Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '332', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p06380' => 'bna', 'A06p14000' => 'bna', 'A07p39350' => 'bna', 'A10p24390' => 'bna', 'Aa31LG11G15370' => 'aar', 'Aa31LG4G3660' => 'aar', 'Aa31LG7G2720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2462' => 'aag', 'Actinidia02657' => 'ach', 'Actinidia05868' => 'ach', 'Actinidia34677' => 'ach', 'Ah.11g045350' => 'amhyb', 'AL1G30290' => 'aly', 'AL2G33180' => 'aly', 'AL6G24680' => 'aly', 'Aqoxy3G04327' => 'aox', 'Aqoxy5G03213' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IEW9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.107ZNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B5LVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ZB81I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I8ZWR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8L4QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGG1CT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA1NT7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR4UTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3XDKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDLI1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW78JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1U3RA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9SC1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ7LLZ' => 'arhy', 'AT1G17940' => 'ath', 'AT1G73390' => 'ath', 'AT5G14020' => 'ath', 'ATR0124G046' => 'atr', 'ATR0582G333' => 'atr', 'Atru.chr11.50' => 'acertr', 'Atru.chr11.53' => 'acertr', 'Atru.chr6.2628' => 'acertr', 'Atru.chr9.18' => 'acertr', 'AUR62019723' => 'cqu', 'AUR62035468' => 'cqu', 'AUR62035469' => 'cqu', 'AUR62037850' => 'cqu', 'AUR62041090' => 'cqu', 'BcaB01g05314' => 'bca', 'BcaB03g15056' => 'bca', 'BcaB07g34017' => 'bca', 'BcaB07g34018' => 'bca', 'BcaC03g17499' => 'bca', 'BcaC05g25697' => 'bca', 'BcaC08g46762' => 'bca', 'BolC3t13236H' => 'bol', 'BolC5t30332H' => 'bol', 'BolC6t39796H' => 'bol', 'BolC9t59146H' => 'bol', 'BolC9t59147H' => 'bol', 'BraA03t09967Z' => 'bra', 'BraA06t24538Z' => 'bra', 'BraA07t31484Z' => 'bra', 'BraA10t44505Z' => 'bra', 'C03p07340' => 'bna', 'C05p16320' => 'bna', 'C06p47580' => 'bna', 'C09p63100' => 'bna', 'CAN.G473.81' => 'can', 'CAN.G861.32' => 'can', 'CANSAT80G0367' => 'cansat', 'CARHR018560' => 'chi', 'CARHR066440' => 'chi', 'CARHR066450' => 'chi', 'CARHR199360' => 'chi', 'Carub.0001s1764' => 'cru', 'Carub.0002s2013' => 'cru', 'Carub.0006s1221' => 'cru', 'Ca_08106_v3' => 'car', 'Ca_09929_v3' => 'car', 'Ca_09933_v3' => 'car', 'Ca_25376_v3' => 'car', 'Cc02_g29280' => 'ccan', 'CDE07G1305' => 'cde', 'CDE07G1519' => 'cde', 'Cfa007184' => 'cfa', 'Cfa017804' => 'cfa', 'Ciclev10015370m.g' => 'ccl', 'Ciclev10015430m.g' => 'ccl', 'Ciclev10021034m.g' => 'ccl', 'CiPaw.03G003700' => 'cil', 'CiPaw.15G107400' => 'cil', 'ClCG01G014730' => 'cla', 'ClCG05G013760' => 'cla', 'COL.COLO4_13330' => 'col', 'COL.COLO4_22327' => 'col', 'COL.COLO4_22328' => 'col', 