Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002005', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '330', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p08550' => 'bna', 'A05p15780' => 'bna', 'A08p35710' => 'bna', 'A10p21570' => 'bna', 'Aa31LG11G11930' => 'aar', 'Aa31LG5G6870' => 'aar', 'Actinidia16071' => 'ach', 'Actinidia16072' => 'ach', 'Actinidia25146' => 'ach', 'Actinidia37843' => 'ach', 'Actinidia38829' => 'ach', 'Ah.13g070760' => 'amhyb', 'AL1G17480' => 'aly', 'AL1G51410' => 'aly', 'AL4G24370' => 'aly', 'Aqoxy3G00499' => 'aox', 'Aqoxy4G02664' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7WLH9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M37KEN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNMS29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU7E8L' => 'arhy', 'AT1G07330' => 'ath', 'AT2G29620' => 'ath', 'AT5G17910' => 'ath', 'ATR0307G088' => 'atr', 'Atru.chr2.1605' => 'acertr', 'Atru.chr2.1606' => 'acertr', 'Atru.chr3.4274' => 'acertr', 'AUR62001686' => 'cqu', 'AUR62007203' => 'cqu', 'AUR62018799' => 'cqu', 'AUR62020096' => 'cqu', 'AUR62037108' => 'cqu', 'AUR62042367' => 'cqu', 'BcaB01g04923' => 'bca', 'BcaB01g05164' => 'bca', 'BcaB02g10266' => 'bca', 'BcaB03g13401' => 'bca', 'BcaB05g22517' => 'bca', 'BcaB08g36725' => 'bca', 'BcaC04g18741' => 'bca', 'BolC3t13486H' => 'bol', 'BolC4t23648H' => 'bol', 'BolC8t47096H' => 'bol', 'BolC9t58754H' => 'bol', 'BraA03t10181Z' => 'bra', 'BraA05t20492Z' => 'bra', 'BraA08t35478Z' => 'bra', 'BraA10t44218Z' => 'bra', 'C03p09980' => 'bna', 'C04p21220' => 'bna', 'C08p02960' => 'bna', 'C09p59060' => 'bna', 'C09p59080' => 'bna', 'CAN.G128.110' => 'can', 'CAN.G483.2' => 'can', 'CAN.G85.12' => 'can', 'CANSAT54G0486' => 'cansat', 'CANSAT78G2106' => 'cansat', 'CARHR122940' => 'chi', 'CARHR195210' => 'chi', 'Carub.0001s0663' => 'cru', 'Carub.0004s1071' => 'cru', 'Carub.0006s1612' => 'cru', 'Ca_03430_v3' => 'car', 'Ca_05585_v3' => 'car', 'Ca_14909_v3' => 'car', 'Cc00_g08730' => 'ccan', 'Cc01_g13930' => 'ccan', 'CDE08G0232' => 'cde', 'CDE09G0963' => 'cde', 'CDE09G1138' => 'cde', 'Cfa011652' => 'cfa', 'Cfa019886' => 'cfa', 'Ciclev10029861m.g' => 'ccl', 'Ciclev10030490m.g' => 'ccl', 'CiPaw.09G053000' => 'cil', 'CiPaw.10G044600' => 'cil', 'CiPaw.11G022800' => 'cil', 'CiPaw.13G080900' => 'cil', 'ClCG03G000910' => 'cla', 'ClCG04G004830' => 'cla', 'ClCG09G013260' => 'cla', 'COL.COLO4_19108' => 'col', 'COL.COLO4_33471' => 'col', 'Cpa.g.sc112.55' => 'cpa', 'Cpa.g.sc117.54' => 'cpa', 'Cpa.g.sc73.39' => 'cpa', 'CsaV3_1G036030' => 'csa', 'CsaV3_4G031680' => 'csa', 'CSS0001466' => 'camsi', 'CSS0028379' => 'camsi', 'CSS0037844' => 'camsi', 'CSS0044657' => 'camsi', 'DCAR_005896' => 'dca', 'DCAR_013506' => 'dca', 'DCAR_020635' => 'dca', 'Dinv14553' => 'din', 'Dinv14554' => 'din', 'Dinv28616' => 'din', 'Dinv28617' => 'din', 'Dinv37045' => 'din', 'Duzib106G2027' => 'dzi', 'Duzib128G1239' => 'dzi', 'Duzib128G1312' => 'dzi', 'Duzib128G1593' => 'dzi', 'Duzib168G1408' => 'dzi', 'Duzib177G0589' => 'dzi', 'ECA236G4805' => 'eca', 'ECA247G0136' => 'eca', 'ECA247G0685' => 'eca', 'ECA248G0533' => 'eca', 'EL10Ac9g21403' => 'bvu', 'Eucgr.A02165' => 'egr', 'FAN11G0187' => 'fan', 'FAN15G1233' => 'fan', 'FAN16G2282' => 'fan', 'FAN19G0929' => 'fan', 'FAN20G0782' => 'fan', 'FAN21G2515' => 'fan', 'FAN24G1358' => 'fan', 'FAN25G0685' => 'fan', 'FAN26G2169' => 'fan', 'FAN27G2381' => 'fan', 'FAN28G0247' => 'fan', 'FvH4_1g29420' => 'fve', 'FvH4_2g10091' => 'fve', 'FvH4_2g10092' => 'fve', 'FvH4_3g38180' => 'fve', 'Glyma.02G225200' => 'gma', 'Glyma.03G004800' => 'gma', 'Glyma.14G192000' => 'gma', 'Glyma.18G065500' => 'gma', 'Glyma.19G121300' => 'gma', 'Gohir.A03G049200' => 'ghi', 'Gohir.A05G090000' => 'ghi', 'Gohir.A08G002050' => 'ghi', 'Gohir.A11G224214' => 'ghi', 'Gohir.A13G097000' => 'ghi', 'Gohir.A13G160000' => 'ghi', 'Gohir.D03G118000' => 'ghi', 'Gohir.D05G090900' => 'ghi', 'Gohir.D08G012750' => 'ghi', 'Gohir.D11G237400' => 'ghi', 'Gohir.D13G102100' => 'ghi', 'Gohir.D13G165200' => 'ghi', 'Gorai.003G124500' => 'gra', 'Gorai.004G006800' => 'gra', 'Gorai.007G250800' => 'gra', 'Gorai.009G093400' => 'gra', 'Gorai.013G114300' => 'gra', 'Gorai.013G197500' => 'gra', 'GSVIVG01029896001' => 'vvi', 'HanXRQChr00c0297g0573161' => 'han', 'HanXRQChr10g0293151' => 'han', 'HanXRQChr10g0300581' => 'han', 'HanXRQChr11g0337951' => 'han', 'Haze_20366' => 'cav', 'Haze_24256' => 'cav', 'Hma1.2p1_0165F.1_g073333' => 'hma', 'Hma1.2p1_1010F.1_g247400' => 'hma', 'Hma1.2p1_1291F.1_g273630' => 'hma', 'HPP92_005921' => 'vpl', 'HPP92_005925' => 'vpl', 'HPP92_008478' => 'vpl', 'Hund15172' => 'sun', 'Hund18858' => 'sun', 'Lalb_Chr04g0252341' => 'lal', 'Lalb_Chr04g0252351' => 'lal', 'Lalb_Chr04g0252361' => 'lal', 'Lalb_Chr10g0103251' => 'lal', 'Lalb_Chr10g0103261' => 'lal', 'Lalb_Chr14g0365081' => 'lal', 'Lalb_Chr15g0082731' => 'lal', 'Lalb_Chr15g0082741' => 'lal', 'Lalb_Chr17g0344981' => 'lal', 'Lalb_Chr18g0050791' => 'lal', 'Lj1A141G50' => 'lonja', 'Lj1g0005282' => 'lja', 'Lj1P1075T62' => 'lonja', 'Lj2P1077T57' => 'lonja', 'Lj6g0005224' => 'lja', 'LjContig00155g0014668' => 'lja', 'Lsat_1_v5_gn_8_85341' => 'lsa', 'Lsat_1_v5_gn_9_112680' => 'lsa', 'Lsat_1_v5_gn_9_26961' => 'lsa', 'Lsat_1_v5_gn_9_30121' => 'lsa', 'Manes.01G164500' => 'mes', 'Manes.02G121900' => 'mes', 'Manes.08G155700' => 'mes', 'Manes.09G134400' => 'mes', 'MBI13_g15011_MAGBIO' => 'mbi', 'MBI19_g06602_MAGBIO' => 'mbi', 'MD03G1075800' => 'mdo', 'MD05G1057800' => 'mdo', 'MD10G1065700' => 'mdo', 'MD11G1080500' => 'mdo', 'MD12G1015000' => 'mdo', 'MD14G1012900' => 'mdo', 'Medtr3g462910' => 'mtr', 'Medtr5g069750' => 'mtr', 'Medtr7g087490' => 'mtr', 'MELO3C008875.2' => 'cme', 'MELO3C020564.2' => 'cme', 'Migut.J01577' => 'egut', 'Migut.N00881' => 'egut', 'Migut.N01846' => 'egut', 'MSTRG.10764' => 'ama', 'MSTRG.19759' => 'ama', 'MSTRG.6275' => 'ama', 'Nitab4.5_0000062g0420' => 'nta', 'Nitab4.5_0000102g0160' => 'nta', 'Nitab4.5_0000123g0050' => 'nta', 'Nitab4.5_0003808g0050' => 'nta', 'Nitab4.5_0003808g0060' => 'nta', 'Nitab4.5_0005500g0020' => 'nta', 'Nitab4.5_0007999g0010' => 'nta', 'Nn2g11384' => 'nnu', 'Nn7g38016' => 'nnu', 'Oeu023030.1' => 'oeu', 'Oeu044220.1' => 'oeu', 'Oeu049274.1' => 'oeu', 'Oeu060743.1' => 'oeu', 'Oeu060745.1' => 'oeu', 'Os01g0812050' => 'osa', 'Os03g0862000' => 'osa', 'Os05g0490400' => 'osa', 'Os07g0472300' => 'osa', 'Os11g0130800' => 'osa', 'Os12g0127650' => 'osa', 'Peaxi162Scf00003g05364' => 'pax', 'Peaxi162Scf00153g01023' => 'pax', 'Peaxi162Scf00216g00115' => 'pax', 'PGR042G3731' => 'pgr', 'PGR119G2260' => 'pgr', 'PGSC0003DMG400004163' => 'stu', 'PGSC0003DMG400019177' => 'stu', 'PGSC0003DMG400028204' => 'stu', 'Phvul.001G101800' => 'pvu', 'Phvul.006G065500' => 'pvu', 'Phvul.008G262800' => 'pvu', 'Potri.001G249000' => 'ptr', 'Potri.009G043000' => 'ptr', 'Potri.013G068800' => 'ptr', 'Potri.019G044500' => 'ptr', 'Prupe.6G060900' => 'ppe', 'Prupe.7G025700' => 'ppe', 'Prupe.8G087600' => 'ppe', 'Psat2g059400' => 'psa', 'Psat3g084320' => 'psa', 'Psat5g160800' => 'psa', 'PSO210G3936' => 'pso', 'PSO210G7347' => 'pso', 'PSO339G0059' => 'pso', 'PSO339G2450' => 'pso', 'PSO384G2823' => 'pso', 'PSO532G0028' => 'pso', 'PSO541G2770' => 'pso', 'PSO801G0543' => 'pso', 'QL01p026846' => 'qlo', 'QL07p015943' => 'qlo', 'RcHm_v2.0_Chr3g0495491' => 'rch', 'RcHm_v2.0_Chr5g0068611' => 'rch', 'RcHm_v2.0_Chr6g0267051' => 'rch', 'Rhsim13G0072200' => 'rsi', 'RhsimUnG0023200' => 'rsi', 'Sabra16G0151100' => 'sbr', 'Sabra19G0054900' => 'sbr', 'SalBow1G2425' => 'sbo', 'SalBow1G6156' => 'sbo', 'SalBow6G5301' => 'sbo', 'SalBow6G5969' => 'sbo', 'Sc01g0007860' => 'sci', 'Sc06g0008410' => 'sci', 'Sc12g0000860' => 'sci', 'Sc22g0002340' => 'sci', 'Sed0005780' => 'sed', 'Sed0008864' => 'sed', 'Sed0026327' => 'sed', 'SEGI_17680' => 'sgi', 'SGA_v2.0_scaffold120G32945' => 'sas', 'SGA_v2.0_scaffold240G44144' => 'sas', 'SGA_v2.0_scaffold66G22332' => 'sas', 'Solyc06g005960.4' => 'sly', 'Solyc10g076650.3' => 'sly', 'Solyc10g076995.1' => 'sly', 'Solyc10g077000.3' => 'sly', 'Solyc10g081200.1' => 'sly', 'Sopen06g001930' => 'spe', 'Sopen10g028260' => 'spe', 'Sopen10g028680' => 'spe', 'Sopen10g031700' => 'spe', 'Sp4g12330' => 'spa', 'Sp6g26360' => 'spa', 'TAR369G0234' => 'tar', 'TAR369G1119' => 'tar', 'TAR623G1062' => 'tar', 'THA.LOC104800720' => 'tha', 'THA.LOC104802888' => 'tha', 'THA.LOC104820809' => 'tha', 'THA.LOC104826297' => 'tha', 'Thecc.05G236600' => 'tca', 'Thecc.09G305600' => 'tca', 'Thhalv10009482m.g' => 'esa', 'Thhalv10012439m.g' => 'esa', 'Thhalv10017594m.g' => 'esa', 'TPR.G13293' => 'tpr', 'TPR.G23643' => 'tpr', 'TPR.G24037' => 'tpr', 'TWI31G1266' => 'twi', 'TWI32G1337' => 'twi', 'TWI34G0003' => 'twi', 'TWI75G0348' => 'twi', 'TWI79G1268' => 'twi', 'unitig_21.g20665' => 'ugi', 'unitig_22.g5220' => 'ugi', 'unitig_8.g3691' => 'ugi', 'unitig_8.g3692' => 'ugi', 'unitig_8.g3693' => 'ugi', 'vmacro07618' => 'vma', 'VMungo0540G2490' => 'vmu', 'VMungo0647G2111' => 'vmu', 'VMungo1383G0089' => 'vmu', 'VMungo1383G0221' => 'vmu', 'Zm00001eb065350' => 'zma', 'Zm00001eb093510' => 'zma', 'Zm00001eb104840' => 'zma', 'Zm00001eb150100' => 'zma', 'Zm00001eb150130' => 'zma', 'Zm00001eb291270' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002005', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002005' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002005', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '330', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002005' ) ), 