Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002003', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '331', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A05p02080' => 'bna', 'A06p09540' => 'bna', 'A09p64250' => 'bna', 'Aa31LG3G830' => 'aar', 'Aa31LG3G880' => 'aar', 'Aa31LG5G8940' => 'aar', 'Aa31sc1418G10' => 'aar', 'Aa31sc1418G30' => 'aar', 'Actinidia06977' => 'ach', 'Actinidia17703' => 'ach', 'Actinidia24471' => 'ach', 'Actinidia38171' => 'ach', 'Ah.04g159690' => 'amhyb', 'Ah.13g076820' => 'amhyb', 'AL4G20060' => 'aly', 'AL4G27970' => 'aly', 'AL4G39140' => 'aly', 'Aqoxy1G00375' => 'aox', 'Aqoxy2G00433' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7CMH8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC671X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCA3CT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2062V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG9DVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6ISWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0A6F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0ISQJ' => 'arhy', 'AT2G26850' => 'ath', 'AT2G32560' => 'ath', 'AT2G41170' => 'ath', 'ATR0307G065' => 'atr', 'Atru.chr1.1395' => 'acertr', 'Atru.chr3.3003' => 'acertr', 'AUR62000211' => 'cqu', 'AUR62006557' => 'cqu', 'AUR62018356' => 'cqu', 'AUR62030306' => 'cqu', 'AUR62035454' => 'cqu', 'BcaC02g12757' => 'bca', 'BcaC02g12845' => 'bca', 'BcaC02g12846' => 'bca', 'BcaNung05630' => 'bca', 'BolC4t21892H' => 'bol', 'BolC5t29874H' => 'bol', 'BolC8t52324H' => 'bol', 'BraA05t19204Z' => 'bra', 'BraA06t24144Z' => 'bra', 'BraA09t41769Z' => 'bra', 'C04p02490' => 'bna', 'C04p68800' => 'bna', 'C04p68810' => 'bna', 'C08p47860' => 'bna', 'CAN.G468.7' => 'can', 'CAN.G960.62' => 'can', 'CANSAT54G0357' => 'cansat', 'CANSAT64G1506' => 'cansat', 'CARHR126420' => 'chi', 'CARHR136260' => 'chi', 'Carub.0004s0732' => 'cru', 'Carub.0004s1390' => 'cru', 'Carub.0004s2348' => 'cru', 'Ca_06191_v3' => 'car', 'Ca_08385_v3' => 'car', 'CBR_g19731' => 'cbr', 'CBR_g6621' => 'cbr', 'CBR_g89832' => 'cbr', 'Cc01_g06240' => 'ccan', 'Cc06_g19620' => 'ccan', 'CDE02G1132' => 'cde', 'CDE04G0535' => 'cde', 'CDE08G0103' => 'cde', 'Cfa009896' => 'cfa', 'Cfa019997' => 'cfa', 'Ciclev10011910m.g' => 'ccl', 'Ciclev10015455m.g' => 'ccl', 'CiPaw.09G048600' => 'cil', 'CiPaw.10G040600' => 'cil', 'CiPaw.13G148800' => 'cil', 'CiPaw.14G111200' => 'cil', 'ClCG02G022740' => 'cla', 'ClCG10G013640' => 'cla', 'COL.COLO4_07337' => 'col', 'COL.COLO4_37459' => 'col', 'Cpa.g.sc34.181' => 'cpa', 'Cpa.g.sc92.88' => 'cpa', 'CsaV3_3G043010' => 'csa', 'CsaV3_6G038860' => 'csa', 'CSS0013608' => 'camsi', 'CSS0027882' => 'camsi', 'CSS0048089' => 'camsi', 'DCAR_002097' => 'dca', 'DCAR_013645' => 'dca', 'DCAR_016883' => 'dca', 'DCAR_020578' => 'dca', 'Dinv01679' => 'din', 'Dinv03207' => 'din', 'Dinv04577' => 'din', 'Dinv05307' => 'din', 'Dinv36153' => 'din', 'Duzib093G0829' => 'dzi', 'Duzib106G1914' => 'dzi', 'Duzib150G0616' => 'dzi', 'Duzib168G1203' => 'dzi', 'Duzib170G0954' => 'dzi', 'ECA233G2074' => 'eca', 'ECA238G1916' => 'eca', 'ECA248G0456' => 'eca', 'EL10Ac2g03500' => 'bvu', 'EL10Ac3g07248' => 'bvu', 'EL10Ac4g10097' => 'bvu', 'EL10Ac9g20681' => 'bvu', 'EL10Ac9g20682' => 'bvu', 'EL10Ac9g22559' => 'bvu', 'Eucgr.A02233' => 'egr', 'Eucgr.B03749' => 'egr', 'Eucgr.J00678' => 'egr', 'FAN11G1523' => 'fan', 'FAN15G1480' => 'fan', 'FAN16G1765' => 'fan', 'FAN20G0911' => 'fan', 'FAN21G0459' => 'fan', 'FAN24G2135' => 'fan', 'FAN25G0532' => 'fan', 'FAN25G3536' => 'fan', 'FvH4_2g14090' => 'fve', 'FvH4_3g27720' => 'fve', 'Glyma.02G278300' => 'gma', 'Glyma.03G126600' => 'gma', 'Glyma.03G126700' => 'gma', 'Glyma.03G126800' => 'gma', 'Glyma.03G126900' => 'gma', 'Glyma.07G235500' => 'gma', 'Glyma.10G102300' => 'gma', 'Glyma.14G036300' => 'gma', 'Glyma.19G129600' => 'gma', 'Glyma.20G042200' => 'gma', 'Gohir.A05G073700' => 'ghi', 'Gohir.A09G110920' => 'ghi', 'Gohir.A11G306900' => 'ghi', 'Gohir.D05G076600' => 'ghi', 'Gohir.D09G107500' => 'ghi', 'Gohir.D11G322400' => 'ghi', 'Gorai.006G125100' => 'gra', 'Gorai.007G352500' => 'gra', 'Gorai.009G077900' => 'gra', 'GSVIVG01025740001' => 'vvi', 'GSVIVG01037337001' => 'vvi', 'HanXRQChr01g0008111' => 'han', 'HanXRQChr12g0380441' => 'han', 'HanXRQChr13g0388181' => 'han', 'HanXRQChr14g0432271' => 'han', 'Haze_20236' => 'cav', 'Haze_23258' => 'cav', 'Hma1.2p1_0252F.1_g102790' => 'hma', 'Hma1.2p1_0460F.1_g157560' => 'hma', 'HPP92_001028' => 'vpl', 'HPP92_013905' => 'vpl', 'HPP92_013906' => 'vpl', 'HPP92_018979' => 'vpl', 'HPP92_019777' => 'vpl', 'Hund07425' => 'sun', 'Hund19088' => 'sun', 'Hund21964' => 'sun', 'Lalb_Chr04g0249291' => 'lal', 'Lalb_Chr10g0106151' => 'lal', 'Lalb_Chr17g0347781' => 'lal', 'Lalb_Chr17g0347811' => 'lal', 'Lalb_Chr17g0347821' => 'lal', 'Lalb_Chr22g0357521' => 'lal', 'Lj1C318T0' => 'lonja', 'Lj1g0000041' => 'lja', 'Lj1g0001568' => 'lja', 'Lj1g0002475' => 'lja', 'Lj1g0004628' => 'lja', 'Lj1g0006789' => 'lja', 'Lj1g0014198' => 'lja', 'Lj1g0014794' => 'lja', 'Lj1g0021192' => 'lja', 'Lj1g0024236' => 'lja', 'Lj2A401T9' => 'lonja', 'Lj3g0024240' => 'lja', 'Lj6g0015131' => 'lja', 'LjContig00564g0015742' => 'lja', 'Lsat_1_v5_gn_2_32541' => 'lsa', 'Lsat_1_v5_gn_5_157480' => 'lsa', 'Lsat_1_v5_gn_5_63140' => 'lsa', 'Manes.02G136800' => 'mes', 'Manes.09G003900' => 'mes', 'Mapoly0086s0017' => 'mpo', 'MBI13_g09218_MAGBIO' => 'mbi', 'MBI19_g44709_MAGBIO' => 'mbi', 'MD03G1164600' => 'mdo', 'MD11G1183200' => 'mdo', 'MD12G1096100' => 'mdo', 'MD14G1089800' => 'mdo', 'Medtr1030s0010' => 'mtr', 'Medtr3g436860' => 'mtr', 'Medtr5g089110' => 'mtr', 'Medtr6g039460' => 'mtr', 'Medtr6g039470' => 'mtr', 'Medtr7g089560' => 'mtr', 'Medtr7g089640' => 'mtr', 'Medtr7g089670' => 'mtr', 'Medtr7g089700' => 'mtr', 'Medtr7g089720' => 'mtr', 'Medtr7g089730' => 'mtr', 'MELO3C014551.2' => 'cme', 'MELO3C026603.2' => 'cme', 'Migut.D00674' => 'egut', 'Migut.J01645' => 'egut', 'Migut.N02379' => 'egut', 'MSTRG.10789' => 'ama', 'MSTRG.17637' => 'ama', 'MSTRG.19797' => 'ama', 'Nitab4.5_0000812g0070' => 'nta', 'Nitab4.5_0004588g0020' => 'nta', 'Nitab4.5_0006764g0010' => 'nta', 'Nitab4.5_0007012g0010' => 'nta', 'Nn2g14674' => 'nnu', 'Nn7g36810' => 'nnu', 'Oeu005203.2' => 'oeu', 'Oeu012573.1' => 'oeu', 'Oeu012574.1' => 'oeu', 'Oeu025911.1' => 'oeu', 'Oeu045936.1' => 'oeu', 'Oeu049270.1' => 'oeu', 'Oeu061122.1' => 'oeu', 'Oeu061698.1' => 'oeu', 'Os01g0281000' => 'osa', 'Os01g0806200' => 'osa', 'Peaxi162Scf00003g04918' => 'pax', 'Peaxi162Scf00004g04217' => 'pax', 'Peaxi162Scf00076g00331' => 'pax', 'PGR031G3449' => 'pgr', 'PGR102G1201' => 'pgr', 'PGR119G0755' => 'pgr', 'PGSC0003DMG400008362' => 'stu', 'PGSC0003DMG400009456' => 'stu', 'Phvul.001G121900' => 'pvu', 'Phvul.001G122000' => 'pvu', 'Phvul.001G122200' => 'pvu', 'Phvul.001G122300' => 'pvu', 'Phvul.001G122600' => 'pvu', 'Phvul.006G015900' => 'pvu', 'Phvul.007G244750' => 'pvu', 'Phvul.007G244800' => 'pvu', 'Phvul.008G202600' => 'pvu', 'Potri.001G273900' => 'ptr', 'Potri.006G040000' => 'ptr', 'Potri.009G068100' => 'ptr', 'Potri.016G035900' => 'ptr', 'Pp3c16_6980' => 'ppa', 'Pp3c25_580' => 'ppa', 'Pp3c6_13990' => 'ppa', 'Prupe.4G262500' => 'ppe', 'Prupe.7G034300' => 'ppe', 'Psat0s1289g0040' => 'psa', 'Psat0s6556g0040' => 'psa', 'Psat3g079680' => 'psa', 'Psat5g191200' => 'psa', 'Psat6g016520' => 'psa', 'PSO339G0835' => 'pso', 'PSO384G1060' => 'pso', 'QL01p016690' => 'qlo', 'QL07p010669' => 'qlo', 'QL07p011228' => 'qlo', 'RcHm_v2.0_Chr5g0050291' => 'rch', 'RcHm_v2.0_Chr6g0276171' => 'rch', 'Rhsim04G0112100' => 'rsi', 'Rhsim13G0206400' => 'rsi', 'Sabra06G0027000' => 'sbr', 'Sabra09G0051200' => 'sbr', 'Sabra16G0038100' => 'sbr', 'Sabra16G0168700' => 'sbr', 'SalBow3G0287' => 'sbo', 'SalBow6G4571' => 'sbo', 'SalBow6G5777' => 'sbo', 'Sc09g0001110' => 'sci', 'Sc13g0001080' => 'sci', 'Sed0005786' => 'sed', 'Sed0006291' => 'sed', 'Sed0015456' => 'sed', 'Sed0024245' => 'sed', 'Sed0027856' => 'sed', 'SEGI_01596' => 'sgi', 'SEGI_03578' => 'sgi', 'SEGI_09649' => 'sgi', 'SEGI_11242' => 'sgi', 'SEGI_13233' => 'sgi', 'SEGI_36644' => 'sgi', 'SEGI_38379' => 'sgi', 'SEGI_38657' => 'sgi', 'SGA_v2.0_scaffold26G11419' => 'sas', 'SGA_v2.0_scaffold8G04538' => 'sas', 'SMO119G0018' => 'smo', 'SMO340G0112' => 'smo', 'Solyc10g078410.2' => 'sly', 'Solyc11g065000.2' => 'sly', 'Sopen10g029070' => 'spe', 'Sopen11g024770' => 'spe', 'Sp1g10550' => 'spa', 'Sp4g23470' => 'spa', 'TAR623G0157' => 'tar', 'TAR633G2255' => 'tar', 'THA.LOC104824398' => 'tha', 'THA.LOC104826456' => 'tha', 'Thecc.05G128500' => 'tca', 'Thecc.09G246400' => 'tca', 'Thhalv10007953m.g' => 'esa', 'Thhalv10016802m.g' => 'esa', 'TPR.G16082' => 'tpr', 'TPR.G16091' => 'tpr', 'TPR.G16416' => 'tpr', 'TPR.G24388' => 'tpr', 'TPR.G34636' => 'tpr', 'TPR.G40411' => 'tpr', 'TWI31G0759' => 'twi', 'TWI53G0375' => 'twi', 'TWI75G0745' => 'twi', 'unitig_0.g602' => 'ugi', 'unitig_90.g27490' => 'ugi', 'vmacro04044' => 'vma', 'VMungo0540G0761' => 'vmu', 'VMungo0647G0496' => 'vmu', 'VMungo0720G0011' => 'vmu', 'VMungo0720G3112' => 'vmu', 'VMungo1383G0305' => 'vmu', 'VMungo1383G0818' => 'vmu', 'VMungo1383G1429' => 'vmu', 'Zm00001eb129100' => 'zma', 'Zm00001eb150400' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002003', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002003' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002003', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '331', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002003' ) ), 