Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p02080 Brassica napus
A06p09540 Brassica napus
A09p64250 Brassica napus
Aa31LG3G830 Aethionema arabicum
Aa31LG3G880 Aethionema arabicum
Aa31LG5G8940 Aethionema arabicum
Aa31sc1418G10 Aethionema arabicum
Aa31sc1418G30 Aethionema arabicum
Actinidia06977 Actinidia chinensis
Actinidia17703 Actinidia chinensis
Actinidia24471 Actinidia chinensis
Actinidia38171 Actinidia chinensis
Ah.04g159690 Amaranthus hybridus
Ah.13g076820 Amaranthus hybridus
AL4G20060 Arabidopsis lyrata
AL4G27970 Arabidopsis lyrata
AL4G39140 Arabidopsis lyrata
Aqoxy1G00375 Aquilegia oxysepala
Aqoxy2G00433 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7CMH8M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DC671X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FCA3CT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H2062V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KG9DVM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P6ISWJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U0A6F2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W0ISQJ Arachis hypogaea
AT2G26850 Arabidopsis thaliana
AT2G32560 Arabidopsis thaliana
AT2G41170 Arabidopsis thaliana
ATR0307G065 Amborella trichopoda
Atru.chr1.1395 Acer truncatum
Atru.chr3.3003 Acer truncatum
AUR62000211 Chenopodium quinoa
AUR62006557 Chenopodium quinoa
AUR62018356 Chenopodium quinoa
AUR62030306 Chenopodium quinoa
AUR62035454 Chenopodium quinoa
BcaC02g12757 Brassica carinata
BcaC02g12845 Brassica carinata
BcaC02g12846 Brassica carinata
BcaNung05630 Brassica carinata
BolC4t21892H Brassica oleracea
BolC5t29874H Brassica oleracea
BolC8t52324H Brassica oleracea
BraA05t19204Z Brassica rapa
BraA06t24144Z Brassica rapa
BraA09t41769Z Brassica rapa
C04p02490 Brassica napus
C04p68800 Brassica napus
C04p68810 Brassica napus
C08p47860 Brassica napus
CAN.G468.7 Capsicum annuum
CAN.G960.62 Capsicum annuum
CANSAT54G0357 Cannabis sativa
CANSAT64G1506 Cannabis sativa
CARHR126420 Cardamine hirsuta
CARHR136260 Cardamine hirsuta
Carub.0004s0732 Capsella rubella
Carub.0004s1390 Capsella rubella
Carub.0004s2348 Capsella rubella
Ca_06191_v3 Cicer arietinum L.
Ca_08385_v3 Cicer arietinum L.
CBR_g19731 Chara braunii
CBR_g6621 Chara braunii
CBR_g89832 Chara braunii
Cc01_g06240 Coffea canephora
Cc06_g19620 Coffea canephora
CDE02G1132 Ceratophyllum demersum
CDE04G0535 Ceratophyllum demersum
CDE08G0103 Ceratophyllum demersum
Cfa009896 Carpinus fangiana
Cfa019997 Carpinus fangiana
Ciclev10011910m.g Citrus clementina
Ciclev10015455m.g Citrus clementina
CiPaw.09G048600 Carya illinoinensis
CiPaw.10G040600 Carya illinoinensis
CiPaw.13G148800 Carya illinoinensis
CiPaw.14G111200 Carya illinoinensis
ClCG02G022740 Citrullus lanatus
ClCG10G013640 Citrullus lanatus
COL.COLO4_07337 Corchorus olitorius
COL.COLO4_37459 Corchorus olitorius
Cpa.g.sc34.181 Carica papaya
Cpa.g.sc92.88 Carica papaya
CsaV3_3G043010 Cucumis sativus L.
CsaV3_6G038860 Cucumis sativus L.