'genes' => array( 'A03p08550' => 'bna', 'A05p15780' => 'bna', 'A08p35710' => 'bna', 'A10p21570' => 'bna', 'Aa31LG11G11930' => 'aar', 'Aa31LG5G6870' => 'aar', 'Actinidia16071' => 'ach', 'Actinidia16072' => 'ach', 'Actinidia25146' => 'ach', 'Actinidia37843' => 'ach', 'Actinidia38829' => 'ach', 'Ah.13g070760' => 'amhyb', 'AL1G17480' => 'aly', 'AL1G51410' => 'aly', 'AL4G24370' => 'aly', 'Aqoxy3G00499' => 'aox', 'Aqoxy4G02664' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7WLH9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M37KEN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNMS29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU7E8L' => 'arhy', 'AT1G07330' => 'ath', 'AT2G29620' => 'ath', 'AT5G17910' => 'ath', 'ATR0307G088' => 'atr', 'Atru.chr2.1605' => 'acertr', 'Atru.chr2.1606' => 'acertr', 'Atru.chr3.4274' => 'acertr', 'AUR62001686' => 'cqu', 'AUR62007203' => 'cqu', 'AUR62018799' => 'cqu', 'AUR62020096' => 'cqu', 'AUR62037108' => 'cqu', 'AUR62042367' => 'cqu', 'BcaB01g04923' => 'bca', 'BcaB01g05164' => 'bca', 'BcaB02g10266' => 'bca', 'BcaB03g13401' => 'bca', 'BcaB05g22517' => 'bca', 'BcaB08g36725' => 'bca', 'BcaC04g18741' => 'bca', 'BolC3t13486H' => 'bol', 'BolC4t23648H' => 'bol', 'BolC8t47096H' => 'bol', 'BolC9t58754H' => 'bol', 'BraA03t10181Z' => 'bra', 'BraA05t20492Z' => 'bra', 'BraA08t35478Z' => 'bra', 'BraA10t44218Z' => 'bra', 'C03p09980' => 'bna', 'C04p21220' => 'bna', 'C08p02960' => 'bna', 'C09p59060' => 'bna', 'C09p59080' => 'bna', 'CAN.G128.110' => 'can', 'CAN.G483.2' => 'can', 'CAN.G85.12' => 'can', 'CANSAT54G0486' => 'cansat', 'CANSAT78G2106' => 'cansat', 'CARHR122940' => 'chi', 'CARHR195210' => 'chi', 'Carub.0001s0663' => 'cru', 'Carub.0004s1071' => 'cru', 'Carub.0006s1612' => 'cru', 'Ca_03430_v3' => 'car', 'Ca_05585_v3' => 'car', 'Ca_14909_v3' => 'car', 'Cc00_g08730' => 'ccan', 'Cc01_g13930' => 'ccan', 'CDE08G0232' => 'cde', 'CDE09G0963' => 'cde', 'CDE09G1138' => 'cde', 'Cfa011652' => 'cfa', 'Cfa019886' => 'cfa', 'Ciclev10029861m.g' => 'ccl', 'Ciclev10030490m.g' => 'ccl', 'CiPaw.09G053000' => 'cil', 'CiPaw.10G044600' => 'cil', 'CiPaw.11G022800' => 'cil', 'CiPaw.13G080900' => 'cil', 'ClCG03G000910' => 'cla', 'ClCG04G004830' => 'cla', 'ClCG09G013260' => 'cla', 'COL.COLO4_19108' => 'col', 'COL.COLO4_33471' => 'col', 'Cpa.g.sc112.55' => 'cpa', 'Cpa.g.sc117.54' => 'cpa', 'Cpa.g.sc73.39' => 'cpa', 'CsaV3_1G036030' => 'csa', 'CsaV3_4G031680' => 'csa', 'CSS0001466' => 'camsi', 'CSS0028379' => 'camsi', 'CSS0037844' => 'camsi', 'CSS0044657' => 'camsi', 'DCAR_005896' => 'dca', 'DCAR_013506' => 'dca', 'DCAR_020635' => 'dca', 'Dinv14553' => 'din', 'Dinv14554' => 'din', 'Dinv28616' => 'din', 'Dinv28617' => 'din', 'Dinv37045' => 'din', 'Duzib106G2027' => 'dzi', 'Duzib128G1239' => 'dzi', 'Duzib128G1312' => 'dzi', 'Duzib128G1593' => 'dzi', 'Duzib168G1408' => 'dzi', 'Duzib177G0589' => 'dzi', 'ECA236G4805' => 'eca', 'ECA247G0136' => 'eca', 'ECA247G0685' => 'eca', 'ECA248G0533' => 'eca', 'EL10Ac9g21403' => 'bvu', 'Eucgr.A02165' => 'egr', 'FAN11G0187' => 'fan', 'FAN15G1233' => 'fan', 'FAN16G2282' => 'fan', 'FAN19G0929' => 'fan', 'FAN20G0782' => 'fan', 'FAN21G2515' => 'fan', 'FAN24G1358' => 'fan', 'FAN25G0685' => 'fan', 'FAN26G2169' => 'fan', 'FAN27G2381' => 'fan', 'FAN28G0247' => 'fan', 'FvH4_1g29420' => 'fve', 'FvH4_2g10091' => 'fve', 'FvH4_2g10092' => 'fve', 'FvH4_3g38180' => 'fve', 'Glyma.02G225200' => 'gma', 'Glyma.03G004800' => 'gma', 'Glyma.14G192000' => 'gma', 'Glyma.18G065500' => 'gma', 'Glyma.19G121300' => 'gma', 'Gohir.A03G049200' => 'ghi', 'Gohir.A05G090000' => 'ghi', 'Gohir.A08G002050' => 'ghi', 'Gohir.A11G224214' => 'ghi', 'Gohir.A13G097000' => 'ghi', 'Gohir.A13G160000' => 'ghi', 'Gohir.D03G118000' => 'ghi', 'Gohir.D05G090900' => 'ghi', 'Gohir.D08G012750' => 'ghi', 'Gohir.D11G237400' => 'ghi', 'Gohir.D13G102100' => 'ghi', 'Gohir.D13G165200' => 'ghi', 'Gorai.003G124500' => 'gra', 'Gorai.004G006800' => 'gra', 'Gorai.007G250800' => 'gra', 'Gorai.009G093400' => 'gra', 'Gorai.013G114300' => 'gra', 'Gorai.013G197500' => 'gra', 'GSVIVG01029896001' => 'vvi', 'HanXRQChr00c0297g0573161' => 'han', 'HanXRQChr10g0293151' => 'han', 'HanXRQChr10g0300581' => 'han', 'HanXRQChr11g0337951' => 'han', 'Haze_20366' => 'cav', 'Haze_24256' => 'cav', 'Hma1.2p1_0165F.1_g073333' => 'hma', 'Hma1.2p1_1010F.1_g247400' => 'hma', 'Hma1.2p1_1291F.1_g273630' => 'hma', 'HPP92_005921' => 'vpl', 'HPP92_005925' => 'vpl', 'HPP92_008478' => 'vpl', 'Hund15172' => 'sun', 'Hund18858' => 'sun', 'Lalb_Chr04g0252341' => 'lal', 'Lalb_Chr04g0252351' => 'lal', 'Lalb_Chr04g0252361' => 'lal', 'Lalb_Chr10g0103251' => 'lal', 'Lalb_Chr10g0103261' => 'lal', 'Lalb_Chr14g0365081' => 'lal', 'Lalb_Chr15g0082731' => 'lal', 'Lalb_Chr15g0082741' => 'lal', 'Lalb_Chr17g0344981' => 'lal', 'Lalb_Chr18g0050791' => 'lal', 'Lj1A141G50' => 'lonja', 'Lj1g0005282' => 'lja', 'Lj1P1075T62' => 'lonja', 'Lj2P1077T57' => 'lonja', 'Lj6g0005224' => 'lja', 'LjContig00155g0014668' => 'lja', 'Lsat_1_v5_gn_8_85341' => 'lsa', 'Lsat_1_v5_gn_9_112680' => 'lsa', 'Lsat_1_v5_gn_9_26961' => 'lsa', 'Lsat_1_v5_gn_9_30121' => 'lsa', 'Manes.01G164500' => 'mes', 'Manes.02G121900' => 'mes', 'Manes.08G155700' => 'mes', 'Manes.09G134400' => 'mes', 'MBI13_g15011_MAGBIO' => 'mbi', 'MBI19_g06602_MAGBIO' => 'mbi', 'MD03G1075800' => 'mdo', 'MD05G1057800' => 'mdo', 'MD10G1065700' => 'mdo', 'MD11G1080500' => 'mdo', 'MD12G1015000' => 'mdo', 'MD14G1012900' => 'mdo', 'Medtr3g462910' => 'mtr', 'Medtr5g069750' => 'mtr', 'Medtr7g087490' => 'mtr', 'MELO3C008875.2' => 'cme', 'MELO3C020564.2' => 'cme', 'Migut.J01577' => 'egut', 'Migut.N00881' => 'egut', 'Migut.N01846' => 'egut', 'MSTRG.10764' => 'ama', 'MSTRG.19759' => 'ama', 'MSTRG.6275' => 'ama', 'Nitab4.5_0000062g0420' => 'nta', 'Nitab4.5_0000102g0160' => 'nta', 'Nitab4.5_0000123g0050' => 'nta', 'Nitab4.5_0003808g0050' => 'nta', 'Nitab4.5_0003808g0060' => 'nta', 'Nitab4.5_0005500g0020' => 'nta', 'Nitab4.5_0007999g0010' => 'nta', 'Nn2g11384' => 'nnu', 'Nn7g38016' => 'nnu', 'Oeu023030.1' => 'oeu', 'Oeu044220.1' => 'oeu', 'Oeu049274.1' => 'oeu', 'Oeu060743.1' => 'oeu', 'Oeu060745.1' => 'oeu', 'Os01g0812050' => 'osa', 'Os03g0862000' => 'osa', 'Os05g0490400' => 'osa', 'Os07g0472300' => 'osa', 'Os11g0130800' => 'osa', 'Os12g0127650' => 'osa', 'Peaxi162Scf00003g05364' => 'pax', 'Peaxi162Scf00153g01023' => 'pax', 'Peaxi162Scf00216g00115' => 'pax', 'PGR042G3731' => 'pgr', 'PGR119G2260' => 'pgr', 'PGSC0003DMG400004163' => 'stu', 'PGSC0003DMG400019177' => 'stu', 'PGSC0003DMG400028204' => 'stu', 'Phvul.001G101800' => 'pvu', 'Phvul.006G065500' => 'pvu', 'Phvul.008G262800' => 'pvu', 'Potri.001G249000' => 'ptr', 'Potri.009G043000' => 'ptr', 'Potri.013G068800' => 'ptr', 'Potri.019G044500' => 'ptr', 'Prupe.6G060900' => 'ppe', 'Prupe.7G025700' => 'ppe', 'Prupe.8G087600' => 'ppe', 'Psat2g059400' => 'psa', 'Psat3g084320' => 'psa', 'Psat5g160800' => 'psa', 'PSO210G3936' => 'pso', 'PSO210G7347' => 'pso', 'PSO339G0059' => 'pso', 'PSO339G2450' => 'pso', 'PSO384G2823' => 'pso', 'PSO532G0028' => 'pso', 'PSO541G2770' => 'pso', 'PSO801G0543' => 'pso', 'QL01p026846' => 'qlo', 'QL07p015943' => 'qlo', 'RcHm_v2.0_Chr3g0495491' => 'rch', 'RcHm_v2.0_Chr5g0068611' => 'rch', 'RcHm_v2.0_Chr6g0267051' => 'rch', 'Rhsim13G0072200' => 'rsi', 'RhsimUnG0023200' => 'rsi', 'Sabra16G0151100' => 'sbr', 'Sabra19G0054900' => 'sbr', 'SalBow1G2425' => 'sbo', 'SalBow1G6156' => 'sbo', 'SalBow6G5301' => 'sbo', 'SalBow6G5969' => 'sbo', 'Sc01g0007860' => 'sci', 'Sc06g0008410' => 'sci', 'Sc12g0000860' => 'sci', 'Sc22g0002340' => 'sci', 'Sed0005780' => 'sed', 'Sed0008864' => 'sed', 'Sed0026327' => 'sed', 'SEGI_17680' => 'sgi', 'SGA_v2.0_scaffold120G32945' => 'sas', 'SGA_v2.0_scaffold240G44144' => 'sas', 'SGA_v2.0_scaffold66G22332' => 'sas', 'Solyc06g005960.4' => 'sly', 'Solyc10g076650.3' => 'sly', 'Solyc10g076995.1' => 'sly', 'Solyc10g077000.3' => 'sly', 'Solyc10g081200.1' => 'sly', 'Sopen06g001930' => 'spe', 'Sopen10g028260' => 'spe', 'Sopen10g028680' => 'spe', 'Sopen10g031700' => 'spe', 'Sp4g12330' => 'spa', 'Sp6g26360' => 'spa', 'TAR369G0234' => 'tar', 'TAR369G1119' => 'tar', 'TAR623G1062' => 'tar', 'THA.LOC104800720' => 'tha', 'THA.LOC104802888' => 'tha', 'THA.LOC104820809' => 'tha', 'THA.LOC104826297' => 'tha', 'Thecc.05G236600' => 'tca', 'Thecc.09G305600' => 'tca', 'Thhalv10009482m.g' => 'esa', 'Thhalv10012439m.g' => 'esa', 'Thhalv10017594m.g' => 'esa', 'TPR.G13293' => 'tpr', 'TPR.G23643' => 'tpr', 'TPR.G24037' => 'tpr', 'TWI31G1266' => 'twi', 'TWI32G1337' => 'twi', 'TWI34G0003' => 'twi', 'TWI75G0348' => 'twi', 'TWI79G1268' => 'twi', 'unitig_21.g20665' => 'ugi', 'unitig_22.g5220' => 'ugi', 'unitig_8.g3691' => 'ugi', 'unitig_8.g3692' => 'ugi', 'unitig_8.g3693' => 'ugi', 'vmacro07618' => 'vma', 'VMungo0540G2490' => 'vmu', 'VMungo0647G2111' => 'vmu', 'VMungo1383G0089' => 'vmu', 'VMungo1383G0221' => 'vmu', 'Zm00001eb065350' => 'zma', 'Zm00001eb093510' => 'zma', 'Zm00001eb104840' => 'zma', 'Zm00001eb150100' => 'zma', 'Zm00001eb150130' => 'zma', 'Zm00001eb291270' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002005' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002005' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002005' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002005' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002005', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '330', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p08550' => 