Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p11920 Brassica napus
A03p18790 Brassica napus
A05p11960 Brassica napus
A06p47010 Brassica napus
A08p14660 Brassica napus
Aa31LG6G2600 Aethionema arabicum
Aa31LG9G13500 Aethionema arabicum
Aa31LG9G8510 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.212 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.237 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.238 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.250 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.251 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.252 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.253 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.3508 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.861 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_117.862 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.1717 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.1718 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.1721 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.2843 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.3186 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.3880 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.617 Anthoceros agrestis
Actinidia13063 Actinidia chinensis
Actinidia15543 Actinidia chinensis
Actinidia15544 Actinidia chinensis
Actinidia17095 Actinidia chinensis
Actinidia31358 Actinidia chinensis
Actinidia31359 Actinidia chinensis
Actinidia34698 Actinidia chinensis
Ah.06g191600 Amaranthus hybridus
Ah.09g231450 Amaranthus hybridus
Ah.14g084970 Amaranthus hybridus
Ah.15g091870 Amaranthus hybridus
AL4G29240 Arabidopsis lyrata
AL7G33660 Arabidopsis lyrata
AL8G14880 Arabidopsis lyrata
Aqoxy1G01359 Aquilegia oxysepala
Aqoxy5G00942 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.KQJ89G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L9B1MS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SABB4F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WKJE7A Arachis hypogaea
AT2G33570 Arabidopsis thaliana
AT3G07380 Arabidopsis thaliana
AT3G60990 Arabidopsis thaliana
AT4G20170 Arabidopsis thaliana
AT5G44670 Arabidopsis thaliana
AT5G48190 Arabidopsis thaliana
ATR0794G071 Amborella trichopoda
Atru.chr10.240 Acer truncatum
Atru.chr13.25 Acer truncatum
AUR62025204 Chenopodium quinoa
AUR62028971 Chenopodium quinoa
AUR62040991 Chenopodium quinoa
AUR62040992 Chenopodium quinoa
AUR62040993 Chenopodium quinoa
AUR62042812 Chenopodium quinoa
AUR62042813 Chenopodium quinoa
AUR62042978 Chenopodium quinoa
BcaB01g03930 Brassica carinata
BcaB02g10580 Brassica carinata
BcaB03g11660 Brassica carinata
BcaC01g00658 Brassica carinata
BcaC01g05835 Brassica carinata
BcaC02g11441 Brassica carinata
BcaC06g31598 Brassica carinata
BcaC06g34525 Brassica carinata
BcaC09g51331 Brassica carinata
BcaNung03711 Brassica carinata
BolC1t01380H Brassica oleracea
BolC3t14578H Brassica oleracea
BolC3t20563H Brassica oleracea
BolC4t23122H Brassica oleracea
BolC7t43287H Brassica oleracea
BraA01t01134Z Brassica rapa
BraA03t11139Z Brassica rapa
BraA05t20139Z Brassica rapa
BraA06t27574Z Brassica rapa
BraA08t33454Z Brassica rapa
C01p14160 Brassica napus
C03p21950 Brassica napus
C03p82820 Brassica napus
C04p15510 Brassica napus
C07p27560 Brassica napus
CAN.G105.24 Capsicum annuum
CAN.G1330.29 Capsicum annuum
CAN.G241.3 Capsicum annuum
CAN.G809.15 Capsicum annuum
CANSAT35G0947 Cannabis sativa
CARHR127590 Cardamine hirsuta
CARHR178220 Cardamine hirsuta
CARHR227000 Cardamine hirsuta
Carub.0004s1520 Capsella rubella
Carub.0007s2096 Capsella rubella
Carub.0008s0359 Capsella rubella
Ca_02414_v3 Cicer arietinum L.
Ca_22532_v3 Cicer arietinum L.
Cc09_g04650 Coffea canephora
CDE01G0512 Ceratophyllum demersum
CDE05G3310 Ceratophyllum demersum
CDE06G0911 Ceratophyllum demersum
CDE08G1193 Ceratophyllum demersum
Cfa001160 Carpinus fangiana
Cfa014162 Carpinus fangiana
Ciclev10003494m.g Citrus clementina
Ciclev10014882m.g Citrus clementina
CiPaw.07G130600 Carya illinoinensis
CiPaw.09G140400 Carya illinoinensis
CiPaw.10G108000 Carya illinoinensis
ClCG01G025940 Citrullus lanatus
COL.COLO4_28196 Corchorus olitorius
COL.COLO4_28201 Corchorus olitorius
Cpa.g.sc1291.2 Carica papaya
Cpa.g.sc36.102 Carica papaya
CsaV3_6G053150 Cucumis sativus L.