CSS0013608 Camellia sinensis var. sinensis
CSS0027882 Camellia sinensis var. sinensis
CSS0048089 Camellia sinensis var. sinensis
DCAR_002097 Daucus carota
DCAR_013645 Daucus carota
DCAR_016883 Daucus carota
DCAR_020578 Daucus carota
Dinv01679 Davidia involucrata
Dinv03207 Davidia involucrata
Dinv04577 Davidia involucrata
Dinv05307 Davidia involucrata
Dinv36153 Davidia involucrata
Duzib093G0829 Durio zibethinus
Duzib106G1914 Durio zibethinus
Duzib150G0616 Durio zibethinus
Duzib168G1203 Durio zibethinus
Duzib170G0954 Durio zibethinus
ECA233G2074 Erigeron canadensis
ECA238G1916 Erigeron canadensis
ECA248G0456 Erigeron canadensis
EL10Ac2g03500 Beta vulgaris
EL10Ac3g07248 Beta vulgaris
EL10Ac4g10097 Beta vulgaris
EL10Ac9g20681 Beta vulgaris
EL10Ac9g20682 Beta vulgaris
EL10Ac9g22559 Beta vulgaris
Eucgr.A02233 Eucalyptus grandis
Eucgr.B03749 Eucalyptus grandis
Eucgr.J00678 Eucalyptus grandis
FAN11G1523 Fragaria x ananassa
FAN15G1480 Fragaria x ananassa
FAN16G1765 Fragaria x ananassa
FAN20G0911 Fragaria x ananassa
FAN21G0459 Fragaria x ananassa
FAN24G2135 Fragaria x ananassa
FAN25G0532 Fragaria x ananassa
FAN25G3536 Fragaria x ananassa
FvH4_2g14090 Fragaria vesca
FvH4_3g27720 Fragaria vesca
Glyma.02G278300 Glycine max
Glyma.03G126600 Glycine max
Glyma.03G126700 Glycine max
Glyma.03G126800 Glycine max
Glyma.03G126900 Glycine max
Glyma.07G235500 Glycine max
Glyma.10G102300 Glycine max
Glyma.14G036300 Glycine max
Glyma.19G129600 Glycine max
Glyma.20G042200 Glycine max
Gohir.A05G073700 Gossypium hirsutum
Gohir.A09G110920 Gossypium hirsutum
Gohir.A11G306900 Gossypium hirsutum
Gohir.D05G076600 Gossypium hirsutum
Gohir.D09G107500 Gossypium hirsutum
Gohir.D11G322400 Gossypium hirsutum
Gorai.006G125100 Gossypium raimondii
Gorai.007G352500 Gossypium raimondii
Gorai.009G077900 Gossypium raimondii
GSVIVG01025740001 Vitis vinifera
GSVIVG01037337001 Vitis vinifera
HanXRQChr01g0008111 Helianthus annuus
HanXRQChr12g0380441 Helianthus annuus
HanXRQChr13g0388181 Helianthus annuus
HanXRQChr14g0432271 Helianthus annuus
Haze_20236 Corylus avellana
Haze_23258 Corylus avellana
Hma1.2p1_0252F.1_g102790 Hydrangea macrophylla
Hma1.2p1_0460F.1_g157560 Hydrangea macrophylla
HPP92_001028 Vanilla planifolia
HPP92_013905 Vanilla planifolia
HPP92_013906 Vanilla planifolia
HPP92_018979 Vanilla planifolia
HPP92_019777 Vanilla planifolia
Hund07425 Selenicereus undatus
Hund19088 Selenicereus undatus
Hund21964 Selenicereus undatus
Lalb_Chr04g0249291 Lupinus albus
Lalb_Chr10g0106151 Lupinus albus
Lalb_Chr17g0347781 Lupinus albus
Lalb_Chr17g0347811 Lupinus albus
Lalb_Chr17g0347821 Lupinus albus
Lalb_Chr22g0357521 Lupinus albus
Lj1C318T0 Lonicera japonica