'bna', 'A05p15780' => 'bna', 'A08p35710' => 'bna', 'A10p21570' => 'bna', 'Aa31LG11G11930' => 'aar', 'Aa31LG5G6870' => 'aar', 'Actinidia16071' => 'ach', 'Actinidia16072' => 'ach', 'Actinidia25146' => 'ach', 'Actinidia37843' => 'ach', 'Actinidia38829' => 'ach', 'Ah.13g070760' => 'amhyb', 'AL1G17480' => 'aly', 'AL1G51410' => 'aly', 'AL4G24370' => 'aly', 'Aqoxy3G00499' => 'aox', 'Aqoxy4G02664' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7WLH9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M37KEN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNMS29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU7E8L' => 'arhy', 'AT1G07330' => 'ath', 'AT2G29620' => 'ath', 'AT5G17910' => 'ath', 'ATR0307G088' => 'atr', 'Atru.chr2.1605' => 'acertr', 'Atru.chr2.1606' => 'acertr', 'Atru.chr3.4274' => 'acertr', 'AUR62001686' => 'cqu', 'AUR62007203' => 'cqu', 'AUR62018799' => 'cqu', 'AUR62020096' => 'cqu', 'AUR62037108' => 'cqu', 'AUR62042367' => 'cqu', 'BcaB01g04923' => 'bca', 'BcaB01g05164' => 'bca', 'BcaB02g10266' => 'bca', 'BcaB03g13401' => 'bca', 'BcaB05g22517' => 'bca', 'BcaB08g36725' => 'bca', 'BcaC04g18741' => 'bca', 'BolC3t13486H' => 'bol', 'BolC4t23648H' => 'bol', 'BolC8t47096H' => 'bol', 'BolC9t58754H' => 'bol', 'BraA03t10181Z' => 'bra', 'BraA05t20492Z' => 'bra', 'BraA08t35478Z' => 'bra', 'BraA10t44218Z' => 'bra', 'C03p09980' => 'bna', 'C04p21220' => 'bna', 'C08p02960' => 'bna', 'C09p59060' => 'bna', 'C09p59080' => 'bna', 'CAN.G128.110' => 'can', 'CAN.G483.2' => 'can', 'CAN.G85.12' => 'can', 'CANSAT54G0486' => 'cansat', 'CANSAT78G2106' => 'cansat', 'CARHR122940' => 'chi', 'CARHR195210' => 'chi', 'Carub.0001s0663' => 'cru', 'Carub.0004s1071' => 'cru', 'Carub.0006s1612' => 'cru', 'Ca_03430_v3' => 'car', 'Ca_05585_v3' => 'car', 'Ca_14909_v3' => 'car', 'Cc00_g08730' => 'ccan', 'Cc01_g13930' => 'ccan', 'CDE08G0232' => 'cde', 'CDE09G0963' => 'cde', 'CDE09G1138' => 'cde', 'Cfa011652' => 'cfa', 'Cfa019886' => 'cfa', 'Ciclev10029861m.g' => 'ccl', 'Ciclev10030490m.g' => 'ccl', 'CiPaw.09G053000' => 'cil', 'CiPaw.10G044600' => 'cil', 'CiPaw.11G022800' => 'cil', 'CiPaw.13G080900' => 'cil', 'ClCG03G000910' => 'cla', 'ClCG04G004830' => 'cla', 'ClCG09G013260' => 'cla', 'COL.COLO4_19108' => 'col', 'COL.COLO4_33471' => 'col', 'Cpa.g.sc112.55' => 'cpa', 'Cpa.g.sc117.54' => 'cpa', 'Cpa.g.sc73.39' => 'cpa', 'CsaV3_1G036030' => 'csa', 'CsaV3_4G031680' => 'csa', 'CSS0001466' => 'camsi', 'CSS0028379' => 'camsi', 'CSS0037844' => 'camsi', 'CSS0044657' => 'camsi', 'DCAR_005896' => 'dca', 'DCAR_013506' => 'dca', 'DCAR_020635' => 'dca', 'Dinv14553' => 'din', 'Dinv14554' => 'din', 'Dinv28616' => 'din', 'Dinv28617' => 'din', 'Dinv37045' => 'din', 'Duzib106G2027' => 'dzi', 'Duzib128G1239' => 'dzi', 'Duzib128G1312' => 'dzi', 'Duzib128G1593' => 'dzi', 'Duzib168G1408' => 'dzi', 'Duzib177G0589' => 'dzi', 'ECA236G4805' => 'eca', 'ECA247G0136' => 'eca', 'ECA247G0685' => 'eca', 'ECA248G0533' => 'eca', 'EL10Ac9g21403' => 'bvu', 'Eucgr.A02165' => 'egr', 'FAN11G0187' => 'fan', 'FAN15G1233' => 'fan', 'FAN16G2282' => 'fan', 'FAN19G0929' => 'fan', 'FAN20G0782' => 'fan', 'FAN21G2515' => 'fan', 'FAN24G1358' => 'fan', 'FAN25G0685' => 'fan', 'FAN26G2169' => 'fan', 'FAN27G2381' => 'fan', 'FAN28G0247' => 'fan', 'FvH4_1g29420' => 'fve', 'FvH4_2g10091' => 'fve', 'FvH4_2g10092' => 'fve', 'FvH4_3g38180' => 'fve', 'Glyma.02G225200' => 'gma', 'Glyma.03G004800' => 'gma', 'Glyma.14G192000' => 'gma', 'Glyma.18G065500' => 'gma', 'Glyma.19G121300' => 'gma', 'Gohir.A03G049200' => 'ghi', 'Gohir.A05G090000' => 'ghi', 'Gohir.A08G002050' => 'ghi', 'Gohir.A11G224214' => 'ghi', 'Gohir.A13G097000' => 'ghi', 'Gohir.A13G160000' => 'ghi', 'Gohir.D03G118000' => 'ghi', 'Gohir.D05G090900' => 'ghi', 'Gohir.D08G012750' => 'ghi', 'Gohir.D11G237400' => 'ghi', 'Gohir.D13G102100' => 'ghi', 'Gohir.D13G165200' => 'ghi', 'Gorai.003G124500' => 'gra', 'Gorai.004G006800' => 'gra', 'Gorai.007G250800' => 'gra', 'Gorai.009G093400' => 'gra', 'Gorai.013G114300' => 'gra', 'Gorai.013G197500' => 'gra', 'GSVIVG01029896001' => 'vvi', 'HanXRQChr00c0297g0573161' => 'han', 'HanXRQChr10g0293151' => 'han', 'HanXRQChr10g0300581' => 'han', 'HanXRQChr11g0337951' => 'han', 'Haze_20366' => 'cav', 'Haze_24256' => 'cav', 'Hma1.2p1_0165F.1_g073333' => 'hma', 'Hma1.2p1_1010F.1_g247400' => 'hma', 'Hma1.2p1_1291F.1_g273630' => 'hma', 'HPP92_005921' => 'vpl', 'HPP92_005925' => 'vpl', 'HPP92_008478' => 'vpl', 'Hund15172' => 'sun', 'Hund18858' => 'sun', 'Lalb_Chr04g0252341' => 'lal', 'Lalb_Chr04g0252351' => 'lal', 'Lalb_Chr04g0252361' => 'lal', 'Lalb_Chr10g0103251' => 'lal', 'Lalb_Chr10g0103261' => 'lal', 'Lalb_Chr14g0365081' => 'lal', 'Lalb_Chr15g0082731' => 'lal', 'Lalb_Chr15g0082741' => 'lal', 'Lalb_Chr17g0344981' => 'lal', 'Lalb_Chr18g0050791' => 'lal', 'Lj1A141G50' => 'lonja', 'Lj1g0005282' => 'lja', 'Lj1P1075T62' => 'lonja', 'Lj2P1077T57' => 'lonja', 'Lj6g0005224' => 'lja', 'LjContig00155g0014668' => 'lja', 'Lsat_1_v5_gn_8_85341' => 'lsa', 'Lsat_1_v5_gn_9_112680' => 'lsa', 'Lsat_1_v5_gn_9_26961' => 'lsa', 'Lsat_1_v5_gn_9_30121' => 'lsa', 'Manes.01G164500' => 'mes', 'Manes.02G121900' => 'mes', 'Manes.08G155700' => 'mes', 'Manes.09G134400' => 'mes', 'MBI13_g15011_MAGBIO' => 'mbi', 'MBI19_g06602_MAGBIO' => 'mbi', 'MD03G1075800' => 'mdo', 'MD05G1057800' => 'mdo', 'MD10G1065700' => 'mdo', 'MD11G1080500' => 'mdo', 'MD12G1015000' => 'mdo', 'MD14G1012900' => 'mdo', 'Medtr3g462910' => 'mtr', 'Medtr5g069750' => 'mtr', 'Medtr7g087490' => 'mtr', 'MELO3C008875.2' => 'cme', 'MELO3C020564.2' => 'cme', 'Migut.J01577' => 'egut', 'Migut.N00881' => 'egut', 'Migut.N01846' => 'egut', 'MSTRG.10764' => 'ama', 'MSTRG.19759' => 'ama', 'MSTRG.6275' => 'ama', 'Nitab4.5_0000062g0420' => 'nta', 'Nitab4.5_0000102g0160' => 'nta', 'Nitab4.5_0000123g0050' => 'nta', 'Nitab4.5_0003808g0050' => 'nta', 'Nitab4.5_0003808g0060' => 'nta', 'Nitab4.5_0005500g0020' => 'nta', 'Nitab4.5_0007999g0010' => 'nta', 'Nn2g11384' => 'nnu', 'Nn7g38016' => 'nnu', 'Oeu023030.1' => 'oeu', 'Oeu044220.1' => 'oeu', 'Oeu049274.1' => 'oeu', 'Oeu060743.1' => 'oeu', 'Oeu060745.1' => 'oeu', 'Os01g0812050' => 'osa', 'Os03g0862000' => 'osa', 'Os05g0490400' => 'osa', 'Os07g0472300' => 'osa', 'Os11g0130800' => 'osa', 'Os12g0127650' => 'osa', 'Peaxi162Scf00003g05364' => 'pax', 'Peaxi162Scf00153g01023' => 'pax', 'Peaxi162Scf00216g00115' => 'pax', 'PGR042G3731' => 'pgr', 'PGR119G2260' => 'pgr', 'PGSC0003DMG400004163' => 'stu', 'PGSC0003DMG400019177' => 'stu', 'PGSC0003DMG400028204' => 'stu', 'Phvul.001G101800' => 'pvu', 'Phvul.006G065500' => 'pvu', 'Phvul.008G262800' => 'pvu', 'Potri.001G249000' => 'ptr', 'Potri.009G043000' => 'ptr', 'Potri.013G068800' => 'ptr', 'Potri.019G044500' => 'ptr', 'Prupe.6G060900' => 'ppe', 'Prupe.7G025700' => 'ppe', 'Prupe.8G087600' => 'ppe', 'Psat2g059400' => 'psa', 'Psat3g084320' => 'psa', 'Psat5g160800' => 'psa', 'PSO210G3936' => 'pso', 'PSO210G7347' => 'pso', 'PSO339G0059' => 'pso', 'PSO339G2450' => 'pso', 'PSO384G2823' => 'pso', 'PSO532G0028' => 'pso', 'PSO541G2770' => 'pso', 'PSO801G0543' => 'pso', 'QL01p026846' => 'qlo', 'QL07p015943' => 'qlo', 'RcHm_v2.0_Chr3g0495491' => 'rch', 'RcHm_v2.0_Chr5g0068611' => 'rch', 'RcHm_v2.0_Chr6g0267051' => 'rch', 'Rhsim13G0072200' => 'rsi', 'RhsimUnG0023200' => 'rsi', 'Sabra16G0151100' => 'sbr', 'Sabra19G0054900' => 'sbr', 'SalBow1G2425' => 'sbo', 'SalBow1G6156' => 'sbo', 'SalBow6G5301' => 'sbo', 'SalBow6G5969' => 'sbo', 'Sc01g0007860' => 'sci', 'Sc06g0008410' => 'sci', 'Sc12g0000860' => 'sci', 'Sc22g0002340' => 'sci', 'Sed0005780' => 'sed', 'Sed0008864' => 'sed', 'Sed0026327' => 'sed', 'SEGI_17680' => 'sgi', 'SGA_v2.0_scaffold120G32945' => 'sas', 'SGA_v2.0_scaffold240G44144' => 'sas', 'SGA_v2.0_scaffold66G22332' => 'sas', 'Solyc06g005960.4' => 'sly', 'Solyc10g076650.3' => 'sly', 'Solyc10g076995.1' => 'sly', 'Solyc10g077000.3' => 'sly', 'Solyc10g081200.1' => 'sly', 'Sopen06g001930' => 'spe', 'Sopen10g028260' => 'spe', 'Sopen10g028680' => 'spe', 'Sopen10g031700' => 'spe', 'Sp4g12330' => 'spa', 'Sp6g26360' => 'spa', 'TAR369G0234' => 'tar', 'TAR369G1119' => 'tar', 'TAR623G1062' => 'tar', 'THA.LOC104800720' => 'tha', 'THA.LOC104802888' => 'tha', 'THA.LOC104820809' => 'tha', 'THA.LOC104826297' => 'tha', 'Thecc.05G236600' => 'tca', 'Thecc.09G305600' => 'tca', 'Thhalv10009482m.g' => 'esa', 'Thhalv10012439m.g' => 'esa', 'Thhalv10017594m.g' => 'esa', 'TPR.G13293' => 'tpr', 'TPR.G23643' => 'tpr', 'TPR.G24037' => 'tpr', 'TWI31G1266' => 'twi', 'TWI32G1337' => 'twi', 'TWI34G0003' => 'twi', 'TWI75G0348' => 'twi', 'TWI79G1268' => 'twi', 'unitig_21.g20665' => 'ugi', 'unitig_22.g5220' => 'ugi', 'unitig_8.g3691' => 'ugi', 'unitig_8.g3692' => 'ugi', 'unitig_8.g3693' => 'ugi', 'vmacro07618' => 'vma', 'VMungo0540G2490' => 'vmu', 'VMungo0647G2111' => 'vmu', 'VMungo1383G0089' => 'vmu', 'VMungo1383G0221' => 'vmu', 'Zm00001eb065350' => 'zma', 'Zm00001eb093510' => 'zma', 'Zm00001eb104840' => 'zma', 'Zm00001eb150100' => 'zma', 'Zm00001eb150130' => 'zma', 'Zm00001eb291270' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002005', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002005' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002005', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '330', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002005' ) ), 