'COL.COLO4_24077' => 'col', 'COL.COLO4_33136' => 'col', 'Cpa.g.sc168.4' => 'cpa', 'Cpa.g.sc168.6' => 'cpa', 'Cpa.g.sc257.5' => 'cpa', 'Cpa.g.sc70.93' => 'cpa', 'CsaV3_1G007600' => 'csa', 'CsaV3_3G026360' => 'csa', 'CSS0010361' => 'camsi', 'CSS0032729' => 'camsi', 'CSS0034595' => 'camsi', 'DCAR_000945' => 'dca', 'DCAR_011407' => 'dca', 'DCAR_014480' => 'dca', 'DCAR_014753' => 'dca', 'Dinv03500' => 'din', 'Dinv03505' => 'din', 'Dinv11734' => 'din', 'Dinv25626' => 'din', 'Duzib084G0350' => 'dzi', 'Duzib132G1176' => 'dzi', 'Duzib147G0925' => 'dzi', 'ECA238G2366' => 'eca', 'ECA246G2407' => 'eca', 'EL10Ac2g03311' => 'bvu', 'EL10Ac6g13376' => 'bvu', 'Eucgr.H00656' => 'egr', 'Eucgr.H03368' => 'egr', 'Eucgr.K02328' => 'egr', 'FAN02G0478' => 'fan', 'FAN02G4394' => 'fan', 'FAN04G1098' => 'fan', 'FAN05G4316' => 'fan', 'FAN08G0392' => 'fan', 'FAN13G1325' => 'fan', 'FAN14G3452' => 'fan', 'FAN18G1139' => 'fan', 'FvH4_5g18540' => 'fve', 'FvH4_6g54080' => 'fve', 'Glyma.09G161900' => 'gma', 'Glyma.10G173800' => 'gma', 'Glyma.16G051000' => 'gma', 'Glyma.16G211100' => 'gma', 'Glyma.19G099600' => 'gma', 'Glyma.20G216500' => 'gma', 'Gohir.A03G090500' => 'ghi', 'Gohir.A03G167700' => 'ghi', 'Gohir.A07G231000' => 'ghi', 'Gohir.A12G272400' => 'ghi', 'Gohir.D02G118500' => 'ghi', 'Gohir.D02G190800' => 'ghi', 'Gohir.D07G238200' => 'ghi', 'Gohir.D12G273100' => 'ghi', 'Gorai.001G274000' => 'gra', 'Gorai.005G135300' => 'gra', 'Gorai.005G213600' => 'gra', 'Gorai.008G293500' => 'gra', 'GSVIVG01024250001' => 'vvi', 'GSVIVG01033018001' => 'vvi', 'GSVIVG01034360001' => 'vvi', 'HanXRQChr03g0093091' => 'han', 'HanXRQChr06g0183511' => 'han', 'HanXRQChr08g0221511' => 'han', 'HanXRQChr13g0397011' => 'han', 'HanXRQChr15g0475801' => 'han', 'HanXRQChr16g0528601' => 'han', 'HanXRQChr17g0551571' => 'han', 'Haze_14925' => 'cav', 'Haze_18409' => 'cav', 'Hma1.2p1_0248F.1_g102040' => 'hma', 'Hma1.2p1_0816F.1_g222960' => 'hma', 'HPP92_014762' => 'vpl', 'HPP92_015005' => 'vpl', 'Hund12857' => 'sun', 'Hund12858' => 'sun', 'Hund13063' => 'sun', 'Hund29415' => 'sun', 'Hund29416' => 'sun', 'Lalb_Chr06g0168661' => 'lal', 'Lalb_Chr14g0363831' => 'lal', 'Lalb_Chr14g0370151' => 'lal', 'Lalb_Chr21g0311681' => 'lal', 'Lj1g0022123' => 'lja', 'Lj2g0017850' => 'lja', 'Lj5A168T93' => 'lonja', 'Lj5g0026773' => 'lja', 'Lj7C614T14' => 'lonja', 'Lj9A411G75' => 'lonja', 'Lsat_1_v5_gn_0_11320' => 'lsa', 'Lsat_1_v5_gn_2_19660' => 'lsa', 'Manes.02G220600' => 'mes', 'Manes.04G090920' => 'mes', 'Manes.04G091001' => 'mes', 'Manes.04G161500' => 'mes', 'Manes.11G079200' => 'mes', 'MBI03_g13445_MAGBIO' => 'mbi', 'MBI06_g12549_MAGBIO' => 'mbi', 'MD06G1240300' => 'mdo', 'MD09G1005600' => 'mdo', 'MD09G1124500' => 'mdo', 'MD10G1018100' => 'mdo', 'MD14G1246500' => 'mdo', 'MD17G1009700' => 'mdo', 'Medtr1g077580' => 'mtr', 'Medtr6g077430' => 'mtr', 'Medtr6g077490' => 'mtr', 'Medtr7g083110' => 'mtr', 'MELO3C002179.2' => 'cme', 'MELO3C014936.2' => 'cme', 'Migut.F00024' => 'egut', 'Migut.O00277' => 'egut', 'MSTRG.11563' => 'ama', 'MSTRG.3053' => 