CSS0006084 Camellia sinensis var. sinensis
CSS0007815 Camellia sinensis var. sinensis
CSS0039929 Camellia sinensis var. sinensis
DCAR_001257 Daucus carota
DCAR_003734 Daucus carota
Dinv05513 Davidia involucrata
Dinv17884 Davidia involucrata
Dinv19792 Davidia involucrata
Duzib093G2162 Durio zibethinus
Duzib248G0909 Durio zibethinus
ECA232G0028 Erigeron canadensis
ECA246G0091 Erigeron canadensis
EL10Ac7g17306 Beta vulgaris
EL10Ac7g17307 Beta vulgaris
EL10Ac8g19100 Beta vulgaris
Eucgr.E04328 Eucalyptus grandis
Eucgr.F03619 Eucalyptus grandis
FAN04G3084 Fragaria x ananassa
FAN08G1261 Fragaria x ananassa
FAN11G2699 Fragaria x ananassa
FAN13G0686 Fragaria x ananassa
FAN16G3010 Fragaria x ananassa
FAN18G0987 Fragaria x ananassa
FAN21G2788 Fragaria x ananassa
FAN25G3375 Fragaria x ananassa
FvH4_3g13330 Fragaria vesca
FvH4_5g26560 Fragaria vesca
Glyma.08G267800 Glycine max
Glyma.09G047900 Glycine max
Glyma.15G155300 Glycine max
Glyma.16G094100 Glycine max
Gohir.A09G123700 Gossypium hirsutum
Gohir.A11G311800 Gossypium hirsutum
Gohir.A12G051000 Gossypium hirsutum
Gohir.D11G328400 Gossypium hirsutum
Gohir.D12G049200 Gossypium hirsutum
Gorai.006G138000 Gossypium raimondii
Gorai.007G359700 Gossypium raimondii
Gorai.008G052100 Gossypium raimondii
GSVIVG01010061001 Vitis vinifera
GSVIVG01013454001 Vitis vinifera
HanXRQChr07g0193471 Helianthus annuus
HanXRQChr09g0257671 Helianthus annuus
Haze_05190 Corylus avellana
Haze_22884 Corylus avellana
Hma1.2p1_0166F.1_g073530 Hydrangea macrophylla
Hma1.2p1_0598F.1_g186720 Hydrangea macrophylla
Hma1.2p1_0890F.1_g232990 Hydrangea macrophylla
HPP92_003840 Vanilla planifolia
HPP92_003841 Vanilla planifolia
HPP92_003844 Vanilla planifolia
HPP92_010217 Vanilla planifolia
HPP92_023792 Vanilla planifolia
Hund08737 Selenicereus undatus
Hund26023 Selenicereus undatus
Lalb_Chr15g0083641 Lupinus albus
Lalb_Chr18g0051901 Lupinus albus
Lalb_Chr20g0114371 Lupinus albus
Lj1A1152T40 Lonicera japonica
Lj2C341G8 Lonicera japonica
Lj6g0005879 Lotus japonicus
Lsat_1_v5_gn_3_104341 Lactuca sativa
Lsat_1_v5_gn_8_107021 Lactuca sativa
Manes.03G072700 Manihot esculenta
Manes.05G130300 Manihot esculenta
Manes.16G059900 Manihot esculenta
Mapoly0001s0176 Marchantia polymorpha
Mapoly0027s0174 Marchantia polymorpha
Mapoly0042s0120 Marchantia polymorpha
Mapoly0045s0137 Marchantia polymorpha
Mapoly0045s0145 Marchantia polymorpha
Mapoly0068s0056 Marchantia polymorpha
Mapoly0089s0060 Marchantia polymorpha
Mapoly0112s0054 Marchantia polymorpha
Mapoly0120s0052 Marchantia polymorpha
MBI02_g17884_MAGBIO Magnolia biondii
MBI04_g23327_MAGBIO Magnolia biondii
MD05G1242800 Malus domestica
MD10G1224800 Malus domestica
Medtr2g437660 Medicago truncatula
Medtr8g070700 Medicago truncatula
MELO3C006997.2 Cucumis melo
Migut.C00337 Erythranthe guttata
Migut.M02034 Erythranthe guttata
MSTRG.24894 Avicennia marina
Nitab4.5_0000614g0050 Nicotiana tabacum
Nitab4.5_0001299g0090 Nicotiana tabacum
Nitab4.5_0001815g0050 Nicotiana tabacum
Nitab4.5_0009514g0060 Nicotiana tabacum
Nitab4.5_0011054g0020 Nicotiana tabacum
Nn2g10642 Nelumbo nucifera
Nn5g31076 Nelumbo nucifera
Nn5g31119 Nelumbo nucifera
Nn6g31573 Nelumbo nucifera
Nn6g33856 Nelumbo nucifera
Nn7g36409 Nelumbo nucifera
Nn7g38422 Nelumbo nucifera
Oeu001580.1 Olea europaea
Oeu005125.1 Olea europaea
Oeu013507.2 Olea europaea
Oeu028735.1 Olea europaea
Oeu052923.1 Olea europaea
Os02g0712500 Oryza sativa ssp. japonica
Os06g0328800 Oryza sativa ssp. japonica
Os06g0624700 Oryza sativa ssp. japonica