'genes' => array( 'A05p02080' => 'bna', 'A06p09540' => 'bna', 'A09p64250' => 'bna', 'Aa31LG3G830' => 'aar', 'Aa31LG3G880' => 'aar', 'Aa31LG5G8940' => 'aar', 'Aa31sc1418G10' => 'aar', 'Aa31sc1418G30' => 'aar', 'Actinidia06977' => 'ach', 'Actinidia17703' => 'ach', 'Actinidia24471' => 'ach', 'Actinidia38171' => 'ach', 'Ah.04g159690' => 'amhyb', 'Ah.13g076820' => 'amhyb', 'AL4G20060' => 'aly', 'AL4G27970' => 'aly', 'AL4G39140' => 'aly', 'Aqoxy1G00375' => 'aox', 'Aqoxy2G00433' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7CMH8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC671X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCA3CT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2062V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG9DVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6ISWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0A6F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0ISQJ' => 'arhy', 'AT2G26850' => 'ath', 'AT2G32560' => 'ath', 'AT2G41170' => 'ath', 'ATR0307G065' => 'atr', 'Atru.chr1.1395' => 'acertr', 'Atru.chr3.3003' => 'acertr', 'AUR62000211' => 'cqu', 'AUR62006557' => 'cqu', 'AUR62018356' => 'cqu', 'AUR62030306' => 'cqu', 'AUR62035454' => 'cqu', 'BcaC02g12757' => 'bca', 'BcaC02g12845' => 'bca', 'BcaC02g12846' => 'bca', 'BcaNung05630' => 'bca', 'BolC4t21892H' => 'bol', 'BolC5t29874H' => 'bol', 'BolC8t52324H' => 'bol', 'BraA05t19204Z' => 'bra', 'BraA06t24144Z' => 'bra', 'BraA09t41769Z' => 'bra', 'C04p02490' => 'bna', 'C04p68800' => 'bna', 'C04p68810' => 'bna', 'C08p47860' => 'bna', 'CAN.G468.7' => 'can', 'CAN.G960.62' => 'can', 'CANSAT54G0357' => 'cansat', 'CANSAT64G1506' => 'cansat', 'CARHR126420' => 'chi', 'CARHR136260' => 'chi', 'Carub.0004s0732' => 'cru', 'Carub.0004s1390' => 'cru', 'Carub.0004s2348' => 'cru', 'Ca_06191_v3' => 'car', 'Ca_08385_v3' => 'car', 'CBR_g19731' => 'cbr', 'CBR_g6621' => 'cbr', 'CBR_g89832' => 'cbr', 'Cc01_g06240' => 'ccan', 'Cc06_g19620' => 'ccan', 'CDE02G1132' => 'cde', 'CDE04G0535' => 'cde', 'CDE08G0103' => 'cde', 'Cfa009896' => 'cfa', 'Cfa019997' => 'cfa', 'Ciclev10011910m.g' => 'ccl', 'Ciclev10015455m.g' => 'ccl', 'CiPaw.09G048600' => 'cil', 'CiPaw.10G040600' => 'cil', 'CiPaw.13G148800' => 'cil', 'CiPaw.14G111200' => 'cil', 'ClCG02G022740' => 'cla', 'ClCG10G013640' => 'cla', 'COL.COLO4_07337' => 'col', 'COL.COLO4_37459' => 'col', 'Cpa.g.sc34.181' => 'cpa', 'Cpa.g.sc92.88' => 'cpa', 'CsaV3_3G043010' => 'csa', 'CsaV3_6G038860' => 'csa', 'CSS0013608' => 'camsi', 'CSS0027882' => 'camsi', 'CSS0048089' => 'camsi', 'DCAR_002097' => 'dca', 'DCAR_013645' => 'dca', 'DCAR_016883' => 'dca', 'DCAR_020578' => 'dca', 'Dinv01679' => 'din', 'Dinv03207' => 'din', 'Dinv04577' => 'din', 'Dinv05307' => 'din', 'Dinv36153' => 'din', 'Duzib093G0829' => 'dzi', 'Duzib106G1914' => 'dzi', 'Duzib150G0616' => 'dzi', 'Duzib168G1203' => 'dzi', 'Duzib170G0954' => 'dzi', 'ECA233G2074' => 'eca', 'ECA238G1916' => 'eca', 'ECA248G0456' => 'eca', 'EL10Ac2g03500' => 'bvu', 'EL10Ac3g07248' => 'bvu', 'EL10Ac4g10097' => 'bvu', 'EL10Ac9g20681' => 'bvu', 'EL10Ac9g20682' => 'bvu', 'EL10Ac9g22559' => 'bvu', 'Eucgr.A02233' => 'egr', 'Eucgr.B03749' => 'egr', 'Eucgr.J00678' => 'egr', 'FAN11G1523' => 'fan', 'FAN15G1480' => 'fan', 'FAN16G1765' => 'fan', 'FAN20G0911' => 'fan', 'FAN21G0459' => 'fan', 'FAN24G2135' => 'fan', 'FAN25G0532' => 'fan', 'FAN25G3536' => 'fan', 'FvH4_2g14090' => 'fve', 'FvH4_3g27720' => 'fve', 'Glyma.02G278300' => 'gma', 'Glyma.03G126600' => 'gma', 'Glyma.03G126700' => 'gma', 'Glyma.03G126800' => 'gma', 'Glyma.03G126900' => 'gma', 'Glyma.07G235500' => 'gma', 'Glyma.10G102300' => 'gma', 'Glyma.14G036300' => 'gma', 'Glyma.19G129600' => 'gma', 'Glyma.20G042200' => 'gma', 'Gohir.A05G073700' => 'ghi', 'Gohir.A09G110920' => 'ghi', 'Gohir.A11G306900' => 'ghi', 'Gohir.D05G076600' => 'ghi', 'Gohir.D09G107500' => 'ghi', 'Gohir.D11G322400' => 'ghi', 'Gorai.006G125100' => 'gra', 'Gorai.007G352500' => 'gra', 'Gorai.009G077900' => 'gra', 'GSVIVG01025740001' => 'vvi', 'GSVIVG01037337001' => 'vvi', 'HanXRQChr01g0008111' => 'han', 'HanXRQChr12g0380441' => 'han', 'HanXRQChr13g0388181' => 'han', 'HanXRQChr14g0432271' => 'han', 'Haze_20236' => 'cav', 'Haze_23258' => 'cav', 'Hma1.2p1_0252F.1_g102790' => 'hma', 'Hma1.2p1_0460F.1_g157560' => 'hma', 'HPP92_001028' => 'vpl', 'HPP92_013905' => 'vpl', 'HPP92_013906' => 'vpl', 'HPP92_018979' => 'vpl', 'HPP92_019777' => 'vpl', 'Hund07425' => 'sun', 'Hund19088' => 'sun', 'Hund21964' => 'sun', 'Lalb_Chr04g0249291' => 'lal', 'Lalb_Chr10g0106151' => 'lal', 'Lalb_Chr17g0347781' => 'lal', 'Lalb_Chr17g0347811' => 'lal', 'Lalb_Chr17g0347821' => 'lal', 'Lalb_Chr22g0357521' => 'lal', 'Lj1C318T0' => 'lonja', 'Lj1g0000041' => 'lja', 'Lj1g0001568' => 'lja', 'Lj1g0002475' => 'lja', 'Lj1g0004628' => 'lja', 'Lj1g0006789' => 'lja', 'Lj1g0014198' => 'lja', 'Lj1g0014794' => 'lja', 'Lj1g0021192' => 'lja', 'Lj1g0024236' => 'lja', 'Lj2A401T9' => 'lonja', 'Lj3g0024240' => 'lja', 'Lj6g0015131' => 'lja', 'LjContig00564g0015742' => 'lja', 'Lsat_1_v5_gn_2_32541' => 'lsa', 'Lsat_1_v5_gn_5_157480' => 'lsa', 'Lsat_1_v5_gn_5_63140' => 'lsa', 'Manes.02G136800' => 'mes', 'Manes.09G003900' => 'mes', 'Mapoly0086s0017' => 'mpo', 'MBI13_g09218_MAGBIO' => 'mbi', 'MBI19_g44709_MAGBIO' => 'mbi', 'MD03G1164600' => 'mdo', 'MD11G1183200' => 'mdo', 'MD12G1096100' => 'mdo', 'MD14G1089800' => 'mdo', 'Medtr1030s0010' => 'mtr', 'Medtr3g436860' => 'mtr', 'Medtr5g089110' => 'mtr', 'Medtr6g039460' => 'mtr', 'Medtr6g039470' => 'mtr', 'Medtr7g089560' => 'mtr', 'Medtr7g089640' => 'mtr', 'Medtr7g089670' => 'mtr', 'Medtr7g089700' => 'mtr', 'Medtr7g089720' => 'mtr', 'Medtr7g089730' => 'mtr', 'MELO3C014551.2' => 'cme', 'MELO3C026603.2' => 'cme', 'Migut.D00674' => 'egut', 'Migut.J01645' => 'egut', 'Migut.N02379' => 'egut', 'MSTRG.10789' => 'ama', 'MSTRG.17637' => 'ama', 'MSTRG.19797' => 'ama', 'Nitab4.5_0000812g0070' => 'nta', 'Nitab4.5_0004588g0020' => 'nta', 'Nitab4.5_0006764g0010' => 'nta', 'Nitab4.5_0007012g0010' => 'nta', 'Nn2g14674' => 'nnu', 'Nn7g36810' => 'nnu', 'Oeu005203.2' => 'oeu', 'Oeu012573.1' => 'oeu', 'Oeu012574.1' => 'oeu', 'Oeu025911.1' => 'oeu', 'Oeu045936.1' => 'oeu', 'Oeu049270.1' => 'oeu', 'Oeu061122.1' => 'oeu', 'Oeu061698.1' => 'oeu', 'Os01g0281000' => 'osa', 'Os01g0806200' => 'osa', 'Peaxi162Scf00003g04918' => 'pax', 'Peaxi162Scf00004g04217' => 'pax', 'Peaxi162Scf00076g00331' => 'pax', 'PGR031G3449' => 'pgr', 'PGR102G1201' => 'pgr', 'PGR119G0755' => 'pgr', 'PGSC0003DMG400008362' => 'stu', 'PGSC0003DMG400009456' => 'stu', 'Phvul.001G121900' => 'pvu', 'Phvul.001G122000' => 'pvu', 'Phvul.001G122200' => 'pvu', 'Phvul.001G122300' => 'pvu', 'Phvul.001G122600' => 'pvu', 'Phvul.006G015900' => 'pvu', 'Phvul.007G244750' => 'pvu', 'Phvul.007G244800' => 'pvu', 'Phvul.008G202600' => 'pvu', 'Potri.001G273900' => 'ptr', 'Potri.006G040000' => 'ptr', 'Potri.009G068100' => 'ptr', 'Potri.016G035900' => 'ptr', 'Pp3c16_6980' => 'ppa', 'Pp3c25_580' => 'ppa', 'Pp3c6_13990' => 'ppa', 'Prupe.4G262500' => 'ppe', 'Prupe.7G034300' => 'ppe', 'Psat0s1289g0040' => 'psa', 'Psat0s6556g0040' => 'psa', 'Psat3g079680' => 'psa', 'Psat5g191200' => 'psa', 'Psat6g016520' => 'psa', 'PSO339G0835' => 'pso', 'PSO384G1060' => 'pso', 'QL01p016690' => 'qlo', 'QL07p010669' => 'qlo', 'QL07p011228' => 'qlo', 'RcHm_v2.0_Chr5g0050291' => 'rch', 'RcHm_v2.0_Chr6g0276171' => 'rch', 'Rhsim04G0112100' => 'rsi', 'Rhsim13G0206400' => 'rsi', 'Sabra06G0027000' => 'sbr', 'Sabra09G0051200' => 'sbr', 'Sabra16G0038100' => 'sbr', 'Sabra16G0168700' => 'sbr', 'SalBow3G0287' => 'sbo', 'SalBow6G4571' => 'sbo', 'SalBow6G5777' => 'sbo', 'Sc09g0001110' => 'sci', 'Sc13g0001080' => 'sci', 'Sed0005786' => 'sed', 'Sed0006291' => 'sed', 'Sed0015456' => 'sed', 'Sed0024245' => 'sed', 'Sed0027856' => 'sed', 'SEGI_01596' => 'sgi', 'SEGI_03578' => 'sgi', 'SEGI_09649' => 'sgi', 'SEGI_11242' => 'sgi', 'SEGI_13233' => 'sgi', 'SEGI_36644' => 'sgi', 'SEGI_38379' => 'sgi', 'SEGI_38657' => 'sgi', 'SGA_v2.0_scaffold26G11419' => 'sas', 'SGA_v2.0_scaffold8G04538' => 'sas', 'SMO119G0018' => 'smo', 'SMO340G0112' => 'smo', 'Solyc10g078410.2' => 'sly', 'Solyc11g065000.2' => 'sly', 'Sopen10g029070' => 'spe', 'Sopen11g024770' => 'spe', 'Sp1g10550' => 'spa', 'Sp4g23470' => 'spa', 'TAR623G0157' => 'tar', 'TAR633G2255' => 'tar', 'THA.LOC104824398' => 'tha', 'THA.LOC104826456' => 'tha', 'Thecc.05G128500' => 'tca', 'Thecc.09G246400' => 'tca', 'Thhalv10007953m.g' => 'esa', 'Thhalv10016802m.g' => 'esa', 'TPR.G16082' => 'tpr', 'TPR.G16091' => 'tpr', 'TPR.G16416' => 'tpr', 'TPR.G24388' => 'tpr', 'TPR.G34636' => 'tpr', 'TPR.G40411' => 'tpr', 'TWI31G0759' => 'twi', 'TWI53G0375' => 'twi', 'TWI75G0745' => 'twi', 'unitig_0.g602' => 'ugi', 'unitig_90.g27490' => 'ugi', 'vmacro04044' => 'vma', 'VMungo0540G0761' => 'vmu', 'VMungo0647G0496' => 'vmu', 'VMungo0720G0011' => 'vmu', 'VMungo0720G3112' => 'vmu', 'VMungo1383G0305' => 'vmu', 'VMungo1383G0818' => 'vmu', 'VMungo1383G1429' => 'vmu', 'Zm00001eb129100' => 'zma', 'Zm00001eb150400' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002003' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002003' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002003' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002003' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002003', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '331', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A05p02080' => 