'ama', 'MSTRG.9716' => 'ama', 'Nitab4.5_0000162g0010' => 'nta', 'Nitab4.5_0001495g0060' => 'nta', 'Nitab4.5_0003318g0170' => 'nta', 'Nitab4.5_0007717g0070' => 'nta', 'Nn3g16335' => 'nnu', 'Nn3g18551' => 'nnu', 'Nn4g25177' => 'nnu', 'Oeu020408.1' => 'oeu', 'Oeu057514.3' => 'oeu', 'Oeu062063.1' => 'oeu', 'Os02g0828100' => 'osa', 'Os04g0527400' => 'osa', 'Os11g0514800' => 'osa', 'Peaxi162Scf00171g00132' => 'pax', 'Peaxi162Scf00420g00735' => 'pax', 'Peaxi162Scf01026g00019' => 'pax', 'PGR044G0536' => 'pgr', 'PGR083G0518' => 'pgr', 'PGR083G1912' => 'pgr', 'PGSC0003DMG400015281' => 'stu', 'PGSC0003DMG400018727' => 'stu', 'PGSC0003DMG400020218' => 'stu', 'Phvul.001G087500' => 'pvu', 'Phvul.004G137200' => 'pvu', 'Phvul.L006201' => 'pvu', 'Potri.001G323600' => 'ptr', 'Potri.004G067400' => 'ptr', 'Potri.017G062000' => 'ptr', 'Potri.017G154200' => 'ptr', 'Pp3c10_2740' => 'ppa', 'Pp3c14_9570' => 'ppa', 'Pp3c16_12200' => 'ppa', 'Pp3c2_19570' => 'ppa', 'Pp3c5_5280' => 'ppa', 'Pp3c6_25010' => 'ppa', 'Prupe.3G311400' => 'ppe', 'Prupe.5G244800' => 'ppe', 'Psat3g096040' => 'psa', 'Psat3g187560' => 'psa', 'Psat6g054560' => 'psa', 'PSO017G2277' => 'pso', 'PSO017G2498' => 'pso', 'PSO063G3302' => 'pso', 'PSO170G5286' => 'pso', 'PSO478G0040' => 'pso', 'PSO782G1958' => 'pso', 'QL01p000420' => 'qlo', 'QL01p011503' => 'qlo', 'QL02p070193' => 'qlo', 'QL10p033816' => 'qlo', 'QL10p033825' => 'qlo', 'RcHm_v2.0_Chr2g0176271' => 'rch', 'RcHm_v2.0_Chr7g0176971' => 'rch', 'Rhsim08G0125200' => 'rsi', 'Rhsim10G0002600' => 'rsi', 'Sabra04G0045200' => 'sbr', 'Sabra16G0206300' => 'sbr', 'Sabra17G0056100' => 'sbr', 'Sabra17G0126300' => 'sbr', 'SalBow2G0107' => 'sbo', 'SalBow2G1895' => 'sbo', 'SalBow2G2867' => 'sbo', 'SalBow3G2746' => 'sbo', 'SalBow4G1097' => 'sbo', 'SalBow4G2816' => 'sbo', 'SalBow5G3524' => 'sbo', 'SalBow5G4966' => 'sbo', 'SalBow6G3115' => 'sbo', 'SalBow8G0316' => 'sbo', 'SalBow8G2722' => 'sbo', 'Sc10g0006310' => 'sci', 'Sc10g0006380' => 'sci', 'Sed0006320' => 'sed', 'Sed0011987' => 'sed', 'Sed0016481' => 'sed', 'SEGI_23745' => 'sgi', 'SGA_v2.0_scaffold253G45159' => 'sas', 'SGA_v2.0_scaffold25G10732' => 'sas', 'SHI21153' => 'shi', 'SMO334G0092' => 'smo', 'SMO356G0058' => 'smo', 'Solyc02g093960.3' => 'sly', 'Solyc03g019950.3' => 'sly', 'Sopen02g038610' => 'spe', 'Sopen03g029670' => 'spe', 'Sp1g16010' => 'spa', 'Sp5g28320' => 'spa', 'Sp6g29980' => 'spa', 'TAR371G0948' => 'tar', 'TAR622G0095' => 'tar', 'TAR629G0755' => 'tar', 'TAR629G2546' => 'tar', 'THA.LOC104802368' => 'tha', 'THA.LOC104813932' => 'tha', 'Thecc.02G152700' => 'tca', 'Thecc.03G069500' => 'tca', 'Thecc.04G043700' => 'tca', 'Thhalv10007785m.g' => 'esa', 'Thhalv10013631m.g' => 'esa', 'Thhalv10018609m.g' => 'esa', 'TPR.G18958' => 'tpr', 'TPR.G24687' => 'tpr', 'TPR.G28464' => 'tpr', 'TPR.G484' => 'tpr', 'TPR.G8867' => 'tpr', 'TWI15G0478' => 'twi', 'TWI34G0708' => 'twi', 'TWI60G0804' => 'twi', 'TWI74G1485' => 'twi', 'TWI81G0016' => 'twi', 'unitig_22.g5319' => 'ugi', 'vmacro17749' => 'vma', 'vmacro17750' => 'vma', 