Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002041', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '325', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p11920' => 'bna', 'A03p18790' => 'bna', 'A05p11960' => 'bna', 'A06p47010' => 'bna', 'A08p14660' => 'bna', 'Aa31LG6G2600' => 'aar', 'Aa31LG9G13500' => 'aar', 'Aa31LG9G8510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1522' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.212' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.237' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.252' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.253' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.861' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.862' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1717' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2843' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3186' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3880' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.617' => 'aag', 'Actinidia13063' => 'ach', 'Actinidia15543' => 'ach', 'Actinidia15544' => 'ach', 'Actinidia17095' => 'ach', 'Actinidia31358' => 'ach', 'Actinidia31359' => 'ach', 'Actinidia34698' => 'ach', 'Ah.06g191600' => 'amhyb', 'Ah.09g231450' => 'amhyb', 'Ah.14g084970' => 'amhyb', 'Ah.15g091870' => 'amhyb', 'AL4G29240' => 'aly', 'AL7G33660' => 'aly', 'AL8G14880' => 'aly', 'Aqoxy1G01359' => 'aox', 'Aqoxy5G00942' => 'aox', 'arahy.Tifrunner.gnm1.ann1.KQJ89G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9B1MS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SABB4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WKJE7A' => 'arhy', 'AT2G33570' => 'ath', 'AT3G07380' => 'ath', 'AT3G60990' => 'ath', 'AT4G20170' => 'ath', 'AT5G44670' => 'ath', 'AT5G48190' => 'ath', 'ATR0794G071' => 'atr', 'Atru.chr10.240' => 'acertr', 'Atru.chr13.25' => 'acertr', 'AUR62025204' => 'cqu', 'AUR62028971' => 'cqu', 'AUR62040991' => 'cqu', 'AUR62040992' => 'cqu', 'AUR62040993' => 'cqu', 'AUR62042812' => 'cqu', 'AUR62042813' => 'cqu', 'AUR62042978' => 'cqu', 'BcaB01g03930' => 'bca', 'BcaB02g10580' => 'bca', 'BcaB03g11660' => 'bca', 'BcaC01g00658' => 'bca', 'BcaC01g05835' => 'bca', 'BcaC02g11441' => 'bca', 'BcaC06g31598' => 'bca', 'BcaC06g34525' => 'bca', 'BcaC09g51331' => 'bca', 'BcaNung03711' => 'bca', 'BolC1t01380H' => 'bol', 'BolC3t14578H' => 'bol', 'BolC3t20563H' => 'bol', 'BolC4t23122H' => 'bol', 'BolC7t43287H' => 'bol', 'BraA01t01134Z' => 'bra', 'BraA03t11139Z' => 'bra', 'BraA05t20139Z' => 'bra', 'BraA06t27574Z' => 'bra', 'BraA08t33454Z' => 'bra', 'C01p14160' => 'bna', 'C03p21950' => 'bna', 'C03p82820' => 'bna', 'C04p15510' => 'bna', 'C07p27560' => 'bna', 'CAN.G105.24' => 'can', 'CAN.G1330.29' => 'can', 'CAN.G241.3' => 'can', 'CAN.G809.15' => 'can', 'CANSAT35G0947' => 'cansat', 'CARHR127590' => 'chi', 'CARHR178220' => 'chi', 'CARHR227000' => 'chi', 'Carub.0004s1520' => 'cru', 'Carub.0007s2096' => 'cru', 'Carub.0008s0359' => 'cru', 'Ca_02414_v3' => 'car', 'Ca_22532_v3' => 'car', 'Cc09_g04650' => 'ccan', 'CDE01G0512' => 'cde', 'CDE05G3310' => 'cde', 'CDE06G0911' => 'cde', 'CDE08G1193' => 'cde', 'Cfa001160' => 'cfa', 'Cfa014162' => 'cfa', 'Ciclev10003494m.g' => 'ccl', 'Ciclev10014882m.g' => 'ccl', 'CiPaw.07G130600' => 'cil', 'CiPaw.09G140400' => 'cil', 'CiPaw.10G108000' => 'cil', 'ClCG01G025940' => 'cla', 'COL.COLO4_28196' => 'col', 'COL.COLO4_28201' => 'col', 'Cpa.g.sc1291.2' => 'cpa', 'Cpa.g.sc36.102' => 'cpa', 'CsaV3_6G053150' => 'csa', 'CSS0006084' => 'camsi', 'CSS0007815' => 'camsi', 'CSS0039929' => 'camsi', 'DCAR_001257' => 'dca', 'DCAR_003734' => 'dca', 'Dinv05513' => 'din', 'Dinv17884' => 'din', 'Dinv19792' => 'din', 'Duzib093G2162' => 'dzi', 'Duzib248G0909' => 'dzi', 'ECA232G0028' => 'eca', 'ECA246G0091' => 'eca', 'EL10Ac7g17306' => 'bvu', 'EL10Ac7g17307' => 'bvu', 'EL10Ac8g19100' => 'bvu', 'Eucgr.E04328' => 'egr', 'Eucgr.F03619' => 'egr', 'FAN04G3084' => 'fan', 'FAN08G1261' => 'fan', 'FAN11G2699' => 'fan', 'FAN13G0686' => 'fan', 'FAN16G3010' => 'fan', 'FAN18G0987' => 'fan', 'FAN21G2788' => 'fan', 'FAN25G3375' => 'fan', 'FvH4_3g13330' => 'fve', 'FvH4_5g26560' => 'fve', 'Glyma.08G267800' => 'gma', 'Glyma.09G047900' => 'gma', 'Glyma.15G155300' => 'gma', 'Glyma.16G094100' => 'gma', 'Gohir.A09G123700' => 'ghi', 'Gohir.A11G311800' => 'ghi', 'Gohir.A12G051000' => 'ghi', 'Gohir.D11G328400' => 'ghi', 'Gohir.D12G049200' => 'ghi', 'Gorai.006G138000' => 'gra', 'Gorai.007G359700' => 'gra', 'Gorai.008G052100' => 'gra', 'GSVIVG01010061001' => 'vvi', 'GSVIVG01013454001' => 'vvi', 'HanXRQChr07g0193471' => 'han', 'HanXRQChr09g0257671' => 'han', 'Haze_05190' => 'cav', 'Haze_22884' => 'cav', 'Hma1.2p1_0166F.1_g073530' => 'hma', 'Hma1.2p1_0598F.1_g186720' => 'hma', 'Hma1.2p1_0890F.1_g232990' => 'hma', 'HPP92_003840' => 'vpl', 'HPP92_003841' => 'vpl', 'HPP92_003844' => 'vpl', 'HPP92_010217' => 'vpl', 'HPP92_023792' => 'vpl', 'Hund08737' => 'sun', 'Hund26023' => 'sun', 'Lalb_Chr15g0083641' => 'lal', 'Lalb_Chr18g0051901' => 'lal', 'Lalb_Chr20g0114371' => 'lal', 'Lj1A1152T40' => 'lonja', 'Lj2C341G8' => 'lonja', 'Lj6g0005879' => 'lja', 'Lsat_1_v5_gn_3_104341' => 'lsa', 'Lsat_1_v5_gn_8_107021' => 'lsa', 'Manes.03G072700' => 'mes', 'Manes.05G130300' => 'mes', 'Manes.16G059900' => 'mes', 'Mapoly0001s0176' => 'mpo', 'Mapoly0027s0174' => 'mpo', 'Mapoly0042s0120' => 'mpo', 'Mapoly0045s0137' => 'mpo', 'Mapoly0045s0145' => 'mpo', 'Mapoly0068s0056' => 'mpo', 'Mapoly0089s0060' => 'mpo', 'Mapoly0112s0054' => 'mpo', 'Mapoly0120s0052' => 'mpo', 'MBI02_g17884_MAGBIO' => 'mbi', 'MBI04_g23327_MAGBIO' => 'mbi', 'MD05G1242800' => 'mdo', 'MD10G1224800' => 'mdo', 'Medtr2g437660' => 'mtr', 'Medtr8g070700' => 'mtr', 'MELO3C006997.2' => 'cme', 'Migut.C00337' => 'egut', 'Migut.M02034' => 'egut', 'MSTRG.24894' => 'ama', 'Nitab4.5_0000614g0050' => 'nta', 'Nitab4.5_0001299g0090' => 'nta', 'Nitab4.5_0001815g0050' => 'nta', 'Nitab4.5_0009514g0060' => 'nta', 'Nitab4.5_0011054g0020' => 'nta', 'Nn2g10642' => 'nnu', 'Nn5g31076' => 'nnu', 'Nn5g31119' => 'nnu', 'Nn6g31573' => 'nnu', 'Nn6g33856' => 'nnu', 'Nn7g36409' => 'nnu', 'Nn7g38422' => 'nnu', 'Oeu001580.1' => 'oeu', 'Oeu005125.1' => 'oeu', 'Oeu013507.2' => 'oeu', 'Oeu028735.1' => 'oeu', 'Oeu052923.1' => 'oeu', 'Os02g0712500' => 'osa', 'Os06g0328800' => 'osa', 'Os06g0624700' => 'osa', 'Peaxi162Scf00313g00055' => 'pax', 'Peaxi162Scf00385g00108' => 'pax', 'PGR031G3161' => 'pgr', 'PGR042G3430' => 'pgr', 'PGSC0003DMG400009930' => 'stu', 'PGSC0003DMG400011286' => 'stu', 'PGSC0003DMG400013632' => 'stu', 'Phvul.003G275200' => 'pvu', 'Phvul.009G244900' => 'pvu', 'Potri.001G074600' => 'ptr', 'Potri.003G156600' => 'ptr', 'Potri.005G258900' => 'ptr', 'Pp3c10_23600' => 'ppa', 'Pp3c13_10860' => 'ppa', 'Pp3c17_15940' => 'ppa', 'Pp3c1_12470' => 'ppa', 'Pp3c21_19210' => 'ppa', 'Pp3c22_21200' => 'ppa', 'Pp3c25_6770' => 'ppa', 'Pp3c2_7810' => 'ppa', 'Pp3c3_33280' => 'ppa', 'Pp3c3_35060' => 'ppa', 'Pp3c4_10730' => 'ppa', 'Pp3c8_1720' => 'ppa', 'Pp3c8_1800' => 'ppa', 'Prupe.4G120600' => 'ppe', 'Prupe.5G001800' => 'ppe', 'Psat0s2609g0040' => 'psa', 'Psat1g151680' => 'psa', 'PSO017G1568' => 'pso', 'PSO017G5837' => 'pso', 'PSO170G4079' => 'pso', 'PSO541G4665' => 'pso', 'PSO675G7483' => 'pso', 'QL02p016151' => 'qlo', 'QL11p010844' => 'qlo', 'RcHm_v2.0_Chr5g0021801' => 'rch', 'RcHm_v2.0_Chr7g0217441' => 'rch', 'Rhsim02G0171400' => 'rsi', 'Rhsim06G0001200' => 'rsi', 'Rhsim13G0136100' => 'rsi', 'Sabra01G0052700' => 'sbr', 'Sabra03G0113600' => 'sbr', 'Sabra05G0200500' => 'sbr', 'SalBow7G2352' => 'sbo', 'SalBow8G0237' => 'sbo', 'SalBow8G0944' => 'sbo', 'Sc17g0004320' => 'sci', 'Sc17g0004330' => 'sci', 'Sc17g0004350' => 'sci', 'Sc24g0002830' => 'sci', 'Sed0009513' => 'sed', 'SEGI_14293' => 'sgi', 'SEGI_17172' => 'sgi', 'SGA_v2.0_scaffold161G37848' => 'sas', 'SGA_v2.0_scaffold26G11286' => 'sas', 'SGA_v2.0_scaffold423G51453' => 'sas', 'SHI30729' => 'shi', 'SHI32708' => 'shi', 'SMO351G0529' => 'smo', 'SMO364G0153' => 'smo', 'Solyc02g082140.3' => 'sly', 'Solyc04g082950.4' => 'sly', 'Solyc05g015790.2' => 'sly', 'Solyc10g005200.3' => 'sly', 'Sopen02g026800' => 'spe', 'Sopen04g036580' => 'spe', 'Sopen10g001190' => 'spe', 'Sp2g09480' => 'spa', 'Sp4g15910' => 'spa', 'Sp7g18600' => 'spa', 'TAR381G0011' => 'tar', 'TAR381G0624' => 'tar', 'TAR626G1872' => 'tar', 'TAR627G0873' => 'tar', 'TAR629G1088' => 'tar', 'THA.LOC104806225' => 'tha', 'THA.LOC104813216' => 'tha', 'THA.LOC104824814' => 'tha', 'THA.LOC104825419' => 'tha', 'Thecc.02G001300' => 'tca', 'Thecc.05G159800' => 'tca', 'Thhalv10000855m.g' => 'esa', 'Thhalv10016550m.g' => 'esa', 'Thhalv10024965m.g' => 'esa', 'TPR.G19838' => 'tpr', 'TPR.G28838' => 'tpr', 'TPR.G8447' => 'tpr', 'TWI38G0125' => 'twi', 'TWI63G0426' => 'twi', 'unitig_26.g9852' => 'ugi', 'unitig_46.g17966' => 'ugi', 'unitig_749.g13861' => 'ugi', 'vmacro03572' => 'vma', 'vmacro11019' => 'vma', 'vmacro21739' => 'vma', 'VMungo0251G0699' => 'vmu', 'VMungo1309G0920' => 'vmu', 'Zm00001eb252530' => 'zma', 'Zm00001eb281360' => 'zma', 'Zm00001eb387850' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002041', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002041' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002041', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '325', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002041' ) ), 