Peaxi162Scf00313g00055 Petunia axillaris
Peaxi162Scf00385g00108 Petunia axillaris
PGR031G3161 Punica granatum
PGR042G3430 Punica granatum
PGSC0003DMG400009930 Solanum tuberosum
PGSC0003DMG400011286 Solanum tuberosum
PGSC0003DMG400013632 Solanum tuberosum
Phvul.003G275200 Phaseolus vulgaris
Phvul.009G244900 Phaseolus vulgaris
Potri.001G074600 Populus trichocarpa
Potri.003G156600 Populus trichocarpa
Potri.005G258900 Populus trichocarpa
Pp3c10_23600 Physcomitrium patens
Pp3c13_10860 Physcomitrium patens
Pp3c17_15940 Physcomitrium patens
Pp3c1_12470 Physcomitrium patens
Pp3c21_19210 Physcomitrium patens
Pp3c22_21200 Physcomitrium patens
Pp3c25_6770 Physcomitrium patens
Pp3c2_7810 Physcomitrium patens
Pp3c3_33280 Physcomitrium patens
Pp3c3_35060 Physcomitrium patens
Pp3c4_10730 Physcomitrium patens
Pp3c8_1720 Physcomitrium patens
Pp3c8_1800 Physcomitrium patens
Prupe.4G120600 Prunus persica
Prupe.5G001800 Prunus persica
Psat0s2609g0040 Pisum sativum
Psat1g151680 Pisum sativum
PSO017G1568 Papaver somniferum
PSO017G5837 Papaver somniferum
PSO170G4079 Papaver somniferum
PSO541G4665 Papaver somniferum
PSO675G7483 Papaver somniferum
QL02p016151 Quercus lobata
QL11p010844 Quercus lobata
RcHm_v2.0_Chr5g0021801 Rosa chinensis
RcHm_v2.0_Chr7g0217441 Rosa chinensis
Rhsim02G0171400 Rhododendron simsii
Rhsim06G0001200 Rhododendron simsii
Rhsim13G0136100 Rhododendron simsii
Sabra01G0052700 Salix brachista
Sabra03G0113600 Salix brachista
Sabra05G0200500 Salix brachista
SalBow7G2352 Salvia bowleyana
SalBow8G0237 Salvia bowleyana
SalBow8G0944 Salvia bowleyana
Sc17g0004320 Simmondsia chinensis
Sc17g0004330 Simmondsia chinensis
Sc17g0004350 Simmondsia chinensis
Sc24g0002830 Simmondsia chinensis
Sed0009513 Sechium edule
SEGI_14293 Sequoiadendron giganteum
SEGI_17172 Sequoiadendron giganteum
SGA_v2.0_scaffold161G37848 Striga asiatica
SGA_v2.0_scaffold26G11286 Striga asiatica
SGA_v2.0_scaffold423G51453 Striga asiatica
SHI30729 Sapria himalayana
SHI32708 Sapria himalayana
SMO351G0529 Selaginella moellendorffii
SMO364G0153 Selaginella moellendorffii
Solyc02g082140.3 Solanum lycopersicum
Solyc04g082950.4 Solanum lycopersicum
Solyc05g015790.2 Solanum lycopersicum
Solyc10g005200.3 Solanum lycopersicum
Sopen02g026800 Solanum pennellii
Sopen04g036580 Solanum pennellii
Sopen10g001190 Solanum pennellii
Sp2g09480 Schrenkiella parvula
Sp4g15910 Schrenkiella parvula
Sp7g18600 Schrenkiella parvula
TAR381G0011 Trochodendron aralioides
TAR381G0624 Trochodendron aralioides
TAR626G1872 Trochodendron aralioides
TAR627G0873 Trochodendron aralioides
TAR629G1088 Trochodendron aralioides
THA.LOC104806225 Tarenaya hassleriana
THA.LOC104813216 Tarenaya hassleriana
THA.LOC104824814 Tarenaya hassleriana
THA.LOC104825419 Tarenaya hassleriana
Thecc.02G001300 Theobroma cacao
Thecc.05G159800 Theobroma cacao
Thhalv10000855m.g Eutrema salsugineum
Thhalv10016550m.g Eutrema salsugineum
Thhalv10024965m.g Eutrema salsugineum
TPR.G19838 Trifolium pratense
TPR.G28838 Trifolium pratense
TPR.G8447 Trifolium pratense
TWI38G0125 Tripterygium wilfordii
TWI63G0426 Tripterygium wilfordii
unitig_26.g9852 Utricularia gibba
unitig_46.g17966 Utricularia gibba
unitig_749.g13861 Utricularia gibba
vmacro03572 Vaccinium macrocarpon
vmacro11019 Vaccinium macrocarpon
vmacro21739 Vaccinium macrocarpon
VMungo0251G0699 Vigna mungo
VMungo1309G0920 Vigna mungo
Zm00001eb252530 Zea mays
Zm00001eb281360 Zea mays
Zm00001eb387850 Zea mays

User provided reference genes

Program Settings