'bna', 'A06p09540' => 'bna', 'A09p64250' => 'bna', 'Aa31LG3G830' => 'aar', 'Aa31LG3G880' => 'aar', 'Aa31LG5G8940' => 'aar', 'Aa31sc1418G10' => 'aar', 'Aa31sc1418G30' => 'aar', 'Actinidia06977' => 'ach', 'Actinidia17703' => 'ach', 'Actinidia24471' => 'ach', 'Actinidia38171' => 'ach', 'Ah.04g159690' => 'amhyb', 'Ah.13g076820' => 'amhyb', 'AL4G20060' => 'aly', 'AL4G27970' => 'aly', 'AL4G39140' => 'aly', 'Aqoxy1G00375' => 'aox', 'Aqoxy2G00433' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7CMH8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC671X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCA3CT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2062V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG9DVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6ISWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0A6F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0ISQJ' => 'arhy', 'AT2G26850' => 'ath', 'AT2G32560' => 'ath', 'AT2G41170' => 'ath', 'ATR0307G065' => 'atr', 'Atru.chr1.1395' => 'acertr', 'Atru.chr3.3003' => 'acertr', 'AUR62000211' => 'cqu', 'AUR62006557' => 'cqu', 'AUR62018356' => 'cqu', 'AUR62030306' => 'cqu', 'AUR62035454' => 'cqu', 'BcaC02g12757' => 'bca', 'BcaC02g12845' => 'bca', 'BcaC02g12846' => 'bca', 'BcaNung05630' => 'bca', 'BolC4t21892H' => 'bol', 'BolC5t29874H' => 'bol', 'BolC8t52324H' => 'bol', 'BraA05t19204Z' => 'bra', 'BraA06t24144Z' => 'bra', 'BraA09t41769Z' => 'bra', 'C04p02490' => 'bna', 'C04p68800' => 'bna', 'C04p68810' => 'bna', 'C08p47860' => 'bna', 'CAN.G468.7' => 'can', 'CAN.G960.62' => 'can', 'CANSAT54G0357' => 'cansat', 'CANSAT64G1506' => 'cansat', 'CARHR126420' => 'chi', 'CARHR136260' => 'chi', 'Carub.0004s0732' => 'cru', 'Carub.0004s1390' => 'cru', 'Carub.0004s2348' => 'cru', 'Ca_06191_v3' => 'car', 'Ca_08385_v3' => 'car', 'CBR_g19731' => 'cbr', 'CBR_g6621' => 'cbr', 'CBR_g89832' => 'cbr', 'Cc01_g06240' => 'ccan', 'Cc06_g19620' => 'ccan', 'CDE02G1132' => 'cde', 'CDE04G0535' => 'cde', 'CDE08G0103' => 'cde', 'Cfa009896' => 'cfa', 'Cfa019997' => 'cfa', 'Ciclev10011910m.g' => 'ccl', 'Ciclev10015455m.g' => 'ccl', 'CiPaw.09G048600' => 'cil', 'CiPaw.10G040600' => 'cil', 'CiPaw.13G148800' => 'cil', 'CiPaw.14G111200' => 'cil', 'ClCG02G022740' => 'cla', 'ClCG10G013640' => 'cla', 'COL.COLO4_07337' => 'col', 'COL.COLO4_37459' => 'col', 'Cpa.g.sc34.181' => 'cpa', 'Cpa.g.sc92.88' => 'cpa', 'CsaV3_3G043010' => 'csa', 'CsaV3_6G038860' => 'csa', 'CSS0013608' => 'camsi', 'CSS0027882' => 'camsi', 'CSS0048089' => 'camsi', 'DCAR_002097' => 'dca', 'DCAR_013645' => 'dca', 'DCAR_016883' => 'dca', 'DCAR_020578' => 'dca', 'Dinv01679' => 'din', 'Dinv03207' => 'din', 'Dinv04577' => 'din', 'Dinv05307' => 'din', 'Dinv36153' => 'din', 'Duzib093G0829' => 'dzi', 'Duzib106G1914' => 'dzi', 'Duzib150G0616' => 'dzi', 'Duzib168G1203' => 'dzi', 'Duzib170G0954' => 'dzi', 'ECA233G2074' => 'eca', 'ECA238G1916' => 'eca', 'ECA248G0456' => 'eca', 'EL10Ac2g03500' => 'bvu', 'EL10Ac3g07248' => 'bvu', 'EL10Ac4g10097' => 'bvu', 'EL10Ac9g20681' => 'bvu', 'EL10Ac9g20682' => 'bvu', 'EL10Ac9g22559' => 'bvu', 'Eucgr.A02233' => 'egr', 'Eucgr.B03749' => 'egr', 'Eucgr.J00678' => 'egr', 'FAN11G1523' => 'fan', 'FAN15G1480' => 'fan', 'FAN16G1765' => 'fan', 'FAN20G0911' => 'fan', 'FAN21G0459' => 'fan', 'FAN24G2135' => 'fan', 'FAN25G0532' => 'fan', 'FAN25G3536' => 'fan', 'FvH4_2g14090' => 'fve', 'FvH4_3g27720' => 'fve', 'Glyma.02G278300' => 'gma', 'Glyma.03G126600' => 'gma', 'Glyma.03G126700' => 'gma', 'Glyma.03G126800' => 'gma', 'Glyma.03G126900' => 'gma', 'Glyma.07G235500' => 'gma', 'Glyma.10G102300' => 'gma', 'Glyma.14G036300' => 'gma', 'Glyma.19G129600' => 'gma', 'Glyma.20G042200' => 'gma', 'Gohir.A05G073700' => 'ghi', 'Gohir.A09G110920' => 'ghi', 'Gohir.A11G306900' => 'ghi', 'Gohir.D05G076600' => 'ghi', 'Gohir.D09G107500' => 'ghi', 'Gohir.D11G322400' => 'ghi', 'Gorai.006G125100' => 'gra', 'Gorai.007G352500' => 'gra', 'Gorai.009G077900' => 'gra', 'GSVIVG01025740001' => 'vvi', 'GSVIVG01037337001' => 'vvi', 'HanXRQChr01g0008111' => 'han', 'HanXRQChr12g0380441' => 'han', 'HanXRQChr13g0388181' => 'han', 'HanXRQChr14g0432271' => 'han', 'Haze_20236' => 'cav', 'Haze_23258' => 'cav', 'Hma1.2p1_0252F.1_g102790' => 'hma', 'Hma1.2p1_0460F.1_g157560' => 'hma', 'HPP92_001028' => 'vpl', 'HPP92_013905' => 'vpl', 'HPP92_013906' => 'vpl', 'HPP92_018979' => 'vpl', 'HPP92_019777' => 'vpl', 'Hund07425' => 'sun', 'Hund19088' => 'sun', 'Hund21964' => 'sun', 'Lalb_Chr04g0249291' => 'lal', 'Lalb_Chr10g0106151' => 'lal', 'Lalb_Chr17g0347781' => 'lal', 'Lalb_Chr17g0347811' => 'lal', 'Lalb_Chr17g0347821' => 'lal', 'Lalb_Chr22g0357521' => 'lal', 'Lj1C318T0' => 'lonja', 'Lj1g0000041' => 'lja', 'Lj1g0001568' => 'lja', 'Lj1g0002475' => 'lja', 'Lj1g0004628' => 'lja', 'Lj1g0006789' => 'lja', 'Lj1g0014198' => 'lja', 'Lj1g0014794' => 'lja', 'Lj1g0021192' => 'lja', 'Lj1g0024236' => 'lja', 'Lj2A401T9' => 'lonja', 'Lj3g0024240' => 'lja', 'Lj6g0015131' => 'lja', 'LjContig00564g0015742' => 'lja', 'Lsat_1_v5_gn_2_32541' => 'lsa', 'Lsat_1_v5_gn_5_157480' => 'lsa', 'Lsat_1_v5_gn_5_63140' => 'lsa', 'Manes.02G136800' => 'mes', 'Manes.09G003900' => 'mes', 'Mapoly0086s0017' => 'mpo', 'MBI13_g09218_MAGBIO' => 'mbi', 'MBI19_g44709_MAGBIO' => 'mbi', 'MD03G1164600' => 'mdo', 'MD11G1183200' => 'mdo', 'MD12G1096100' => 'mdo', 'MD14G1089800' => 'mdo', 'Medtr1030s0010' => 'mtr', 'Medtr3g436860' => 'mtr', 'Medtr5g089110' => 'mtr', 'Medtr6g039460' => 'mtr', 'Medtr6g039470' => 'mtr', 'Medtr7g089560' => 'mtr', 'Medtr7g089640' => 'mtr', 'Medtr7g089670' => 'mtr', 'Medtr7g089700' => 'mtr', 'Medtr7g089720' => 'mtr', 'Medtr7g089730' => 'mtr', 'MELO3C014551.2' => 'cme', 'MELO3C026603.2' => 'cme', 'Migut.D00674' => 'egut', 'Migut.J01645' => 'egut', 'Migut.N02379' => 'egut', 'MSTRG.10789' => 'ama', 'MSTRG.17637' => 'ama', 'MSTRG.19797' => 'ama', 'Nitab4.5_0000812g0070' => 'nta', 'Nitab4.5_0004588g0020' => 'nta', 'Nitab4.5_0006764g0010' => 'nta', 'Nitab4.5_0007012g0010' => 'nta', 'Nn2g14674' => 'nnu', 'Nn7g36810' => 'nnu', 'Oeu005203.2' => 'oeu', 'Oeu012573.1' => 'oeu', 'Oeu012574.1' => 'oeu', 'Oeu025911.1' => 'oeu', 'Oeu045936.1' => 'oeu', 'Oeu049270.1' => 'oeu', 'Oeu061122.1' => 'oeu', 'Oeu061698.1' => 'oeu', 'Os01g0281000' => 'osa', 'Os01g0806200' => 'osa', 'Peaxi162Scf00003g04918' => 'pax', 'Peaxi162Scf00004g04217' => 'pax', 'Peaxi162Scf00076g00331' => 'pax', 'PGR031G3449' => 'pgr', 'PGR102G1201' => 'pgr', 'PGR119G0755' => 'pgr', 'PGSC0003DMG400008362' => 'stu', 'PGSC0003DMG400009456' => 'stu', 'Phvul.001G121900' => 'pvu', 'Phvul.001G122000' => 'pvu', 'Phvul.001G122200' => 'pvu', 'Phvul.001G122300' => 'pvu', 'Phvul.001G122600' => 'pvu', 'Phvul.006G015900' => 'pvu', 'Phvul.007G244750' => 'pvu', 'Phvul.007G244800' => 'pvu', 'Phvul.008G202600' => 'pvu', 'Potri.001G273900' => 'ptr', 'Potri.006G040000' => 'ptr', 'Potri.009G068100' => 'ptr', 'Potri.016G035900' => 'ptr', 'Pp3c16_6980' => 'ppa', 'Pp3c25_580' => 'ppa', 'Pp3c6_13990' => 'ppa', 'Prupe.4G262500' => 'ppe', 'Prupe.7G034300' => 'ppe', 'Psat0s1289g0040' => 'psa', 'Psat0s6556g0040' => 'psa', 'Psat3g079680' => 'psa', 'Psat5g191200' => 'psa', 'Psat6g016520' => 'psa', 'PSO339G0835' => 'pso', 'PSO384G1060' => 'pso', 'QL01p016690' => 'qlo', 'QL07p010669' => 'qlo', 'QL07p011228' => 'qlo', 'RcHm_v2.0_Chr5g0050291' => 'rch', 'RcHm_v2.0_Chr6g0276171' => 'rch', 'Rhsim04G0112100' => 'rsi', 'Rhsim13G0206400' => 'rsi', 'Sabra06G0027000' => 'sbr', 'Sabra09G0051200' => 'sbr', 'Sabra16G0038100' => 'sbr', 'Sabra16G0168700' => 'sbr', 'SalBow3G0287' => 'sbo', 'SalBow6G4571' => 'sbo', 'SalBow6G5777' => 'sbo', 'Sc09g0001110' => 'sci', 'Sc13g0001080' => 'sci', 'Sed0005786' => 'sed', 'Sed0006291' => 'sed', 'Sed0015456' => 'sed', 'Sed0024245' => 'sed', 'Sed0027856' => 'sed', 'SEGI_01596' => 'sgi', 'SEGI_03578' => 'sgi', 'SEGI_09649' => 'sgi', 'SEGI_11242' => 'sgi', 'SEGI_13233' => 'sgi', 'SEGI_36644' => 'sgi', 'SEGI_38379' => 'sgi', 'SEGI_38657' => 'sgi', 'SGA_v2.0_scaffold26G11419' => 'sas', 'SGA_v2.0_scaffold8G04538' => 'sas', 'SMO119G0018' => 'smo', 'SMO340G0112' => 'smo', 'Solyc10g078410.2' => 'sly', 'Solyc11g065000.2' => 'sly', 'Sopen10g029070' => 'spe', 'Sopen11g024770' => 'spe', 'Sp1g10550' => 'spa', 'Sp4g23470' => 'spa', 'TAR623G0157' => 'tar', 'TAR633G2255' => 'tar', 'THA.LOC104824398' => 'tha', 'THA.LOC104826456' => 'tha', 'Thecc.05G128500' => 'tca', 'Thecc.09G246400' => 'tca', 'Thhalv10007953m.g' => 'esa', 'Thhalv10016802m.g' => 'esa', 'TPR.G16082' => 'tpr', 'TPR.G16091' => 'tpr', 'TPR.G16416' => 'tpr', 'TPR.G24388' => 'tpr', 'TPR.G34636' => 'tpr', 'TPR.G40411' => 'tpr', 'TWI31G0759' => 'twi', 'TWI53G0375' => 'twi', 'TWI75G0745' => 'twi', 'unitig_0.g602' => 'ugi', 'unitig_90.g27490' => 'ugi', 'vmacro04044' => 'vma', 'VMungo0540G0761' => 'vmu', 'VMungo0647G0496' => 'vmu', 'VMungo0720G0011' => 'vmu', 'VMungo0720G3112' => 'vmu', 'VMungo1383G0305' => 'vmu', 'VMungo1383G0818' => 'vmu', 'VMungo1383G1429' => 'vmu', 'Zm00001eb129100' => 'zma', 'Zm00001eb150400' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002003', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002003' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002003', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '331', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002003' ) ), 