'genes' => array( 'A01p11920' => 'bna', 'A03p18790' => 'bna', 'A05p11960' => 'bna', 'A06p47010' => 'bna', 'A08p14660' => 'bna', 'Aa31LG6G2600' => 'aar', 'Aa31LG9G13500' => 'aar', 'Aa31LG9G8510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1522' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.212' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.237' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.252' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.253' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.861' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.862' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1717' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2843' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3186' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3880' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.617' => 'aag', 'Actinidia13063' => 'ach', 'Actinidia15543' => 'ach', 'Actinidia15544' => 'ach', 'Actinidia17095' => 'ach', 'Actinidia31358' => 'ach', 'Actinidia31359' => 'ach', 'Actinidia34698' => 'ach', 'Ah.06g191600' => 'amhyb', 'Ah.09g231450' => 'amhyb', 'Ah.14g084970' => 'amhyb', 'Ah.15g091870' => 'amhyb', 'AL4G29240' => 'aly', 'AL7G33660' => 'aly', 'AL8G14880' => 'aly', 'Aqoxy1G01359' => 'aox', 'Aqoxy5G00942' => 'aox', 'arahy.Tifrunner.gnm1.ann1.KQJ89G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9B1MS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SABB4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WKJE7A' => 'arhy', 'AT2G33570' => 'ath', 'AT3G07380' => 'ath', 'AT3G60990' => 'ath', 'AT4G20170' => 'ath', 'AT5G44670' => 'ath', 'AT5G48190' => 'ath', 'ATR0794G071' => 'atr', 'Atru.chr10.240' => 'acertr', 'Atru.chr13.25' => 'acertr', 'AUR62025204' => 'cqu', 'AUR62028971' => 'cqu', 'AUR62040991' => 'cqu', 'AUR62040992' => 'cqu', 'AUR62040993' => 'cqu', 'AUR62042812' => 'cqu', 'AUR62042813' => 'cqu', 'AUR62042978' => 'cqu', 'BcaB01g03930' => 'bca', 'BcaB02g10580' => 'bca', 'BcaB03g11660' => 'bca', 'BcaC01g00658' => 'bca', 'BcaC01g05835' => 'bca', 'BcaC02g11441' => 'bca', 'BcaC06g31598' => 'bca', 'BcaC06g34525' => 'bca', 'BcaC09g51331' => 'bca', 'BcaNung03711' => 'bca', 'BolC1t01380H' => 'bol', 'BolC3t14578H' => 'bol', 'BolC3t20563H' => 'bol', 'BolC4t23122H' => 'bol', 'BolC7t43287H' => 'bol', 'BraA01t01134Z' => 'bra', 'BraA03t11139Z' => 'bra', 'BraA05t20139Z' => 'bra', 'BraA06t27574Z' => 'bra', 'BraA08t33454Z' => 'bra', 'C01p14160' => 'bna', 'C03p21950' => 'bna', 'C03p82820' => 'bna', 'C04p15510' => 'bna', 'C07p27560' => 'bna', 'CAN.G105.24' => 'can', 'CAN.G1330.29' => 'can', 'CAN.G241.3' => 'can', 'CAN.G809.15' => 'can', 'CANSAT35G0947' => 'cansat', 'CARHR127590' => 'chi', 'CARHR178220' => 'chi', 'CARHR227000' => 'chi', 'Carub.0004s1520' => 'cru', 'Carub.0007s2096' => 'cru', 'Carub.0008s0359' => 'cru', 'Ca_02414_v3' => 'car', 'Ca_22532_v3' => 'car', 'Cc09_g04650' => 'ccan', 'CDE01G0512' => 'cde', 'CDE05G3310' => 'cde', 'CDE06G0911' => 'cde', 'CDE08G1193' => 'cde', 'Cfa001160' => 'cfa', 'Cfa014162' => 'cfa', 'Ciclev10003494m.g' => 'ccl', 'Ciclev10014882m.g' => 'ccl', 'CiPaw.07G130600' => 'cil', 'CiPaw.09G140400' => 'cil', 'CiPaw.10G108000' => 'cil', 'ClCG01G025940' => 'cla', 'COL.COLO4_28196' => 'col', 'COL.COLO4_28201' => 'col', 'Cpa.g.sc1291.2' => 'cpa', 'Cpa.g.sc36.102' => 'cpa', 'CsaV3_6G053150' => 'csa', 'CSS0006084' => 'camsi', 'CSS0007815' => 'camsi', 'CSS0039929' => 'camsi', 'DCAR_001257' => 'dca', 'DCAR_003734' => 'dca', 'Dinv05513' => 'din', 'Dinv17884' => 'din', 'Dinv19792' => 'din', 'Duzib093G2162' => 'dzi', 'Duzib248G0909' => 'dzi', 'ECA232G0028' => 'eca', 'ECA246G0091' => 'eca', 'EL10Ac7g17306' => 'bvu', 'EL10Ac7g17307' => 'bvu', 'EL10Ac8g19100' => 'bvu', 'Eucgr.E04328' => 'egr', 'Eucgr.F03619' => 'egr', 'FAN04G3084' => 'fan', 'FAN08G1261' => 'fan', 'FAN11G2699' => 'fan', 'FAN13G0686' => 'fan', 'FAN16G3010' => 'fan', 'FAN18G0987' => 'fan', 'FAN21G2788' => 'fan', 'FAN25G3375' => 'fan', 'FvH4_3g13330' => 'fve', 'FvH4_5g26560' => 'fve', 'Glyma.08G267800' => 'gma', 'Glyma.09G047900' => 'gma', 'Glyma.15G155300' => 'gma', 'Glyma.16G094100' => 'gma', 'Gohir.A09G123700' => 'ghi', 'Gohir.A11G311800' => 'ghi', 'Gohir.A12G051000' => 'ghi', 'Gohir.D11G328400' => 'ghi', 'Gohir.D12G049200' => 'ghi', 'Gorai.006G138000' => 'gra', 'Gorai.007G359700' => 'gra', 'Gorai.008G052100' => 'gra', 'GSVIVG01010061001' => 'vvi', 'GSVIVG01013454001' => 'vvi', 'HanXRQChr07g0193471' => 'han', 'HanXRQChr09g0257671' => 'han', 'Haze_05190' => 'cav', 'Haze_22884' => 'cav', 'Hma1.2p1_0166F.1_g073530' => 'hma', 'Hma1.2p1_0598F.1_g186720' => 'hma', 'Hma1.2p1_0890F.1_g232990' => 'hma', 'HPP92_003840' => 'vpl', 'HPP92_003841' => 'vpl', 'HPP92_003844' => 'vpl', 'HPP92_010217' => 'vpl', 'HPP92_023792' => 'vpl', 'Hund08737' => 'sun', 'Hund26023' => 'sun', 'Lalb_Chr15g0083641' => 'lal', 'Lalb_Chr18g0051901' => 'lal', 'Lalb_Chr20g0114371' => 'lal', 'Lj1A1152T40' => 'lonja', 'Lj2C341G8' => 'lonja', 'Lj6g0005879' => 'lja', 'Lsat_1_v5_gn_3_104341' => 'lsa', 'Lsat_1_v5_gn_8_107021' => 'lsa', 'Manes.03G072700' => 'mes', 'Manes.05G130300' => 'mes', 'Manes.16G059900' => 'mes', 'Mapoly0001s0176' => 'mpo', 'Mapoly0027s0174' => 'mpo', 'Mapoly0042s0120' => 'mpo', 'Mapoly0045s0137' => 'mpo', 'Mapoly0045s0145' => 'mpo', 'Mapoly0068s0056' => 'mpo', 'Mapoly0089s0060' => 'mpo', 'Mapoly0112s0054' => 'mpo', 'Mapoly0120s0052' => 'mpo', 'MBI02_g17884_MAGBIO' => 'mbi', 'MBI04_g23327_MAGBIO' => 'mbi', 'MD05G1242800' => 'mdo', 'MD10G1224800' => 'mdo', 'Medtr2g437660' => 'mtr', 'Medtr8g070700' => 'mtr', 'MELO3C006997.2' => 'cme', 'Migut.C00337' => 'egut', 'Migut.M02034' => 'egut', 'MSTRG.24894' => 'ama', 'Nitab4.5_0000614g0050' => 'nta', 'Nitab4.5_0001299g0090' => 'nta', 'Nitab4.5_0001815g0050' => 'nta', 'Nitab4.5_0009514g0060' => 'nta', 'Nitab4.5_0011054g0020' => 'nta', 'Nn2g10642' => 'nnu', 'Nn5g31076' => 'nnu', 'Nn5g31119' => 'nnu', 'Nn6g31573' => 'nnu', 'Nn6g33856' => 'nnu', 'Nn7g36409' => 'nnu', 'Nn7g38422' => 'nnu', 'Oeu001580.1' => 'oeu', 'Oeu005125.1' => 'oeu', 'Oeu013507.2' => 'oeu', 'Oeu028735.1' => 'oeu', 'Oeu052923.1' => 'oeu', 'Os02g0712500' => 'osa', 'Os06g0328800' => 'osa', 'Os06g0624700' => 'osa', 'Peaxi162Scf00313g00055' => 'pax', 'Peaxi162Scf00385g00108' => 'pax', 'PGR031G3161' => 'pgr', 'PGR042G3430' => 'pgr', 'PGSC0003DMG400009930' => 'stu', 'PGSC0003DMG400011286' => 'stu', 'PGSC0003DMG400013632' => 'stu', 'Phvul.003G275200' => 'pvu', 'Phvul.009G244900' => 'pvu', 'Potri.001G074600' => 'ptr', 'Potri.003G156600' => 'ptr', 'Potri.005G258900' => 'ptr', 'Pp3c10_23600' => 'ppa', 'Pp3c13_10860' => 'ppa', 'Pp3c17_15940' => 'ppa', 'Pp3c1_12470' => 'ppa', 'Pp3c21_19210' => 'ppa', 'Pp3c22_21200' => 'ppa', 'Pp3c25_6770' => 'ppa', 'Pp3c2_7810' => 'ppa', 'Pp3c3_33280' => 'ppa', 'Pp3c3_35060' => 'ppa', 'Pp3c4_10730' => 'ppa', 'Pp3c8_1720' => 'ppa', 'Pp3c8_1800' => 'ppa', 'Prupe.4G120600' => 'ppe', 'Prupe.5G001800' => 'ppe', 'Psat0s2609g0040' => 'psa', 'Psat1g151680' => 'psa', 'PSO017G1568' => 'pso', 'PSO017G5837' => 'pso', 'PSO170G4079' => 'pso', 'PSO541G4665' => 'pso', 'PSO675G7483' => 'pso', 'QL02p016151' => 'qlo', 'QL11p010844' => 'qlo', 'RcHm_v2.0_Chr5g0021801' => 'rch', 'RcHm_v2.0_Chr7g0217441' => 'rch', 'Rhsim02G0171400' => 'rsi', 'Rhsim06G0001200' => 'rsi', 'Rhsim13G0136100' => 'rsi', 'Sabra01G0052700' => 'sbr', 'Sabra03G0113600' => 'sbr', 'Sabra05G0200500' => 'sbr', 'SalBow7G2352' => 'sbo', 'SalBow8G0237' => 'sbo', 'SalBow8G0944' => 'sbo', 'Sc17g0004320' => 'sci', 'Sc17g0004330' => 'sci', 'Sc17g0004350' => 'sci', 'Sc24g0002830' => 'sci', 'Sed0009513' => 'sed', 'SEGI_14293' => 'sgi', 'SEGI_17172' => 'sgi', 'SGA_v2.0_scaffold161G37848' => 'sas', 'SGA_v2.0_scaffold26G11286' => 'sas', 'SGA_v2.0_scaffold423G51453' => 'sas', 'SHI30729' => 'shi', 'SHI32708' => 'shi', 'SMO351G0529' => 'smo', 'SMO364G0153' => 'smo', 'Solyc02g082140.3' => 'sly', 'Solyc04g082950.4' => 'sly', 'Solyc05g015790.2' => 'sly', 'Solyc10g005200.3' => 'sly', 'Sopen02g026800' => 'spe', 'Sopen04g036580' => 'spe', 'Sopen10g001190' => 'spe', 'Sp2g09480' => 'spa', 'Sp4g15910' => 'spa', 'Sp7g18600' => 'spa', 'TAR381G0011' => 'tar', 'TAR381G0624' => 'tar', 'TAR626G1872' => 'tar', 'TAR627G0873' => 'tar', 'TAR629G1088' => 'tar', 'THA.LOC104806225' => 'tha', 'THA.LOC104813216' => 'tha', 'THA.LOC104824814' => 'tha', 'THA.LOC104825419' => 'tha', 'Thecc.02G001300' => 'tca', 'Thecc.05G159800' => 'tca', 'Thhalv10000855m.g' => 'esa', 'Thhalv10016550m.g' => 'esa', 'Thhalv10024965m.g' => 'esa', 'TPR.G19838' => 'tpr', 'TPR.G28838' => 'tpr', 'TPR.G8447' => 'tpr', 'TWI38G0125' => 'twi', 'TWI63G0426' => 'twi', 'unitig_26.g9852' => 'ugi', 'unitig_46.g17966' => 'ugi', 'unitig_749.g13861' => 'ugi', 'vmacro03572' => 'vma', 'vmacro11019' => 'vma', 'vmacro21739' => 'vma', 'VMungo0251G0699' => 'vmu', 'VMungo1309G0920' => 'vmu', 'Zm00001eb252530' => 'zma', 'Zm00001eb281360' => 'zma', 'Zm00001eb387850' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002041' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002041' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002041' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002041' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002041', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '325', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p11920' => 