Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p08550 Brassica napus
A05p15780 Brassica napus
A08p35710 Brassica napus
A10p21570 Brassica napus
Aa31LG11G11930 Aethionema arabicum
Aa31LG5G6870 Aethionema arabicum
Actinidia16071 Actinidia chinensis
Actinidia16072 Actinidia chinensis
Actinidia25146 Actinidia chinensis
Actinidia37843 Actinidia chinensis
Actinidia38829 Actinidia chinensis
Ah.13g070760 Amaranthus hybridus
AL1G17480 Arabidopsis lyrata
AL1G51410 Arabidopsis lyrata
AL4G24370 Arabidopsis lyrata
Aqoxy3G00499 Aquilegia oxysepala
Aqoxy4G02664 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7WLH9S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M37KEN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QNMS29 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XU7E8L Arachis hypogaea
AT1G07330 Arabidopsis thaliana
AT2G29620 Arabidopsis thaliana
AT5G17910 Arabidopsis thaliana
ATR0307G088 Amborella trichopoda
Atru.chr2.1605 Acer truncatum
Atru.chr2.1606 Acer truncatum
Atru.chr3.4274 Acer truncatum
AUR62001686 Chenopodium quinoa
AUR62007203 Chenopodium quinoa
AUR62018799 Chenopodium quinoa
AUR62020096 Chenopodium quinoa
AUR62037108 Chenopodium quinoa
AUR62042367 Chenopodium quinoa
BcaB01g04923 Brassica carinata
BcaB01g05164 Brassica carinata
BcaB02g10266 Brassica carinata
BcaB03g13401 Brassica carinata
BcaB05g22517 Brassica carinata
BcaB08g36725 Brassica carinata
BcaC04g18741 Brassica carinata
BolC3t13486H Brassica oleracea
BolC4t23648H Brassica oleracea
BolC8t47096H Brassica oleracea
BolC9t58754H Brassica oleracea
BraA03t10181Z Brassica rapa
BraA05t20492Z Brassica rapa
BraA08t35478Z Brassica rapa
BraA10t44218Z Brassica rapa
C03p09980 Brassica napus
C04p21220 Brassica napus
C08p02960 Brassica napus
C09p59060 Brassica napus
C09p59080 Brassica napus
CAN.G128.110 Capsicum annuum
CAN.G483.2 Capsicum annuum
CAN.G85.12 Capsicum annuum
CANSAT54G0486 Cannabis sativa
CANSAT78G2106 Cannabis sativa
CARHR122940 Cardamine hirsuta
CARHR195210 Cardamine hirsuta
Carub.0001s0663 Capsella rubella
Carub.0004s1071 Capsella rubella
Carub.0006s1612 Capsella rubella
Ca_03430_v3 Cicer arietinum L.
Ca_05585_v3 Cicer arietinum L.
Ca_14909_v3 Cicer arietinum L.
Cc00_g08730 Coffea canephora
Cc01_g13930 Coffea canephora
CDE08G0232 Ceratophyllum demersum
CDE09G0963 Ceratophyllum demersum
CDE09G1138 Ceratophyllum demersum
Cfa011652 Carpinus fangiana
Cfa019886 Carpinus fangiana
Ciclev10029861m.g Citrus clementina
Ciclev10030490m.g Citrus clementina
CiPaw.09G053000 Carya illinoinensis
CiPaw.10G044600 Carya illinoinensis
CiPaw.11G022800 Carya illinoinensis
CiPaw.13G080900 Carya illinoinensis
ClCG03G000910 Citrullus lanatus
ClCG04G004830 Citrullus lanatus
ClCG09G013260 Citrullus lanatus
COL.COLO4_19108 Corchorus olitorius
COL.COLO4_33471 Corchorus olitorius
Cpa.g.sc112.55 Carica papaya
Cpa.g.sc117.54 Carica papaya
Cpa.g.sc73.39 Carica papaya
CsaV3_1G036030 Cucumis sativus L.
CsaV3_4G031680 Cucumis sativus L.