'genes' => array( 'A03p08550' => 'bna', 'A05p15780' => 'bna', 'A08p35710' => 'bna', 'A10p21570' => 'bna', 'Aa31LG11G11930' => 'aar', 'Aa31LG5G6870' => 'aar', 'Actinidia16071' => 'ach', 'Actinidia16072' => 'ach', 'Actinidia25146' => 'ach', 'Actinidia37843' => 'ach', 'Actinidia38829' => 'ach', 'Ah.13g070760' => 'amhyb', 'AL1G17480' => 'aly', 'AL1G51410' => 'aly', 'AL4G24370' => 'aly', 'Aqoxy3G00499' => 'aox', 'Aqoxy4G02664' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7WLH9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M37KEN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNMS29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU7E8L' => 'arhy', 'AT1G07330' => 'ath', 'AT2G29620' => 'ath', 'AT5G17910' => 'ath', 'ATR0307G088' => 'atr', 'Atru.chr2.1605' => 'acertr', 'Atru.chr2.1606' => 'acertr', 'Atru.chr3.4274' => 'acertr', 'AUR62001686' => 'cqu', 'AUR62007203' => 'cqu', 'AUR62018799' => 'cqu', 'AUR62020096' => 'cqu', 'AUR62037108' => 'cqu', 'AUR62042367' => 'cqu', 'BcaB01g04923' => 'bca', 'BcaB01g05164' => 'bca', 'BcaB02g10266' => 'bca', 'BcaB03g13401' => 'bca', 'BcaB05g22517' => 'bca', 'BcaB08g36725' => 'bca', 'BcaC04g18741' => 'bca', 'BolC3t13486H' => 'bol', 'BolC4t23648H' => 'bol', 'BolC8t47096H' => 'bol', 'BolC9t58754H' => 'bol', 'BraA03t10181Z' => 'bra', 'BraA05t20492Z' => 'bra', 'BraA08t35478Z' => 'bra', 'BraA10t44218Z' => 'bra', 'C03p09980' => 'bna', 'C04p21220' => 'bna', 'C08p02960' => 'bna', 'C09p59060' => 'bna', 'C09p59080' => 'bna', 'CAN.G128.110' => 'can', 'CAN.G483.2' => 'can', 'CAN.G85.12' => 'can', 'CANSAT54G0486' => 'cansat', 'CANSAT78G2106' => 'cansat', 'CARHR122940' => 'chi', 'CARHR195210' => 'chi', 'Carub.0001s0663' => 'cru', 'Carub.0004s1071' => 'cru', 'Carub.0006s1612' => 'cru', 'Ca_03430_v3' => 'car', 'Ca_05585_v3' => 'car', 'Ca_14909_v3' => 'car', 'Cc00_g08730' => 'ccan', 'Cc01_g13930' => 'ccan', 'CDE08G0232' => 'cde', 'CDE09G0963' => 'cde', 'CDE09G1138' => 'cde', 'Cfa011652' => 'cfa', 'Cfa019886' => 'cfa', 'Ciclev10029861m.g' => 'ccl', 'Ciclev10030490m.g' => 'ccl', 'CiPaw.09G053000' => 'cil', 'CiPaw.10G044600' => 'cil', 'CiPaw.11G022800' => 'cil', 'CiPaw.13G080900' => 'cil', 'ClCG03G000910' => 'cla', 'ClCG04G004830' => 'cla', 'ClCG09G013260' => 'cla', 'COL.COLO4_19108' => 'col', 'COL.COLO4_33471' => 'col', 'Cpa.g.sc112.55' => 'cpa', 'Cpa.g.sc117.54' => 'cpa', 'Cpa.g.sc73.39' => 'cpa', 'CsaV3_1G036030' => 'csa', 'CsaV3_4G031680' => 'csa', 'CSS0001466' => 'camsi', 'CSS0028379' => 'camsi', 'CSS0037844' => 'camsi', 'CSS0044657' => 'camsi', 'DCAR_005896' => 'dca', 'DCAR_013506' => 'dca', 'DCAR_020635' => 'dca', 'Dinv14553' => 'din', 'Dinv14554' => 'din', 'Dinv28616' => 'din', 'Dinv28617' => 'din', 'Dinv37045' => 'din', 'Duzib106G2027' => 'dzi', 'Duzib128G1239' => 'dzi', 'Duzib128G1312' => 'dzi', 'Duzib128G1593' => 'dzi', 'Duzib168G1408' => 'dzi', 'Duzib177G0589' => 'dzi', 'ECA236G4805' => 'eca', 'ECA247G0136' => 'eca', 'ECA247G0685' => 'eca', 'ECA248G0533' => 'eca', 'EL10Ac9g21403' => 'bvu', 'Eucgr.A02165' => 'egr', 'FAN11G0187' => 'fan', 'FAN15G1233' => 'fan', 'FAN16G2282' => 'fan', 'FAN19G0929' => 'fan', 'FAN20G0782' => 'fan', 'FAN21G2515' => 'fan', 'FAN24G1358' => 'fan', 'FAN25G0685' => 'fan', 'FAN26G2169' => 'fan', 'FAN27G2381' => 'fan', 'FAN28G0247' => 'fan', 'FvH4_1g29420' => 'fve', 'FvH4_2g10091' => 'fve', 'FvH4_2g10092' => 'fve', 'FvH4_3g38180' => 'fve', 'Glyma.02G225200' => 'gma', 'Glyma.03G004800' => 'gma', 'Glyma.14G192000' => 'gma', 'Glyma.18G065500' => 'gma', 'Glyma.19G121300' => 'gma', 'Gohir.A03G049200' => 'ghi', 'Gohir.A05G090000' => 'ghi', 'Gohir.A08G002050' => 'ghi', 'Gohir.A11G224214' => 'ghi', 'Gohir.A13G097000' => 'ghi', 'Gohir.A13G160000' => 'ghi', 'Gohir.D03G118000' => 'ghi', 'Gohir.D05G090900' => 'ghi', 'Gohir.D08G012750' => 'ghi', 'Gohir.D11G237400' => 'ghi', 'Gohir.D13G102100' => 'ghi', 'Gohir.D13G165200' => 'ghi', 'Gorai.003G124500' => 'gra', 'Gorai.004G006800' => 'gra', 'Gorai.007G250800' => 'gra', 'Gorai.009G093400' => 'gra', 'Gorai.013G114300' => 'gra', 'Gorai.013G197500' => 'gra', 'GSVIVG01029896001' => 'vvi', 'HanXRQChr00c0297g0573161' => 'han', 'HanXRQChr10g0293151' => 'han', 'HanXRQChr10g0300581' => 'han', 'HanXRQChr11g0337951' => 'han', 'Haze_20366' => 'cav', 'Haze_24256' => 'cav', 'Hma1.2p1_0165F.1_g073333' => 'hma', 'Hma1.2p1_1010F.1_g247400' => 'hma', 'Hma1.2p1_1291F.1_g273630' => 'hma', 'HPP92_005921' => 'vpl', 'HPP92_005925' => 'vpl', 'HPP92_008478' => 'vpl', 'Hund15172' => 'sun', 'Hund18858' => 'sun', 'Lalb_Chr04g0252341' => 'lal', 'Lalb_Chr04g0252351' => 'lal', 'Lalb_Chr04g0252361' => 'lal', 'Lalb_Chr10g0103251' => 'lal', 'Lalb_Chr10g0103261' => 'lal', 'Lalb_Chr14g0365081' => 'lal', 'Lalb_Chr15g0082731' => 'lal', 'Lalb_Chr15g0082741' => 'lal', 'Lalb_Chr17g0344981' => 'lal', 'Lalb_Chr18g0050791' => 'lal', 'Lj1A141G50' => 'lonja', 'Lj1g0005282' => 'lja', 'Lj1P1075T62' => 'lonja', 'Lj2P1077T57' => 'lonja', 'Lj6g0005224' => 'lja', 'LjContig00155g0014668' => 'lja', 'Lsat_1_v5_gn_8_85341' => 'lsa', 'Lsat_1_v5_gn_9_112680' => 'lsa', 'Lsat_1_v5_gn_9_26961' => 'lsa', 'Lsat_1_v5_gn_9_30121' => 'lsa', 'Manes.01G164500' => 'mes', 'Manes.02G121900' => 'mes', 'Manes.08G155700' => 'mes', 'Manes.09G134400' => 'mes', 'MBI13_g15011_MAGBIO' => 'mbi', 'MBI19_g06602_MAGBIO' => 'mbi', 'MD03G1075800' => 'mdo', 'MD05G1057800' => 'mdo', 'MD10G1065700' => 'mdo', 'MD11G1080500' => 'mdo', 'MD12G1015000' => 'mdo', 'MD14G1012900' => 'mdo', 'Medtr3g462910' => 'mtr', 'Medtr5g069750' => 'mtr', 'Medtr7g087490' => 'mtr', 'MELO3C008875.2' => 'cme', 'MELO3C020564.2' => 'cme', 'Migut.J01577' => 'egut', 'Migut.N00881' => 'egut', 'Migut.N01846' => 'egut', 'MSTRG.10764' => 'ama', 'MSTRG.19759' => 'ama', 'MSTRG.6275' => 'ama', 'Nitab4.5_0000062g0420' => 'nta', 'Nitab4.5_0000102g0160' => 'nta', 'Nitab4.5_0000123g0050' => 'nta', 'Nitab4.5_0003808g0050' => 'nta', 'Nitab4.5_0003808g0060' => 'nta', 'Nitab4.5_0005500g0020' => 'nta', 'Nitab4.5_0007999g0010' => 'nta', 'Nn2g11384' => 'nnu', 'Nn7g38016' => 'nnu', 'Oeu023030.1' => 'oeu', 'Oeu044220.1' => 'oeu', 'Oeu049274.1' => 'oeu', 'Oeu060743.1' => 'oeu', 'Oeu060745.1' => 'oeu', 'Os01g0812050' => 'osa', 'Os03g0862000' => 'osa', 'Os05g0490400' => 'osa', 'Os07g0472300' => 'osa', 'Os11g0130800' => 'osa', 'Os12g0127650' => 'osa', 'Peaxi162Scf00003g05364' => 'pax', 'Peaxi162Scf00153g01023' => 'pax', 'Peaxi162Scf00216g00115' => 'pax', 'PGR042G3731' => 'pgr', 'PGR119G2260' => 'pgr', 'PGSC0003DMG400004163' => 'stu', 'PGSC0003DMG400019177' => 'stu', 'PGSC0003DMG400028204' => 'stu', 'Phvul.001G101800' => 'pvu', 'Phvul.006G065500' => 'pvu', 'Phvul.008G262800' => 'pvu', 'Potri.001G249000' => 'ptr', 'Potri.009G043000' => 'ptr', 'Potri.013G068800' => 'ptr', 'Potri.019G044500' => 'ptr', 'Prupe.6G060900' => 'ppe', 'Prupe.7G025700' => 'ppe', 'Prupe.8G087600' => 'ppe', 'Psat2g059400' => 'psa', 'Psat3g084320' => 'psa', 'Psat5g160800' => 'psa', 'PSO210G3936' => 'pso', 'PSO210G7347' => 'pso', 'PSO339G0059' => 'pso', 'PSO339G2450' => 'pso', 'PSO384G2823' => 'pso', 'PSO532G0028' => 'pso', 'PSO541G2770' => 'pso', 'PSO801G0543' => 'pso', 'QL01p026846' => 'qlo', 'QL07p015943' => 'qlo', 'RcHm_v2.0_Chr3g0495491' => 'rch', 'RcHm_v2.0_Chr5g0068611' => 'rch', 'RcHm_v2.0_Chr6g0267051' => 'rch', 'Rhsim13G0072200' => 'rsi', 'RhsimUnG0023200' => 'rsi', 'Sabra16G0151100' => 'sbr', 'Sabra19G0054900' => 'sbr', 'SalBow1G2425' => 'sbo', 'SalBow1G6156' => 'sbo', 'SalBow6G5301' => 'sbo', 'SalBow6G5969' => 'sbo', 'Sc01g0007860' => 'sci', 'Sc06g0008410' => 'sci', 'Sc12g0000860' => 'sci', 'Sc22g0002340' => 'sci', 'Sed0005780' => 'sed', 'Sed0008864' => 'sed', 'Sed0026327' => 'sed', 'SEGI_17680' => 'sgi', 'SGA_v2.0_scaffold120G32945' => 'sas', 'SGA_v2.0_scaffold240G44144' => 'sas', 'SGA_v2.0_scaffold66G22332' => 'sas', 'Solyc06g005960.4' => 'sly', 'Solyc10g076650.3' => 'sly', 'Solyc10g076995.1' => 'sly', 'Solyc10g077000.3' => 'sly', 'Solyc10g081200.1' => 'sly', 'Sopen06g001930' => 'spe', 'Sopen10g028260' => 'spe', 'Sopen10g028680' => 'spe', 'Sopen10g031700' => 'spe', 'Sp4g12330' => 'spa', 'Sp6g26360' => 'spa', 'TAR369G0234' => 'tar', 'TAR369G1119' => 'tar', 'TAR623G1062' => 'tar', 'THA.LOC104800720' => 'tha', 'THA.LOC104802888' => 'tha', 'THA.LOC104820809' => 'tha', 'THA.LOC104826297' => 'tha', 'Thecc.05G236600' => 'tca', 'Thecc.09G305600' => 'tca', 'Thhalv10009482m.g' => 'esa', 'Thhalv10012439m.g' => 'esa', 'Thhalv10017594m.g' => 'esa', 'TPR.G13293' => 'tpr', 'TPR.G23643' => 'tpr', 'TPR.G24037' => 'tpr', 'TWI31G1266' => 'twi', 'TWI32G1337' => 'twi', 'TWI34G0003' => 'twi', 'TWI75G0348' => 'twi', 'TWI79G1268' => 'twi', 'unitig_21.g20665' => 'ugi', 'unitig_22.g5220' => 'ugi', 'unitig_8.g3691' => 'ugi', 'unitig_8.g3692' => 'ugi', 'unitig_8.g3693' => 'ugi', 'vmacro07618' => 'vma', 'VMungo0540G2490' => 'vmu', 'VMungo0647G2111' => 'vmu', 'VMungo1383G0089' => 'vmu', 'VMungo1383G0221' => 'vmu', 'Zm00001eb065350' => 'zma', 'Zm00001eb093510' => 'zma', 'Zm00001eb104840' => 'zma', 'Zm00001eb150100' => 'zma', 'Zm00001eb150130' => 'zma', 'Zm00001eb291270' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002005' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002005' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002005' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002005' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002005', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '330', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p08550' => 