Lj1g0000041 Lotus japonicus
Lj1g0001568 Lotus japonicus
Lj1g0002475 Lotus japonicus
Lj1g0004628 Lotus japonicus
Lj1g0006789 Lotus japonicus
Lj1g0014198 Lotus japonicus
Lj1g0014794 Lotus japonicus
Lj1g0021192 Lotus japonicus
Lj1g0024236 Lotus japonicus
Lj2A401T9 Lonicera japonica
Lj3g0024240 Lotus japonicus
Lj6g0015131 Lotus japonicus
LjContig00564g0015742 Lotus japonicus
Lsat_1_v5_gn_2_32541 Lactuca sativa
Lsat_1_v5_gn_5_157480 Lactuca sativa
Lsat_1_v5_gn_5_63140 Lactuca sativa
Manes.02G136800 Manihot esculenta
Manes.09G003900 Manihot esculenta
Mapoly0086s0017 Marchantia polymorpha
MBI13_g09218_MAGBIO Magnolia biondii
MBI19_g44709_MAGBIO Magnolia biondii
MD03G1164600 Malus domestica
MD11G1183200 Malus domestica
MD12G1096100 Malus domestica
MD14G1089800 Malus domestica
Medtr1030s0010 Medicago truncatula
Medtr3g436860 Medicago truncatula
Medtr5g089110 Medicago truncatula
Medtr6g039460 Medicago truncatula
Medtr6g039470 Medicago truncatula
Medtr7g089560 Medicago truncatula
Medtr7g089640 Medicago truncatula
Medtr7g089670 Medicago truncatula
Medtr7g089700 Medicago truncatula
Medtr7g089720 Medicago truncatula
Medtr7g089730 Medicago truncatula
MELO3C014551.2 Cucumis melo
MELO3C026603.2 Cucumis melo
Migut.D00674 Erythranthe guttata
Migut.J01645 Erythranthe guttata
Migut.N02379 Erythranthe guttata
MSTRG.10789 Avicennia marina
MSTRG.17637 Avicennia marina
MSTRG.19797 Avicennia marina
Nitab4.5_0000812g0070 Nicotiana tabacum
Nitab4.5_0004588g0020 Nicotiana tabacum
Nitab4.5_0006764g0010 Nicotiana tabacum
Nitab4.5_0007012g0010 Nicotiana tabacum
Nn2g14674 Nelumbo nucifera
Nn7g36810 Nelumbo nucifera
Oeu005203.2 Olea europaea
Oeu012573.1 Olea europaea
Oeu012574.1 Olea europaea
Oeu025911.1 Olea europaea
Oeu045936.1 Olea europaea
Oeu049270.1 Olea europaea
Oeu061122.1 Olea europaea
Oeu061698.1 Olea europaea
Os01g0281000 Oryza sativa ssp. japonica
Os01g0806200 Oryza sativa ssp. japonica
Peaxi162Scf00003g04918 Petunia axillaris
Peaxi162Scf00004g04217 Petunia axillaris
Peaxi162Scf00076g00331 Petunia axillaris
PGR031G3449 Punica granatum
PGR102G1201 Punica granatum
PGR119G0755 Punica granatum
PGSC0003DMG400008362 Solanum tuberosum
PGSC0003DMG400009456 Solanum tuberosum
Phvul.001G121900 Phaseolus vulgaris
Phvul.001G122000 Phaseolus vulgaris
Phvul.001G122200 Phaseolus vulgaris
Phvul.001G122300 Phaseolus vulgaris
Phvul.001G122600 Phaseolus vulgaris
Phvul.006G015900 Phaseolus vulgaris
Phvul.007G244750 Phaseolus vulgaris
Phvul.007G244800 Phaseolus vulgaris
Phvul.008G202600 Phaseolus vulgaris
Potri.001G273900 Populus trichocarpa
Potri.006G040000 Populus trichocarpa
Potri.009G068100 Populus trichocarpa
Potri.016G035900 Populus trichocarpa
