmu', 'VMungo1309G1787' => 'vmu', 'Zm00001eb020780' => 'zma', 'Zm00001eb108170' => 'zma', 'Zm00001eb326080' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002133' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002133' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002133' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002133' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151