'genes' => array( 'A05p02080' => 'bna', 'A06p09540' => 'bna', 'A09p64250' => 'bna', 'Aa31LG3G830' => 'aar', 'Aa31LG3G880' => 'aar', 'Aa31LG5G8940' => 'aar', 'Aa31sc1418G10' => 'aar', 'Aa31sc1418G30' => 'aar', 'Actinidia06977' => 'ach', 'Actinidia17703' => 'ach', 'Actinidia24471' => 'ach', 'Actinidia38171' => 'ach', 'Ah.04g159690' => 'amhyb', 'Ah.13g076820' => 'amhyb', 'AL4G20060' => 'aly', 'AL4G27970' => 'aly', 'AL4G39140' => 'aly', 'Aqoxy1G00375' => 'aox', 'Aqoxy2G00433' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7CMH8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC671X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCA3CT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2062V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG9DVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6ISWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0A6F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0ISQJ' => 'arhy', 'AT2G26850' => 'ath', 'AT2G32560' => 'ath', 'AT2G41170' => 'ath', 'ATR0307G065' => 'atr', 'Atru.chr1.1395' => 'acertr', 'Atru.chr3.3003' => 'acertr', 'AUR62000211' => 'cqu', 'AUR62006557' => 'cqu', 'AUR62018356' => 'cqu', 'AUR62030306' => 'cqu', 'AUR62035454' => 'cqu', 'BcaC02g12757' => 'bca', 'BcaC02g12845' => 'bca', 'BcaC02g12846' => 'bca', 'BcaNung05630' => 'bca', 'BolC4t21892H' => 'bol', 'BolC5t29874H' => 'bol', 'BolC8t52324H' => 'bol', 'BraA05t19204Z' => 'bra', 'BraA06t24144Z' => 'bra', 'BraA09t41769Z' => 'bra', 'C04p02490' => 'bna', 'C04p68800' => 'bna', 'C04p68810' => 'bna', 'C08p47860' => 'bna', 'CAN.G468.7' => 'can', 'CAN.G960.62' => 'can', 'CANSAT54G0357' => 'cansat', 'CANSAT64G1506' => 'cansat', 'CARHR126420' => 'chi', 'CARHR136260' => 'chi', 'Carub.0004s0732' => 'cru', 'Carub.0004s1390' => 'cru', 'Carub.0004s2348' => 'cru', 'Ca_06191_v3' => 'car', 'Ca_08385_v3' => 'car', 'CBR_g19731' => 'cbr', 'CBR_g6621' => 'cbr', 'CBR_g89832' => 'cbr', 'Cc01_g06240' => 'ccan', 'Cc06_g19620' => 'ccan', 'CDE02G1132' => 'cde', 'CDE04G0535' => 'cde', 'CDE08G0103' => 'cde', 'Cfa009896' => 'cfa', 'Cfa019997' => 'cfa', 'Ciclev10011910m.g' => 'ccl', 'Ciclev10015455m.g' => 'ccl', 'CiPaw.09G048600' => 'cil', 'CiPaw.10G040600' => 'cil', 'CiPaw.13G148800' => 'cil', 'CiPaw.14G111200' => 'cil', 'ClCG02G022740' => 'cla', 'ClCG10G013640' => 'cla', 'COL.COLO4_07337' => 'col', 'COL.COLO4_37459' => 'col', 'Cpa.g.sc34.181' => 'cpa', 'Cpa.g.sc92.88' => 'cpa', 'CsaV3_3G043010' => 'csa', 'CsaV3_6G038860' => 'csa', 'CSS0013608' => 'camsi', 'CSS0027882' => 'camsi', 'CSS0048089' => 'camsi', 'DCAR_002097' => 'dca', 'DCAR_013645' => 'dca', 'DCAR_016883' => 'dca', 'DCAR_020578' => 'dca', 'Dinv01679' => 'din', 'Dinv03207' => 'din', 'Dinv04577' => 'din', 'Dinv05307' => 'din', 'Dinv36153' => 'din', 'Duzib093G0829' => 'dzi', 'Duzib106G1914' => 'dzi', 'Duzib150G0616' => 'dzi', 'Duzib168G1203' => 'dzi', 'Duzib170G0954' => 'dzi', 'ECA233G2074' => 'eca', 'ECA238G1916' => 'eca', 'ECA248G0456' => 'eca', 'EL10Ac2g03500' => 'bvu', 'EL10Ac3g07248' => 'bvu', 'EL10Ac4g10097' => 'bvu', 'EL10Ac9g20681' => 'bvu', 'EL10Ac9g20682' => 'bvu', 'EL10Ac9g22559' => 'bvu', 'Eucgr.A02233' => 'egr', 'Eucgr.B03749' => 'egr', 'Eucgr.J00678' => 'egr', 'FAN11G1523' => 'fan', 'FAN15G1480' => 'fan', 'FAN16G1765' => 'fan', 'FAN20G0911' => 'fan', 'FAN21G0459' => 'fan', 'FAN24G2135' => 'fan', 'FAN25G0532' => 'fan', 'FAN25G3536' => 'fan', 'FvH4_2g14090' => 'fve', 'FvH4_3g27720' => 'fve', 'Glyma.02G278300' => 'gma', 'Glyma.03G126600' => 'gma', 'Glyma.03G126700' => 'gma', 'Glyma.03G126800' => 'gma', 'Glyma.03G126900' => 'gma', 'Glyma.07G235500' => 'gma', 'Glyma.10G102300' => 'gma', 'Glyma.14G036300' => 'gma', 'Glyma.19G129600' => 'gma', 'Glyma.20G042200' => 'gma', 'Gohir.A05G073700' => 'ghi', 'Gohir.A09G110920' => 'ghi', 'Gohir.A11G306900' => 'ghi', 'Gohir.D05G076600' => 'ghi', 'Gohir.D09G107500' => 'ghi', 'Gohir.D11G322400' => 'ghi', 'Gorai.006G125100' => 'gra', 'Gorai.007G352500' => 'gra', 'Gorai.009G077900' => 'gra', 'GSVIVG01025740001' => 'vvi', 'GSVIVG01037337001' => 'vvi', 'HanXRQChr01g0008111' => 'han', 'HanXRQChr12g0380441' => 'han', 'HanXRQChr13g0388181' => 'han', 'HanXRQChr14g0432271' => 'han', 'Haze_20236' => 'cav', 'Haze_23258' => 'cav', 'Hma1.2p1_0252F.1_g102790' => 'hma', 'Hma1.2p1_0460F.1_g157560' => 'hma', 'HPP92_001028' => 'vpl', 'HPP92_013905' => 'vpl', 'HPP92_013906' => 'vpl', 'HPP92_018979' => 'vpl', 'HPP92_019777' => 'vpl', 'Hund07425' => 'sun', 'Hund19088' => 'sun', 'Hund21964' => 'sun', 'Lalb_Chr04g0249291' => 'lal', 'Lalb_Chr10g0106151' => 'lal', 'Lalb_Chr17g0347781' => 'lal', 'Lalb_Chr17g0347811' => 'lal', 'Lalb_Chr17g0347821' => 'lal', 'Lalb_Chr22g0357521' => 'lal', 'Lj1C318T0' => 'lonja', 'Lj1g0000041' => 'lja', 'Lj1g0001568' => 'lja', 'Lj1g0002475' => 'lja', 'Lj1g0004628' => 'lja', 'Lj1g0006789' => 'lja', 'Lj1g0014198' => 'lja', 'Lj1g0014794' => 'lja', 'Lj1g0021192' => 'lja', 'Lj1g0024236' => 'lja', 'Lj2A401T9' => 'lonja', 'Lj3g0024240' => 'lja', 'Lj6g0015131' => 'lja', 'LjContig00564g0015742' => 'lja', 'Lsat_1_v5_gn_2_32541' => 'lsa', 'Lsat_1_v5_gn_5_157480' => 'lsa', 'Lsat_1_v5_gn_5_63140' => 'lsa', 'Manes.02G136800' => 'mes', 'Manes.09G003900' => 'mes', 'Mapoly0086s0017' => 'mpo', 'MBI13_g09218_MAGBIO' => 'mbi', 'MBI19_g44709_MAGBIO' => 'mbi', 'MD03G1164600' => 'mdo', 'MD11G1183200' => 'mdo', 'MD12G1096100' => 'mdo', 'MD14G1089800' => 'mdo', 'Medtr1030s0010' => 'mtr', 'Medtr3g436860' => 'mtr', 'Medtr5g089110' => 'mtr', 'Medtr6g039460' => 'mtr', 'Medtr6g039470' => 'mtr', 'Medtr7g089560' => 'mtr', 'Medtr7g089640' => 'mtr', 'Medtr7g089670' => 'mtr', 'Medtr7g089700' => 'mtr', 'Medtr7g089720' => 'mtr', 'Medtr7g089730' => 'mtr', 'MELO3C014551.2' => 'cme', 'MELO3C026603.2' => 'cme', 'Migut.D00674' => 'egut', 'Migut.J01645' => 'egut', 'Migut.N02379' => 'egut', 'MSTRG.10789' => 'ama', 'MSTRG.17637' => 'ama', 'MSTRG.19797' => 'ama', 'Nitab4.5_0000812g0070' => 'nta', 'Nitab4.5_0004588g0020' => 'nta', 'Nitab4.5_0006764g0010' => 'nta', 'Nitab4.5_0007012g0010' => 'nta', 'Nn2g14674' => 'nnu', 'Nn7g36810' => 'nnu', 'Oeu005203.2' => 'oeu', 'Oeu012573.1' => 'oeu', 'Oeu012574.1' => 'oeu', 'Oeu025911.1' => 'oeu', 'Oeu045936.1' => 'oeu', 'Oeu049270.1' => 'oeu', 'Oeu061122.1' => 'oeu', 'Oeu061698.1' => 'oeu', 'Os01g0281000' => 'osa', 'Os01g0806200' => 'osa', 'Peaxi162Scf00003g04918' => 'pax', 'Peaxi162Scf00004g04217' => 'pax', 'Peaxi162Scf00076g00331' => 'pax', 'PGR031G3449' => 'pgr', 'PGR102G1201' => 'pgr', 'PGR119G0755' => 'pgr', 'PGSC0003DMG400008362' => 'stu', 'PGSC0003DMG400009456' => 'stu', 'Phvul.001G121900' => 'pvu', 'Phvul.001G122000' => 'pvu', 'Phvul.001G122200' => 'pvu', 'Phvul.001G122300' => 'pvu', 'Phvul.001G122600' => 'pvu', 'Phvul.006G015900' => 'pvu', 'Phvul.007G244750' => 'pvu', 'Phvul.007G244800' => 'pvu', 'Phvul.008G202600' => 'pvu', 'Potri.001G273900' => 'ptr', 'Potri.006G040000' => 'ptr', 'Potri.009G068100' => 'ptr', 'Potri.016G035900' => 'ptr', 'Pp3c16_6980' => 'ppa', 'Pp3c25_580' => 'ppa', 'Pp3c6_13990' => 'ppa', 'Prupe.4G262500' => 'ppe', 'Prupe.7G034300' => 'ppe', 'Psat0s1289g0040' => 'psa', 'Psat0s6556g0040' => 'psa', 'Psat3g079680' => 'psa', 'Psat5g191200' => 'psa', 'Psat6g016520' => 'psa', 'PSO339G0835' => 'pso', 'PSO384G1060' => 'pso', 'QL01p016690' => 'qlo', 'QL07p010669' => 'qlo', 'QL07p011228' => 'qlo', 'RcHm_v2.0_Chr5g0050291' => 'rch', 'RcHm_v2.0_Chr6g0276171' => 'rch', 'Rhsim04G0112100' => 'rsi', 'Rhsim13G0206400' => 'rsi', 'Sabra06G0027000' => 'sbr', 'Sabra09G0051200' => 'sbr', 'Sabra16G0038100' => 'sbr', 'Sabra16G0168700' => 'sbr', 'SalBow3G0287' => 'sbo', 'SalBow6G4571' => 'sbo', 'SalBow6G5777' => 'sbo', 'Sc09g0001110' => 'sci', 'Sc13g0001080' => 'sci', 'Sed0005786' => 'sed', 'Sed0006291' => 'sed', 'Sed0015456' => 'sed', 'Sed0024245' => 'sed', 'Sed0027856' => 'sed', 'SEGI_01596' => 'sgi', 'SEGI_03578' => 'sgi', 'SEGI_09649' => 'sgi', 'SEGI_11242' => 'sgi', 'SEGI_13233' => 'sgi', 'SEGI_36644' => 'sgi', 'SEGI_38379' => 'sgi', 'SEGI_38657' => 'sgi', 'SGA_v2.0_scaffold26G11419' => 'sas', 'SGA_v2.0_scaffold8G04538' => 'sas', 'SMO119G0018' => 'smo', 'SMO340G0112' => 'smo', 'Solyc10g078410.2' => 'sly', 'Solyc11g065000.2' => 'sly', 'Sopen10g029070' => 'spe', 'Sopen11g024770' => 'spe', 'Sp1g10550' => 'spa', 'Sp4g23470' => 'spa', 'TAR623G0157' => 'tar', 'TAR633G2255' => 'tar', 'THA.LOC104824398' => 'tha', 'THA.LOC104826456' => 'tha', 'Thecc.05G128500' => 'tca', 'Thecc.09G246400' => 'tca', 'Thhalv10007953m.g' => 'esa', 'Thhalv10016802m.g' => 'esa', 'TPR.G16082' => 'tpr', 'TPR.G16091' => 'tpr', 'TPR.G16416' => 'tpr', 'TPR.G24388' => 'tpr', 'TPR.G34636' => 'tpr', 'TPR.G40411' => 'tpr', 'TWI31G0759' => 'twi', 'TWI53G0375' => 'twi', 'TWI75G0745' => 'twi', 'unitig_0.g602' => 'ugi', 'unitig_90.g27490' => 'ugi', 'vmacro04044' => 'vma', 'VMungo0540G0761' => 'vmu', 'VMungo0647G0496' => 'vmu', 'VMungo0720G0011' => 'vmu', 'VMungo0720G3112' => 'vmu', 'VMungo1383G0305' => 'vmu', 'VMungo1383G0818' => 'vmu', 'VMungo1383G1429' => 'vmu', 'Zm00001eb129100' => 'zma', 'Zm00001eb150400' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002003' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002003' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002003' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002003' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002003', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '331', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A05p02080' => 