'bna', 'A03p18790' => 'bna', 'A05p11960' => 'bna', 'A06p47010' => 'bna', 'A08p14660' => 'bna', 'Aa31LG6G2600' => 'aar', 'Aa31LG9G13500' => 'aar', 'Aa31LG9G8510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1522' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.212' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.237' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.252' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.253' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.861' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.862' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1717' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2843' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3186' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3880' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.617' => 'aag', 'Actinidia13063' => 'ach', 'Actinidia15543' => 'ach', 'Actinidia15544' => 'ach', 'Actinidia17095' => 'ach', 'Actinidia31358' => 'ach', 'Actinidia31359' => 'ach', 'Actinidia34698' => 'ach', 'Ah.06g191600' => 'amhyb', 'Ah.09g231450' => 'amhyb', 'Ah.14g084970' => 'amhyb', 'Ah.15g091870' => 'amhyb', 'AL4G29240' => 'aly', 'AL7G33660' => 'aly', 'AL8G14880' => 'aly', 'Aqoxy1G01359' => 'aox', 'Aqoxy5G00942' => 'aox', 'arahy.Tifrunner.gnm1.ann1.KQJ89G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9B1MS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SABB4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WKJE7A' => 'arhy', 'AT2G33570' => 'ath', 'AT3G07380' => 'ath', 'AT3G60990' => 'ath', 'AT4G20170' => 'ath', 'AT5G44670' => 'ath', 'AT5G48190' => 'ath', 'ATR0794G071' => 'atr', 'Atru.chr10.240' => 'acertr', 'Atru.chr13.25' => 'acertr', 'AUR62025204' => 'cqu', 'AUR62028971' => 'cqu', 'AUR62040991' => 'cqu', 'AUR62040992' => 'cqu', 'AUR62040993' => 'cqu', 'AUR62042812' => 'cqu', 'AUR62042813' => 'cqu', 'AUR62042978' => 'cqu', 'BcaB01g03930' => 'bca', 'BcaB02g10580' => 'bca', 'BcaB03g11660' => 'bca', 'BcaC01g00658' => 'bca', 'BcaC01g05835' => 'bca', 'BcaC02g11441' => 'bca', 'BcaC06g31598' => 'bca', 'BcaC06g34525' => 'bca', 'BcaC09g51331' => 'bca', 'BcaNung03711' => 'bca', 'BolC1t01380H' => 'bol', 'BolC3t14578H' => 'bol', 'BolC3t20563H' => 'bol', 'BolC4t23122H' => 'bol', 'BolC7t43287H' => 'bol', 'BraA01t01134Z' => 'bra', 'BraA03t11139Z' => 'bra', 'BraA05t20139Z' => 'bra', 'BraA06t27574Z' => 'bra', 'BraA08t33454Z' => 'bra', 'C01p14160' => 'bna', 'C03p21950' => 'bna', 'C03p82820' => 'bna', 'C04p15510' => 'bna', 'C07p27560' => 'bna', 'CAN.G105.24' => 'can', 'CAN.G1330.29' => 'can', 'CAN.G241.3' => 'can', 'CAN.G809.15' => 'can', 'CANSAT35G0947' => 'cansat', 'CARHR127590' => 'chi', 'CARHR178220' => 'chi', 'CARHR227000' => 'chi', 'Carub.0004s1520' => 'cru', 'Carub.0007s2096' => 'cru', 'Carub.0008s0359' => 'cru', 'Ca_02414_v3' => 'car', 'Ca_22532_v3' => 'car', 'Cc09_g04650' => 'ccan', 'CDE01G0512' => 'cde', 'CDE05G3310' => 'cde', 'CDE06G0911' => 'cde', 'CDE08G1193' => 'cde', 'Cfa001160' => 'cfa', 'Cfa014162' => 'cfa', 'Ciclev10003494m.g' => 'ccl', 'Ciclev10014882m.g' => 'ccl', 'CiPaw.07G130600' => 'cil', 'CiPaw.09G140400' => 'cil', 'CiPaw.10G108000' => 'cil', 'ClCG01G025940' => 'cla', 'COL.COLO4_28196' => 'col', 'COL.COLO4_28201' => 'col', 'Cpa.g.sc1291.2' => 'cpa', 'Cpa.g.sc36.102' => 'cpa', 'CsaV3_6G053150' => 'csa', 'CSS0006084' => 'camsi', 'CSS0007815' => 'camsi', 'CSS0039929' => 'camsi', 'DCAR_001257' => 'dca', 'DCAR_003734' => 'dca', 'Dinv05513' => 'din', 'Dinv17884' => 'din', 'Dinv19792' => 'din', 'Duzib093G2162' => 'dzi', 'Duzib248G0909' => 'dzi', 'ECA232G0028' => 'eca', 'ECA246G0091' => 'eca', 'EL10Ac7g17306' => 'bvu', 'EL10Ac7g17307' => 'bvu', 'EL10Ac8g19100' => 'bvu', 'Eucgr.E04328' => 'egr', 'Eucgr.F03619' => 'egr', 'FAN04G3084' => 'fan', 'FAN08G1261' => 'fan', 'FAN11G2699' => 'fan', 'FAN13G0686' => 'fan', 'FAN16G3010' => 'fan', 'FAN18G0987' => 'fan', 'FAN21G2788' => 'fan', 'FAN25G3375' => 'fan', 'FvH4_3g13330' => 'fve', 'FvH4_5g26560' => 'fve', 'Glyma.08G267800' => 'gma', 'Glyma.09G047900' => 'gma', 'Glyma.15G155300' => 'gma', 'Glyma.16G094100' => 'gma', 'Gohir.A09G123700' => 'ghi', 'Gohir.A11G311800' => 'ghi', 'Gohir.A12G051000' => 'ghi', 'Gohir.D11G328400' => 'ghi', 'Gohir.D12G049200' => 'ghi', 'Gorai.006G138000' => 'gra', 'Gorai.007G359700' => 'gra', 'Gorai.008G052100' => 'gra', 'GSVIVG01010061001' => 'vvi', 'GSVIVG01013454001' => 'vvi', 'HanXRQChr07g0193471' => 'han', 'HanXRQChr09g0257671' => 'han', 'Haze_05190' => 'cav', 'Haze_22884' => 'cav', 'Hma1.2p1_0166F.1_g073530' => 'hma', 'Hma1.2p1_0598F.1_g186720' => 'hma', 'Hma1.2p1_0890F.1_g232990' => 'hma', 'HPP92_003840' => 'vpl', 'HPP92_003841' => 'vpl', 'HPP92_003844' => 'vpl', 'HPP92_010217' => 'vpl', 'HPP92_023792' => 'vpl', 'Hund08737' => 'sun', 'Hund26023' => 'sun', 'Lalb_Chr15g0083641' => 'lal', 'Lalb_Chr18g0051901' => 'lal', 'Lalb_Chr20g0114371' => 'lal', 'Lj1A1152T40' => 'lonja', 'Lj2C341G8' => 'lonja', 'Lj6g0005879' => 'lja', 'Lsat_1_v5_gn_3_104341' => 'lsa', 'Lsat_1_v5_gn_8_107021' => 'lsa', 'Manes.03G072700' => 'mes', 'Manes.05G130300' => 'mes', 'Manes.16G059900' => 'mes', 'Mapoly0001s0176' => 'mpo', 'Mapoly0027s0174' => 'mpo', 'Mapoly0042s0120' => 'mpo', 'Mapoly0045s0137' => 'mpo', 'Mapoly0045s0145' => 'mpo', 'Mapoly0068s0056' => 'mpo', 'Mapoly0089s0060' => 'mpo', 'Mapoly0112s0054' => 'mpo', 'Mapoly0120s0052' => 'mpo', 'MBI02_g17884_MAGBIO' => 'mbi', 'MBI04_g23327_MAGBIO' => 'mbi', 'MD05G1242800' => 'mdo', 'MD10G1224800' => 'mdo', 'Medtr2g437660' => 'mtr', 'Medtr8g070700' => 'mtr', 'MELO3C006997.2' => 'cme', 'Migut.C00337' => 'egut', 'Migut.M02034' => 'egut', 'MSTRG.24894' => 'ama', 'Nitab4.5_0000614g0050' => 'nta', 'Nitab4.5_0001299g0090' => 'nta', 'Nitab4.5_0001815g0050' => 'nta', 'Nitab4.5_0009514g0060' => 'nta', 'Nitab4.5_0011054g0020' => 'nta', 'Nn2g10642' => 'nnu', 'Nn5g31076' => 'nnu', 'Nn5g31119' => 'nnu', 'Nn6g31573' => 'nnu', 'Nn6g33856' => 'nnu', 'Nn7g36409' => 'nnu', 'Nn7g38422' => 'nnu', 'Oeu001580.1' => 'oeu', 'Oeu005125.1' => 'oeu', 'Oeu013507.2' => 'oeu', 'Oeu028735.1' => 'oeu', 'Oeu052923.1' => 'oeu', 'Os02g0712500' => 'osa', 'Os06g0328800' => 'osa', 'Os06g0624700' => 'osa', 'Peaxi162Scf00313g00055' => 'pax', 'Peaxi162Scf00385g00108' => 'pax', 'PGR031G3161' => 'pgr', 'PGR042G3430' => 'pgr', 'PGSC0003DMG400009930' => 'stu', 'PGSC0003DMG400011286' => 'stu', 'PGSC0003DMG400013632' => 'stu', 'Phvul.003G275200' => 'pvu', 'Phvul.009G244900' => 'pvu', 'Potri.001G074600' => 'ptr', 'Potri.003G156600' => 'ptr', 'Potri.005G258900' => 'ptr', 'Pp3c10_23600' => 'ppa', 'Pp3c13_10860' => 'ppa', 'Pp3c17_15940' => 'ppa', 'Pp3c1_12470' => 'ppa', 'Pp3c21_19210' => 'ppa', 'Pp3c22_21200' => 'ppa', 'Pp3c25_6770' => 'ppa', 'Pp3c2_7810' => 'ppa', 'Pp3c3_33280' => 'ppa', 'Pp3c3_35060' => 'ppa', 'Pp3c4_10730' => 'ppa', 'Pp3c8_1720' => 'ppa', 'Pp3c8_1800' => 'ppa', 'Prupe.4G120600' => 'ppe', 'Prupe.5G001800' => 'ppe', 'Psat0s2609g0040' => 'psa', 'Psat1g151680' => 'psa', 'PSO017G1568' => 'pso', 'PSO017G5837' => 'pso', 'PSO170G4079' => 'pso', 'PSO541G4665' => 'pso', 'PSO675G7483' => 'pso', 'QL02p016151' => 'qlo', 'QL11p010844' => 'qlo', 'RcHm_v2.0_Chr5g0021801' => 'rch', 'RcHm_v2.0_Chr7g0217441' => 'rch', 'Rhsim02G0171400' => 'rsi', 'Rhsim06G0001200' => 'rsi', 'Rhsim13G0136100' => 'rsi', 'Sabra01G0052700' => 'sbr', 'Sabra03G0113600' => 'sbr', 'Sabra05G0200500' => 'sbr', 'SalBow7G2352' => 'sbo', 'SalBow8G0237' => 'sbo', 'SalBow8G0944' => 'sbo', 'Sc17g0004320' => 'sci', 'Sc17g0004330' => 'sci', 'Sc17g0004350' => 'sci', 'Sc24g0002830' => 'sci', 'Sed0009513' => 'sed', 'SEGI_14293' => 'sgi', 'SEGI_17172' => 'sgi', 'SGA_v2.0_scaffold161G37848' => 'sas', 'SGA_v2.0_scaffold26G11286' => 'sas', 'SGA_v2.0_scaffold423G51453' => 'sas', 'SHI30729' => 'shi', 'SHI32708' => 'shi', 'SMO351G0529' => 'smo', 'SMO364G0153' => 'smo', 'Solyc02g082140.3' => 'sly', 'Solyc04g082950.4' => 'sly', 'Solyc05g015790.2' => 'sly', 'Solyc10g005200.3' => 'sly', 'Sopen02g026800' => 'spe', 'Sopen04g036580' => 'spe', 'Sopen10g001190' => 'spe', 'Sp2g09480' => 'spa', 'Sp4g15910' => 'spa', 'Sp7g18600' => 'spa', 'TAR381G0011' => 'tar', 'TAR381G0624' => 'tar', 'TAR626G1872' => 'tar', 'TAR627G0873' => 'tar', 'TAR629G1088' => 'tar', 'THA.LOC104806225' => 'tha', 'THA.LOC104813216' => 'tha', 'THA.LOC104824814' => 'tha', 'THA.LOC104825419' => 'tha', 'Thecc.02G001300' => 'tca', 'Thecc.05G159800' => 'tca', 'Thhalv10000855m.g' => 'esa', 'Thhalv10016550m.g' => 'esa', 'Thhalv10024965m.g' => 'esa', 'TPR.G19838' => 'tpr', 'TPR.G28838' => 'tpr', 'TPR.G8447' => 'tpr', 'TWI38G0125' => 'twi', 'TWI63G0426' => 'twi', 'unitig_26.g9852' => 'ugi', 'unitig_46.g17966' => 'ugi', 'unitig_749.g13861' => 'ugi', 'vmacro03572' => 'vma', 'vmacro11019' => 'vma', 'vmacro21739' => 'vma', 'VMungo0251G0699' => 'vmu', 'VMungo1309G0920' => 'vmu', 'Zm00001eb252530' => 'zma', 'Zm00001eb281360' => 'zma', 'Zm00001eb387850' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002041', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002041' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002041', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '325', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002041' ) ), 'genes' => array( 'A01p11920' => 'bna', 