'bna', 'A05p15780' => 'bna', 'A08p35710' => 'bna', 'A10p21570' => 'bna', 'Aa31LG11G11930' => 'aar', 'Aa31LG5G6870' => 'aar', 'Actinidia16071' => 'ach', 'Actinidia16072' => 'ach', 'Actinidia25146' => 'ach', 'Actinidia37843' => 'ach', 'Actinidia38829' => 'ach', 'Ah.13g070760' => 'amhyb', 'AL1G17480' => 'aly', 'AL1G51410' => 'aly', 'AL4G24370' => 'aly', 'Aqoxy3G00499' => 'aox', 'Aqoxy4G02664' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7WLH9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M37KEN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNMS29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU7E8L' => 'arhy', 'AT1G07330' => 'ath', 'AT2G29620' => 'ath', 'AT5G17910' => 'ath', 'ATR0307G088' => 'atr', 'Atru.chr2.1605' => 'acertr', 'Atru.chr2.1606' => 'acertr', 'Atru.chr3.4274' => 'acertr', 'AUR62001686' => 'cqu', 'AUR62007203' => 'cqu', 'AUR62018799' => 'cqu', 'AUR62020096' => 'cqu', 'AUR62037108' => 'cqu', 'AUR62042367' => 'cqu', 'BcaB01g04923' => 'bca', 'BcaB01g05164' => 'bca', 'BcaB02g10266' => 'bca', 'BcaB03g13401' => 'bca', 'BcaB05g22517' => 'bca', 'BcaB08g36725' => 'bca', 'BcaC04g18741' => 'bca', 'BolC3t13486H' => 'bol', 'BolC4t23648H' => 'bol', 'BolC8t47096H' => 'bol', 'BolC9t58754H' => 'bol', 'BraA03t10181Z' => 'bra', 'BraA05t20492Z' => 'bra', 'BraA08t35478Z' => 'bra', 'BraA10t44218Z' => 'bra', 'C03p09980' => 'bna', 'C04p21220' => 'bna', 'C08p02960' => 'bna', 'C09p59060' => 'bna', 'C09p59080' => 'bna', 'CAN.G128.110' => 'can', 'CAN.G483.2' => 'can', 'CAN.G85.12' => 'can', 'CANSAT54G0486' => 'cansat', 'CANSAT78G2106' => 'cansat', 'CARHR122940' => 'chi', 'CARHR195210' => 'chi', 'Carub.0001s0663' => 'cru', 'Carub.0004s1071' => 'cru', 'Carub.0006s1612' => 'cru', 'Ca_03430_v3' => 'car', 'Ca_05585_v3' => 'car', 'Ca_14909_v3' => 'car', 'Cc00_g08730' => 'ccan', 'Cc01_g13930' => 'ccan', 'CDE08G0232' => 'cde', 'CDE09G0963' => 'cde', 'CDE09G1138' => 'cde', 'Cfa011652' => 'cfa', 'Cfa019886' => 'cfa', 'Ciclev10029861m.g' => 'ccl', 'Ciclev10030490m.g' => 'ccl', 'CiPaw.09G053000' => 'cil', 'CiPaw.10G044600' => 'cil', 'CiPaw.11G022800' => 'cil', 'CiPaw.13G080900' => 'cil', 'ClCG03G000910' => 'cla', 'ClCG04G004830' => 'cla', 'ClCG09G013260' => 'cla', 'COL.COLO4_19108' => 'col', 'COL.COLO4_33471' => 'col', 'Cpa.g.sc112.55' => 'cpa', 'Cpa.g.sc117.54' => 'cpa', 'Cpa.g.sc73.39' => 'cpa', 'CsaV3_1G036030' => 'csa', 'CsaV3_4G031680' => 'csa', 'CSS0001466' => 'camsi', 'CSS0028379' => 'camsi', 'CSS0037844' => 'camsi', 'CSS0044657' => 'camsi', 'DCAR_005896' => 'dca', 'DCAR_013506' => 'dca', 'DCAR_020635' => 'dca', 'Dinv14553' => 'din', 'Dinv14554' => 'din', 'Dinv28616' => 'din', 'Dinv28617' => 'din', 'Dinv37045' => 'din', 'Duzib106G2027' => 'dzi', 'Duzib128G1239' => 'dzi', 'Duzib128G1312' => 'dzi', 'Duzib128G1593' => 'dzi', 'Duzib168G1408' => 'dzi', 'Duzib177G0589' => 'dzi', 'ECA236G4805' => 'eca', 'ECA247G0136' => 'eca', 'ECA247G0685' => 'eca', 'ECA248G0533' => 'eca', 'EL10Ac9g21403' => 'bvu', 'Eucgr.A02165' => 'egr', 'FAN11G0187' => 'fan', 'FAN15G1233' => 'fan', 'FAN16G2282' => 'fan', 'FAN19G0929' => 'fan', 'FAN20G0782' => 'fan', 'FAN21G2515' => 'fan', 'FAN24G1358' => 'fan', 'FAN25G0685' => 'fan', 'FAN26G2169' => 'fan', 'FAN27G2381' => 'fan', 'FAN28G0247' => 'fan', 'FvH4_1g29420' => 'fve', 'FvH4_2g10091' => 'fve', 'FvH4_2g10092' => 'fve', 'FvH4_3g38180' => 'fve', 'Glyma.02G225200' => 'gma', 'Glyma.03G004800' => 'gma', 'Glyma.14G192000' => 'gma', 'Glyma.18G065500' => 'gma', 'Glyma.19G121300' => 'gma', 'Gohir.A03G049200' => 'ghi', 'Gohir.A05G090000' => 'ghi', 'Gohir.A08G002050' => 'ghi', 'Gohir.A11G224214' => 'ghi', 'Gohir.A13G097000' => 'ghi', 'Gohir.A13G160000' => 'ghi', 'Gohir.D03G118000' => 'ghi', 'Gohir.D05G090900' => 'ghi', 'Gohir.D08G012750' => 'ghi', 'Gohir.D11G237400' => 'ghi', 'Gohir.D13G102100' => 'ghi', 'Gohir.D13G165200' => 'ghi', 'Gorai.003G124500' => 'gra', 'Gorai.004G006800' => 'gra', 'Gorai.007G250800' => 'gra', 'Gorai.009G093400' => 'gra', 'Gorai.013G114300' => 'gra', 'Gorai.013G197500' => 'gra', 'GSVIVG01029896001' => 'vvi', 'HanXRQChr00c0297g0573161' => 'han', 'HanXRQChr10g0293151' => 'han', 'HanXRQChr10g0300581' => 'han', 'HanXRQChr11g0337951' => 'han', 'Haze_20366' => 'cav', 'Haze_24256' => 'cav', 'Hma1.2p1_0165F.1_g073333' => 'hma', 'Hma1.2p1_1010F.1_g247400' => 'hma', 'Hma1.2p1_1291F.1_g273630' => 'hma', 'HPP92_005921' => 'vpl', 'HPP92_005925' => 'vpl', 'HPP92_008478' => 'vpl', 'Hund15172' => 'sun', 'Hund18858' => 'sun', 'Lalb_Chr04g0252341' => 'lal', 'Lalb_Chr04g0252351' => 'lal', 'Lalb_Chr04g0252361' => 'lal', 'Lalb_Chr10g0103251' => 'lal', 'Lalb_Chr10g0103261' => 'lal', 'Lalb_Chr14g0365081' => 'lal', 'Lalb_Chr15g0082731' => 'lal', 'Lalb_Chr15g0082741' => 'lal', 'Lalb_Chr17g0344981' => 'lal', 'Lalb_Chr18g0050791' => 'lal', 'Lj1A141G50' => 'lonja', 'Lj1g0005282' => 'lja', 'Lj1P1075T62' => 'lonja', 'Lj2P1077T57' => 'lonja', 'Lj6g0005224' => 'lja', 'LjContig00155g0014668' => 'lja', 'Lsat_1_v5_gn_8_85341' => 'lsa', 'Lsat_1_v5_gn_9_112680' => 'lsa', 'Lsat_1_v5_gn_9_26961' => 'lsa', 'Lsat_1_v5_gn_9_30121' => 'lsa', 'Manes.01G164500' => 'mes', 'Manes.02G121900' => 'mes', 'Manes.08G155700' => 'mes', 'Manes.09G134400' => 'mes', 'MBI13_g15011_MAGBIO' => 'mbi', 'MBI19_g06602_MAGBIO' => 'mbi', 'MD03G1075800' => 'mdo', 'MD05G1057800' => 'mdo', 'MD10G1065700' => 'mdo', 'MD11G1080500' => 'mdo', 'MD12G1015000' => 'mdo', 'MD14G1012900' => 'mdo', 'Medtr3g462910' => 'mtr', 'Medtr5g069750' => 'mtr', 'Medtr7g087490' => 'mtr', 'MELO3C008875.2' => 'cme', 'MELO3C020564.2' => 'cme', 'Migut.J01577' => 'egut', 'Migut.N00881' => 'egut', 'Migut.N01846' => 'egut', 'MSTRG.10764' => 'ama', 'MSTRG.19759' => 'ama', 'MSTRG.6275' => 'ama', 'Nitab4.5_0000062g0420' => 'nta', 'Nitab4.5_0000102g0160' => 'nta', 'Nitab4.5_0000123g0050' => 'nta', 'Nitab4.5_0003808g0050' => 'nta', 'Nitab4.5_0003808g0060' => 'nta', 'Nitab4.5_0005500g0020' => 'nta', 'Nitab4.5_0007999g0010' => 'nta', 'Nn2g11384' => 'nnu', 'Nn7g38016' => 'nnu', 'Oeu023030.1' => 'oeu', 'Oeu044220.1' => 'oeu', 'Oeu049274.1' => 'oeu', 'Oeu060743.1' => 'oeu', 'Oeu060745.1' => 'oeu', 'Os01g0812050' => 'osa', 'Os03g0862000' => 'osa', 'Os05g0490400' => 'osa', 'Os07g0472300' => 'osa', 'Os11g0130800' => 'osa', 'Os12g0127650' => 'osa', 'Peaxi162Scf00003g05364' => 'pax', 'Peaxi162Scf00153g01023' => 'pax', 'Peaxi162Scf00216g00115' => 'pax', 'PGR042G3731' => 'pgr', 'PGR119G2260' => 'pgr', 'PGSC0003DMG400004163' => 'stu', 'PGSC0003DMG400019177' => 'stu', 'PGSC0003DMG400028204' => 'stu', 'Phvul.001G101800' => 'pvu', 'Phvul.006G065500' => 'pvu', 'Phvul.008G262800' => 'pvu', 'Potri.001G249000' => 'ptr', 'Potri.009G043000' => 'ptr', 'Potri.013G068800' => 'ptr', 'Potri.019G044500' => 'ptr', 'Prupe.6G060900' => 'ppe', 'Prupe.7G025700' => 'ppe', 'Prupe.8G087600' => 'ppe', 'Psat2g059400' => 'psa', 'Psat3g084320' => 'psa', 'Psat5g160800' => 'psa', 'PSO210G3936' => 'pso', 'PSO210G7347' => 'pso', 'PSO339G0059' => 'pso', 'PSO339G2450' => 'pso', 'PSO384G2823' => 'pso', 'PSO532G0028' => 'pso', 'PSO541G2770' => 'pso', 'PSO801G0543' => 'pso', 'QL01p026846' => 'qlo', 'QL07p015943' => 'qlo', 'RcHm_v2.0_Chr3g0495491' => 'rch', 'RcHm_v2.0_Chr5g0068611' => 'rch', 'RcHm_v2.0_Chr6g0267051' => 'rch', 'Rhsim13G0072200' => 'rsi', 'RhsimUnG0023200' => 'rsi', 'Sabra16G0151100' => 'sbr', 'Sabra19G0054900' => 'sbr', 'SalBow1G2425' => 'sbo', 'SalBow1G6156' => 'sbo', 'SalBow6G5301' => 'sbo', 'SalBow6G5969' => 'sbo', 'Sc01g0007860' => 'sci', 'Sc06g0008410' => 'sci', 'Sc12g0000860' => 'sci', 'Sc22g0002340' => 'sci', 'Sed0005780' => 'sed', 'Sed0008864' => 'sed', 'Sed0026327' => 'sed', 'SEGI_17680' => 'sgi', 'SGA_v2.0_scaffold120G32945' => 'sas', 'SGA_v2.0_scaffold240G44144' => 'sas', 'SGA_v2.0_scaffold66G22332' => 'sas', 'Solyc06g005960.4' => 'sly', 'Solyc10g076650.3' => 'sly', 'Solyc10g076995.1' => 'sly', 'Solyc10g077000.3' => 'sly', 'Solyc10g081200.1' => 'sly', 'Sopen06g001930' => 'spe', 'Sopen10g028260' => 'spe', 'Sopen10g028680' => 'spe', 'Sopen10g031700' => 'spe', 'Sp4g12330' => 'spa', 'Sp6g26360' => 'spa', 'TAR369G0234' => 'tar', 'TAR369G1119' => 'tar', 'TAR623G1062' => 'tar', 'THA.LOC104800720' => 'tha', 'THA.LOC104802888' => 'tha', 'THA.LOC104820809' => 'tha', 'THA.LOC104826297' => 'tha', 'Thecc.05G236600' => 'tca', 'Thecc.09G305600' => 'tca', 'Thhalv10009482m.g' => 'esa', 'Thhalv10012439m.g' => 'esa', 'Thhalv10017594m.g' => 'esa', 'TPR.G13293' => 'tpr', 'TPR.G23643' => 'tpr', 'TPR.G24037' => 'tpr', 'TWI31G1266' => 'twi', 'TWI32G1337' => 'twi', 'TWI34G0003' => 'twi', 'TWI75G0348' => 'twi', 'TWI79G1268' => 'twi', 'unitig_21.g20665' => 'ugi', 'unitig_22.g5220' => 'ugi', 'unitig_8.g3691' => 'ugi', 'unitig_8.g3692' => 'ugi', 'unitig_8.g3693' => 'ugi', 'vmacro07618' => 'vma', 'VMungo0540G2490' => 'vmu', 'VMungo0647G2111' => 'vmu', 'VMungo1383G0089' => 'vmu', 'VMungo1383G0221' => 'vmu', 'Zm00001eb065350' => 'zma', 'Zm00001eb093510' => 'zma', 'Zm00001eb104840' => 'zma', 'Zm00001eb150100' => 'zma', 'Zm00001eb150130' => 'zma', 'Zm00001eb291270' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002005', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002005' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002005', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '330', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002005' ) ), 