'bna', 'A06p09540' => 'bna', 'A09p64250' => 'bna', 'Aa31LG3G830' => 'aar', 'Aa31LG3G880' => 'aar', 'Aa31LG5G8940' => 'aar', 'Aa31sc1418G10' => 'aar', 'Aa31sc1418G30' => 'aar', 'Actinidia06977' => 'ach', 'Actinidia17703' => 'ach', 'Actinidia24471' => 'ach', 'Actinidia38171' => 'ach', 'Ah.04g159690' => 'amhyb', 'Ah.13g076820' => 'amhyb', 'AL4G20060' => 'aly', 'AL4G27970' => 'aly', 'AL4G39140' => 'aly', 'Aqoxy1G00375' => 'aox', 'Aqoxy2G00433' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7CMH8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC671X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCA3CT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2062V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG9DVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6ISWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0A6F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0ISQJ' => 'arhy', 'AT2G26850' => 'ath', 'AT2G32560' => 'ath', 'AT2G41170' => 'ath', 'ATR0307G065' => 'atr', 'Atru.chr1.1395' => 'acertr', 'Atru.chr3.3003' => 'acertr', 'AUR62000211' => 'cqu', 'AUR62006557' => 'cqu', 'AUR62018356' => 'cqu', 'AUR62030306' => 'cqu', 'AUR62035454' => 'cqu', 'BcaC02g12757' => 'bca', 'BcaC02g12845' => 'bca', 'BcaC02g12846' => 'bca', 'BcaNung05630' => 'bca', 'BolC4t21892H' => 'bol', 'BolC5t29874H' => 'bol', 'BolC8t52324H' => 'bol', 'BraA05t19204Z' => 'bra', 'BraA06t24144Z' => 'bra', 'BraA09t41769Z' => 'bra', 'C04p02490' => 'bna', 'C04p68800' => 'bna', 'C04p68810' => 'bna', 'C08p47860' => 'bna', 'CAN.G468.7' => 'can', 'CAN.G960.62' => 'can', 'CANSAT54G0357' => 'cansat', 'CANSAT64G1506' => 'cansat', 'CARHR126420' => 'chi', 'CARHR136260' => 'chi', 'Carub.0004s0732' => 'cru', 'Carub.0004s1390' => 'cru', 'Carub.0004s2348' => 'cru', 'Ca_06191_v3' => 'car', 'Ca_08385_v3' => 'car', 'CBR_g19731' => 'cbr', 'CBR_g6621' => 'cbr', 'CBR_g89832' => 'cbr', 'Cc01_g06240' => 'ccan', 'Cc06_g19620' => 'ccan', 'CDE02G1132' => 'cde', 'CDE04G0535' => 'cde', 'CDE08G0103' => 'cde', 'Cfa009896' => 'cfa', 'Cfa019997' => 'cfa', 'Ciclev10011910m.g' => 'ccl', 'Ciclev10015455m.g' => 'ccl', 'CiPaw.09G048600' => 'cil', 'CiPaw.10G040600' => 'cil', 'CiPaw.13G148800' => 'cil', 'CiPaw.14G111200' => 'cil', 'ClCG02G022740' => 'cla', 'ClCG10G013640' => 'cla', 'COL.COLO4_07337' => 'col', 'COL.COLO4_37459' => 'col', 'Cpa.g.sc34.181' => 'cpa', 'Cpa.g.sc92.88' => 'cpa', 'CsaV3_3G043010' => 'csa', 'CsaV3_6G038860' => 'csa', 'CSS0013608' => 'camsi', 'CSS0027882' => 'camsi', 'CSS0048089' => 'camsi', 'DCAR_002097' => 'dca', 'DCAR_013645' => 'dca', 'DCAR_016883' => 'dca', 'DCAR_020578' => 'dca', 'Dinv01679' => 'din', 'Dinv03207' => 'din', 'Dinv04577' => 'din', 'Dinv05307' => 'din', 'Dinv36153' => 'din', 'Duzib093G0829' => 'dzi', 'Duzib106G1914' => 'dzi', 'Duzib150G0616' => 'dzi', 'Duzib168G1203' => 'dzi', 'Duzib170G0954' => 'dzi', 'ECA233G2074' => 'eca', 'ECA238G1916' => 'eca', 'ECA248G0456' => 'eca', 'EL10Ac2g03500' => 'bvu', 'EL10Ac3g07248' => 'bvu', 'EL10Ac4g10097' => 'bvu', 'EL10Ac9g20681' => 'bvu', 'EL10Ac9g20682' => 'bvu', 'EL10Ac9g22559' => 'bvu', 'Eucgr.A02233' => 'egr', 'Eucgr.B03749' => 'egr', 'Eucgr.J00678' => 'egr', 'FAN11G1523' => 'fan', 'FAN15G1480' => 'fan', 'FAN16G1765' => 'fan', 'FAN20G0911' => 'fan', 'FAN21G0459' => 'fan', 'FAN24G2135' => 'fan', 'FAN25G0532' => 'fan', 'FAN25G3536' => 'fan', 'FvH4_2g14090' => 'fve', 'FvH4_3g27720' => 'fve', 'Glyma.02G278300' => 'gma', 'Glyma.03G126600' => 'gma', 'Glyma.03G126700' => 'gma', 'Glyma.03G126800' => 'gma', 'Glyma.03G126900' => 'gma', 'Glyma.07G235500' => 'gma', 'Glyma.10G102300' => 'gma', 'Glyma.14G036300' => 'gma', 'Glyma.19G129600' => 'gma', 'Glyma.20G042200' => 'gma', 'Gohir.A05G073700' => 'ghi', 'Gohir.A09G110920' => 'ghi', 'Gohir.A11G306900' => 'ghi', 'Gohir.D05G076600' => 'ghi', 'Gohir.D09G107500' => 'ghi', 'Gohir.D11G322400' => 'ghi', 'Gorai.006G125100' => 'gra', 'Gorai.007G352500' => 'gra', 'Gorai.009G077900' => 'gra', 'GSVIVG01025740001' => 'vvi', 'GSVIVG01037337001' => 'vvi', 'HanXRQChr01g0008111' => 'han', 'HanXRQChr12g0380441' => 'han', 'HanXRQChr13g0388181' => 'han', 'HanXRQChr14g0432271' => 'han', 'Haze_20236' => 'cav', 'Haze_23258' => 'cav', 'Hma1.2p1_0252F.1_g102790' => 'hma', 'Hma1.2p1_0460F.1_g157560' => 'hma', 'HPP92_001028' => 'vpl', 'HPP92_013905' => 'vpl', 'HPP92_013906' => 'vpl', 'HPP92_018979' => 'vpl', 'HPP92_019777' => 'vpl', 'Hund07425' => 'sun', 'Hund19088' => 'sun', 'Hund21964' => 'sun', 'Lalb_Chr04g0249291' => 'lal', 'Lalb_Chr10g0106151' => 'lal', 'Lalb_Chr17g0347781' => 'lal', 'Lalb_Chr17g0347811' => 'lal', 'Lalb_Chr17g0347821' => 'lal', 'Lalb_Chr22g0357521' => 'lal', 'Lj1C318T0' => 'lonja', 'Lj1g0000041' => 'lja', 'Lj1g0001568' => 'lja', 'Lj1g0002475' => 'lja', 'Lj1g0004628' => 'lja', 'Lj1g0006789' => 'lja', 'Lj1g0014198' => 'lja', 'Lj1g0014794' => 'lja', 'Lj1g0021192' => 'lja', 'Lj1g0024236' => 'lja', 'Lj2A401T9' => 'lonja', 'Lj3g0024240' => 'lja', 'Lj6g0015131' => 'lja', 'LjContig00564g0015742' => 'lja', 'Lsat_1_v5_gn_2_32541' => 'lsa', 'Lsat_1_v5_gn_5_157480' => 'lsa', 'Lsat_1_v5_gn_5_63140' => 'lsa', 'Manes.02G136800' => 'mes', 'Manes.09G003900' => 'mes', 'Mapoly0086s0017' => 'mpo', 'MBI13_g09218_MAGBIO' => 'mbi', 'MBI19_g44709_MAGBIO' => 'mbi', 'MD03G1164600' => 'mdo', 'MD11G1183200' => 'mdo', 'MD12G1096100' => 'mdo', 'MD14G1089800' => 'mdo', 'Medtr1030s0010' => 'mtr', 'Medtr3g436860' => 'mtr', 'Medtr5g089110' => 'mtr', 'Medtr6g039460' => 'mtr', 'Medtr6g039470' => 'mtr', 'Medtr7g089560' => 'mtr', 'Medtr7g089640' => 'mtr', 'Medtr7g089670' => 'mtr', 'Medtr7g089700' => 'mtr', 'Medtr7g089720' => 'mtr', 'Medtr7g089730' => 'mtr', 'MELO3C014551.2' => 'cme', 'MELO3C026603.2' => 'cme', 'Migut.D00674' => 'egut', 'Migut.J01645' => 'egut', 'Migut.N02379' => 'egut', 'MSTRG.10789' => 'ama', 'MSTRG.17637' => 'ama', 'MSTRG.19797' => 'ama', 'Nitab4.5_0000812g0070' => 'nta', 'Nitab4.5_0004588g0020' => 'nta', 'Nitab4.5_0006764g0010' => 'nta', 'Nitab4.5_0007012g0010' => 'nta', 'Nn2g14674' => 'nnu', 'Nn7g36810' => 'nnu', 'Oeu005203.2' => 'oeu', 'Oeu012573.1' => 'oeu', 'Oeu012574.1' => 'oeu', 'Oeu025911.1' => 'oeu', 'Oeu045936.1' => 'oeu', 'Oeu049270.1' => 'oeu', 'Oeu061122.1' => 'oeu', 'Oeu061698.1' => 'oeu', 'Os01g0281000' => 'osa', 'Os01g0806200' => 'osa', 'Peaxi162Scf00003g04918' => 'pax', 'Peaxi162Scf00004g04217' => 'pax', 'Peaxi162Scf00076g00331' => 'pax', 'PGR031G3449' => 'pgr', 'PGR102G1201' => 'pgr', 'PGR119G0755' => 'pgr', 'PGSC0003DMG400008362' => 'stu', 'PGSC0003DMG400009456' => 'stu', 'Phvul.001G121900' => 'pvu', 'Phvul.001G122000' => 'pvu', 'Phvul.001G122200' => 'pvu', 'Phvul.001G122300' => 'pvu', 'Phvul.001G122600' => 'pvu', 'Phvul.006G015900' => 'pvu', 'Phvul.007G244750' => 'pvu', 'Phvul.007G244800' => 'pvu', 'Phvul.008G202600' => 'pvu', 'Potri.001G273900' => 'ptr', 'Potri.006G040000' => 'ptr', 'Potri.009G068100' => 'ptr', 'Potri.016G035900' => 'ptr', 'Pp3c16_6980' => 'ppa', 'Pp3c25_580' => 'ppa', 'Pp3c6_13990' => 'ppa', 'Prupe.4G262500' => 'ppe', 'Prupe.7G034300' => 'ppe', 'Psat0s1289g0040' => 'psa', 'Psat0s6556g0040' => 'psa', 'Psat3g079680' => 'psa', 'Psat5g191200' => 'psa', 'Psat6g016520' => 'psa', 'PSO339G0835' => 'pso', 'PSO384G1060' => 'pso', 'QL01p016690' => 'qlo', 'QL07p010669' => 'qlo', 'QL07p011228' => 'qlo', 'RcHm_v2.0_Chr5g0050291' => 'rch', 'RcHm_v2.0_Chr6g0276171' => 'rch', 'Rhsim04G0112100' => 'rsi', 'Rhsim13G0206400' => 'rsi', 'Sabra06G0027000' => 'sbr', 'Sabra09G0051200' => 'sbr', 'Sabra16G0038100' => 'sbr', 'Sabra16G0168700' => 'sbr', 'SalBow3G0287' => 'sbo', 'SalBow6G4571' => 'sbo', 'SalBow6G5777' => 'sbo', 'Sc09g0001110' => 'sci', 'Sc13g0001080' => 'sci', 'Sed0005786' => 'sed', 'Sed0006291' => 'sed', 'Sed0015456' => 'sed', 'Sed0024245' => 'sed', 'Sed0027856' => 'sed', 'SEGI_01596' => 'sgi', 'SEGI_03578' => 'sgi', 'SEGI_09649' => 'sgi', 'SEGI_11242' => 'sgi', 'SEGI_13233' => 'sgi', 'SEGI_36644' => 'sgi', 'SEGI_38379' => 'sgi', 'SEGI_38657' => 'sgi', 'SGA_v2.0_scaffold26G11419' => 'sas', 'SGA_v2.0_scaffold8G04538' => 'sas', 'SMO119G0018' => 'smo', 'SMO340G0112' => 'smo', 'Solyc10g078410.2' => 'sly', 'Solyc11g065000.2' => 'sly', 'Sopen10g029070' => 'spe', 'Sopen11g024770' => 'spe', 'Sp1g10550' => 'spa', 'Sp4g23470' => 'spa', 'TAR623G0157' => 'tar', 'TAR633G2255' => 'tar', 'THA.LOC104824398' => 'tha', 'THA.LOC104826456' => 'tha', 'Thecc.05G128500' => 'tca', 'Thecc.09G246400' => 'tca', 'Thhalv10007953m.g' => 'esa', 'Thhalv10016802m.g' => 'esa', 'TPR.G16082' => 'tpr', 'TPR.G16091' => 'tpr', 'TPR.G16416' => 'tpr', 'TPR.G24388' => 'tpr', 'TPR.G34636' => 'tpr', 'TPR.G40411' => 'tpr', 'TWI31G0759' => 'twi', 'TWI53G0375' => 'twi', 'TWI75G0745' => 'twi', 'unitig_0.g602' => 'ugi', 'unitig_90.g27490' => 'ugi', 'vmacro04044' => 'vma', 'VMungo0540G0761' => 'vmu', 'VMungo0647G0496' => 'vmu', 'VMungo0720G0011' => 'vmu', 'VMungo0720G3112' => 'vmu', 'VMungo1383G0305' => 'vmu', 'VMungo1383G0818' => 'vmu', 'VMungo1383G1429' => 'vmu', 'Zm00001eb129100' => 'zma', 'Zm00001eb150400' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002003', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002003' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002003', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '331', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002003' ) ), 