CSS0001466 Camellia sinensis var. sinensis
CSS0028379 Camellia sinensis var. sinensis
CSS0037844 Camellia sinensis var. sinensis
CSS0044657 Camellia sinensis var. sinensis
DCAR_005896 Daucus carota
DCAR_013506 Daucus carota
DCAR_020635 Daucus carota
Dinv14553 Davidia involucrata
Dinv14554 Davidia involucrata
Dinv28616 Davidia involucrata
Dinv28617 Davidia involucrata
Dinv37045 Davidia involucrata
Duzib106G2027 Durio zibethinus
Duzib128G1239 Durio zibethinus
Duzib128G1312 Durio zibethinus
Duzib128G1593 Durio zibethinus
Duzib168G1408 Durio zibethinus
Duzib177G0589 Durio zibethinus
ECA236G4805 Erigeron canadensis
ECA247G0136 Erigeron canadensis
ECA247G0685 Erigeron canadensis
ECA248G0533 Erigeron canadensis
EL10Ac9g21403 Beta vulgaris
Eucgr.A02165 Eucalyptus grandis
FAN11G0187 Fragaria x ananassa
FAN15G1233 Fragaria x ananassa
FAN16G2282 Fragaria x ananassa
FAN19G0929 Fragaria x ananassa
FAN20G0782 Fragaria x ananassa
FAN21G2515 Fragaria x ananassa
FAN24G1358 Fragaria x ananassa
FAN25G0685 Fragaria x ananassa
FAN26G2169 Fragaria x ananassa
FAN27G2381 Fragaria x ananassa
FAN28G0247 Fragaria x ananassa
FvH4_1g29420 Fragaria vesca
FvH4_2g10091 Fragaria vesca
FvH4_2g10092 Fragaria vesca
FvH4_3g38180 Fragaria vesca
Glyma.02G225200 Glycine max
Glyma.03G004800 Glycine max
Glyma.14G192000 Glycine max
Glyma.18G065500 Glycine max
Glyma.19G121300 Glycine max
Gohir.A03G049200 Gossypium hirsutum
Gohir.A05G090000 Gossypium hirsutum
Gohir.A08G002050 Gossypium hirsutum
Gohir.A11G224214 Gossypium hirsutum
Gohir.A13G097000 Gossypium hirsutum
Gohir.A13G160000 Gossypium hirsutum
Gohir.D03G118000 Gossypium hirsutum
Gohir.D05G090900 Gossypium hirsutum
Gohir.D08G012750 Gossypium hirsutum
Gohir.D11G237400 Gossypium hirsutum
Gohir.D13G102100 Gossypium hirsutum
Gohir.D13G165200 Gossypium hirsutum
Gorai.003G124500 Gossypium raimondii
Gorai.004G006800 Gossypium raimondii
Gorai.007G250800 Gossypium raimondii
Gorai.009G093400 Gossypium raimondii
Gorai.013G114300 Gossypium raimondii
Gorai.013G197500 Gossypium raimondii
GSVIVG01029896001 Vitis vinifera
HanXRQChr00c0297g0573161 Helianthus annuus
HanXRQChr10g0293151 Helianthus annuus
HanXRQChr10g0300581 Helianthus annuus
HanXRQChr11g0337951 Helianthus annuus
Haze_20366 Corylus avellana
Haze_24256 Corylus avellana
Hma1.2p1_0165F.1_g073333 Hydrangea macrophylla
Hma1.2p1_1010F.1_g247400 Hydrangea macrophylla
Hma1.2p1_1291F.1_g273630 Hydrangea macrophylla
HPP92_005921 Vanilla planifolia
HPP92_005925 Vanilla planifolia
HPP92_008478 Vanilla planifolia
Hund15172 Selenicereus undatus
Hund18858 Selenicereus undatus
Lalb_Chr04g0252341 Lupinus albus
Lalb_Chr04g0252351 Lupinus albus
Lalb_Chr04g0252361 Lupinus albus