'genes' => array( 'A03p08550' => 'bna', 'A05p15780' => 'bna', 'A08p35710' => 'bna', 'A10p21570' => 'bna', 'Aa31LG11G11930' => 'aar', 'Aa31LG5G6870' => 'aar', 'Actinidia16071' => 'ach', 'Actinidia16072' => 'ach', 'Actinidia25146' => 'ach', 'Actinidia37843' => 'ach', 'Actinidia38829' => 'ach', 'Ah.13g070760' => 'amhyb', 'AL1G17480' => 'aly', 'AL1G51410' => 'aly', 'AL4G24370' => 'aly', 'Aqoxy3G00499' => 'aox', 'Aqoxy4G02664' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7WLH9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M37KEN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNMS29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU7E8L' => 'arhy', 'AT1G07330' => 'ath', 'AT2G29620' => 'ath', 'AT5G17910' => 'ath', 'ATR0307G088' => 'atr', 'Atru.chr2.1605' => 'acertr', 'Atru.chr2.1606' => 'acertr', 'Atru.chr3.4274' => 'acertr', 'AUR62001686' => 'cqu', 'AUR62007203' => 'cqu', 'AUR62018799' => 'cqu', 'AUR62020096' => 'cqu', 'AUR62037108' => 'cqu', 'AUR62042367' => 'cqu', 'BcaB01g04923' => 'bca', 'BcaB01g05164' => 'bca', 'BcaB02g10266' => 'bca', 'BcaB03g13401' => 'bca', 'BcaB05g22517' => 'bca', 'BcaB08g36725' => 'bca', 'BcaC04g18741' => 'bca', 'BolC3t13486H' => 'bol', 'BolC4t23648H' => 'bol', 'BolC8t47096H' => 'bol', 'BolC9t58754H' => 'bol', 'BraA03t10181Z' => 'bra', 'BraA05t20492Z' => 'bra', 'BraA08t35478Z' => 'bra', 'BraA10t44218Z' => 'bra', 'C03p09980' => 'bna', 'C04p21220' => 'bna', 'C08p02960' => 'bna', 'C09p59060' => 'bna', 'C09p59080' => 'bna', 'CAN.G128.110' => 'can', 'CAN.G483.2' => 'can', 'CAN.G85.12' => 'can', 'CANSAT54G0486' => 'cansat', 'CANSAT78G2106' => 'cansat', 'CARHR122940' => 'chi', 'CARHR195210' => 'chi', 'Carub.0001s0663' => 'cru', 'Carub.0004s1071' => 'cru', 'Carub.0006s1612' => 'cru', 'Ca_03430_v3' => 'car', 'Ca_05585_v3' => 'car', 'Ca_14909_v3' => 'car', 'Cc00_g08730' => 'ccan', 'Cc01_g13930' => 'ccan', 'CDE08G0232' => 'cde', 'CDE09G0963' => 'cde', 'CDE09G1138' => 'cde', 'Cfa011652' => 'cfa', 'Cfa019886' => 'cfa', 'Ciclev10029861m.g' => 'ccl', 'Ciclev10030490m.g' => 'ccl', 'CiPaw.09G053000' => 'cil', 'CiPaw.10G044600' => 'cil', 'CiPaw.11G022800' => 'cil', 'CiPaw.13G080900' => 'cil', 'ClCG03G000910' => 'cla', 'ClCG04G004830' => 'cla', 'ClCG09G013260' => 'cla', 'COL.COLO4_19108' => 'col', 'COL.COLO4_33471' => 'col', 'Cpa.g.sc112.55' => 'cpa', 'Cpa.g.sc117.54' => 'cpa', 'Cpa.g.sc73.39' => 'cpa', 'CsaV3_1G036030' => 'csa', 'CsaV3_4G031680' => 'csa', 'CSS0001466' => 'camsi', 'CSS0028379' => 'camsi', 'CSS0037844' => 'camsi', 'CSS0044657' => 'camsi', 'DCAR_005896' => 'dca', 'DCAR_013506' => 'dca', 'DCAR_020635' => 'dca', 'Dinv14553' => 'din', 'Dinv14554' => 'din', 'Dinv28616' => 'din', 'Dinv28617' => 'din', 'Dinv37045' => 'din', 'Duzib106G2027' => 'dzi', 'Duzib128G1239' => 'dzi', 'Duzib128G1312' => 'dzi', 'Duzib128G1593' => 'dzi', 'Duzib168G1408' => 'dzi', 'Duzib177G0589' => 'dzi', 'ECA236G4805' => 'eca', 'ECA247G0136' => 'eca', 'ECA247G0685' => 'eca', 'ECA248G0533' => 'eca', 'EL10Ac9g21403' => 'bvu', 'Eucgr.A02165' => 'egr', 'FAN11G0187' => 'fan', 'FAN15G1233' => 'fan', 'FAN16G2282' => 'fan', 'FAN19G0929' => 'fan', 'FAN20G0782' => 'fan', 'FAN21G2515' => 'fan', 'FAN24G1358' => 'fan', 'FAN25G0685' => 'fan', 'FAN26G2169' => 'fan', 'FAN27G2381' => 'fan', 'FAN28G0247' => 'fan', 'FvH4_1g29420' => 'fve', 'FvH4_2g10091' => 'fve', 'FvH4_2g10092' => 'fve', 'FvH4_3g38180' => 'fve', 'Glyma.02G225200' => 'gma', 'Glyma.03G004800' => 'gma', 'Glyma.14G192000' => 'gma', 'Glyma.18G065500' => 'gma', 'Glyma.19G121300' => 'gma', 'Gohir.A03G049200' => 'ghi', 'Gohir.A05G090000' => 'ghi', 'Gohir.A08G002050' => 'ghi', 'Gohir.A11G224214' => 'ghi', 'Gohir.A13G097000' => 'ghi', 'Gohir.A13G160000' => 'ghi', 'Gohir.D03G118000' => 'ghi', 'Gohir.D05G090900' => 'ghi', 'Gohir.D08G012750' => 'ghi', 'Gohir.D11G237400' => 'ghi', 'Gohir.D13G102100' => 'ghi', 'Gohir.D13G165200' => 'ghi', 'Gorai.003G124500' => 'gra', 'Gorai.004G006800' => 'gra', 'Gorai.007G250800' => 'gra', 'Gorai.009G093400' => 'gra', 'Gorai.013G114300' => 'gra', 'Gorai.013G197500' => 'gra', 'GSVIVG01029896001' => 'vvi', 'HanXRQChr00c0297g0573161' => 'han', 'HanXRQChr10g0293151' => 'han', 'HanXRQChr10g0300581' => 'han', 'HanXRQChr11g0337951' => 'han', 'Haze_20366' => 'cav', 'Haze_24256' => 'cav', 'Hma1.2p1_0165F.1_g073333' => 'hma', 'Hma1.2p1_1010F.1_g247400' => 'hma', 'Hma1.2p1_1291F.1_g273630' => 'hma', 'HPP92_005921' => 'vpl', 'HPP92_005925' => 'vpl', 'HPP92_008478' => 'vpl', 'Hund15172' => 'sun', 'Hund18858' => 'sun', 'Lalb_Chr04g0252341' => 'lal', 'Lalb_Chr04g0252351' => 'lal', 'Lalb_Chr04g0252361' => 'lal', 'Lalb_Chr10g0103251' => 'lal', 'Lalb_Chr10g0103261' => 'lal', 'Lalb_Chr14g0365081' => 'lal', 'Lalb_Chr15g0082731' => 'lal', 'Lalb_Chr15g0082741' => 'lal', 'Lalb_Chr17g0344981' => 'lal', 'Lalb_Chr18g0050791' => 'lal', 'Lj1A141G50' => 'lonja', 'Lj1g0005282' => 'lja', 'Lj1P1075T62' => 'lonja', 'Lj2P1077T57' => 'lonja', 'Lj6g0005224' => 'lja', 'LjContig00155g0014668' => 'lja', 'Lsat_1_v5_gn_8_85341' => 'lsa', 'Lsat_1_v5_gn_9_112680' => 'lsa', 'Lsat_1_v5_gn_9_26961' => 'lsa', 'Lsat_1_v5_gn_9_30121' => 'lsa', 'Manes.01G164500' => 'mes', 'Manes.02G121900' => 'mes', 'Manes.08G155700' => 'mes', 'Manes.09G134400' => 'mes', 'MBI13_g15011_MAGBIO' => 'mbi', 'MBI19_g06602_MAGBIO' => 'mbi', 'MD03G1075800' => 'mdo', 'MD05G1057800' => 'mdo', 'MD10G1065700' => 'mdo', 'MD11G1080500' => 'mdo', 'MD12G1015000' => 'mdo', 'MD14G1012900' => 'mdo', 'Medtr3g462910' => 'mtr', 'Medtr5g069750' => 'mtr', 'Medtr7g087490' => 'mtr', 'MELO3C008875.2' => 'cme', 'MELO3C020564.2' => 'cme', 'Migut.J01577' => 'egut', 'Migut.N00881' => 'egut', 'Migut.N01846' => 'egut', 'MSTRG.10764' => 'ama', 'MSTRG.19759' => 'ama', 'MSTRG.6275' => 'ama', 'Nitab4.5_0000062g0420' => 'nta', 'Nitab4.5_0000102g0160' => 'nta', 'Nitab4.5_0000123g0050' => 'nta', 'Nitab4.5_0003808g0050' => 'nta', 'Nitab4.5_0003808g0060' => 'nta', 'Nitab4.5_0005500g0020' => 'nta', 'Nitab4.5_0007999g0010' => 'nta', 'Nn2g11384' => 'nnu', 'Nn7g38016' => 'nnu', 'Oeu023030.1' => 'oeu', 'Oeu044220.1' => 'oeu', 'Oeu049274.1' => 'oeu', 'Oeu060743.1' => 'oeu', 'Oeu060745.1' => 'oeu', 'Os01g0812050' => 'osa', 'Os03g0862000' => 'osa', 'Os05g0490400' => 'osa', 'Os07g0472300' => 'osa', 'Os11g0130800' => 'osa', 'Os12g0127650' => 'osa', 'Peaxi162Scf00003g05364' => 'pax', 'Peaxi162Scf00153g01023' => 'pax', 'Peaxi162Scf00216g00115' => 'pax', 'PGR042G3731' => 'pgr', 'PGR119G2260' => 'pgr', 'PGSC0003DMG400004163' => 'stu', 'PGSC0003DMG400019177' => 'stu', 'PGSC0003DMG400028204' => 'stu', 'Phvul.001G101800' => 'pvu', 'Phvul.006G065500' => 'pvu', 'Phvul.008G262800' => 'pvu', 'Potri.001G249000' => 'ptr', 'Potri.009G043000' => 'ptr', 'Potri.013G068800' => 'ptr', 'Potri.019G044500' => 'ptr', 'Prupe.6G060900' => 'ppe', 'Prupe.7G025700' => 'ppe', 'Prupe.8G087600' => 'ppe', 'Psat2g059400' => 'psa', 'Psat3g084320' => 'psa', 'Psat5g160800' => 'psa', 'PSO210G3936' => 'pso', 'PSO210G7347' => 'pso', 'PSO339G0059' => 'pso', 'PSO339G2450' => 'pso', 'PSO384G2823' => 'pso', 'PSO532G0028' => 'pso', 'PSO541G2770' => 'pso', 'PSO801G0543' => 'pso', 'QL01p026846' => 'qlo', 'QL07p015943' => 'qlo', 'RcHm_v2.0_Chr3g0495491' => 'rch', 'RcHm_v2.0_Chr5g0068611' => 'rch', 'RcHm_v2.0_Chr6g0267051' => 'rch', 'Rhsim13G0072200' => 'rsi', 'RhsimUnG0023200' => 'rsi', 'Sabra16G0151100' => 'sbr', 'Sabra19G0054900' => 'sbr', 'SalBow1G2425' => 'sbo', 'SalBow1G6156' => 'sbo', 'SalBow6G5301' => 'sbo', 'SalBow6G5969' => 'sbo', 'Sc01g0007860' => 'sci', 'Sc06g0008410' => 'sci', 'Sc12g0000860' => 'sci', 'Sc22g0002340' => 'sci', 'Sed0005780' => 'sed', 'Sed0008864' => 'sed', 'Sed0026327' => 'sed', 'SEGI_17680' => 'sgi', 'SGA_v2.0_scaffold120G32945' => 'sas', 'SGA_v2.0_scaffold240G44144' => 'sas', 'SGA_v2.0_scaffold66G22332' => 'sas', 'Solyc06g005960.4' => 'sly', 'Solyc10g076650.3' => 'sly', 'Solyc10g076995.1' => 'sly', 'Solyc10g077000.3' => 'sly', 'Solyc10g081200.1' => 'sly', 'Sopen06g001930' => 'spe', 'Sopen10g028260' => 'spe', 'Sopen10g028680' => 'spe', 'Sopen10g031700' => 'spe', 'Sp4g12330' => 'spa', 'Sp6g26360' => 'spa', 'TAR369G0234' => 'tar', 'TAR369G1119' => 'tar', 'TAR623G1062' => 'tar', 'THA.LOC104800720' => 'tha', 'THA.LOC104802888' => 'tha', 'THA.LOC104820809' => 'tha', 'THA.LOC104826297' => 'tha', 'Thecc.05G236600' => 'tca', 'Thecc.09G305600' => 'tca', 'Thhalv10009482m.g' => 'esa', 'Thhalv10012439m.g' => 'esa', 'Thhalv10017594m.g' => 'esa', 'TPR.G13293' => 'tpr', 'TPR.G23643' => 'tpr', 'TPR.G24037' => 'tpr', 'TWI31G1266' => 'twi', 'TWI32G1337' => 'twi', 'TWI34G0003' => 'twi', 'TWI75G0348' => 'twi', 'TWI79G1268' => 'twi', 'unitig_21.g20665' => 'ugi', 'unitig_22.g5220' => 'ugi', 'unitig_8.g3691' => 'ugi', 'unitig_8.g3692' => 'ugi', 'unitig_8.g3693' => 'ugi', 'vmacro07618' => 'vma', 'VMungo0540G2490' => 'vmu', 'VMungo0647G2111' => 'vmu', 'VMungo1383G0089' => 'vmu', 'VMungo1383G0221' => 'vmu', 'Zm00001eb065350' => 'zma', 'Zm00001eb093510' => 'zma', 'Zm00001eb104840' => 'zma', 'Zm00001eb150100' => 'zma', 'Zm00001eb150130' => 'zma', 'Zm00001eb291270' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002005' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002005' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002005' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002005' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002005', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '330', 