'vmacro22235' => 'vma', 'vmacro23369' => 'vma', 'VMungo0464G0827' => 'vmu', 'VMungo0720G1801' => 'vmu', 'VMungo1383G0379' => 'vmu', 'Zm00001eb076730' => 'zma', 'Zm00001eb113060' => 'zma', 'Zm00001eb170190' => 'zma', 'Zm00001eb427060' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001996', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001996' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '332', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001996' ) ), 'genes' => array( 'A03p06380' => 'bna', 'A06p14000' => 'bna', 'A07p39350' => 'bna', 'A10p24390' => 'bna', 'Aa31LG11G15370' => 'aar', 'Aa31LG4G3660' => 'aar', 'Aa31LG7G2720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2462' => 'aag', 'Actinidia02657' => 'ach', 'Actinidia05868' => 'ach', 'Actinidia34677' => 'ach', 'Ah.11g045350' => 'amhyb', 'AL1G30290' => 'aly', 'AL2G33180' => 'aly', 'AL6G24680' => 'aly', 'Aqoxy3G04327' => 'aox', 'Aqoxy5G03213' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IEW9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.107ZNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B5LVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ZB81I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I8ZWR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8L4QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGG1CT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA1NT7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR4UTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3XDKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDLI1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW78JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1U3RA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9SC1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ7LLZ' => 'arhy', 'AT1G17940' => 'ath', 'AT1G73390' => 'ath', 'AT5G14020' => 'ath', 'ATR0124G046' => 'atr', 'ATR0582G333' => 'atr', 'Atru.chr11.50' => 'acertr', 'Atru.chr11.53' => 'acertr', 'Atru.chr6.2628' => 'acertr', 'Atru.chr9.18' => 'acertr', 'AUR62019723' => 'cqu', 'AUR62035468' => 'cqu', 'AUR62035469' => 'cqu', 'AUR62037850' => 'cqu', 'AUR62041090' => 'cqu', 'BcaB01g05314' => 'bca', 'BcaB03g15056' => 'bca', 'BcaB07g34017' => 'bca', 'BcaB07g34018' => 'bca', 'BcaC03g17499' => 'bca', 'BcaC05g25697' => 'bca', 'BcaC08g46762' => 'bca', 'BolC3t13236H' => 'bol', 'BolC5t30332H' => 'bol', 'BolC6t39796H' => 'bol', 'BolC9t59146H' => 'bol', 'BolC9t59147H' => 'bol', 'BraA03t09967Z' => 'bra', 'BraA06t24538Z' => 'bra', 'BraA07t31484Z' => 'bra', 'BraA10t44505Z' => 'bra', 'C03p07340' => 'bna', 'C05p16320' => 'bna', 'C06p47580' => 'bna', 'C09p63100' => 'bna', 'CAN.G473.81' => 'can', 'CAN.G861.32' => 'can', 'CANSAT80G0367' => 'cansat', 'CARHR018560' => 'chi', 'CARHR066440' => 'chi', 'CARHR066450' => 'chi', 'CARHR199360' => 'chi', 'Carub.0001s1764' => 'cru', 'Carub.0002s2013' => 'cru', 'Carub.0006s1221' => 'cru', 'Ca_08106_v3' => 'car', 'Ca_09929_v3' => 'car', 'Ca_09933_v3' => 'car', 'Ca_25376_v3' => 'car', 'Cc02_g29280' => 