'A03p18790' => 'bna', 'A05p11960' => 'bna', 'A06p47010' => 'bna', 'A08p14660' => 'bna', 'Aa31LG6G2600' => 'aar', 'Aa31LG9G13500' => 'aar', 'Aa31LG9G8510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1522' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.212' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.237' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.252' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.253' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.861' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.862' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1717' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2843' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3186' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3880' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.617' => 'aag', 'Actinidia13063' => 'ach', 'Actinidia15543' => 'ach', 'Actinidia15544' => 'ach', 'Actinidia17095' => 'ach', 'Actinidia31358' => 'ach', 'Actinidia31359' => 'ach', 'Actinidia34698' => 'ach', 'Ah.06g191600' => 'amhyb', 'Ah.09g231450' => 'amhyb', 'Ah.14g084970' => 'amhyb', 'Ah.15g091870' => 'amhyb', 'AL4G29240' => 'aly', 'AL7G33660' => 'aly', 'AL8G14880' => 'aly', 'Aqoxy1G01359' => 'aox', 'Aqoxy5G00942' => 'aox', 'arahy.Tifrunner.gnm1.ann1.KQJ89G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9B1MS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SABB4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WKJE7A' => 'arhy', 'AT2G33570' => 'ath', 'AT3G07380' => 'ath', 'AT3G60990' => 'ath', 'AT4G20170' => 'ath', 'AT5G44670' => 'ath', 'AT5G48190' => 'ath', 'ATR0794G071' => 'atr', 'Atru.chr10.240' => 'acertr', 'Atru.chr13.25' => 'acertr', 'AUR62025204' => 'cqu', 'AUR62028971' => 'cqu', 'AUR62040991' => 'cqu', 'AUR62040992' => 'cqu', 'AUR62040993' => 'cqu', 'AUR62042812' => 'cqu', 'AUR62042813' => 'cqu', 'AUR62042978' => 'cqu', 'BcaB01g03930' => 'bca', 'BcaB02g10580' => 'bca', 'BcaB03g11660' => 'bca', 'BcaC01g00658' => 'bca', 'BcaC01g05835' => 'bca', 'BcaC02g11441' => 'bca', 'BcaC06g31598' => 'bca', 'BcaC06g34525' => 'bca', 'BcaC09g51331' => 'bca', 'BcaNung03711' => 'bca', 'BolC1t01380H' => 'bol', 'BolC3t14578H' => 'bol', 'BolC3t20563H' => 'bol', 'BolC4t23122H' => 'bol', 'BolC7t43287H' => 'bol', 'BraA01t01134Z' => 'bra', 'BraA03t11139Z' => 'bra', 'BraA05t20139Z' => 'bra', 'BraA06t27574Z' => 'bra', 'BraA08t33454Z' => 'bra', 'C01p14160' => 'bna', 'C03p21950' => 'bna', 'C03p82820' => 'bna', 'C04p15510' => 'bna', 'C07p27560' => 'bna', 'CAN.G105.24' => 'can', 'CAN.G1330.29' => 'can', 'CAN.G241.3' => 'can', 'CAN.G809.15' => 'can', 'CANSAT35G0947' => 'cansat', 'CARHR127590' => 'chi', 'CARHR178220' => 'chi', 'CARHR227000' => 'chi', 'Carub.0004s1520' => 'cru', 'Carub.0007s2096' => 'cru', 'Carub.0008s0359' => 'cru', 'Ca_02414_v3' => 'car', 'Ca_22532_v3' => 'car', 'Cc09_g04650' => 'ccan', 'CDE01G0512' => 'cde', 'CDE05G3310' => 'cde', 'CDE06G0911' => 'cde', 'CDE08G1193' => 'cde', 'Cfa001160' => 'cfa', 'Cfa014162' => 'cfa', 'Ciclev10003494m.g' => 'ccl', 'Ciclev10014882m.g' => 'ccl', 'CiPaw.07G130600' => 'cil', 'CiPaw.09G140400' => 'cil', 'CiPaw.10G108000' => 'cil', 'ClCG01G025940' => 'cla', 'COL.COLO4_28196' => 'col', 'COL.COLO4_28201' => 'col', 'Cpa.g.sc1291.2' => 'cpa', 'Cpa.g.sc36.102' => 'cpa', 'CsaV3_6G053150' => 'csa', 'CSS0006084' => 'camsi', 'CSS0007815' => 'camsi', 'CSS0039929' => 'camsi', 'DCAR_001257' => 'dca', 'DCAR_003734' => 'dca', 'Dinv05513' => 'din', 'Dinv17884' => 'din', 'Dinv19792' => 'din', 'Duzib093G2162' => 'dzi', 'Duzib248G0909' => 'dzi', 'ECA232G0028' => 'eca', 'ECA246G0091' => 'eca', 'EL10Ac7g17306' => 'bvu', 'EL10Ac7g17307' => 'bvu', 'EL10Ac8g19100' => 'bvu', 'Eucgr.E04328' => 'egr', 'Eucgr.F03619' => 'egr', 'FAN04G3084' => 'fan', 'FAN08G1261' => 'fan', 'FAN11G2699' => 'fan', 'FAN13G0686' => 'fan', 'FAN16G3010' => 'fan', 'FAN18G0987' => 'fan', 'FAN21G2788' => 'fan', 'FAN25G3375' => 'fan', 'FvH4_3g13330' => 'fve', 'FvH4_5g26560' => 'fve', 'Glyma.08G267800' => 'gma', 'Glyma.09G047900' => 'gma', 'Glyma.15G155300' => 'gma', 'Glyma.16G094100' => 'gma', 'Gohir.A09G123700' => 'ghi', 'Gohir.A11G311800' => 'ghi', 'Gohir.A12G051000' => 'ghi', 'Gohir.D11G328400' => 'ghi', 'Gohir.D12G049200' => 'ghi', 'Gorai.006G138000' => 'gra', 'Gorai.007G359700' => 'gra', 'Gorai.008G052100' => 'gra', 'GSVIVG01010061001' => 'vvi', 'GSVIVG01013454001' => 'vvi', 'HanXRQChr07g0193471' => 'han', 'HanXRQChr09g0257671' => 'han', 'Haze_05190' => 'cav', 'Haze_22884' => 'cav', 'Hma1.2p1_0166F.1_g073530' => 'hma', 'Hma1.2p1_0598F.1_g186720' => 'hma', 'Hma1.2p1_0890F.1_g232990' => 'hma', 'HPP92_003840' => 'vpl', 'HPP92_003841' => 'vpl', 'HPP92_003844' => 'vpl', 'HPP92_010217' => 'vpl', 'HPP92_023792' => 'vpl', 'Hund08737' => 'sun', 'Hund26023' => 'sun', 'Lalb_Chr15g0083641' => 'lal', 'Lalb_Chr18g0051901' => 'lal', 'Lalb_Chr20g0114371' => 'lal', 'Lj1A1152T40' => 'lonja', 'Lj2C341G8' => 'lonja', 'Lj6g0005879' => 'lja', 'Lsat_1_v5_gn_3_104341' => 'lsa', 'Lsat_1_v5_gn_8_107021' => 'lsa', 'Manes.03G072700' => 'mes', 'Manes.05G130300' => 'mes', 'Manes.16G059900' => 'mes', 'Mapoly0001s0176' => 'mpo', 'Mapoly0027s0174' => 'mpo', 'Mapoly0042s0120' => 'mpo', 'Mapoly0045s0137' => 'mpo', 'Mapoly0045s0145' => 'mpo', 'Mapoly0068s0056' => 'mpo', 'Mapoly0089s0060' => 'mpo', 'Mapoly0112s0054' => 'mpo', 'Mapoly0120s0052' => 'mpo', 'MBI02_g17884_MAGBIO' => 'mbi', 'MBI04_g23327_MAGBIO' => 'mbi', 'MD05G1242800' => 'mdo', 'MD10G1224800' => 'mdo', 'Medtr2g437660' => 'mtr', 'Medtr8g070700' => 'mtr', 'MELO3C006997.2' => 'cme', 'Migut.C00337' => 'egut', 'Migut.M02034' => 'egut', 'MSTRG.24894' => 'ama', 'Nitab4.5_0000614g0050' => 'nta', 'Nitab4.5_0001299g0090' => 'nta', 'Nitab4.5_0001815g0050' => 'nta', 'Nitab4.5_0009514g0060' => 'nta', 'Nitab4.5_0011054g0020' => 'nta', 'Nn2g10642' => 'nnu', 'Nn5g31076' => 'nnu', 'Nn5g31119' => 'nnu', 'Nn6g31573' => 'nnu', 'Nn6g33856' => 'nnu', 'Nn7g36409' => 'nnu', 'Nn7g38422' => 'nnu', 'Oeu001580.1' => 'oeu', 'Oeu005125.1' => 'oeu', 'Oeu013507.2' => 'oeu', 'Oeu028735.1' => 'oeu', 'Oeu052923.1' => 'oeu', 'Os02g0712500' => 'osa', 'Os06g0328800' => 'osa', 'Os06g0624700' => 'osa', 'Peaxi162Scf00313g00055' => 'pax', 'Peaxi162Scf00385g00108' => 'pax', 'PGR031G3161' => 'pgr', 'PGR042G3430' => 'pgr', 'PGSC0003DMG400009930' => 'stu', 'PGSC0003DMG400011286' => 'stu', 'PGSC0003DMG400013632' => 'stu', 'Phvul.003G275200' => 'pvu', 'Phvul.009G244900' => 'pvu', 'Potri.001G074600' => 'ptr', 'Potri.003G156600' => 'ptr', 'Potri.005G258900' => 'ptr', 'Pp3c10_23600' => 'ppa', 'Pp3c13_10860' => 'ppa', 'Pp3c17_15940' => 'ppa', 'Pp3c1_12470' => 'ppa', 'Pp3c21_19210' => 'ppa', 'Pp3c22_21200' => 'ppa', 'Pp3c25_6770' => 'ppa', 'Pp3c2_7810' => 'ppa', 'Pp3c3_33280' => 'ppa', 'Pp3c3_35060' => 'ppa', 'Pp3c4_10730' => 'ppa', 'Pp3c8_1720' => 'ppa', 'Pp3c8_1800' => 'ppa', 'Prupe.4G120600' => 'ppe', 'Prupe.5G001800' => 'ppe', 'Psat0s2609g0040' => 'psa', 'Psat1g151680' => 'psa', 'PSO017G1568' => 'pso', 'PSO017G5837' => 'pso', 'PSO170G4079' => 'pso', 'PSO541G4665' => 'pso', 'PSO675G7483' => 'pso', 'QL02p016151' => 'qlo', 'QL11p010844' => 'qlo', 'RcHm_v2.0_Chr5g0021801' => 'rch', 'RcHm_v2.0_Chr7g0217441' => 'rch', 'Rhsim02G0171400' => 'rsi', 'Rhsim06G0001200' => 'rsi', 'Rhsim13G0136100' => 'rsi', 'Sabra01G0052700' => 'sbr', 'Sabra03G0113600' => 'sbr', 'Sabra05G0200500' => 'sbr', 'SalBow7G2352' => 'sbo', 'SalBow8G0237' => 'sbo', 'SalBow8G0944' => 'sbo', 'Sc17g0004320' => 'sci', 'Sc17g0004330' => 'sci', 'Sc17g0004350' => 'sci', 'Sc24g0002830' => 'sci', 'Sed0009513' => 'sed', 'SEGI_14293' => 'sgi', 'SEGI_17172' => 'sgi', 'SGA_v2.0_scaffold161G37848' => 'sas', 'SGA_v2.0_scaffold26G11286' => 'sas', 'SGA_v2.0_scaffold423G51453' => 'sas', 'SHI30729' => 'shi', 'SHI32708' => 'shi', 'SMO351G0529' => 'smo', 'SMO364G0153' => 'smo', 'Solyc02g082140.3' => 'sly', 'Solyc04g082950.4' => 'sly', 'Solyc05g015790.2' => 'sly', 'Solyc10g005200.3' => 'sly', 'Sopen02g026800' => 'spe', 'Sopen04g036580' => 'spe', 'Sopen10g001190' => 'spe', 'Sp2g09480' => 'spa', 'Sp4g15910' => 'spa', 'Sp7g18600' => 'spa', 'TAR381G0011' => 'tar', 'TAR381G0624' => 'tar', 'TAR626G1872' => 'tar', 'TAR627G0873' => 'tar', 'TAR629G1088' => 'tar', 'THA.LOC104806225' => 'tha', 'THA.LOC104813216' => 'tha', 'THA.LOC104824814' => 'tha', 'THA.LOC104825419' => 'tha', 'Thecc.02G001300' => 'tca', 'Thecc.05G159800' => 'tca', 'Thhalv10000855m.g' => 'esa', 'Thhalv10016550m.g' => 'esa', 'Thhalv10024965m.g' => 'esa', 'TPR.G19838' => 'tpr', 'TPR.G28838' => 'tpr', 'TPR.G8447' => 'tpr', 'TWI38G0125' => 'twi', 'TWI63G0426' => 'twi', 'unitig_26.g9852' => 'ugi', 'unitig_46.g17966' => 'ugi', 'unitig_749.g13861' => 'ugi', 'vmacro03572' => 'vma', 'vmacro11019' => 'vma', 'vmacro21739' => 'vma', 'VMungo0251G0699' => 'vmu', 'VMungo1309G0920' => 'vmu', 'Zm00001eb252530' => 'zma', 'Zm00001eb281360' => 'zma', 'Zm00001eb387850' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002041' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002041' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002041' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002041' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002041', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '325', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p11920' => 'bna', 'A03p18790' => 