'genes' => array( 'A05p02080' => 'bna', 'A06p09540' => 'bna', 'A09p64250' => 'bna', 'Aa31LG3G830' => 'aar', 'Aa31LG3G880' => 'aar', 'Aa31LG5G8940' => 'aar', 'Aa31sc1418G10' => 'aar', 'Aa31sc1418G30' => 'aar', 'Actinidia06977' => 'ach', 'Actinidia17703' => 'ach', 'Actinidia24471' => 'ach', 'Actinidia38171' => 'ach', 'Ah.04g159690' => 'amhyb', 'Ah.13g076820' => 'amhyb', 'AL4G20060' => 'aly', 'AL4G27970' => 'aly', 'AL4G39140' => 'aly', 'Aqoxy1G00375' => 'aox', 'Aqoxy2G00433' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7CMH8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC671X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCA3CT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2062V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG9DVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6ISWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0A6F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0ISQJ' => 'arhy', 'AT2G26850' => 'ath', 'AT2G32560' => 'ath', 'AT2G41170' => 'ath', 'ATR0307G065' => 'atr', 'Atru.chr1.1395' => 'acertr', 'Atru.chr3.3003' => 'acertr', 'AUR62000211' => 'cqu', 'AUR62006557' => 'cqu', 'AUR62018356' => 'cqu', 'AUR62030306' => 'cqu', 'AUR62035454' => 'cqu', 'BcaC02g12757' => 'bca', 'BcaC02g12845' => 'bca', 'BcaC02g12846' => 'bca', 'BcaNung05630' => 'bca', 'BolC4t21892H' => 'bol', 'BolC5t29874H' => 'bol', 'BolC8t52324H' => 'bol', 'BraA05t19204Z' => 'bra', 'BraA06t24144Z' => 'bra', 'BraA09t41769Z' => 'bra', 'C04p02490' => 'bna', 'C04p68800' => 'bna', 'C04p68810' => 'bna', 'C08p47860' => 'bna', 'CAN.G468.7' => 'can', 'CAN.G960.62' => 'can', 'CANSAT54G0357' => 'cansat', 'CANSAT64G1506' => 'cansat', 'CARHR126420' => 'chi', 'CARHR136260' => 'chi', 'Carub.0004s0732' => 'cru', 'Carub.0004s1390' => 'cru', 'Carub.0004s2348' => 'cru', 'Ca_06191_v3' => 'car', 'Ca_08385_v3' => 'car', 'CBR_g19731' => 'cbr', 'CBR_g6621' => 'cbr', 'CBR_g89832' => 'cbr', 'Cc01_g06240' => 'ccan', 'Cc06_g19620' => 'ccan', 'CDE02G1132' => 'cde', 'CDE04G0535' => 'cde', 'CDE08G0103' => 'cde', 'Cfa009896' => 'cfa', 'Cfa019997' => 'cfa', 'Ciclev10011910m.g' => 'ccl', 'Ciclev10015455m.g' => 'ccl', 'CiPaw.09G048600' => 'cil', 'CiPaw.10G040600' => 'cil', 'CiPaw.13G148800' => 'cil', 'CiPaw.14G111200' => 'cil', 'ClCG02G022740' => 'cla', 'ClCG10G013640' => 'cla', 'COL.COLO4_07337' => 'col', 'COL.COLO4_37459' => 'col', 'Cpa.g.sc34.181' => 'cpa', 'Cpa.g.sc92.88' => 'cpa', 'CsaV3_3G043010' => 'csa', 'CsaV3_6G038860' => 'csa', 'CSS0013608' => 'camsi', 'CSS0027882' => 'camsi', 'CSS0048089' => 'camsi', 'DCAR_002097' => 'dca', 'DCAR_013645' => 'dca', 'DCAR_016883' => 'dca', 'DCAR_020578' => 'dca', 'Dinv01679' => 'din', 'Dinv03207' => 'din', 'Dinv04577' => 'din', 'Dinv05307' => 'din', 'Dinv36153' => 'din', 'Duzib093G0829' => 'dzi', 'Duzib106G1914' => 'dzi', 'Duzib150G0616' => 'dzi', 'Duzib168G1203' => 'dzi', 'Duzib170G0954' => 'dzi', 'ECA233G2074' => 'eca', 'ECA238G1916' => 'eca', 'ECA248G0456' => 'eca', 'EL10Ac2g03500' => 'bvu', 'EL10Ac3g07248' => 'bvu', 'EL10Ac4g10097' => 'bvu', 'EL10Ac9g20681' => 'bvu', 'EL10Ac9g20682' => 'bvu', 'EL10Ac9g22559' => 'bvu', 'Eucgr.A02233' => 'egr', 'Eucgr.B03749' => 'egr', 'Eucgr.J00678' => 'egr', 'FAN11G1523' => 'fan', 'FAN15G1480' => 'fan', 'FAN16G1765' => 'fan', 'FAN20G0911' => 'fan', 'FAN21G0459' => 'fan', 'FAN24G2135' => 'fan', 'FAN25G0532' => 'fan', 'FAN25G3536' => 'fan', 'FvH4_2g14090' => 'fve', 'FvH4_3g27720' => 'fve', 'Glyma.02G278300' => 'gma', 'Glyma.03G126600' => 'gma', 'Glyma.03G126700' => 'gma', 'Glyma.03G126800' => 'gma', 'Glyma.03G126900' => 'gma', 'Glyma.07G235500' => 'gma', 'Glyma.10G102300' => 'gma', 'Glyma.14G036300' => 'gma', 'Glyma.19G129600' => 'gma', 'Glyma.20G042200' => 'gma', 'Gohir.A05G073700' => 'ghi', 'Gohir.A09G110920' => 'ghi', 'Gohir.A11G306900' => 'ghi', 'Gohir.D05G076600' => 'ghi', 'Gohir.D09G107500' => 'ghi', 'Gohir.D11G322400' => 'ghi', 'Gorai.006G125100' => 'gra', 'Gorai.007G352500' => 'gra', 'Gorai.009G077900' => 'gra', 'GSVIVG01025740001' => 'vvi', 'GSVIVG01037337001' => 'vvi', 'HanXRQChr01g0008111' => 'han', 'HanXRQChr12g0380441' => 'han', 'HanXRQChr13g0388181' => 'han', 'HanXRQChr14g0432271' => 'han', 'Haze_20236' => 'cav', 'Haze_23258' => 'cav', 'Hma1.2p1_0252F.1_g102790' => 'hma', 'Hma1.2p1_0460F.1_g157560' => 'hma', 'HPP92_001028' => 'vpl', 'HPP92_013905' => 'vpl', 'HPP92_013906' => 'vpl', 'HPP92_018979' => 'vpl', 'HPP92_019777' => 'vpl', 'Hund07425' => 'sun', 'Hund19088' => 'sun', 'Hund21964' => 'sun', 'Lalb_Chr04g0249291' => 'lal', 'Lalb_Chr10g0106151' => 'lal', 'Lalb_Chr17g0347781' => 'lal', 'Lalb_Chr17g0347811' => 'lal', 'Lalb_Chr17g0347821' => 'lal', 'Lalb_Chr22g0357521' => 'lal', 'Lj1C318T0' => 'lonja', 'Lj1g0000041' => 'lja', 'Lj1g0001568' => 'lja', 'Lj1g0002475' => 'lja', 'Lj1g0004628' => 'lja', 'Lj1g0006789' => 'lja', 'Lj1g0014198' => 'lja', 'Lj1g0014794' => 'lja', 'Lj1g0021192' => 'lja', 'Lj1g0024236' => 'lja', 'Lj2A401T9' => 'lonja', 'Lj3g0024240' => 'lja', 'Lj6g0015131' => 'lja', 'LjContig00564g0015742' => 'lja', 'Lsat_1_v5_gn_2_32541' => 'lsa', 'Lsat_1_v5_gn_5_157480' => 'lsa', 'Lsat_1_v5_gn_5_63140' => 'lsa', 'Manes.02G136800' => 'mes', 'Manes.09G003900' => 'mes', 'Mapoly0086s0017' => 'mpo', 'MBI13_g09218_MAGBIO' => 'mbi', 'MBI19_g44709_MAGBIO' => 'mbi', 'MD03G1164600' => 'mdo', 'MD11G1183200' => 'mdo', 'MD12G1096100' => 'mdo', 'MD14G1089800' => 'mdo', 'Medtr1030s0010' => 'mtr', 'Medtr3g436860' => 'mtr', 'Medtr5g089110' => 'mtr', 'Medtr6g039460' => 'mtr', 'Medtr6g039470' => 'mtr', 'Medtr7g089560' => 'mtr', 'Medtr7g089640' => 'mtr', 'Medtr7g089670' => 'mtr', 'Medtr7g089700' => 'mtr', 'Medtr7g089720' => 'mtr', 'Medtr7g089730' => 'mtr', 'MELO3C014551.2' => 'cme', 'MELO3C026603.2' => 'cme', 'Migut.D00674' => 'egut', 'Migut.J01645' => 'egut', 'Migut.N02379' => 'egut', 'MSTRG.10789' => 'ama', 'MSTRG.17637' => 'ama', 'MSTRG.19797' => 'ama', 'Nitab4.5_0000812g0070' => 'nta', 'Nitab4.5_0004588g0020' => 'nta', 'Nitab4.5_0006764g0010' => 'nta', 'Nitab4.5_0007012g0010' => 'nta', 'Nn2g14674' => 'nnu', 'Nn7g36810' => 'nnu', 'Oeu005203.2' => 'oeu', 'Oeu012573.1' => 'oeu', 'Oeu012574.1' => 'oeu', 'Oeu025911.1' => 'oeu', 'Oeu045936.1' => 'oeu', 'Oeu049270.1' => 'oeu', 'Oeu061122.1' => 'oeu', 'Oeu061698.1' => 'oeu', 'Os01g0281000' => 'osa', 'Os01g0806200' => 'osa', 'Peaxi162Scf00003g04918' => 'pax', 'Peaxi162Scf00004g04217' => 'pax', 'Peaxi162Scf00076g00331' => 'pax', 'PGR031G3449' => 'pgr', 'PGR102G1201' => 'pgr', 'PGR119G0755' => 'pgr', 'PGSC0003DMG400008362' => 'stu', 'PGSC0003DMG400009456' => 'stu', 'Phvul.001G121900' => 'pvu', 'Phvul.001G122000' => 'pvu', 'Phvul.001G122200' => 'pvu', 'Phvul.001G122300' => 'pvu', 'Phvul.001G122600' => 'pvu', 'Phvul.006G015900' => 'pvu', 'Phvul.007G244750' => 'pvu', 'Phvul.007G244800' => 'pvu', 'Phvul.008G202600' => 'pvu', 'Potri.001G273900' => 'ptr', 'Potri.006G040000' => 'ptr', 'Potri.009G068100' => 'ptr', 'Potri.016G035900' => 'ptr', 'Pp3c16_6980' => 'ppa', 'Pp3c25_580' => 'ppa', 'Pp3c6_13990' => 'ppa', 'Prupe.4G262500' => 'ppe', 'Prupe.7G034300' => 'ppe', 'Psat0s1289g0040' => 'psa', 'Psat0s6556g0040' => 'psa', 'Psat3g079680' => 'psa', 'Psat5g191200' => 'psa', 'Psat6g016520' => 'psa', 'PSO339G0835' => 'pso', 'PSO384G1060' => 'pso', 'QL01p016690' => 'qlo', 'QL07p010669' => 'qlo', 'QL07p011228' => 'qlo', 'RcHm_v2.0_Chr5g0050291' => 'rch', 'RcHm_v2.0_Chr6g0276171' => 'rch', 'Rhsim04G0112100' => 'rsi', 'Rhsim13G0206400' => 'rsi', 'Sabra06G0027000' => 'sbr', 'Sabra09G0051200' => 'sbr', 'Sabra16G0038100' => 'sbr', 'Sabra16G0168700' => 'sbr', 'SalBow3G0287' => 'sbo', 'SalBow6G4571' => 'sbo', 'SalBow6G5777' => 'sbo', 'Sc09g0001110' => 'sci', 'Sc13g0001080' => 'sci', 'Sed0005786' => 'sed', 'Sed0006291' => 'sed', 'Sed0015456' => 'sed', 'Sed0024245' => 'sed', 'Sed0027856' => 'sed', 'SEGI_01596' => 'sgi', 'SEGI_03578' => 'sgi', 'SEGI_09649' => 'sgi', 'SEGI_11242' => 'sgi', 'SEGI_13233' => 'sgi', 'SEGI_36644' => 'sgi', 'SEGI_38379' => 'sgi', 'SEGI_38657' => 'sgi', 'SGA_v2.0_scaffold26G11419' => 'sas', 'SGA_v2.0_scaffold8G04538' => 'sas', 'SMO119G0018' => 'smo', 'SMO340G0112' => 'smo', 'Solyc10g078410.2' => 'sly', 'Solyc11g065000.2' => 'sly', 'Sopen10g029070' => 'spe', 'Sopen11g024770' => 'spe', 'Sp1g10550' => 'spa', 'Sp4g23470' => 'spa', 'TAR623G0157' => 'tar', 'TAR633G2255' => 'tar', 'THA.LOC104824398' => 'tha', 'THA.LOC104826456' => 'tha', 'Thecc.05G128500' => 'tca', 'Thecc.09G246400' => 'tca', 'Thhalv10007953m.g' => 'esa', 'Thhalv10016802m.g' => 'esa', 'TPR.G16082' => 'tpr', 'TPR.G16091' => 'tpr', 'TPR.G16416' => 'tpr', 'TPR.G24388' => 'tpr', 'TPR.G34636' => 'tpr', 'TPR.G40411' => 'tpr', 'TWI31G0759' => 'twi', 'TWI53G0375' => 'twi', 'TWI75G0745' => 'twi', 'unitig_0.g602' => 'ugi', 'unitig_90.g27490' => 'ugi', 'vmacro04044' => 'vma', 'VMungo0540G0761' => 'vmu', 'VMungo0647G0496' => 'vmu', 'VMungo0720G0011' => 'vmu', 'VMungo0720G3112' => 'vmu', 'VMungo1383G0305' => 'vmu', 'VMungo1383G0818' => 'vmu', 'VMungo1383G1429' => 'vmu', 'Zm00001eb129100' => 'zma', 'Zm00001eb150400' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002003' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002003' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002003' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002003' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D002003', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '331', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A05p02080' => 