'num_species' => '91' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p08550' => 'bna', 'A05p15780' => 'bna', 'A08p35710' => 'bna', 'A10p21570' => 'bna', 'Aa31LG11G11930' => 'aar', 'Aa31LG5G6870' => 'aar', 'Actinidia16071' => 'ach', 'Actinidia16072' => 'ach', 'Actinidia25146' => 'ach', 'Actinidia37843' => 'ach', 'Actinidia38829' => 'ach', 'Ah.13g070760' => 'amhyb', 'AL1G17480' => 'aly', 'AL1G51410' => 'aly', 'AL4G24370' => 'aly', 'Aqoxy3G00499' => 'aox', 'Aqoxy4G02664' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7WLH9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M37KEN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNMS29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU7E8L' => 'arhy', 'AT1G07330' => 'ath', 'AT2G29620' => 'ath', 'AT5G17910' => 'ath', 'ATR0307G088' => 'atr', 'Atru.chr2.1605' => 'acertr', 'Atru.chr2.1606' => 'acertr', 'Atru.chr3.4274' => 'acertr', 'AUR62001686' => 'cqu', 'AUR62007203' => 'cqu', 'AUR62018799' => 'cqu', 'AUR62020096' => 'cqu', 'AUR62037108' => 'cqu', 'AUR62042367' => 'cqu', 'BcaB01g04923' => 'bca', 'BcaB01g05164' => 'bca', 'BcaB02g10266' => 'bca', 'BcaB03g13401' => 'bca', 'BcaB05g22517' => 'bca', 'BcaB08g36725' => 'bca', 'BcaC04g18741' => 'bca', 'BolC3t13486H' => 'bol', 'BolC4t23648H' => 'bol', 'BolC8t47096H' => 'bol', 'BolC9t58754H' => 'bol', 'BraA03t10181Z' => 'bra', 'BraA05t20492Z' => 'bra', 'BraA08t35478Z' => 'bra', 'BraA10t44218Z' => 'bra', 'C03p09980' => 'bna', 'C04p21220' => 'bna', 'C08p02960' => 'bna', 'C09p59060' => 'bna', 'C09p59080' => 'bna', 'CAN.G128.110' => 'can', 'CAN.G483.2' => 'can', 'CAN.G85.12' => 'can', 'CANSAT54G0486' => 'cansat', 'CANSAT78G2106' => 'cansat', 'CARHR122940' => 'chi', 'CARHR195210' => 'chi', 'Carub.0001s0663' => 'cru', 'Carub.0004s1071' => 'cru', 'Carub.0006s1612' => 'cru', 'Ca_03430_v3' => 'car', 'Ca_05585_v3' => 'car', 'Ca_14909_v3' => 'car', 'Cc00_g08730' => 'ccan', 'Cc01_g13930' => 'ccan', 'CDE08G0232' => 'cde', 'CDE09G0963' => 'cde', 'CDE09G1138' => 'cde', 'Cfa011652' => 'cfa', 'Cfa019886' => 'cfa', 'Ciclev10029861m.g' => 'ccl', 'Ciclev10030490m.g' => 'ccl', 'CiPaw.09G053000' => 'cil', 'CiPaw.10G044600' => 'cil', 'CiPaw.11G022800' => 'cil', 'CiPaw.13G080900' => 'cil', 'ClCG03G000910' => 'cla', 'ClCG04G004830' => 'cla', 'ClCG09G013260' => 'cla', 'COL.COLO4_19108' => 'col', 'COL.COLO4_33471' => 'col', 'Cpa.g.sc112.55' => 'cpa', 'Cpa.g.sc117.54' => 'cpa', 'Cpa.g.sc73.39' => 'cpa', 'CsaV3_1G036030' => 'csa', 'CsaV3_4G031680' => 'csa', 'CSS0001466' => 'camsi', 'CSS0028379' => 'camsi', 'CSS0037844' => 'camsi', 'CSS0044657' => 'camsi', 'DCAR_005896' => 'dca', 'DCAR_013506' => 'dca', 'DCAR_020635' => 'dca', 'Dinv14553' => 'din', 'Dinv14554' => 'din', 'Dinv28616' => 'din', 'Dinv28617' => 'din', 'Dinv37045' => 'din', 'Duzib106G2027' => 'dzi', 'Duzib128G1239' => 'dzi', 'Duzib128G1312' => 'dzi', 'Duzib128G1593' => 'dzi', 'Duzib168G1408' => 'dzi', 'Duzib177G0589' => 'dzi', 'ECA236G4805' => 'eca', 'ECA247G0136' => 'eca', 'ECA247G0685' => 'eca', 'ECA248G0533' => 'eca', 'EL10Ac9g21403' => 'bvu', 'Eucgr.A02165' => 'egr', 'FAN11G0187' => 'fan', 'FAN15G1233' => 'fan', 'FAN16G2282' => 'fan', 'FAN19G0929' => 'fan', 'FAN20G0782' => 'fan', 'FAN21G2515' => 'fan', 'FAN24G1358' => 'fan', 'FAN25G0685' => 'fan', 'FAN26G2169' => 'fan', 'FAN27G2381' => 'fan', 'FAN28G0247' => 'fan', 'FvH4_1g29420' => 'fve', 'FvH4_2g10091' => 'fve', 'FvH4_2g10092' => 'fve', 'FvH4_3g38180' => 'fve', 'Glyma.02G225200' => 'gma', 'Glyma.03G004800' => 'gma', 'Glyma.14G192000' => 'gma', 'Glyma.18G065500' => 'gma', 'Glyma.19G121300' => 'gma', 'Gohir.A03G049200' => 'ghi', 'Gohir.A05G090000' => 'ghi', 'Gohir.A08G002050' => 'ghi', 'Gohir.A11G224214' => 'ghi', 'Gohir.A13G097000' => 'ghi', 'Gohir.A13G160000' => 'ghi', 'Gohir.D03G118000' => 'ghi', 'Gohir.D05G090900' => 'ghi', 'Gohir.D08G012750' => 'ghi', 'Gohir.D11G237400' => 'ghi', 'Gohir.D13G102100' => 'ghi', 'Gohir.D13G165200' => 'ghi', 'Gorai.003G124500' => 'gra', 'Gorai.004G006800' => 'gra', 'Gorai.007G250800' => 'gra', 'Gorai.009G093400' => 'gra', 'Gorai.013G114300' => 'gra', 'Gorai.013G197500' => 'gra', 'GSVIVG01029896001' => 'vvi', 'HanXRQChr00c0297g0573161' => 'han', 'HanXRQChr10g0293151' => 'han', 'HanXRQChr10g0300581' => 'han', 'HanXRQChr11g0337951' => 'han', 'Haze_20366' => 'cav', 'Haze_24256' => 'cav', 'Hma1.2p1_0165F.1_g073333' => 'hma', 'Hma1.2p1_1010F.1_g247400' => 'hma', 'Hma1.2p1_1291F.1_g273630' => 'hma', 'HPP92_005921' => 'vpl', 'HPP92_005925' => 'vpl', 'HPP92_008478' => 'vpl', 'Hund15172' => 'sun', 'Hund18858' => 'sun', 'Lalb_Chr04g0252341' => 'lal', 'Lalb_Chr04g0252351' => 'lal', 'Lalb_Chr04g0252361' => 'lal', 'Lalb_Chr10g0103251' => 'lal', 'Lalb_Chr10g0103261' => 'lal', 'Lalb_Chr14g0365081' => 'lal', 'Lalb_Chr15g0082731' => 'lal', 'Lalb_Chr15g0082741' => 'lal', 'Lalb_Chr17g0344981' => 'lal', 'Lalb_Chr18g0050791' => 'lal', 'Lj1A141G50' => 'lonja', 'Lj1g0005282' => 'lja', 'Lj1P1075T62' => 'lonja', 'Lj2P1077T57' => 'lonja', 'Lj6g0005224' => 'lja', 'LjContig00155g0014668' => 'lja', 'Lsat_1_v5_gn_8_85341' => 'lsa', 'Lsat_1_v5_gn_9_112680' => 'lsa', 'Lsat_1_v5_gn_9_26961' => 'lsa', 'Lsat_1_v5_gn_9_30121' => 'lsa', 'Manes.01G164500' => 'mes', 'Manes.02G121900' => 'mes', 'Manes.08G155700' => 'mes', 'Manes.09G134400' => 'mes', 'MBI13_g15011_MAGBIO' => 'mbi', 'MBI19_g06602_MAGBIO' => 'mbi', 'MD03G1075800' => 'mdo', 'MD05G1057800' => 'mdo', 'MD10G1065700' => 'mdo', 'MD11G1080500' => 'mdo', 'MD12G1015000' => 'mdo', 'MD14G1012900' => 'mdo', 'Medtr3g462910' => 'mtr', 'Medtr5g069750' => 'mtr', 'Medtr7g087490' => 'mtr', 'MELO3C008875.2' => 'cme', 'MELO3C020564.2' => 'cme', 'Migut.J01577' => 'egut', 'Migut.N00881' => 'egut', 'Migut.N01846' => 'egut', 'MSTRG.10764' => 'ama', 'MSTRG.19759' => 'ama', 'MSTRG.6275' => 'ama', 'Nitab4.5_0000062g0420' => 'nta', 'Nitab4.5_0000102g0160' => 'nta', 'Nitab4.5_0000123g0050' => 'nta', 'Nitab4.5_0003808g0050' => 'nta', 'Nitab4.5_0003808g0060' => 'nta', 'Nitab4.5_0005500g0020' => 'nta', 'Nitab4.5_0007999g0010' => 'nta', 'Nn2g11384' => 'nnu', 'Nn7g38016' => 'nnu', 'Oeu023030.1' => 'oeu', 'Oeu044220.1' => 'oeu', 'Oeu049274.1' => 'oeu', 'Oeu060743.1' => 'oeu', 'Oeu060745.1' => 'oeu', 'Os01g0812050' => 'osa', 'Os03g0862000' => 'osa', 'Os05g0490400' => 'osa', 'Os07g0472300' => 'osa', 'Os11g0130800' => 'osa', 'Os12g0127650' => 'osa', 'Peaxi162Scf00003g05364' => 'pax', 'Peaxi162Scf00153g01023' => 'pax', 'Peaxi162Scf00216g00115' => 'pax', 'PGR042G3731' => 'pgr', 'PGR119G2260' => 'pgr', 'PGSC0003DMG400004163' => 'stu', 'PGSC0003DMG400019177' => 'stu', 'PGSC0003DMG400028204' => 'stu', 'Phvul.001G101800' => 'pvu', 'Phvul.006G065500' => 'pvu', 'Phvul.008G262800' => 'pvu', 'Potri.001G249000' => 'ptr', 'Potri.009G043000' => 'ptr', 'Potri.013G068800' => 'ptr', 'Potri.019G044500' => 'ptr', 'Prupe.6G060900' => 'ppe', 'Prupe.7G025700' => 'ppe', 'Prupe.8G087600' => 'ppe', 'Psat2g059400' => 'psa', 'Psat3g084320' => 'psa', 'Psat5g160800' => 'psa', 'PSO210G3936' => 'pso', 'PSO210G7347' => 'pso', 'PSO339G0059' => 'pso', 'PSO339G2450' => 'pso', 'PSO384G2823' => 'pso', 'PSO532G0028' => 'pso', 'PSO541G2770' => 'pso', 'PSO801G0543' => 'pso', 'QL01p026846' => 'qlo', 'QL07p015943' => 'qlo', 'RcHm_v2.0_Chr3g0495491' => 'rch', 'RcHm_v2.0_Chr5g0068611' => 'rch', 'RcHm_v2.0_Chr6g0267051' => 'rch', 'Rhsim13G0072200' => 'rsi', 'RhsimUnG0023200' => 'rsi', 'Sabra16G0151100' => 'sbr', 'Sabra19G0054900' => 'sbr', 'SalBow1G2425' => 'sbo', 'SalBow1G6156' => 'sbo', 'SalBow6G5301' => 'sbo', 'SalBow6G5969' => 'sbo', 'Sc01g0007860' => 'sci', 'Sc06g0008410' => 'sci', 'Sc12g0000860' => 'sci', 'Sc22g0002340' => 'sci', 'Sed0005780' => 'sed', 'Sed0008864' => 'sed', 'Sed0026327' => 'sed', 'SEGI_17680' => 'sgi', 'SGA_v2.0_scaffold120G32945' => 'sas', 'SGA_v2.0_scaffold240G44144' => 'sas', 'SGA_v2.0_scaffold66G22332' => 'sas', 'Solyc06g005960.4' => 'sly', 'Solyc10g076650.3' => 'sly', 'Solyc10g076995.1' => 'sly', 'Solyc10g077000.3' => 'sly', 'Solyc10g081200.1' => 'sly', 'Sopen06g001930' => 'spe', 'Sopen10g028260' => 'spe', 'Sopen10g028680' => 'spe', 'Sopen10g031700' => 'spe', 'Sp4g12330' => 'spa', 'Sp6g26360' => 'spa', 'TAR369G0234' => 'tar', 'TAR369G1119' => 'tar', 'TAR623G1062' => 'tar', 'THA.LOC104800720' => 'tha', 'THA.LOC104802888' => 'tha', 'THA.LOC104820809' => 'tha', 'THA.LOC104826297' => 'tha', 'Thecc.05G236600' => 'tca', 'Thecc.09G305600' => 'tca', 'Thhalv10009482m.g' => 'esa', 'Thhalv10012439m.g' => 'esa', 'Thhalv10017594m.g' => 'esa', 'TPR.G13293' => 'tpr', 'TPR.G23643' => 'tpr', 'TPR.G24037' => 'tpr', 'TWI31G1266' => 'twi', 'TWI32G1337' => 'twi', 'TWI34G0003' => 'twi', 'TWI75G0348' => 'twi', 'TWI79G1268' => 'twi', 'unitig_21.g20665' => 'ugi', 'unitig_22.g5220' => 'ugi', 'unitig_8.g3691' => 'ugi', 'unitig_8.g3692' => 'ugi', 'unitig_8.g3693' => 'ugi', 'vmacro07618' => 'vma', 'VMungo0540G2490' => 'vmu', 'VMungo0647G2111' => 'vmu', 'VMungo1383G0089' => 'vmu', 'VMungo1383G0221' => 'vmu', 'Zm00001eb065350' => 'zma', 'Zm00001eb093510' => 'zma', 'Zm00001eb104840' => 'zma', 'Zm00001eb150100' => 'zma', 'Zm00001eb150130' => 'zma', 'Zm00001eb291270' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002005', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002005' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002005', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '330', 