'bna', 'A05p11960' => 'bna', 'A06p47010' => 'bna', 'A08p14660' => 'bna', 'Aa31LG6G2600' => 'aar', 'Aa31LG9G13500' => 'aar', 'Aa31LG9G8510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1522' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.212' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.237' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.252' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.253' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.861' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.862' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1717' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2843' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3186' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3880' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.617' => 'aag', 'Actinidia13063' => 'ach', 'Actinidia15543' => 'ach', 'Actinidia15544' => 'ach', 'Actinidia17095' => 'ach', 'Actinidia31358' => 'ach', 'Actinidia31359' => 'ach', 'Actinidia34698' => 'ach', 'Ah.06g191600' => 'amhyb', 'Ah.09g231450' => 'amhyb', 'Ah.14g084970' => 'amhyb', 'Ah.15g091870' => 'amhyb', 'AL4G29240' => 'aly', 'AL7G33660' => 'aly', 'AL8G14880' => 'aly', 'Aqoxy1G01359' => 'aox', 'Aqoxy5G00942' => 'aox', 'arahy.Tifrunner.gnm1.ann1.KQJ89G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9B1MS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SABB4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WKJE7A' => 'arhy', 'AT2G33570' => 'ath', 'AT3G07380' => 'ath', 'AT3G60990' => 'ath', 'AT4G20170' => 'ath', 'AT5G44670' => 'ath', 'AT5G48190' => 'ath', 'ATR0794G071' => 'atr', 'Atru.chr10.240' => 'acertr', 'Atru.chr13.25' => 'acertr', 'AUR62025204' => 'cqu', 'AUR62028971' => 'cqu', 'AUR62040991' => 'cqu', 'AUR62040992' => 'cqu', 'AUR62040993' => 'cqu', 'AUR62042812' => 'cqu', 'AUR62042813' => 'cqu', 'AUR62042978' => 'cqu', 'BcaB01g03930' => 'bca', 'BcaB02g10580' => 'bca', 'BcaB03g11660' => 'bca', 'BcaC01g00658' => 'bca', 'BcaC01g05835' => 'bca', 'BcaC02g11441' => 'bca', 'BcaC06g31598' => 'bca', 'BcaC06g34525' => 'bca', 'BcaC09g51331' => 'bca', 'BcaNung03711' => 'bca', 'BolC1t01380H' => 'bol', 'BolC3t14578H' => 'bol', 'BolC3t20563H' => 'bol', 'BolC4t23122H' => 'bol', 'BolC7t43287H' => 'bol', 'BraA01t01134Z' => 'bra', 'BraA03t11139Z' => 'bra', 'BraA05t20139Z' => 'bra', 'BraA06t27574Z' => 'bra', 'BraA08t33454Z' => 'bra', 'C01p14160' => 'bna', 'C03p21950' => 'bna', 'C03p82820' => 'bna', 'C04p15510' => 'bna', 'C07p27560' => 'bna', 'CAN.G105.24' => 'can', 'CAN.G1330.29' => 'can', 'CAN.G241.3' => 'can', 'CAN.G809.15' => 'can', 'CANSAT35G0947' => 'cansat', 'CARHR127590' => 'chi', 'CARHR178220' => 'chi', 'CARHR227000' => 'chi', 'Carub.0004s1520' => 'cru', 'Carub.0007s2096' => 'cru', 'Carub.0008s0359' => 'cru', 'Ca_02414_v3' => 'car', 'Ca_22532_v3' => 'car', 'Cc09_g04650' => 'ccan', 'CDE01G0512' => 'cde', 'CDE05G3310' => 'cde', 'CDE06G0911' => 'cde', 'CDE08G1193' => 'cde', 'Cfa001160' => 'cfa', 'Cfa014162' => 'cfa', 'Ciclev10003494m.g' => 'ccl', 'Ciclev10014882m.g' => 'ccl', 'CiPaw.07G130600' => 'cil', 'CiPaw.09G140400' => 'cil', 'CiPaw.10G108000' => 'cil', 'ClCG01G025940' => 'cla', 'COL.COLO4_28196' => 'col', 'COL.COLO4_28201' => 'col', 'Cpa.g.sc1291.2' => 'cpa', 'Cpa.g.sc36.102' => 'cpa', 'CsaV3_6G053150' => 'csa', 'CSS0006084' => 'camsi', 'CSS0007815' => 'camsi', 'CSS0039929' => 'camsi', 'DCAR_001257' => 'dca', 'DCAR_003734' => 'dca', 'Dinv05513' => 'din', 'Dinv17884' => 'din', 'Dinv19792' => 'din', 'Duzib093G2162' => 'dzi', 'Duzib248G0909' => 'dzi', 'ECA232G0028' => 'eca', 'ECA246G0091' => 'eca', 'EL10Ac7g17306' => 'bvu', 'EL10Ac7g17307' => 'bvu', 'EL10Ac8g19100' => 'bvu', 'Eucgr.E04328' => 'egr', 'Eucgr.F03619' => 'egr', 'FAN04G3084' => 'fan', 'FAN08G1261' => 'fan', 'FAN11G2699' => 'fan', 'FAN13G0686' => 'fan', 'FAN16G3010' => 'fan', 'FAN18G0987' => 'fan', 'FAN21G2788' => 'fan', 'FAN25G3375' => 'fan', 'FvH4_3g13330' => 'fve', 'FvH4_5g26560' => 'fve', 'Glyma.08G267800' => 'gma', 'Glyma.09G047900' => 'gma', 'Glyma.15G155300' => 'gma', 'Glyma.16G094100' => 'gma', 'Gohir.A09G123700' => 'ghi', 'Gohir.A11G311800' => 'ghi', 'Gohir.A12G051000' => 'ghi', 'Gohir.D11G328400' => 'ghi', 'Gohir.D12G049200' => 'ghi', 'Gorai.006G138000' => 'gra', 'Gorai.007G359700' => 'gra', 'Gorai.008G052100' => 'gra', 'GSVIVG01010061001' => 'vvi', 'GSVIVG01013454001' => 'vvi', 'HanXRQChr07g0193471' => 'han', 'HanXRQChr09g0257671' => 'han', 'Haze_05190' => 'cav', 'Haze_22884' => 'cav', 'Hma1.2p1_0166F.1_g073530' => 'hma', 'Hma1.2p1_0598F.1_g186720' => 'hma', 'Hma1.2p1_0890F.1_g232990' => 'hma', 'HPP92_003840' => 'vpl', 'HPP92_003841' => 'vpl', 'HPP92_003844' => 'vpl', 'HPP92_010217' => 'vpl', 'HPP92_023792' => 'vpl', 'Hund08737' => 'sun', 'Hund26023' => 'sun', 'Lalb_Chr15g0083641' => 'lal', 'Lalb_Chr18g0051901' => 'lal', 'Lalb_Chr20g0114371' => 'lal', 'Lj1A1152T40' => 'lonja', 'Lj2C341G8' => 'lonja', 'Lj6g0005879' => 'lja', 'Lsat_1_v5_gn_3_104341' => 'lsa', 'Lsat_1_v5_gn_8_107021' => 'lsa', 'Manes.03G072700' => 'mes', 'Manes.05G130300' => 'mes', 'Manes.16G059900' => 'mes', 'Mapoly0001s0176' => 'mpo', 'Mapoly0027s0174' => 'mpo', 'Mapoly0042s0120' => 'mpo', 'Mapoly0045s0137' => 'mpo', 'Mapoly0045s0145' => 'mpo', 'Mapoly0068s0056' => 'mpo', 'Mapoly0089s0060' => 'mpo', 'Mapoly0112s0054' => 'mpo', 'Mapoly0120s0052' => 'mpo', 'MBI02_g17884_MAGBIO' => 'mbi', 'MBI04_g23327_MAGBIO' => 'mbi', 'MD05G1242800' => 'mdo', 'MD10G1224800' => 'mdo', 'Medtr2g437660' => 'mtr', 'Medtr8g070700' => 'mtr', 'MELO3C006997.2' => 'cme', 'Migut.C00337' => 'egut', 'Migut.M02034' => 'egut', 'MSTRG.24894' => 'ama', 'Nitab4.5_0000614g0050' => 'nta', 'Nitab4.5_0001299g0090' => 'nta', 'Nitab4.5_0001815g0050' => 'nta', 'Nitab4.5_0009514g0060' => 'nta', 'Nitab4.5_0011054g0020' => 'nta', 'Nn2g10642' => 'nnu', 'Nn5g31076' => 'nnu', 'Nn5g31119' => 'nnu', 'Nn6g31573' => 'nnu', 'Nn6g33856' => 'nnu', 'Nn7g36409' => 'nnu', 'Nn7g38422' => 'nnu', 'Oeu001580.1' => 'oeu', 'Oeu005125.1' => 'oeu', 'Oeu013507.2' => 'oeu', 'Oeu028735.1' => 'oeu', 'Oeu052923.1' => 'oeu', 'Os02g0712500' => 'osa', 'Os06g0328800' => 'osa', 'Os06g0624700' => 'osa', 'Peaxi162Scf00313g00055' => 'pax', 'Peaxi162Scf00385g00108' => 'pax', 'PGR031G3161' => 'pgr', 'PGR042G3430' => 'pgr', 'PGSC0003DMG400009930' => 'stu', 'PGSC0003DMG400011286' => 'stu', 'PGSC0003DMG400013632' => 'stu', 'Phvul.003G275200' => 'pvu', 'Phvul.009G244900' => 'pvu', 'Potri.001G074600' => 'ptr', 'Potri.003G156600' => 'ptr', 'Potri.005G258900' => 'ptr', 'Pp3c10_23600' => 'ppa', 'Pp3c13_10860' => 'ppa', 'Pp3c17_15940' => 'ppa', 'Pp3c1_12470' => 'ppa', 'Pp3c21_19210' => 'ppa', 'Pp3c22_21200' => 'ppa', 'Pp3c25_6770' => 'ppa', 'Pp3c2_7810' => 'ppa', 'Pp3c3_33280' => 'ppa', 'Pp3c3_35060' => 'ppa', 'Pp3c4_10730' => 'ppa', 'Pp3c8_1720' => 'ppa', 'Pp3c8_1800' => 'ppa', 'Prupe.4G120600' => 'ppe', 'Prupe.5G001800' => 'ppe', 'Psat0s2609g0040' => 'psa', 'Psat1g151680' => 'psa', 'PSO017G1568' => 'pso', 'PSO017G5837' => 'pso', 'PSO170G4079' => 'pso', 'PSO541G4665' => 'pso', 'PSO675G7483' => 'pso', 'QL02p016151' => 'qlo', 'QL11p010844' => 'qlo', 'RcHm_v2.0_Chr5g0021801' => 'rch', 'RcHm_v2.0_Chr7g0217441' => 'rch', 'Rhsim02G0171400' => 'rsi', 'Rhsim06G0001200' => 'rsi', 'Rhsim13G0136100' => 'rsi', 'Sabra01G0052700' => 'sbr', 'Sabra03G0113600' => 'sbr', 'Sabra05G0200500' => 'sbr', 'SalBow7G2352' => 'sbo', 'SalBow8G0237' => 'sbo', 'SalBow8G0944' => 'sbo', 'Sc17g0004320' => 'sci', 'Sc17g0004330' => 'sci', 'Sc17g0004350' => 'sci', 'Sc24g0002830' => 'sci', 'Sed0009513' => 'sed', 'SEGI_14293' => 'sgi', 'SEGI_17172' => 'sgi', 'SGA_v2.0_scaffold161G37848' => 'sas', 'SGA_v2.0_scaffold26G11286' => 'sas', 'SGA_v2.0_scaffold423G51453' => 'sas', 'SHI30729' => 'shi', 'SHI32708' => 'shi', 'SMO351G0529' => 'smo', 'SMO364G0153' => 'smo', 'Solyc02g082140.3' => 'sly', 'Solyc04g082950.4' => 'sly', 'Solyc05g015790.2' => 'sly', 'Solyc10g005200.3' => 'sly', 'Sopen02g026800' => 'spe', 'Sopen04g036580' => 'spe', 'Sopen10g001190' => 'spe', 'Sp2g09480' => 'spa', 'Sp4g15910' => 'spa', 'Sp7g18600' => 'spa', 'TAR381G0011' => 'tar', 'TAR381G0624' => 'tar', 'TAR626G1872' => 'tar', 'TAR627G0873' => 'tar', 'TAR629G1088' => 'tar', 'THA.LOC104806225' => 'tha', 'THA.LOC104813216' => 'tha', 'THA.LOC104824814' => 'tha', 'THA.LOC104825419' => 'tha', 'Thecc.02G001300' => 'tca', 'Thecc.05G159800' => 'tca', 'Thhalv10000855m.g' => 'esa', 'Thhalv10016550m.g' => 'esa', 'Thhalv10024965m.g' => 'esa', 'TPR.G19838' => 'tpr', 'TPR.G28838' => 'tpr', 'TPR.G8447' => 'tpr', 'TWI38G0125' => 'twi', 'TWI63G0426' => 'twi', 'unitig_26.g9852' => 'ugi', 'unitig_46.g17966' => 'ugi', 'unitig_749.g13861' => 'ugi', 'vmacro03572' => 'vma', 'vmacro11019' => 'vma', 'vmacro21739' => 'vma', 'VMungo0251G0699' => 'vmu', 'VMungo1309G0920' => 'vmu', 'Zm00001eb252530' => 'zma', 'Zm00001eb281360' => 'zma', 'Zm00001eb387850' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002041', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002041' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002041', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '325', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002041' ) ), 'genes' => array( 'A01p11920' => 'bna', 'A03p18790' => 'bna', 'A05p11960' => 'bna', 'A06p47010' => 'bna', 'A08p14660' => 'bna', 'Aa31LG6G2600' => 