'bna', 'A06p09540' => 'bna', 'A09p64250' => 'bna', 'Aa31LG3G830' => 'aar', 'Aa31LG3G880' => 'aar', 'Aa31LG5G8940' => 'aar', 'Aa31sc1418G10' => 'aar', 'Aa31sc1418G30' => 'aar', 'Actinidia06977' => 'ach', 'Actinidia17703' => 'ach', 'Actinidia24471' => 'ach', 'Actinidia38171' => 'ach', 'Ah.04g159690' => 'amhyb', 'Ah.13g076820' => 'amhyb', 'AL4G20060' => 'aly', 'AL4G27970' => 'aly', 'AL4G39140' => 'aly', 'Aqoxy1G00375' => 'aox', 'Aqoxy2G00433' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7CMH8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC671X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCA3CT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2062V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG9DVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6ISWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0A6F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0ISQJ' => 'arhy', 'AT2G26850' => 'ath', 'AT2G32560' => 'ath', 'AT2G41170' => 'ath', 'ATR0307G065' => 'atr', 'Atru.chr1.1395' => 'acertr', 'Atru.chr3.3003' => 'acertr', 'AUR62000211' => 'cqu', 'AUR62006557' => 'cqu', 'AUR62018356' => 'cqu', 'AUR62030306' => 'cqu', 'AUR62035454' => 'cqu', 'BcaC02g12757' => 'bca', 'BcaC02g12845' => 'bca', 'BcaC02g12846' => 'bca', 'BcaNung05630' => 'bca', 'BolC4t21892H' => 'bol', 'BolC5t29874H' => 'bol', 'BolC8t52324H' => 'bol', 'BraA05t19204Z' => 'bra', 'BraA06t24144Z' => 'bra', 'BraA09t41769Z' => 'bra', 'C04p02490' => 'bna', 'C04p68800' => 'bna', 'C04p68810' => 'bna', 'C08p47860' => 'bna', 'CAN.G468.7' => 'can', 'CAN.G960.62' => 'can', 'CANSAT54G0357' => 'cansat', 'CANSAT64G1506' => 'cansat', 'CARHR126420' => 'chi', 'CARHR136260' => 'chi', 'Carub.0004s0732' => 'cru', 'Carub.0004s1390' => 'cru', 'Carub.0004s2348' => 'cru', 'Ca_06191_v3' => 'car', 'Ca_08385_v3' => 'car', 'CBR_g19731' => 'cbr', 'CBR_g6621' => 'cbr', 'CBR_g89832' => 'cbr', 'Cc01_g06240' => 'ccan', 'Cc06_g19620' => 'ccan', 'CDE02G1132' => 'cde', 'CDE04G0535' => 'cde', 'CDE08G0103' => 'cde', 'Cfa009896' => 'cfa', 'Cfa019997' => 'cfa', 'Ciclev10011910m.g' => 'ccl', 'Ciclev10015455m.g' => 'ccl', 'CiPaw.09G048600' => 'cil', 'CiPaw.10G040600' => 'cil', 'CiPaw.13G148800' => 'cil', 'CiPaw.14G111200' => 'cil', 'ClCG02G022740' => 'cla', 'ClCG10G013640' => 'cla', 'COL.COLO4_07337' => 'col', 'COL.COLO4_37459' => 'col', 'Cpa.g.sc34.181' => 'cpa', 'Cpa.g.sc92.88' => 'cpa', 'CsaV3_3G043010' => 'csa', 'CsaV3_6G038860' => 'csa', 'CSS0013608' => 'camsi', 'CSS0027882' => 'camsi', 'CSS0048089' => 'camsi', 'DCAR_002097' => 'dca', 'DCAR_013645' => 'dca', 'DCAR_016883' => 'dca', 'DCAR_020578' => 'dca', 'Dinv01679' => 'din', 'Dinv03207' => 'din', 'Dinv04577' => 'din', 'Dinv05307' => 'din', 'Dinv36153' => 'din', 'Duzib093G0829' => 'dzi', 'Duzib106G1914' => 'dzi', 'Duzib150G0616' => 'dzi', 'Duzib168G1203' => 'dzi', 'Duzib170G0954' => 'dzi', 'ECA233G2074' => 'eca', 'ECA238G1916' => 'eca', 'ECA248G0456' => 'eca', 'EL10Ac2g03500' => 'bvu', 'EL10Ac3g07248' => 'bvu', 'EL10Ac4g10097' => 'bvu', 'EL10Ac9g20681' => 'bvu', 'EL10Ac9g20682' => 'bvu', 'EL10Ac9g22559' => 'bvu', 'Eucgr.A02233' => 'egr', 'Eucgr.B03749' => 'egr', 'Eucgr.J00678' => 'egr', 'FAN11G1523' => 'fan', 'FAN15G1480' => 'fan', 'FAN16G1765' => 'fan', 'FAN20G0911' => 'fan', 'FAN21G0459' => 'fan', 'FAN24G2135' => 'fan', 'FAN25G0532' => 'fan', 'FAN25G3536' => 'fan', 'FvH4_2g14090' => 'fve', 'FvH4_3g27720' => 'fve', 'Glyma.02G278300' => 'gma', 'Glyma.03G126600' => 'gma', 'Glyma.03G126700' => 'gma', 'Glyma.03G126800' => 'gma', 'Glyma.03G126900' => 'gma', 'Glyma.07G235500' => 'gma', 'Glyma.10G102300' => 'gma', 'Glyma.14G036300' => 'gma', 'Glyma.19G129600' => 'gma', 'Glyma.20G042200' => 'gma', 'Gohir.A05G073700' => 'ghi', 'Gohir.A09G110920' => 'ghi', 'Gohir.A11G306900' => 'ghi', 'Gohir.D05G076600' => 'ghi', 'Gohir.D09G107500' => 'ghi', 'Gohir.D11G322400' => 'ghi', 'Gorai.006G125100' => 'gra', 'Gorai.007G352500' => 'gra', 'Gorai.009G077900' => 'gra', 'GSVIVG01025740001' => 'vvi', 'GSVIVG01037337001' => 'vvi', 'HanXRQChr01g0008111' => 'han', 'HanXRQChr12g0380441' => 'han', 'HanXRQChr13g0388181' => 'han', 'HanXRQChr14g0432271' => 'han', 'Haze_20236' => 'cav', 'Haze_23258' => 'cav', 'Hma1.2p1_0252F.1_g102790' => 'hma', 'Hma1.2p1_0460F.1_g157560' => 'hma', 'HPP92_001028' => 'vpl', 'HPP92_013905' => 'vpl', 'HPP92_013906' => 'vpl', 'HPP92_018979' => 'vpl', 'HPP92_019777' => 'vpl', 'Hund07425' => 'sun', 'Hund19088' => 'sun', 'Hund21964' => 'sun', 'Lalb_Chr04g0249291' => 'lal', 'Lalb_Chr10g0106151' => 'lal', 'Lalb_Chr17g0347781' => 'lal', 'Lalb_Chr17g0347811' => 'lal', 'Lalb_Chr17g0347821' => 'lal', 'Lalb_Chr22g0357521' => 'lal', 'Lj1C318T0' => 'lonja', 'Lj1g0000041' => 'lja', 'Lj1g0001568' => 'lja', 'Lj1g0002475' => 'lja', 'Lj1g0004628' => 'lja', 'Lj1g0006789' => 'lja', 'Lj1g0014198' => 'lja', 'Lj1g0014794' => 'lja', 'Lj1g0021192' => 'lja', 'Lj1g0024236' => 'lja', 'Lj2A401T9' => 'lonja', 'Lj3g0024240' => 'lja', 'Lj6g0015131' => 'lja', 'LjContig00564g0015742' => 'lja', 'Lsat_1_v5_gn_2_32541' => 'lsa', 'Lsat_1_v5_gn_5_157480' => 'lsa', 'Lsat_1_v5_gn_5_63140' => 'lsa', 'Manes.02G136800' => 'mes', 'Manes.09G003900' => 'mes', 'Mapoly0086s0017' => 'mpo', 'MBI13_g09218_MAGBIO' => 'mbi', 'MBI19_g44709_MAGBIO' => 'mbi', 'MD03G1164600' => 'mdo', 'MD11G1183200' => 'mdo', 'MD12G1096100' => 'mdo', 'MD14G1089800' => 'mdo', 'Medtr1030s0010' => 'mtr', 'Medtr3g436860' => 'mtr', 'Medtr5g089110' => 'mtr', 'Medtr6g039460' => 'mtr', 'Medtr6g039470' => 'mtr', 'Medtr7g089560' => 'mtr', 'Medtr7g089640' => 'mtr', 'Medtr7g089670' => 'mtr', 'Medtr7g089700' => 'mtr', 'Medtr7g089720' => 'mtr', 'Medtr7g089730' => 'mtr', 'MELO3C014551.2' => 'cme', 'MELO3C026603.2' => 'cme', 'Migut.D00674' => 'egut', 'Migut.J01645' => 'egut', 'Migut.N02379' => 'egut', 'MSTRG.10789' => 'ama', 'MSTRG.17637' => 'ama', 'MSTRG.19797' => 'ama', 'Nitab4.5_0000812g0070' => 'nta', 'Nitab4.5_0004588g0020' => 'nta', 'Nitab4.5_0006764g0010' => 'nta', 'Nitab4.5_0007012g0010' => 'nta', 'Nn2g14674' => 'nnu', 'Nn7g36810' => 'nnu', 'Oeu005203.2' => 'oeu', 'Oeu012573.1' => 'oeu', 'Oeu012574.1' => 'oeu', 'Oeu025911.1' => 'oeu', 'Oeu045936.1' => 'oeu', 'Oeu049270.1' => 'oeu', 'Oeu061122.1' => 'oeu', 'Oeu061698.1' => 'oeu', 'Os01g0281000' => 'osa', 'Os01g0806200' => 'osa', 'Peaxi162Scf00003g04918' => 'pax', 'Peaxi162Scf00004g04217' => 'pax', 'Peaxi162Scf00076g00331' => 'pax', 'PGR031G3449' => 'pgr', 'PGR102G1201' => 'pgr', 'PGR119G0755' => 'pgr', 'PGSC0003DMG400008362' => 'stu', 'PGSC0003DMG400009456' => 'stu', 'Phvul.001G121900' => 'pvu', 'Phvul.001G122000' => 'pvu', 'Phvul.001G122200' => 'pvu', 'Phvul.001G122300' => 'pvu', 'Phvul.001G122600' => 'pvu', 'Phvul.006G015900' => 'pvu', 'Phvul.007G244750' => 'pvu', 'Phvul.007G244800' => 'pvu', 'Phvul.008G202600' => 'pvu', 'Potri.001G273900' => 'ptr', 'Potri.006G040000' => 'ptr', 'Potri.009G068100' => 'ptr', 'Potri.016G035900' => 'ptr', 'Pp3c16_6980' => 'ppa', 'Pp3c25_580' => 'ppa', 'Pp3c6_13990' => 'ppa', 'Prupe.4G262500' => 'ppe', 'Prupe.7G034300' => 'ppe', 'Psat0s1289g0040' => 'psa', 'Psat0s6556g0040' => 'psa', 'Psat3g079680' => 'psa', 'Psat5g191200' => 'psa', 'Psat6g016520' => 'psa', 'PSO339G0835' => 'pso', 'PSO384G1060' => 'pso', 'QL01p016690' => 'qlo', 'QL07p010669' => 'qlo', 'QL07p011228' => 'qlo', 'RcHm_v2.0_Chr5g0050291' => 'rch', 'RcHm_v2.0_Chr6g0276171' => 'rch', 'Rhsim04G0112100' => 'rsi', 'Rhsim13G0206400' => 'rsi', 'Sabra06G0027000' => 'sbr', 'Sabra09G0051200' => 'sbr', 'Sabra16G0038100' => 'sbr', 'Sabra16G0168700' => 'sbr', 'SalBow3G0287' => 'sbo', 'SalBow6G4571' => 'sbo', 'SalBow6G5777' => 'sbo', 'Sc09g0001110' => 'sci', 'Sc13g0001080' => 'sci', 'Sed0005786' => 'sed', 'Sed0006291' => 'sed', 'Sed0015456' => 'sed', 'Sed0024245' => 'sed', 'Sed0027856' => 'sed', 'SEGI_01596' => 'sgi', 'SEGI_03578' => 'sgi', 'SEGI_09649' => 'sgi', 'SEGI_11242' => 'sgi', 'SEGI_13233' => 'sgi', 'SEGI_36644' => 'sgi', 'SEGI_38379' => 'sgi', 'SEGI_38657' => 'sgi', 'SGA_v2.0_scaffold26G11419' => 'sas', 'SGA_v2.0_scaffold8G04538' => 'sas', 'SMO119G0018' => 'smo', 'SMO340G0112' => 'smo', 'Solyc10g078410.2' => 'sly', 'Solyc11g065000.2' => 'sly', 'Sopen10g029070' => 'spe', 'Sopen11g024770' => 'spe', 'Sp1g10550' => 'spa', 'Sp4g23470' => 'spa', 'TAR623G0157' => 'tar', 'TAR633G2255' => 'tar', 'THA.LOC104824398' => 'tha', 'THA.LOC104826456' => 'tha', 'Thecc.05G128500' => 'tca', 'Thecc.09G246400' => 'tca', 'Thhalv10007953m.g' => 'esa', 'Thhalv10016802m.g' => 'esa', 'TPR.G16082' => 'tpr', 'TPR.G16091' => 'tpr', 'TPR.G16416' => 'tpr', 'TPR.G24388' => 'tpr', 'TPR.G34636' => 'tpr', 'TPR.G40411' => 'tpr', 'TWI31G0759' => 'twi', 'TWI53G0375' => 'twi', 'TWI75G0745' => 'twi', 'unitig_0.g602' => 'ugi', 'unitig_90.g27490' => 'ugi', 'vmacro04044' => 'vma', 'VMungo0540G0761' => 'vmu', 'VMungo0647G0496' => 'vmu', 'VMungo0720G0011' => 'vmu', 'VMungo0720G3112' => 'vmu', 'VMungo1383G0305' => 'vmu', 'VMungo1383G0818' => 'vmu', 'VMungo1383G1429' => 'vmu', 'Zm00001eb129100' => 'zma', 'Zm00001eb150400' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D002003', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D002003' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D002003', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '331', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002003' ) ), 