Pp3c16_6980 Physcomitrium patens
Pp3c25_580 Physcomitrium patens
Pp3c6_13990 Physcomitrium patens
Prupe.4G262500 Prunus persica
Prupe.7G034300 Prunus persica
Psat0s1289g0040 Pisum sativum
Psat0s6556g0040 Pisum sativum
Psat3g079680 Pisum sativum
Psat5g191200 Pisum sativum
Psat6g016520 Pisum sativum
PSO339G0835 Papaver somniferum
PSO384G1060 Papaver somniferum
QL01p016690 Quercus lobata
QL07p010669 Quercus lobata
QL07p011228 Quercus lobata
RcHm_v2.0_Chr5g0050291 Rosa chinensis
RcHm_v2.0_Chr6g0276171 Rosa chinensis
Rhsim04G0112100 Rhododendron simsii
Rhsim13G0206400 Rhododendron simsii
Sabra06G0027000 Salix brachista
Sabra09G0051200 Salix brachista
Sabra16G0038100 Salix brachista
Sabra16G0168700 Salix brachista
SalBow3G0287 Salvia bowleyana
SalBow6G4571 Salvia bowleyana
SalBow6G5777 Salvia bowleyana
Sc09g0001110 Simmondsia chinensis
Sc13g0001080 Simmondsia chinensis
Sed0005786 Sechium edule
Sed0006291 Sechium edule
Sed0015456 Sechium edule
Sed0024245 Sechium edule
Sed0027856 Sechium edule
SEGI_01596 Sequoiadendron giganteum
SEGI_03578 Sequoiadendron giganteum
SEGI_09649 Sequoiadendron giganteum
SEGI_11242 Sequoiadendron giganteum
SEGI_13233 Sequoiadendron giganteum
SEGI_36644 Sequoiadendron giganteum
SEGI_38379 Sequoiadendron giganteum
SEGI_38657 Sequoiadendron giganteum
SGA_v2.0_scaffold26G11419 Striga asiatica
SGA_v2.0_scaffold8G04538 Striga asiatica
SMO119G0018 Selaginella moellendorffii
SMO340G0112 Selaginella moellendorffii
Solyc10g078410.2 Solanum lycopersicum
Solyc11g065000.2 Solanum lycopersicum
Sopen10g029070 Solanum pennellii
Sopen11g024770 Solanum pennellii
Sp1g10550 Schrenkiella parvula
Sp4g23470 Schrenkiella parvula
TAR623G0157 Trochodendron aralioides
TAR633G2255 Trochodendron aralioides
THA.LOC104824398 Tarenaya hassleriana
THA.LOC104826456 Tarenaya hassleriana
Thecc.05G128500 Theobroma cacao
Thecc.09G246400 Theobroma cacao
Thhalv10007953m.g Eutrema salsugineum
Thhalv10016802m.g Eutrema salsugineum
TPR.G16082 Trifolium pratense
TPR.G16091 Trifolium pratense
TPR.G16416 Trifolium pratense
TPR.G24388 Trifolium pratense
TPR.G34636 Trifolium pratense
TPR.G40411 Trifolium pratense
TWI31G0759 Tripterygium wilfordii
TWI53G0375 Tripterygium wilfordii
TWI75G0745 Tripterygium wilfordii
unitig_0.g602 Utricularia gibba
unitig_90.g27490 Utricularia gibba
vmacro04044 Vaccinium macrocarpon
VMungo0540G0761 Vigna mungo
VMungo0647G0496 Vigna mungo
VMungo0720G0011 Vigna mungo
VMungo0720G3112 Vigna mungo
VMungo1383G0305 Vigna mungo
VMungo1383G0818 Vigna mungo
VMungo1383G1429 Vigna mungo
Zm00001eb129100 Zea mays
Zm00001eb150400 Zea mays

User provided reference genes

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