Lalb_Chr10g0103251 Lupinus albus
Lalb_Chr10g0103261 Lupinus albus
Lalb_Chr14g0365081 Lupinus albus
Lalb_Chr15g0082731 Lupinus albus
Lalb_Chr15g0082741 Lupinus albus
Lalb_Chr17g0344981 Lupinus albus
Lalb_Chr18g0050791 Lupinus albus
Lj1A141G50 Lonicera japonica
Lj1g0005282 Lotus japonicus
Lj1P1075T62 Lonicera japonica
Lj2P1077T57 Lonicera japonica
Lj6g0005224 Lotus japonicus
LjContig00155g0014668 Lotus japonicus
Lsat_1_v5_gn_8_85341 Lactuca sativa
Lsat_1_v5_gn_9_112680 Lactuca sativa
Lsat_1_v5_gn_9_26961 Lactuca sativa
Lsat_1_v5_gn_9_30121 Lactuca sativa
Manes.01G164500 Manihot esculenta
Manes.02G121900 Manihot esculenta
Manes.08G155700 Manihot esculenta
Manes.09G134400 Manihot esculenta
MBI13_g15011_MAGBIO Magnolia biondii
MBI19_g06602_MAGBIO Magnolia biondii
MD03G1075800 Malus domestica
MD05G1057800 Malus domestica
MD10G1065700 Malus domestica
MD11G1080500 Malus domestica
MD12G1015000 Malus domestica
MD14G1012900 Malus domestica
Medtr3g462910 Medicago truncatula
Medtr5g069750 Medicago truncatula
Medtr7g087490 Medicago truncatula
MELO3C008875.2 Cucumis melo
MELO3C020564.2 Cucumis melo
Migut.J01577 Erythranthe guttata
Migut.N00881 Erythranthe guttata
Migut.N01846 Erythranthe guttata
MSTRG.10764 Avicennia marina
MSTRG.19759 Avicennia marina
MSTRG.6275 Avicennia marina
Nitab4.5_0000062g0420 Nicotiana tabacum
Nitab4.5_0000102g0160 Nicotiana tabacum
Nitab4.5_0000123g0050 Nicotiana tabacum
Nitab4.5_0003808g0050 Nicotiana tabacum
Nitab4.5_0003808g0060 Nicotiana tabacum
Nitab4.5_0005500g0020 Nicotiana tabacum
Nitab4.5_0007999g0010 Nicotiana tabacum
Nn2g11384 Nelumbo nucifera
Nn7g38016 Nelumbo nucifera
Oeu023030.1 Olea europaea
Oeu044220.1 Olea europaea
Oeu049274.1 Olea europaea
Oeu060743.1 Olea europaea
Oeu060745.1 Olea europaea
Os01g0812050 Oryza sativa ssp. japonica
Os03g0862000 Oryza sativa ssp. japonica
Os05g0490400 Oryza sativa ssp. japonica
Os07g0472300 Oryza sativa ssp. japonica
Os11g0130800 Oryza sativa ssp. japonica
Os12g0127650 Oryza sativa ssp. japonica
Peaxi162Scf00003g05364 Petunia axillaris
Peaxi162Scf00153g01023 Petunia axillaris
Peaxi162Scf00216g00115 Petunia axillaris
PGR042G3731 Punica granatum
PGR119G2260 Punica granatum
PGSC0003DMG400004163 Solanum tuberosum
PGSC0003DMG400019177 Solanum tuberosum
PGSC0003DMG400028204 Solanum tuberosum
Phvul.001G101800 Phaseolus vulgaris
Phvul.006G065500 Phaseolus vulgaris
Phvul.008G262800 Phaseolus vulgaris
Potri.001G249000 Populus trichocarpa
Potri.009G043000 Populus trichocarpa
Potri.013G068800 Populus trichocarpa
Potri.019G044500 Populus trichocarpa
Prupe.6G060900 Prunus persica
Prupe.7G025700 Prunus persica
Prupe.8G087600 Prunus persica
Psat2g059400 Pisum sativum
Psat3g084320 Pisum sativum