'genes' => array( 'A05p02080' => 'bna', 'A06p09540' => 'bna', 'A09p64250' => 'bna', 'Aa31LG3G830' => 'aar', 'Aa31LG3G880' => 'aar', 'Aa31LG5G8940' => 'aar', 'Aa31sc1418G10' => 'aar', 'Aa31sc1418G30' => 'aar', 'Actinidia06977' => 'ach', 'Actinidia17703' => 'ach', 'Actinidia24471' => 'ach', 'Actinidia38171' => 'ach', 'Ah.04g159690' => 'amhyb', 'Ah.13g076820' => 'amhyb', 'AL4G20060' => 'aly', 'AL4G27970' => 'aly', 'AL4G39140' => 'aly', 'Aqoxy1G00375' => 'aox', 'Aqoxy2G00433' => 'aox', 'arahy.Tifrunner.gnm1.ann1.7CMH8M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DC671X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FCA3CT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H2062V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KG9DVM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P6ISWJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U0A6F2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W0ISQJ' => 'arhy', 'AT2G26850' => 'ath', 'AT2G32560' => 'ath', 'AT2G41170' => 'ath', 'ATR0307G065' => 'atr', 'Atru.chr1.1395' => 'acertr', 'Atru.chr3.3003' => 'acertr', 'AUR62000211' => 'cqu', 'AUR62006557' => 'cqu', 'AUR62018356' => 'cqu', 'AUR62030306' => 'cqu', 'AUR62035454' => 'cqu', 'BcaC02g12757' => 'bca', 'BcaC02g12845' => 'bca', 'BcaC02g12846' => 'bca', 'BcaNung05630' => 'bca', 'BolC4t21892H' => 'bol', 'BolC5t29874H' => 'bol', 'BolC8t52324H' => 'bol', 'BraA05t19204Z' => 'bra', 'BraA06t24144Z' => 'bra', 'BraA09t41769Z' => 'bra', 'C04p02490' => 'bna', 'C04p68800' => 'bna', 'C04p68810' => 'bna', 'C08p47860' => 'bna', 'CAN.G468.7' => 'can', 'CAN.G960.62' => 'can', 'CANSAT54G0357' => 'cansat', 'CANSAT64G1506' => 'cansat', 'CARHR126420' => 'chi', 'CARHR136260' => 'chi', 'Carub.0004s0732' => 'cru', 'Carub.0004s1390' => 'cru', 'Carub.0004s2348' => 'cru', 'Ca_06191_v3' => 'car', 'Ca_08385_v3' => 'car', 'CBR_g19731' => 'cbr', 'CBR_g6621' => 'cbr', 'CBR_g89832' => 'cbr', 'Cc01_g06240' => 'ccan', 'Cc06_g19620' => 'ccan', 'CDE02G1132' => 'cde', 'CDE04G0535' => 'cde', 'CDE08G0103' => 'cde', 'Cfa009896' => 'cfa', 'Cfa019997' => 'cfa', 'Ciclev10011910m.g' => 'ccl', 'Ciclev10015455m.g' => 'ccl', 'CiPaw.09G048600' => 'cil', 'CiPaw.10G040600' => 'cil', 'CiPaw.13G148800' => 'cil', 'CiPaw.14G111200' => 'cil', 'ClCG02G022740' => 'cla', 'ClCG10G013640' => 'cla', 'COL.COLO4_07337' => 'col', 'COL.COLO4_37459' => 'col', 'Cpa.g.sc34.181' => 'cpa', 'Cpa.g.sc92.88' => 'cpa', 'CsaV3_3G043010' => 'csa', 'CsaV3_6G038860' => 'csa', 'CSS0013608' => 'camsi', 'CSS0027882' => 'camsi', 'CSS0048089' => 'camsi', 'DCAR_002097' => 'dca', 'DCAR_013645' => 'dca', 'DCAR_016883' => 'dca', 'DCAR_020578' => 'dca', 'Dinv01679' => 'din', 'Dinv03207' => 'din', 'Dinv04577' => 'din', 'Dinv05307' => 'din', 'Dinv36153' => 'din', 'Duzib093G0829' => 'dzi', 'Duzib106G1914' => 'dzi', 'Duzib150G0616' => 'dzi', 'Duzib168G1203' => 'dzi', 'Duzib170G0954' => 'dzi', 'ECA233G2074' => 'eca', 'ECA238G1916' => 'eca', 'ECA248G0456' => 'eca', 'EL10Ac2g03500' => 'bvu', 'EL10Ac3g07248' => 'bvu', 'EL10Ac4g10097' => 'bvu', 'EL10Ac9g20681' => 'bvu', 'EL10Ac9g20682' => 'bvu', 'EL10Ac9g22559' => 'bvu', 'Eucgr.A02233' => 'egr', 'Eucgr.B03749' => 'egr', 'Eucgr.J00678' => 'egr', 'FAN11G1523' => 'fan', 'FAN15G1480' => 'fan', 'FAN16G1765' => 'fan', 'FAN20G0911' => 'fan', 'FAN21G0459' => 'fan', 'FAN24G2135' => 'fan', 'FAN25G0532' => 'fan', 'FAN25G3536' => 'fan', 'FvH4_2g14090' => 'fve', 'FvH4_3g27720' => 'fve', 'Glyma.02G278300' => 'gma', 'Glyma.03G126600' => 'gma', 'Glyma.03G126700' => 'gma', 'Glyma.03G126800' => 'gma', 'Glyma.03G126900' => 'gma', 'Glyma.07G235500' => 'gma', 'Glyma.10G102300' => 'gma', 'Glyma.14G036300' => 'gma', 'Glyma.19G129600' => 'gma', 'Glyma.20G042200' => 'gma', 'Gohir.A05G073700' => 'ghi', 'Gohir.A09G110920' => 'ghi', 'Gohir.A11G306900' => 'ghi', 'Gohir.D05G076600' => 'ghi', 'Gohir.D09G107500' => 'ghi', 'Gohir.D11G322400' => 'ghi', 'Gorai.006G125100' => 'gra', 'Gorai.007G352500' => 'gra', 'Gorai.009G077900' => 'gra', 'GSVIVG01025740001' => 'vvi', 'GSVIVG01037337001' => 'vvi', 'HanXRQChr01g0008111' => 'han', 'HanXRQChr12g0380441' => 'han', 'HanXRQChr13g0388181' => 'han', 'HanXRQChr14g0432271' => 'han', 'Haze_20236' => 'cav', 'Haze_23258' => 'cav', 'Hma1.2p1_0252F.1_g102790' => 'hma', 'Hma1.2p1_0460F.1_g157560' => 'hma', 'HPP92_001028' => 'vpl', 'HPP92_013905' => 'vpl', 'HPP92_013906' => 'vpl', 'HPP92_018979' => 'vpl', 'HPP92_019777' => 'vpl', 'Hund07425' => 'sun', 'Hund19088' => 'sun', 'Hund21964' => 'sun', 'Lalb_Chr04g0249291' => 'lal', 'Lalb_Chr10g0106151' => 'lal', 'Lalb_Chr17g0347781' => 'lal', 'Lalb_Chr17g0347811' => 'lal', 'Lalb_Chr17g0347821' => 'lal', 'Lalb_Chr22g0357521' => 'lal', 'Lj1C318T0' => 'lonja', 'Lj1g0000041' => 'lja', 'Lj1g0001568' => 'lja', 'Lj1g0002475' => 'lja', 'Lj1g0004628' => 'lja', 'Lj1g0006789' => 'lja', 'Lj1g0014198' => 'lja', 'Lj1g0014794' => 'lja', 'Lj1g0021192' => 'lja', 'Lj1g0024236' => 'lja', 'Lj2A401T9' => 'lonja', 'Lj3g0024240' => 'lja', 'Lj6g0015131' => 'lja', 'LjContig00564g0015742' => 'lja', 'Lsat_1_v5_gn_2_32541' => 'lsa', 'Lsat_1_v5_gn_5_157480' => 'lsa', 'Lsat_1_v5_gn_5_63140' => 'lsa', 'Manes.02G136800' => 'mes', 'Manes.09G003900' => 'mes', 'Mapoly0086s0017' => 'mpo', 'MBI13_g09218_MAGBIO' => 'mbi', 'MBI19_g44709_MAGBIO' => 'mbi', 'MD03G1164600' => 'mdo', 'MD11G1183200' => 'mdo', 'MD12G1096100' => 'mdo', 'MD14G1089800' => 'mdo', 'Medtr1030s0010' => 'mtr', 'Medtr3g436860' => 'mtr', 'Medtr5g089110' => 'mtr', 'Medtr6g039460' => 'mtr', 'Medtr6g039470' => 'mtr', 'Medtr7g089560' => 'mtr', 'Medtr7g089640' => 'mtr', 'Medtr7g089670' => 'mtr', 'Medtr7g089700' => 'mtr', 'Medtr7g089720' => 'mtr', 'Medtr7g089730' => 'mtr', 'MELO3C014551.2' => 'cme', 'MELO3C026603.2' => 'cme', 'Migut.D00674' => 'egut', 'Migut.J01645' => 'egut', 'Migut.N02379' => 'egut', 'MSTRG.10789' => 'ama', 'MSTRG.17637' => 'ama', 'MSTRG.19797' => 'ama', 'Nitab4.5_0000812g0070' => 'nta', 'Nitab4.5_0004588g0020' => 'nta', 'Nitab4.5_0006764g0010' => 'nta', 'Nitab4.5_0007012g0010' => 'nta', 'Nn2g14674' => 'nnu', 'Nn7g36810' => 'nnu', 'Oeu005203.2' => 'oeu', 'Oeu012573.1' => 'oeu', 'Oeu012574.1' => 'oeu', 'Oeu025911.1' => 'oeu', 'Oeu045936.1' => 'oeu', 'Oeu049270.1' => 'oeu', 'Oeu061122.1' => 'oeu', 'Oeu061698.1' => 'oeu', 'Os01g0281000' => 'osa', 'Os01g0806200' => 'osa', 'Peaxi162Scf00003g04918' => 'pax', 'Peaxi162Scf00004g04217' => 'pax', 'Peaxi162Scf00076g00331' => 'pax', 'PGR031G3449' => 'pgr', 'PGR102G1201' => 'pgr', 'PGR119G0755' => 'pgr', 'PGSC0003DMG400008362' => 'stu', 'PGSC0003DMG400009456' => 'stu', 'Phvul.001G121900' => 'pvu', 'Phvul.001G122000' => 'pvu', 'Phvul.001G122200' => 'pvu', 'Phvul.001G122300' => 'pvu', 'Phvul.001G122600' => 'pvu', 'Phvul.006G015900' => 'pvu', 'Phvul.007G244750' => 'pvu', 'Phvul.007G244800' => 'pvu', 'Phvul.008G202600' => 'pvu', 'Potri.001G273900' => 'ptr', 'Potri.006G040000' => 'ptr', 'Potri.009G068100' => 'ptr', 'Potri.016G035900' => 'ptr', 'Pp3c16_6980' => 'ppa', 'Pp3c25_580' => 'ppa', 'Pp3c6_13990' => 'ppa', 'Prupe.4G262500' => 'ppe', 'Prupe.7G034300' => 'ppe', 'Psat0s1289g0040' => 'psa', 'Psat0s6556g0040' => 'psa', 'Psat3g079680' => 'psa', 'Psat5g191200' => 'psa', 'Psat6g016520' => 'psa', 'PSO339G0835' => 'pso', 'PSO384G1060' => 'pso', 'QL01p016690' => 'qlo', 'QL07p010669' => 'qlo', 'QL07p011228' => 'qlo', 'RcHm_v2.0_Chr5g0050291' => 'rch', 'RcHm_v2.0_Chr6g0276171' => 'rch', 'Rhsim04G0112100' => 'rsi', 'Rhsim13G0206400' => 'rsi', 'Sabra06G0027000' => 'sbr', 'Sabra09G0051200' => 'sbr', 'Sabra16G0038100' => 'sbr', 'Sabra16G0168700' => 'sbr', 'SalBow3G0287' => 'sbo', 'SalBow6G4571' => 'sbo', 'SalBow6G5777' => 'sbo', 'Sc09g0001110' => 'sci', 'Sc13g0001080' => 'sci', 'Sed0005786' => 'sed', 'Sed0006291' => 'sed', 'Sed0015456' => 'sed', 'Sed0024245' => 'sed', 'Sed0027856' => 'sed', 'SEGI_01596' => 'sgi', 'SEGI_03578' => 'sgi', 'SEGI_09649' => 'sgi', 'SEGI_11242' => 'sgi', 'SEGI_13233' => 'sgi', 'SEGI_36644' => 'sgi', 'SEGI_38379' => 'sgi', 'SEGI_38657' => 'sgi', 'SGA_v2.0_scaffold26G11419' => 'sas', 'SGA_v2.0_scaffold8G04538' => 'sas', 'SMO119G0018' => 'smo', 'SMO340G0112' => 'smo', 'Solyc10g078410.2' => 'sly', 'Solyc11g065000.2' => 'sly', 'Sopen10g029070' => 'spe', 'Sopen11g024770' => 'spe', 'Sp1g10550' => 'spa', 'Sp4g23470' => 'spa', 'TAR623G0157' => 'tar', 'TAR633G2255' => 'tar', 'THA.LOC104824398' => 'tha', 'THA.LOC104826456' => 'tha', 'Thecc.05G128500' => 'tca', 'Thecc.09G246400' => 'tca', 'Thhalv10007953m.g' => 'esa', 'Thhalv10016802m.g' => 'esa', 'TPR.G16082' => 'tpr', 'TPR.G16091' => 'tpr', 'TPR.G16416' => 'tpr', 'TPR.G24388' => 'tpr', 'TPR.G34636' => 'tpr', 'TPR.G40411' => 'tpr', 'TWI31G0759' => 'twi', 'TWI53G0375' => 'twi', 'TWI75G0745' => 'twi', 'unitig_0.g602' => 'ugi', 'unitig_90.g27490' => 'ugi', 'vmacro04044' => 'vma', 'VMungo0540G0761' => 'vmu', 'VMungo0647G0496' => 'vmu', 'VMungo0720G0011' => 'vmu', 'VMungo0720G3112' => 'vmu', 'VMungo1383G0305' => 'vmu', 'VMungo1383G0818' => 'vmu', 'VMungo1383G1429' => 'vmu', 'Zm00001eb129100' => 'zma', 'Zm00001eb150400' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D002003' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D002003' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D002003' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D002003' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151