'aar', 'Aa31LG9G13500' => 'aar', 'Aa31LG9G8510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1522' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.212' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.237' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.252' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.253' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.861' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.862' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1717' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2843' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3186' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3880' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.617' => 'aag', 'Actinidia13063' => 'ach', 'Actinidia15543' => 'ach', 'Actinidia15544' => 'ach', 'Actinidia17095' => 'ach', 'Actinidia31358' => 'ach', 'Actinidia31359' => 'ach', 'Actinidia34698' => 'ach', 'Ah.06g191600' => 'amhyb', 'Ah.09g231450' => 'amhyb', 'Ah.14g084970' => 'amhyb', 'Ah.15g091870' => 'amhyb', 'AL4G29240' => 'aly', 'AL7G33660' => 'aly', 'AL8G14880' => 'aly', 'Aqoxy1G01359' => 'aox', 'Aqoxy5G00942' => 'aox', 'arahy.Tifrunner.gnm1.ann1.KQJ89G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9B1MS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SABB4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WKJE7A' => 'arhy', 'AT2G33570' => 'ath', 'AT3G07380' => 'ath', 'AT3G60990' => 'ath', 'AT4G20170' => 'ath', 'AT5G44670' => 'ath', 'AT5G48190' => 'ath', 'ATR0794G071' => 'atr', 'Atru.chr10.240' => 'acertr', 'Atru.chr13.25' => 'acertr', 'AUR62025204' => 'cqu', 'AUR62028971' => 'cqu', 'AUR62040991' => 'cqu', 'AUR62040992' => 'cqu', 'AUR62040993' => 'cqu', 'AUR62042812' => 'cqu', 'AUR62042813' => 'cqu', 'AUR62042978' => 'cqu', 'BcaB01g03930' => 'bca', 'BcaB02g10580' => 'bca', 'BcaB03g11660' => 'bca', 'BcaC01g00658' => 'bca', 'BcaC01g05835' => 'bca', 'BcaC02g11441' => 'bca', 'BcaC06g31598' => 'bca', 'BcaC06g34525' => 'bca', 'BcaC09g51331' => 'bca', 'BcaNung03711' => 'bca', 'BolC1t01380H' => 'bol', 'BolC3t14578H' => 'bol', 'BolC3t20563H' => 'bol', 'BolC4t23122H' => 'bol', 'BolC7t43287H' => 'bol', 'BraA01t01134Z' => 'bra', 'BraA03t11139Z' => 'bra', 'BraA05t20139Z' => 'bra', 'BraA06t27574Z' => 'bra', 'BraA08t33454Z' => 'bra', 'C01p14160' => 'bna', 'C03p21950' => 'bna', 'C03p82820' => 'bna', 'C04p15510' => 'bna', 'C07p27560' => 'bna', 'CAN.G105.24' => 'can', 'CAN.G1330.29' => 'can', 'CAN.G241.3' => 'can', 'CAN.G809.15' => 'can', 'CANSAT35G0947' => 'cansat', 'CARHR127590' => 'chi', 'CARHR178220' => 'chi', 'CARHR227000' => 'chi', 'Carub.0004s1520' => 'cru', 'Carub.0007s2096' => 'cru', 'Carub.0008s0359' => 'cru', 'Ca_02414_v3' => 'car', 'Ca_22532_v3' => 'car', 'Cc09_g04650' => 'ccan', 'CDE01G0512' => 'cde', 'CDE05G3310' => 'cde', 'CDE06G0911' => 'cde', 'CDE08G1193' => 'cde', 'Cfa001160' => 'cfa', 'Cfa014162' => 'cfa', 'Ciclev10003494m.g' => 'ccl', 'Ciclev10014882m.g' => 'ccl', 'CiPaw.07G130600' => 'cil', 'CiPaw.09G140400' => 'cil', 'CiPaw.10G108000' => 'cil', 'ClCG01G025940' => 'cla', 'COL.COLO4_28196' => 'col', 'COL.COLO4_28201' => 'col', 'Cpa.g.sc1291.2' => 'cpa', 'Cpa.g.sc36.102' => 'cpa', 'CsaV3_6G053150' => 'csa', 'CSS0006084' => 'camsi', 'CSS0007815' => 'camsi', 'CSS0039929' => 'camsi', 'DCAR_001257' => 'dca', 'DCAR_003734' => 'dca', 'Dinv05513' => 'din', 'Dinv17884' => 'din', 'Dinv19792' => 'din', 'Duzib093G2162' => 'dzi', 'Duzib248G0909' => 'dzi', 'ECA232G0028' => 'eca', 'ECA246G0091' => 'eca', 'EL10Ac7g17306' => 'bvu', 'EL10Ac7g17307' => 'bvu', 'EL10Ac8g19100' => 'bvu', 'Eucgr.E04328' => 'egr', 'Eucgr.F03619' => 'egr', 'FAN04G3084' => 'fan', 'FAN08G1261' => 'fan', 'FAN11G2699' => 'fan', 'FAN13G0686' => 'fan', 'FAN16G3010' => 'fan', 'FAN18G0987' => 'fan', 'FAN21G2788' => 'fan', 'FAN25G3375' => 'fan', 'FvH4_3g13330' => 'fve', 'FvH4_5g26560' => 'fve', 'Glyma.08G267800' => 'gma', 'Glyma.09G047900' => 'gma', 'Glyma.15G155300' => 'gma', 'Glyma.16G094100' => 'gma', 'Gohir.A09G123700' => 'ghi', 'Gohir.A11G311800' => 'ghi', 'Gohir.A12G051000' => 'ghi', 'Gohir.D11G328400' => 'ghi', 'Gohir.D12G049200' => 'ghi', 'Gorai.006G138000' => 'gra', 'Gorai.007G359700' => 'gra', 'Gorai.008G052100' => 'gra', 'GSVIVG01010061001' => 'vvi', 'GSVIVG01013454001' => 'vvi', 'HanXRQChr07g0193471' => 'han', 'HanXRQChr09g0257671' => 'han', 'Haze_05190' => 'cav', 'Haze_22884' => 'cav', 'Hma1.2p1_0166F.1_g073530' => 'hma', 'Hma1.2p1_0598F.1_g186720' => 'hma', 'Hma1.2p1_0890F.1_g232990' => 'hma', 'HPP92_003840' => 'vpl', 'HPP92_003841' => 'vpl', 'HPP92_003844' => 'vpl', 'HPP92_010217' => 'vpl', 'HPP92_023792' => 'vpl', 'Hund08737' => 'sun', 'Hund26023' => 'sun', 'Lalb_Chr15g0083641' => 'lal', 'Lalb_Chr18g0051901' => 'lal', 'Lalb_Chr20g0114371' => 'lal', 'Lj1A1152T40' => 'lonja', 'Lj2C341G8' => 'lonja', 'Lj6g0005879' => 'lja', 'Lsat_1_v5_gn_3_104341' => 'lsa', 'Lsat_1_v5_gn_8_107021' => 'lsa', 'Manes.03G072700' => 'mes', 'Manes.05G130300' => 'mes', 'Manes.16G059900' => 'mes', 'Mapoly0001s0176' => 'mpo', 'Mapoly0027s0174' => 'mpo', 'Mapoly0042s0120' => 'mpo', 'Mapoly0045s0137' => 'mpo', 'Mapoly0045s0145' => 'mpo', 'Mapoly0068s0056' => 'mpo', 'Mapoly0089s0060' => 'mpo', 'Mapoly0112s0054' => 'mpo', 'Mapoly0120s0052' => 'mpo', 'MBI02_g17884_MAGBIO' => 'mbi', 'MBI04_g23327_MAGBIO' => 'mbi', 'MD05G1242800' => 'mdo', 'MD10G1224800' => 'mdo', 'Medtr2g437660' => 'mtr', 'Medtr8g070700' => 'mtr', 'MELO3C006997.2' => 'cme', 'Migut.C00337' => 'egut', 'Migut.M02034' => 'egut', 'MSTRG.24894' => 'ama', 'Nitab4.5_0000614g0050' => 'nta', 'Nitab4.5_0001299g0090' => 'nta', 'Nitab4.5_0001815g0050' => 'nta', 'Nitab4.5_0009514g0060' => 'nta', 'Nitab4.5_0011054g0020' => 'nta', 'Nn2g10642' => 'nnu', 'Nn5g31076' => 'nnu', 'Nn5g31119' => 'nnu', 'Nn6g31573' => 'nnu', 'Nn6g33856' => 'nnu', 'Nn7g36409' => 'nnu', 'Nn7g38422' => 'nnu', 'Oeu001580.1' => 'oeu', 'Oeu005125.1' => 'oeu', 'Oeu013507.2' => 'oeu', 'Oeu028735.1' => 'oeu', 'Oeu052923.1' => 'oeu', 'Os02g0712500' => 'osa', 'Os06g0328800' => 'osa', 'Os06g0624700' => 'osa', 'Peaxi162Scf00313g00055' => 'pax', 'Peaxi162Scf00385g00108' => 'pax', 'PGR031G3161' => 'pgr', 'PGR042G3430' => 'pgr', 'PGSC0003DMG400009930' => 'stu', 'PGSC0003DMG400011286' => 'stu', 'PGSC0003DMG400013632' => 'stu', 'Phvul.003G275200' => 'pvu', 'Phvul.009G244900' => 'pvu', 'Potri.001G074600' => 'ptr', 'Potri.003G156600' => 'ptr', 'Potri.005G258900' => 'ptr', 'Pp3c10_23600' => 'ppa', 'Pp3c13_10860' => 'ppa', 'Pp3c17_15940' => 'ppa', 'Pp3c1_12470' => 'ppa', 'Pp3c21_19210' => 'ppa', 'Pp3c22_21200' => 'ppa', 'Pp3c25_6770' => 'ppa', 'Pp3c2_7810' => 'ppa', 'Pp3c3_33280' => 'ppa', 'Pp3c3_35060' => 'ppa', 'Pp3c4_10730' => 'ppa', 'Pp3c8_1720' => 'ppa', 'Pp3c8_1800' => 'ppa', 'Prupe.4G120600' => 'ppe', 'Prupe.5G001800' => 'ppe', 'Psat0s2609g0040' => 'psa', 'Psat1g151680' => 'psa', 'PSO017G1568' => 'pso', 'PSO017G5837' => 'pso', 'PSO170G4079' => 'pso', 'PSO541G4665' => 'pso', 'PSO675G7483' => 'pso', 'QL02p016151' => 'qlo', 'QL11p010844' => 'qlo', 'RcHm_v2.0_Chr5g0021801' => 'rch', 'RcHm_v2.0_Chr7g0217441' => 'rch', 'Rhsim02G0171400' => 'rsi', 'Rhsim06G0001200' => 'rsi', 'Rhsim13G0136100' => 'rsi', 'Sabra01G0052700' => 'sbr', 'Sabra03G0113600' => 'sbr', 'Sabra05G0200500' => 'sbr', 'SalBow7G2352' => 'sbo', 'SalBow8G0237' => 'sbo', 'SalBow8G0944' => 'sbo', 'Sc17g0004320' => 'sci', 'Sc17g0004330' => 'sci', 'Sc17g0004350' => 'sci', 'Sc24g0002830' => 'sci', 'Sed0009513' => 'sed', 'SEGI_14293' => 'sgi', 'SEGI_17172' => 'sgi', 'SGA_v2.0_scaffold161G37848' => 'sas', 'SGA_v2.0_scaffold26G11286' => 'sas', 'SGA_v2.0_scaffold423G51453' => 'sas', 'SHI30729' => 'shi', 'SHI32708' => 'shi', 'SMO351G0529' => 'smo', 'SMO364G0153' => 'smo', 'Solyc02g082140.3' => 'sly', 'Solyc04g082950.4' => 'sly', 'Solyc05g015790.2' => 'sly', 'Solyc10g005200.3' => 'sly', 'Sopen02g026800' => 'spe', 'Sopen04g036580' => 'spe', 'Sopen10g001190' => 'spe', 'Sp2g09480' => 'spa', 'Sp4g15910' => 'spa', 'Sp7g18600' => 'spa', 'TAR381G0011' => 'tar', 'TAR381G0624' => 'tar', 'TAR626G1872' => 'tar', 'TAR627G0873' => 'tar', 'TAR629G1088' => 'tar', 'THA.LOC104806225' => 'tha', 'THA.LOC104813216' => 'tha', 'THA.LOC104824814' => 'tha', 'THA.LOC104825419' => 'tha', 'Thecc.02G001300' => 'tca', 'Thecc.05G159800' => 'tca', 'Thhalv10000855m.g' => 'esa', 'Thhalv10016550m.g' => 'esa', 'Thhalv10024965m.g' => 'esa', 'TPR.G19838' => 'tpr', 'TPR.G28838' => 'tpr', 'TPR.G8447' => 'tpr', 'TWI38G0125' => 'twi', 'TWI63G0426' => 'twi', 'unitig_26.g9852' => 'ugi', 'unitig_46.g17966' => 'ugi', 'unitig_749.g13861' => 'ugi', 'vmacro03572' => 'vma', 'vmacro11019' => 'vma', 'vmacro21739' => 'vma', 'VMungo0251G0699' => 'vmu', 'VMungo1309G0920' => 'vmu', 'Zm00001eb252530' => 'zma', 'Zm00001eb281360' => 'zma', 'Zm00001eb387850' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002041' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002041' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002041' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002041' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002041', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '325', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A01p11920' => 'bna', 'A03p18790' => 'bna', 'A05p11960' => 'bna', 'A06p47010' => 'bna', 'A08p14660' => 'bna', 'Aa31LG6G2600' => 'aar', 