Psat5g160800 Pisum sativum
PSO210G3936 Papaver somniferum
PSO210G7347 Papaver somniferum
PSO339G0059 Papaver somniferum
PSO339G2450 Papaver somniferum
PSO384G2823 Papaver somniferum
PSO532G0028 Papaver somniferum
PSO541G2770 Papaver somniferum
PSO801G0543 Papaver somniferum
QL01p026846 Quercus lobata
QL07p015943 Quercus lobata
RcHm_v2.0_Chr3g0495491 Rosa chinensis
RcHm_v2.0_Chr5g0068611 Rosa chinensis
RcHm_v2.0_Chr6g0267051 Rosa chinensis
Rhsim13G0072200 Rhododendron simsii
RhsimUnG0023200 Rhododendron simsii
Sabra16G0151100 Salix brachista
Sabra19G0054900 Salix brachista
SalBow1G2425 Salvia bowleyana
SalBow1G6156 Salvia bowleyana
SalBow6G5301 Salvia bowleyana
SalBow6G5969 Salvia bowleyana
Sc01g0007860 Simmondsia chinensis
Sc06g0008410 Simmondsia chinensis
Sc12g0000860 Simmondsia chinensis
Sc22g0002340 Simmondsia chinensis
Sed0005780 Sechium edule
Sed0008864 Sechium edule
Sed0026327 Sechium edule
SEGI_17680 Sequoiadendron giganteum
SGA_v2.0_scaffold120G32945 Striga asiatica
SGA_v2.0_scaffold240G44144 Striga asiatica
SGA_v2.0_scaffold66G22332 Striga asiatica
Solyc06g005960.4 Solanum lycopersicum
Solyc10g076650.3 Solanum lycopersicum
Solyc10g076995.1 Solanum lycopersicum
Solyc10g077000.3 Solanum lycopersicum
Solyc10g081200.1 Solanum lycopersicum
Sopen06g001930 Solanum pennellii
Sopen10g028260 Solanum pennellii
Sopen10g028680 Solanum pennellii
Sopen10g031700 Solanum pennellii
Sp4g12330 Schrenkiella parvula
Sp6g26360 Schrenkiella parvula
TAR369G0234 Trochodendron aralioides
TAR369G1119 Trochodendron aralioides
TAR623G1062 Trochodendron aralioides
THA.LOC104800720 Tarenaya hassleriana
THA.LOC104802888 Tarenaya hassleriana
THA.LOC104820809 Tarenaya hassleriana
THA.LOC104826297 Tarenaya hassleriana
Thecc.05G236600 Theobroma cacao
Thecc.09G305600 Theobroma cacao
Thhalv10009482m.g Eutrema salsugineum
Thhalv10012439m.g Eutrema salsugineum
Thhalv10017594m.g Eutrema salsugineum
TPR.G13293 Trifolium pratense
TPR.G23643 Trifolium pratense
TPR.G24037 Trifolium pratense
TWI31G1266 Tripterygium wilfordii
TWI32G1337 Tripterygium wilfordii
TWI34G0003 Tripterygium wilfordii
TWI75G0348 Tripterygium wilfordii
TWI79G1268 Tripterygium wilfordii
unitig_21.g20665 Utricularia gibba
unitig_22.g5220 Utricularia gibba
unitig_8.g3691 Utricularia gibba
unitig_8.g3692 Utricularia gibba
unitig_8.g3693 Utricularia gibba
vmacro07618 Vaccinium macrocarpon
VMungo0540G2490 Vigna mungo
VMungo0647G2111 Vigna mungo
VMungo1383G0089 Vigna mungo
VMungo1383G0221 Vigna mungo
Zm00001eb065350 Zea mays
Zm00001eb093510 Zea mays
Zm00001eb104840 Zea mays
Zm00001eb150100 Zea mays
Zm00001eb150130 Zea mays
Zm00001eb291270 Zea mays

User provided reference genes

Program Settings