'num_species' => '91' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002005' ) ), 'genes' => array( 'A03p08550' => 'bna', 'A05p15780' => 'bna', 'A08p35710' => 'bna', 'A10p21570' => 'bna', 'Aa31LG11G11930' => 'aar', 'Aa31LG5G6870' => 'aar', 'Actinidia16071' => 'ach', 'Actinidia16072' => 'ach', 'Actinidia25146' => 'ach', 'Actinidia37843' => 'ach', 'Actinidia38829' => 'ach', 'Ah.13g070760' => 'amhyb', 'AL1G17480' => 'aly', 'AL1G51410' => 'aly', 'AL4G24370' => 'aly', 'Aqoxy3G00499' => 'aox', 'Aqoxy4G02664' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7WLH9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M37KEN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QNMS29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XU7E8L' => 'arhy', 'AT1G07330' => 'ath', 'AT2G29620' => 'ath', 'AT5G17910' => 'ath', 'ATR0307G088' => 'atr', 'Atru.chr2.1605' => 'acertr', 'Atru.chr2.1606' => 'acertr', 'Atru.chr3.4274' => 'acertr', 'AUR62001686' => 'cqu', 'AUR62007203' => 'cqu', 'AUR62018799' => 'cqu', 'AUR62020096' => 'cqu', 'AUR62037108' => 'cqu', 'AUR62042367' => 'cqu', 'BcaB01g04923' => 'bca', 'BcaB01g05164' => 'bca', 'BcaB02g10266' => 'bca', 'BcaB03g13401' => 'bca', 'BcaB05g22517' => 'bca', 'BcaB08g36725' => 'bca', 'BcaC04g18741' => 'bca', 'BolC3t13486H' => 'bol', 'BolC4t23648H' => 'bol', 'BolC8t47096H' => 'bol', 'BolC9t58754H' => 'bol', 'BraA03t10181Z' => 'bra', 'BraA05t20492Z' => 'bra', 'BraA08t35478Z' => 'bra', 'BraA10t44218Z' => 'bra', 'C03p09980' => 'bna', 'C04p21220' => 'bna', 'C08p02960' => 'bna', 'C09p59060' => 'bna', 'C09p59080' => 'bna', 'CAN.G128.110' => 'can', 'CAN.G483.2' => 'can', 'CAN.G85.12' => 'can', 'CANSAT54G0486' => 'cansat', 'CANSAT78G2106' => 'cansat', 'CARHR122940' => 'chi', 'CARHR195210' => 'chi', 'Carub.0001s0663' => 'cru', 'Carub.0004s1071' => 'cru', 'Carub.0006s1612' => 'cru', 'Ca_03430_v3' => 'car', 'Ca_05585_v3' => 'car', 'Ca_14909_v3' => 'car', 'Cc00_g08730' => 'ccan', 'Cc01_g13930' => 'ccan', 'CDE08G0232' => 'cde', 'CDE09G0963' => 'cde', 'CDE09G1138' => 'cde', 'Cfa011652' => 'cfa', 'Cfa019886' => 'cfa', 'Ciclev10029861m.g' => 'ccl', 'Ciclev10030490m.g' => 'ccl', 'CiPaw.09G053000' => 'cil', 'CiPaw.10G044600' => 'cil', 'CiPaw.11G022800' => 'cil', 'CiPaw.13G080900' => 'cil', 'ClCG03G000910' => 'cla', 'ClCG04G004830' => 'cla', 'ClCG09G013260' => 'cla', 'COL.COLO4_19108' => 'col', 'COL.COLO4_33471' => 'col', 'Cpa.g.sc112.55' => 'cpa', 'Cpa.g.sc117.54' => 'cpa', 'Cpa.g.sc73.39' => 'cpa', 'CsaV3_1G036030' => 'csa', 'CsaV3_4G031680' => 'csa', 'CSS0001466' => 'camsi', 'CSS0028379' => 'camsi', 'CSS0037844' => 'camsi', 'CSS0044657' => 'camsi', 'DCAR_005896' => 'dca', 'DCAR_013506' => 'dca', 'DCAR_020635' => 'dca', 'Dinv14553' => 'din', 'Dinv14554' => 'din', 'Dinv28616' => 'din', 'Dinv28617' => 'din', 'Dinv37045' => 'din', 'Duzib106G2027' => 'dzi', 'Duzib128G1239' => 'dzi', 'Duzib128G1312' => 'dzi', 'Duzib128G1593' => 'dzi', 'Duzib168G1408' => 'dzi', 'Duzib177G0589' => 'dzi', 'ECA236G4805' => 'eca', 'ECA247G0136' => 'eca', 'ECA247G0685' => 'eca', 'ECA248G0533' => 'eca', 'EL10Ac9g21403' => 'bvu', 'Eucgr.A02165' => 'egr', 'FAN11G0187' => 'fan', 'FAN15G1233' => 'fan', 'FAN16G2282' => 'fan', 'FAN19G0929' => 'fan', 'FAN20G0782' => 'fan', 'FAN21G2515' => 'fan', 'FAN24G1358' => 'fan', 'FAN25G0685' => 'fan', 'FAN26G2169' => 'fan', 'FAN27G2381' => 'fan', 'FAN28G0247' => 'fan', 'FvH4_1g29420' => 'fve', 'FvH4_2g10091' => 'fve', 'FvH4_2g10092' => 'fve', 'FvH4_3g38180' => 'fve', 'Glyma.02G225200' => 'gma', 'Glyma.03G004800' => 'gma', 'Glyma.14G192000' => 'gma', 'Glyma.18G065500' => 'gma', 'Glyma.19G121300' => 'gma', 'Gohir.A03G049200' => 'ghi', 'Gohir.A05G090000' => 'ghi', 'Gohir.A08G002050' => 'ghi', 'Gohir.A11G224214' => 'ghi', 'Gohir.A13G097000' => 'ghi', 'Gohir.A13G160000' => 'ghi', 'Gohir.D03G118000' => 'ghi', 'Gohir.D05G090900' => 'ghi', 'Gohir.D08G012750' => 'ghi', 'Gohir.D11G237400' => 'ghi', 'Gohir.D13G102100' => 'ghi', 'Gohir.D13G165200' => 'ghi', 'Gorai.003G124500' => 'gra', 'Gorai.004G006800' => 'gra', 'Gorai.007G250800' => 'gra', 'Gorai.009G093400' => 'gra', 'Gorai.013G114300' => 'gra', 'Gorai.013G197500' => 'gra', 'GSVIVG01029896001' => 'vvi', 'HanXRQChr00c0297g0573161' => 'han', 'HanXRQChr10g0293151' => 'han', 'HanXRQChr10g0300581' => 'han', 'HanXRQChr11g0337951' => 'han', 'Haze_20366' => 'cav', 'Haze_24256' => 'cav', 'Hma1.2p1_0165F.1_g073333' => 'hma', 'Hma1.2p1_1010F.1_g247400' => 'hma', 'Hma1.2p1_1291F.1_g273630' => 'hma', 'HPP92_005921' => 'vpl', 'HPP92_005925' => 'vpl', 'HPP92_008478' => 'vpl', 'Hund15172' => 'sun', 'Hund18858' => 'sun', 'Lalb_Chr04g0252341' => 'lal', 'Lalb_Chr04g0252351' => 'lal', 'Lalb_Chr04g0252361' => 'lal', 'Lalb_Chr10g0103251' => 'lal', 'Lalb_Chr10g0103261' => 'lal', 'Lalb_Chr14g0365081' => 'lal', 'Lalb_Chr15g0082731' => 'lal', 'Lalb_Chr15g0082741' => 'lal', 'Lalb_Chr17g0344981' => 'lal', 'Lalb_Chr18g0050791' => 'lal', 'Lj1A141G50' => 'lonja', 'Lj1g0005282' => 'lja', 'Lj1P1075T62' => 'lonja', 'Lj2P1077T57' => 'lonja', 'Lj6g0005224' => 'lja', 'LjContig00155g0014668' => 'lja', 'Lsat_1_v5_gn_8_85341' => 'lsa', 'Lsat_1_v5_gn_9_112680' => 'lsa', 'Lsat_1_v5_gn_9_26961' => 'lsa', 'Lsat_1_v5_gn_9_30121' => 'lsa', 'Manes.01G164500' => 'mes', 'Manes.02G121900' => 'mes', 'Manes.08G155700' => 'mes', 'Manes.09G134400' => 'mes', 'MBI13_g15011_MAGBIO' => 'mbi', 'MBI19_g06602_MAGBIO' => 'mbi', 'MD03G1075800' => 'mdo', 'MD05G1057800' => 'mdo', 'MD10G1065700' => 'mdo', 'MD11G1080500' => 'mdo', 'MD12G1015000' => 'mdo', 'MD14G1012900' => 'mdo', 'Medtr3g462910' => 'mtr', 'Medtr5g069750' => 'mtr', 'Medtr7g087490' => 'mtr', 'MELO3C008875.2' => 'cme', 'MELO3C020564.2' => 'cme', 'Migut.J01577' => 'egut', 'Migut.N00881' => 'egut', 'Migut.N01846' => 'egut', 'MSTRG.10764' => 'ama', 'MSTRG.19759' => 'ama', 'MSTRG.6275' => 'ama', 'Nitab4.5_0000062g0420' => 'nta', 'Nitab4.5_0000102g0160' => 'nta', 'Nitab4.5_0000123g0050' => 'nta', 'Nitab4.5_0003808g0050' => 'nta', 'Nitab4.5_0003808g0060' => 'nta', 'Nitab4.5_0005500g0020' => 'nta', 'Nitab4.5_0007999g0010' => 'nta', 'Nn2g11384' => 'nnu', 'Nn7g38016' => 'nnu', 'Oeu023030.1' => 'oeu', 'Oeu044220.1' => 'oeu', 'Oeu049274.1' => 'oeu', 'Oeu060743.1' => 'oeu', 'Oeu060745.1' => 'oeu', 'Os01g0812050' => 'osa', 'Os03g0862000' => 'osa', 'Os05g0490400' => 'osa', 'Os07g0472300' => 'osa', 'Os11g0130800' => 'osa', 'Os12g0127650' => 'osa', 'Peaxi162Scf00003g05364' => 'pax', 'Peaxi162Scf00153g01023' => 'pax', 'Peaxi162Scf00216g00115' => 'pax', 'PGR042G3731' => 'pgr', 'PGR119G2260' => 'pgr', 'PGSC0003DMG400004163' => 'stu', 'PGSC0003DMG400019177' => 'stu', 'PGSC0003DMG400028204' => 'stu', 'Phvul.001G101800' => 'pvu', 'Phvul.006G065500' => 'pvu', 'Phvul.008G262800' => 'pvu', 'Potri.001G249000' => 'ptr', 'Potri.009G043000' => 'ptr', 'Potri.013G068800' => 'ptr', 'Potri.019G044500' => 'ptr', 'Prupe.6G060900' => 'ppe', 'Prupe.7G025700' => 'ppe', 'Prupe.8G087600' => 'ppe', 'Psat2g059400' => 'psa', 'Psat3g084320' => 'psa', 'Psat5g160800' => 'psa', 'PSO210G3936' => 'pso', 'PSO210G7347' => 'pso', 'PSO339G0059' => 'pso', 'PSO339G2450' => 'pso', 'PSO384G2823' => 'pso', 'PSO532G0028' => 'pso', 'PSO541G2770' => 'pso', 'PSO801G0543' => 'pso', 'QL01p026846' => 'qlo', 'QL07p015943' => 'qlo', 'RcHm_v2.0_Chr3g0495491' => 'rch', 'RcHm_v2.0_Chr5g0068611' => 'rch', 'RcHm_v2.0_Chr6g0267051' => 'rch', 'Rhsim13G0072200' => 'rsi', 'RhsimUnG0023200' => 'rsi', 'Sabra16G0151100' => 'sbr', 'Sabra19G0054900' => 'sbr', 'SalBow1G2425' => 'sbo', 'SalBow1G6156' => 'sbo', 'SalBow6G5301' => 'sbo', 'SalBow6G5969' => 'sbo', 'Sc01g0007860' => 'sci', 'Sc06g0008410' => 'sci', 'Sc12g0000860' => 'sci', 'Sc22g0002340' => 'sci', 'Sed0005780' => 'sed', 'Sed0008864' => 'sed', 'Sed0026327' => 'sed', 'SEGI_17680' => 'sgi', 'SGA_v2.0_scaffold120G32945' => 'sas', 'SGA_v2.0_scaffold240G44144' => 'sas', 'SGA_v2.0_scaffold66G22332' => 'sas', 'Solyc06g005960.4' => 'sly', 'Solyc10g076650.3' => 'sly', 'Solyc10g076995.1' => 'sly', 'Solyc10g077000.3' => 'sly', 'Solyc10g081200.1' => 'sly', 'Sopen06g001930' => 'spe', 'Sopen10g028260' => 'spe', 'Sopen10g028680' => 'spe', 'Sopen10g031700' => 'spe', 'Sp4g12330' => 'spa', 'Sp6g26360' => 'spa', 'TAR369G0234' => 'tar', 'TAR369G1119' => 'tar', 'TAR623G1062' => 'tar', 'THA.LOC104800720' => 'tha', 'THA.LOC104802888' => 'tha', 'THA.LOC104820809' => 'tha', 'THA.LOC104826297' => 'tha', 'Thecc.05G236600' => 'tca', 'Thecc.09G305600' => 'tca', 'Thhalv10009482m.g' => 'esa', 'Thhalv10012439m.g' => 'esa', 'Thhalv10017594m.g' => 'esa', 'TPR.G13293' => 'tpr', 'TPR.G23643' => 'tpr', 'TPR.G24037' => 'tpr', 'TWI31G1266' => 'twi', 'TWI32G1337' => 'twi', 'TWI34G0003' => 'twi', 'TWI75G0348' => 'twi', 'TWI79G1268' => 'twi', 'unitig_21.g20665' => 'ugi', 'unitig_22.g5220' => 'ugi', 'unitig_8.g3691' => 'ugi', 'unitig_8.g3692' => 'ugi', 'unitig_8.g3693' => 'ugi', 'vmacro07618' => 'vma', 'VMungo0540G2490' => 'vmu', 'VMungo0647G2111' => 'vmu', 'VMungo1383G0089' => 'vmu', 'VMungo1383G0221' => 'vmu', 'Zm00001eb065350' => 'zma', 'Zm00001eb093510' => 'zma', 'Zm00001eb104840' => 'zma', 'Zm00001eb150100' => 'zma', 'Zm00001eb150130' => 'zma', 'Zm00001eb291270' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002005' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002005' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002005' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002005' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151