'Aa31LG9G13500' => 'aar', 'Aa31LG9G8510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1522' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.212' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.237' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.252' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.253' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.861' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.862' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1717' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2843' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3186' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3880' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.617' => 'aag', 'Actinidia13063' => 'ach', 'Actinidia15543' => 'ach', 'Actinidia15544' => 'ach', 'Actinidia17095' => 'ach', 'Actinidia31358' => 'ach', 'Actinidia31359' => 'ach', 'Actinidia34698' => 'ach', 'Ah.06g191600' => 'amhyb', 'Ah.09g231450' => 'amhyb', 'Ah.14g084970' => 'amhyb', 'Ah.15g091870' => 'amhyb', 'AL4G29240' => 'aly', 'AL7G33660' => 'aly', 'AL8G14880' => 'aly', 'Aqoxy1G01359' => 'aox', 'Aqoxy5G00942' => 'aox', 'arahy.Tifrunner.gnm1.ann1.KQJ89G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9B1MS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SABB4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WKJE7A' => 'arhy', 'AT2G33570' => 'ath', 'AT3G07380' => 'ath', 'AT3G60990' => 'ath', 'AT4G20170' => 'ath', 'AT5G44670' => 'ath', 'AT5G48190' => 'ath', 'ATR0794G071' => 'atr', 'Atru.chr10.240' => 'acertr', 'Atru.chr13.25' => 'acertr', 'AUR62025204' => 'cqu', 'AUR62028971' => 'cqu', 'AUR62040991' => 'cqu', 'AUR62040992' => 'cqu', 'AUR62040993' => 'cqu', 'AUR62042812' => 'cqu', 'AUR62042813' => 'cqu', 'AUR62042978' => 'cqu', 'BcaB01g03930' => 'bca', 'BcaB02g10580' => 'bca', 'BcaB03g11660' => 'bca', 'BcaC01g00658' => 'bca', 'BcaC01g05835' => 'bca', 'BcaC02g11441' => 'bca', 'BcaC06g31598' => 'bca', 'BcaC06g34525' => 'bca', 'BcaC09g51331' => 'bca', 'BcaNung03711' => 'bca', 'BolC1t01380H' => 'bol', 'BolC3t14578H' => 'bol', 'BolC3t20563H' => 'bol', 'BolC4t23122H' => 'bol', 'BolC7t43287H' => 'bol', 'BraA01t01134Z' => 'bra', 'BraA03t11139Z' => 'bra', 'BraA05t20139Z' => 'bra', 'BraA06t27574Z' => 'bra', 'BraA08t33454Z' => 'bra', 'C01p14160' => 'bna', 'C03p21950' => 'bna', 'C03p82820' => 'bna', 'C04p15510' => 'bna', 'C07p27560' => 'bna', 'CAN.G105.24' => 'can', 'CAN.G1330.29' => 'can', 'CAN.G241.3' => 'can', 'CAN.G809.15' => 'can', 'CANSAT35G0947' => 'cansat', 'CARHR127590' => 'chi', 'CARHR178220' => 'chi', 'CARHR227000' => 'chi', 'Carub.0004s1520' => 'cru', 'Carub.0007s2096' => 'cru', 'Carub.0008s0359' => 'cru', 'Ca_02414_v3' => 'car', 'Ca_22532_v3' => 'car', 'Cc09_g04650' => 'ccan', 'CDE01G0512' => 'cde', 'CDE05G3310' => 'cde', 'CDE06G0911' => 'cde', 'CDE08G1193' => 'cde', 'Cfa001160' => 'cfa', 'Cfa014162' => 'cfa', 'Ciclev10003494m.g' => 'ccl', 'Ciclev10014882m.g' => 'ccl', 'CiPaw.07G130600' => 'cil', 'CiPaw.09G140400' => 'cil', 'CiPaw.10G108000' => 'cil', 'ClCG01G025940' => 'cla', 'COL.COLO4_28196' => 'col', 'COL.COLO4_28201' => 'col', 'Cpa.g.sc1291.2' => 'cpa', 'Cpa.g.sc36.102' => 'cpa', 'CsaV3_6G053150' => 'csa', 'CSS0006084' => 'camsi', 'CSS0007815' => 'camsi', 'CSS0039929' => 'camsi', 'DCAR_001257' => 'dca', 'DCAR_003734' => 'dca', 'Dinv05513' => 'din', 'Dinv17884' => 'din', 'Dinv19792' => 'din', 'Duzib093G2162' => 'dzi', 'Duzib248G0909' => 'dzi', 'ECA232G0028' => 'eca', 'ECA246G0091' => 'eca', 'EL10Ac7g17306' => 'bvu', 'EL10Ac7g17307' => 'bvu', 'EL10Ac8g19100' => 'bvu', 'Eucgr.E04328' => 'egr', 'Eucgr.F03619' => 'egr', 'FAN04G3084' => 'fan', 'FAN08G1261' => 'fan', 'FAN11G2699' => 'fan', 'FAN13G0686' => 'fan', 'FAN16G3010' => 'fan', 'FAN18G0987' => 'fan', 'FAN21G2788' => 'fan', 'FAN25G3375' => 'fan', 'FvH4_3g13330' => 'fve', 'FvH4_5g26560' => 'fve', 'Glyma.08G267800' => 'gma', 'Glyma.09G047900' => 'gma', 'Glyma.15G155300' => 'gma', 'Glyma.16G094100' => 'gma', 'Gohir.A09G123700' => 'ghi', 'Gohir.A11G311800' => 'ghi', 'Gohir.A12G051000' => 'ghi', 'Gohir.D11G328400' => 'ghi', 'Gohir.D12G049200' => 'ghi', 'Gorai.006G138000' => 'gra', 'Gorai.007G359700' => 'gra', 'Gorai.008G052100' => 'gra', 'GSVIVG01010061001' => 'vvi', 'GSVIVG01013454001' => 'vvi', 'HanXRQChr07g0193471' => 'han', 'HanXRQChr09g0257671' => 'han', 'Haze_05190' => 'cav', 'Haze_22884' => 'cav', 'Hma1.2p1_0166F.1_g073530' => 'hma', 'Hma1.2p1_0598F.1_g186720' => 'hma', 'Hma1.2p1_0890F.1_g232990' => 'hma', 'HPP92_003840' => 'vpl', 'HPP92_003841' => 'vpl', 'HPP92_003844' => 'vpl', 'HPP92_010217' => 'vpl', 'HPP92_023792' => 'vpl', 'Hund08737' => 'sun', 'Hund26023' => 'sun', 'Lalb_Chr15g0083641' => 'lal', 'Lalb_Chr18g0051901' => 'lal', 'Lalb_Chr20g0114371' => 'lal', 'Lj1A1152T40' => 'lonja', 'Lj2C341G8' => 'lonja', 'Lj6g0005879' => 'lja', 'Lsat_1_v5_gn_3_104341' => 'lsa', 'Lsat_1_v5_gn_8_107021' => 'lsa', 'Manes.03G072700' => 'mes', 'Manes.05G130300' => 'mes', 'Manes.16G059900' => 'mes', 'Mapoly0001s0176' => 'mpo', 'Mapoly0027s0174' => 'mpo', 'Mapoly0042s0120' => 'mpo', 'Mapoly0045s0137' => 'mpo', 'Mapoly0045s0145' => 'mpo', 'Mapoly0068s0056' => 'mpo', 'Mapoly0089s0060' => 'mpo', 'Mapoly0112s0054' => 'mpo', 'Mapoly0120s0052' => 'mpo', 'MBI02_g17884_MAGBIO' => 'mbi', 'MBI04_g23327_MAGBIO' => 'mbi', 'MD05G1242800' => 'mdo', 'MD10G1224800' => 'mdo', 'Medtr2g437660' => 'mtr', 'Medtr8g070700' => 'mtr', 'MELO3C006997.2' => 'cme', 'Migut.C00337' => 'egut', 'Migut.M02034' => 'egut', 'MSTRG.24894' => 'ama', 'Nitab4.5_0000614g0050' => 'nta', 'Nitab4.5_0001299g0090' => 'nta', 'Nitab4.5_0001815g0050' => 'nta', 'Nitab4.5_0009514g0060' => 'nta', 'Nitab4.5_0011054g0020' => 'nta', 'Nn2g10642' => 'nnu', 'Nn5g31076' => 'nnu', 'Nn5g31119' => 'nnu', 'Nn6g31573' => 'nnu', 'Nn6g33856' => 'nnu', 'Nn7g36409' => 'nnu', 'Nn7g38422' => 'nnu', 'Oeu001580.1' => 'oeu', 'Oeu005125.1' => 'oeu', 'Oeu013507.2' => 'oeu', 'Oeu028735.1' => 'oeu', 'Oeu052923.1' => 'oeu', 'Os02g0712500' => 'osa', 'Os06g0328800' => 'osa', 'Os06g0624700' => 'osa', 'Peaxi162Scf00313g00055' => 'pax', 'Peaxi162Scf00385g00108' => 'pax', 'PGR031G3161' => 'pgr', 'PGR042G3430' => 'pgr', 'PGSC0003DMG400009930' => 'stu', 'PGSC0003DMG400011286' => 'stu', 'PGSC0003DMG400013632' => 'stu', 'Phvul.003G275200' => 'pvu', 'Phvul.009G244900' => 'pvu', 'Potri.001G074600' => 'ptr', 'Potri.003G156600' => 'ptr', 'Potri.005G258900' => 'ptr', 'Pp3c10_23600' => 'ppa', 'Pp3c13_10860' => 'ppa', 'Pp3c17_15940' => 'ppa', 'Pp3c1_12470' => 'ppa', 'Pp3c21_19210' => 'ppa', 'Pp3c22_21200' => 'ppa', 'Pp3c25_6770' => 'ppa', 'Pp3c2_7810' => 'ppa', 'Pp3c3_33280' => 'ppa', 'Pp3c3_35060' => 'ppa', 'Pp3c4_10730' => 'ppa', 'Pp3c8_1720' => 'ppa', 'Pp3c8_1800' => 'ppa', 'Prupe.4G120600' => 'ppe', 'Prupe.5G001800' => 'ppe', 'Psat0s2609g0040' => 'psa', 'Psat1g151680' => 'psa', 'PSO017G1568' => 'pso', 'PSO017G5837' => 'pso', 'PSO170G4079' => 'pso', 'PSO541G4665' => 'pso', 'PSO675G7483' => 'pso', 'QL02p016151' => 'qlo', 'QL11p010844' => 'qlo', 'RcHm_v2.0_Chr5g0021801' => 'rch', 'RcHm_v2.0_Chr7g0217441' => 'rch', 'Rhsim02G0171400' => 'rsi', 'Rhsim06G0001200' => 'rsi', 'Rhsim13G0136100' => 'rsi', 'Sabra01G0052700' => 'sbr', 'Sabra03G0113600' => 'sbr', 'Sabra05G0200500' => 'sbr', 'SalBow7G2352' => 'sbo', 'SalBow8G0237' => 'sbo', 'SalBow8G0944' => 'sbo', 'Sc17g0004320' => 'sci', 'Sc17g0004330' => 'sci', 'Sc17g0004350' => 'sci', 'Sc24g0002830' => 'sci', 'Sed0009513' => 'sed', 'SEGI_14293' => 'sgi', 'SEGI_17172' => 'sgi', 'SGA_v2.0_scaffold161G37848' => 'sas', 'SGA_v2.0_scaffold26G11286' => 'sas', 'SGA_v2.0_scaffold423G51453' => 'sas', 'SHI30729' => 'shi', 'SHI32708' => 'shi', 'SMO351G0529' => 'smo', 'SMO364G0153' => 'smo', 'Solyc02g082140.3' => 'sly', 'Solyc04g082950.4' => 'sly', 'Solyc05g015790.2' => 'sly', 'Solyc10g005200.3' => 'sly', 'Sopen02g026800' => 'spe', 'Sopen04g036580' => 'spe', 'Sopen10g001190' => 'spe', 'Sp2g09480' => 'spa', 'Sp4g15910' => 'spa', 'Sp7g18600' => 'spa', 'TAR381G0011' => 'tar', 'TAR381G0624' => 'tar', 'TAR626G1872' => 'tar', 'TAR627G0873' => 'tar', 'TAR629G1088' => 'tar', 'THA.LOC104806225' => 'tha', 'THA.LOC104813216' => 'tha', 'THA.LOC104824814' => 'tha', 'THA.LOC104825419' => 'tha', 'Thecc.02G001300' => 'tca', 'Thecc.05G159800' => 'tca', 'Thhalv10000855m.g' => 'esa', 'Thhalv10016550m.g' => 'esa', 'Thhalv10024965m.g' => 'esa', 'TPR.G19838' => 'tpr', 'TPR.G28838' => 'tpr', 'TPR.G8447' => 'tpr', 'TWI38G0125' => 'twi', 'TWI63G0426' => 'twi', 'unitig_26.g9852' => 'ugi', 'unitig_46.g17966' => 'ugi', 'unitig_749.g13861' => 'ugi', 'vmacro03572' => 'vma', 'vmacro11019' => 'vma', 'vmacro21739' => 'vma', 'VMungo0251G0699' => 'vmu', 'VMungo1309G0920' => 'vmu', 'Zm00001eb252530' => 'zma', 'Zm00001eb281360' => 'zma', 'Zm00001eb387850' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002041', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002041' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002041', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '325', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002041' ) ), 'genes' => array( 'A01p11920' => 'bna', 'A03p18790' => 'bna', 'A05p11960' => 'bna', 'A06p47010' => 'bna', 'A08p14660' => 'bna', 'Aa31LG6G2600' => 'aar', 'Aa31LG9G13500' => 'aar', 'Aa31LG9G8510' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1522' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.212' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.237' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.238' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.250' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.251' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.252' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.253' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.3508' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.861' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.862' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1717' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1718' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.1721' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2843' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3186' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.3880' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.617' => 'aag', 'Actinidia13063' => 'ach', 'Actinidia15543' => 'ach', 'Actinidia15544' => 'ach', 'Actinidia17095' => 'ach', 'Actinidia31358' => 'ach', 'Actinidia31359' => 'ach', 'Actinidia34698' => 'ach', 'Ah.06g191600' => 'amhyb', 'Ah.09g231450' => 'amhyb', 'Ah.14g084970' => 'amhyb', 'Ah.15g091870' => 'amhyb', 'AL4G29240' => 'aly', 'AL7G33660' => 'aly', 'AL8G14880' => 'aly', 'Aqoxy1G01359' => 'aox', 'Aqoxy5G00942' => 'aox', 'arahy.Tifrunner.gnm1.ann1.KQJ89G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L9B1MS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SABB4F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WKJE7A' => 'arhy', 'AT2G33570' => 'ath', 'AT3G07380' => 'ath', 'AT3G60990' => 'ath', 'AT4G20170' => 'ath', 'AT5G44670' => 'ath', 'AT5G48190' => 'ath', 'ATR0794G071' => 'atr', 'Atru.chr10.240' => 'acertr', 'Atru.chr13.25' => 'acertr', 'AUR62025204' => 'cqu', 'AUR62028971' => 'cqu', 'AUR62040991' => 'cqu', 'AUR62040992' => 'cqu', 'AUR62040993' => 'cqu', 'AUR62042812' => 'cqu', 'AUR62042813' => 'cqu', 'AUR62042978' => 'cqu', 'BcaB01g03930' => 'bca', 'BcaB02g10580' => 'bca', 'BcaB03g11660' => 'bca', 'BcaC01g00658' => 'bca', 'BcaC01g05835' => 'bca', 'BcaC02g11441' => 'bca', 'BcaC06g31598' => 'bca', 'BcaC06g34525' => 'bca', 'BcaC09g51331' => 'bca', 'BcaNung03711' => 'bca', 'BolC1t01380H' => 'bol', 'BolC3t14578H' => 'bol', 'BolC3t20563H' => 'bol', 'BolC4t23122H' => 'bol', 'BolC7t43287H' => 'bol', 'BraA01t01134Z' => 'bra', 'BraA03t11139Z' => 'bra', 'BraA05t20139Z' => 'bra', 'BraA06t27574Z' => 'bra', 'BraA08t33454Z' => 'bra', 'C01p14160' => 'bna', 'C03p21950' => 'bna', 'C03p82820' => 'bna', 'C04p15510' => 'bna', 'C07p27560' => 'bna', 'CAN.G105.24' => 'can', 'CAN.G1330.29' => 'can', 'CAN.G241.3' => 'can', 'CAN.G809.15' => 'can', 'CANSAT35G0947' => 'cansat', 'CARHR127590' => 'chi', 'CARHR178220' => 'chi', 'CARHR227000' => 'chi', 'Carub.0004s1520' => 'cru', 'Carub.0007s2096' => 'cru', 'Carub.0008s0359' => 'cru', 'Ca_02414_v3' => 'car', 'Ca_22532_v3' => 'car', 'Cc09_g04650' => 'ccan', 'CDE01G0512' => 'cde', 'CDE05G3310' => 'cde', 'CDE06G0911' => 'cde', 'CDE08G1193' => 'cde', 'Cfa001160' => 'cfa', 'Cfa014162' => 'cfa', 'Ciclev10003494m.g' => 'ccl', 'Ciclev10014882m.g' => 'ccl', 'CiPaw.07G130600' => 'cil', 'CiPaw.09G140400' => 'cil', 'CiPaw.10G108000' => 'cil', 'ClCG01G025940' => 'cla', 'COL.COLO4_28196' => 'col', 'COL.COLO4_28201' => 'col', 'Cpa.g.sc1291.2' => 'cpa', 'Cpa.g.sc36.102' => 'cpa', 'CsaV3_6G053150' => 'csa', 'CSS0006084' => 'camsi', 'CSS0007815' => 'camsi', 'CSS0039929' => 'camsi', 'DCAR_001257' => 'dca', 'DCAR_003734' => 'dca', 'Dinv05513' => 'din', 'Dinv17884' => 'din', 'Dinv19792' => 'din', 'Duzib093G2162' => 'dzi', 'Duzib248G0909' => 'dzi', 'ECA232G0028' => 'eca', 'ECA246G0091' => 'eca', 'EL10Ac7g17306' => 'bvu', 'EL10Ac7g17307' => 'bvu', 'EL10Ac8g19100' => 'bvu', 'Eucgr.E04328' => 'egr', 'Eucgr.F03619' => 'egr', 'FAN04G3084' => 'fan', 'FAN08G1261' => 'fan', 'FAN11G2699' => 'fan', 'FAN13G0686' => 'fan', 'FAN16G3010' => 'fan', 'FAN18G0987' => 'fan', 'FAN21G2788' => 'fan', 'FAN25G3375' => 'fan', 'FvH4_3g13330' => 'fve', 'FvH4_5g26560' => 'fve', 'Glyma.08G267800' => 'gma', 'Glyma.09G047900' => 'gma', 'Glyma.15G155300' => 'gma', 'Glyma.16G094100' => 'gma', 'Gohir.A09G123700' => 'ghi', 'Gohir.A11G311800' => 'ghi', 'Gohir.A12G051000' => 'ghi', 'Gohir.D11G328400' => 'ghi', 'Gohir.D12G049200' => 'ghi', 'Gorai.006G138000' => 'gra', 'Gorai.007G359700' => 'gra', 'Gorai.008G052100' => 'gra', 'GSVIVG01010061001' => 'vvi', 'GSVIVG01013454001' => 'vvi', 'HanXRQChr07g0193471' => 'han', 'HanXRQChr09g0257671' => 'han', 'Haze_05190' => 'cav', 'Haze_22884' => 'cav', 'Hma1.2p1_0166F.1_g073530' => 'hma', 'Hma1.2p1_0598F.1_g186720' => 'hma', 'Hma1.2p1_0890F.1_g232990' => 'hma', 'HPP92_003840' => 'vpl', 'HPP92_003841' => 'vpl', 'HPP92_003844' => 'vpl', 'HPP92_010217' => 'vpl', 'HPP92_023792' => 'vpl', 'Hund08737' => 'sun', 'Hund26023' => 'sun', 'Lalb_Chr15g0083641' => 'lal', 'Lalb_Chr18g0051901' => 'lal', 'Lalb_Chr20g0114371' => 'lal', 'Lj1A1152T40' => 'lonja', 'Lj2C341G8' => 'lonja', 'Lj6g0005879' => 'lja', 'Lsat_1_v5_gn_3_104341' => 'lsa', 'Lsat_1_v5_gn_8_107021' => 'lsa', 'Manes.03G072700' => 'mes', 'Manes.05G130300' => 'mes', 'Manes.16G059900' => 'mes', 'Mapoly0001s0176' => 'mpo', 'Mapoly0027s0174' => 'mpo', 'Mapoly0042s0120' => 'mpo', 'Mapoly0045s0137' => 'mpo', 'Mapoly0045s0145' => 'mpo', 'Mapoly0068s0056' => 'mpo', 'Mapoly0089s0060' => 'mpo', 'Mapoly0112s0054' => 'mpo', 'Mapoly0120s0052' => 'mpo', 'MBI02_g17884_MAGBIO' => 'mbi', 'MBI04_g23327_MAGBIO' => 'mbi', 'MD05G1242800' => 'mdo', 'MD10G1224800' => 'mdo', 'Medtr2g437660' => 'mtr', 'Medtr8g070700' => 'mtr', 'MELO3C006997.2' => 'cme', 'Migut.C00337' => 'egut', 'Migut.M02034' => 'egut', 'MSTRG.24894' => 'ama', 'Nitab4.5_0000614g0050' => 'nta', 'Nitab4.5_0001299g0090' => 'nta', 'Nitab4.5_0001815g0050' => 'nta', 'Nitab4.5_0009514g0060' => 'nta', 'Nitab4.5_0011054g0020' => 'nta', 'Nn2g10642' => 'nnu', 'Nn5g31076' => 'nnu', 'Nn5g31119' => 'nnu', 'Nn6g31573' => 'nnu', 'Nn6g33856' => 'nnu', 'Nn7g36409' => 'nnu', 'Nn7g38422' => 'nnu', 'Oeu001580.1' => 'oeu', 'Oeu005125.1' => 'oeu', 'Oeu013507.2' => 'oeu', 'Oeu028735.1' => 'oeu', 'Oeu052923.1' => 'oeu', 'Os02g0712500' => 'osa', 'Os06g0328800' => 'osa', 'Os06g0624700' => 'osa', 'Peaxi162Scf00313g00055' => 'pax', 'Peaxi162Scf00385g00108' => 'pax', 'PGR031G3161' => 'pgr', 'PGR042G3430' => 'pgr', 'PGSC0003DMG400009930' => 'stu', 'PGSC0003DMG400011286' => 'stu', 'PGSC0003DMG400013632' => 'stu', 'Phvul.003G275200' => 'pvu', 'Phvul.009G244900' => 'pvu', 'Potri.001G074600' => 'ptr', 'Potri.003G156600' => 'ptr', 'Potri.005G258900' => 'ptr', 'Pp3c10_23600' => 'ppa', 'Pp3c13_10860' => 'ppa', 'Pp3c17_15940' => 'ppa', 'Pp3c1_12470' => 'ppa', 'Pp3c21_19210' => 'ppa', 'Pp3c22_21200' => 'ppa', 'Pp3c25_6770' => 'ppa', 'Pp3c2_7810' => 'ppa', 'Pp3c3_33280' => 'ppa', 'Pp3c3_35060' => 'ppa', 'Pp3c4_10730' => 'ppa', 'Pp3c8_1720' => 'ppa', 'Pp3c8_1800' => 'ppa', 'Prupe.4G120600' => 'ppe', 'Prupe.5G001800' => 'ppe', 'Psat0s2609g0040' => 'psa', 'Psat1g151680' => 'psa', 'PSO017G1568' => 'pso', 'PSO017G5837' => 'pso', 'PSO170G4079' => 'pso', 'PSO541G4665' => 'pso', 'PSO675G7483' => 'pso', 'QL02p016151' => 'qlo', 'QL11p010844' => 'qlo', 'RcHm_v2.0_Chr5g0021801' => 'rch', 'RcHm_v2.0_Chr7g0217441' => 'rch', 'Rhsim02G0171400' => 'rsi', 'Rhsim06G0001200' => 'rsi', 'Rhsim13G0136100' => 'rsi', 'Sabra01G0052700' => 'sbr', 'Sabra03G0113600' => 'sbr', 'Sabra05G0200500' => 'sbr', 'SalBow7G2352' => 'sbo', 'SalBow8G0237' => 'sbo', 'SalBow8G0944' => 'sbo', 'Sc17g0004320' => 'sci', 'Sc17g0004330' => 'sci', 'Sc17g0004350' => 'sci', 'Sc24g0002830' => 'sci', 'Sed0009513' => 'sed', 'SEGI_14293' => 'sgi', 'SEGI_17172' => 'sgi', 'SGA_v2.0_scaffold161G37848' => 'sas', 'SGA_v2.0_scaffold26G11286' => 'sas', 'SGA_v2.0_scaffold423G51453' => 'sas', 'SHI30729' => 'shi', 'SHI32708' => 'shi', 'SMO351G0529' => 'smo', 'SMO364G0153' => 'smo', 'Solyc02g082140.3' => 'sly', 'Solyc04g082950.4' => 'sly', 'Solyc05g015790.2' => 'sly', 'Solyc10g005200.3' => 'sly', 'Sopen02g026800' => 'spe', 'Sopen04g036580' => 'spe', 'Sopen10g001190' => 'spe', 'Sp2g09480' => 'spa', 'Sp4g15910' => 'spa', 'Sp7g18600' => 'spa', 'TAR381G0011' => 'tar', 'TAR381G0624' => 'tar', 'TAR626G1872' => 'tar', 'TAR627G0873' => 'tar', 'TAR629G1088' => 'tar', 'THA.LOC104806225' => 'tha', 'THA.LOC104813216' => 'tha', 'THA.LOC104824814' => 'tha', 'THA.LOC104825419' => 'tha', 'Thecc.02G001300' => 'tca', 'Thecc.05G159800' => 'tca', 'Thhalv10000855m.g' => 'esa', 'Thhalv10016550m.g' => 'esa', 'Thhalv10024965m.g' => 'esa', 'TPR.G19838' => 'tpr', 'TPR.G28838' => 'tpr', 'TPR.G8447' => 'tpr', 'TWI38G0125' => 'twi', 'TWI63G0426' => 'twi', 'unitig_26.g9852' => 'ugi', 'unitig_46.g17966' => 'ugi', 'unitig_749.g13861' => 'ugi', 'vmacro03572' => 'vma', 'vmacro11019' => 'vma', 'vmacro21739' => 'vma', 'VMungo0251G0699' => 'vmu', 'VMungo1309G0920' => 'vmu', 'Zm00001eb252530' => 'zma', 'Zm00001eb281360' => 'zma', 'Zm00001eb387850' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002041' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002041' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002041' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002041' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151