'ccan', 'CDE07G1305' => 'cde', 'CDE07G1519' => 'cde', 'Cfa007184' => 'cfa', 'Cfa017804' => 'cfa', 'Ciclev10015370m.g' => 'ccl', 'Ciclev10015430m.g' => 'ccl', 'Ciclev10021034m.g' => 'ccl', 'CiPaw.03G003700' => 'cil', 'CiPaw.15G107400' => 'cil', 'ClCG01G014730' => 'cla', 'ClCG05G013760' => 'cla', 'COL.COLO4_13330' => 'col', 'COL.COLO4_22327' => 'col', 'COL.COLO4_22328' => 'col', 'COL.COLO4_24077' => 'col', 'COL.COLO4_33136' => 'col', 'Cpa.g.sc168.4' => 'cpa', 'Cpa.g.sc168.6' => 'cpa', 'Cpa.g.sc257.5' => 'cpa', 'Cpa.g.sc70.93' => 'cpa', 'CsaV3_1G007600' => 'csa', 'CsaV3_3G026360' => 'csa', 'CSS0010361' => 'camsi', 'CSS0032729' => 'camsi', 'CSS0034595' => 'camsi', 'DCAR_000945' => 'dca', 'DCAR_011407' => 'dca', 'DCAR_014480' => 'dca', 'DCAR_014753' => 'dca', 'Dinv03500' => 'din', 'Dinv03505' => 'din', 'Dinv11734' => 'din', 'Dinv25626' => 'din', 'Duzib084G0350' => 'dzi', 'Duzib132G1176' => 'dzi', 'Duzib147G0925' => 'dzi', 'ECA238G2366' => 'eca', 'ECA246G2407' => 'eca', 'EL10Ac2g03311' => 'bvu', 'EL10Ac6g13376' => 'bvu', 'Eucgr.H00656' => 'egr', 'Eucgr.H03368' => 'egr', 'Eucgr.K02328' => 'egr', 'FAN02G0478' => 'fan', 'FAN02G4394' => 'fan', 'FAN04G1098' => 'fan', 'FAN05G4316' => 'fan', 'FAN08G0392' => 'fan', 'FAN13G1325' => 'fan', 'FAN14G3452' => 'fan', 'FAN18G1139' => 'fan', 'FvH4_5g18540' => 'fve', 'FvH4_6g54080' => 'fve', 'Glyma.09G161900' => 'gma', 'Glyma.10G173800' => 'gma', 'Glyma.16G051000' => 'gma', 'Glyma.16G211100' => 'gma', 'Glyma.19G099600' => 'gma', 'Glyma.20G216500' => 'gma', 'Gohir.A03G090500' => 'ghi', 'Gohir.A03G167700' => 'ghi', 'Gohir.A07G231000' => 'ghi', 'Gohir.A12G272400' => 'ghi', 'Gohir.D02G118500' => 'ghi', 'Gohir.D02G190800' => 'ghi', 'Gohir.D07G238200' => 'ghi', 'Gohir.D12G273100' => 'ghi', 'Gorai.001G274000' => 'gra', 'Gorai.005G135300' => 'gra', 'Gorai.005G213600' => 'gra', 'Gorai.008G293500' => 'gra', 'GSVIVG01024250001' => 'vvi', 'GSVIVG01033018001' => 'vvi', 'GSVIVG01034360001' => 'vvi', 'HanXRQChr03g0093091' => 'han', 'HanXRQChr06g0183511' => 'han', 'HanXRQChr08g0221511' => 'han', 'HanXRQChr13g0397011' => 'han', 'HanXRQChr15g0475801' => 'han', 'HanXRQChr16g0528601' => 'han', 'HanXRQChr17g0551571' => 'han', 'Haze_14925' => 'cav', 'Haze_18409' => 'cav', 'Hma1.2p1_0248F.1_g102040' => 'hma', 'Hma1.2p1_0816F.1_g222960' => 'hma', 'HPP92_014762' => 'vpl', 'HPP92_015005' => 'vpl', 'Hund12857' => 'sun', 'Hund12858' => 'sun', 'Hund13063' => 'sun', 'Hund29415' => 'sun', 'Hund29416' => 'sun', 'Lalb_Chr06g0168661' => 'lal', 'Lalb_Chr14g0363831' => 'lal', 'Lalb_Chr14g0370151' => 'lal', 'Lalb_Chr21g0311681' => 'lal', 'Lj1g0022123' => 'lja', 'Lj2g0017850' => 'lja', 'Lj5A168T93' => 'lonja', 'Lj5g0026773' => 'lja', 'Lj7C614T14' => 'lonja', 'Lj9A411G75' => 'lonja', 'Lsat_1_v5_gn_0_11320' => 'lsa', 'Lsat_1_v5_gn_2_19660' => 'lsa', 'Manes.02G220600' => 'mes', 'Manes.04G090920' => 'mes', 'Manes.04G091001' => 'mes', 'Manes.04G161500' => 'mes', 'Manes.11G079200' => 'mes', 'MBI03_g13445_MAGBIO' => 'mbi', 'MBI06_g12549_MAGBIO' => 'mbi', 'MD06G1240300' => 'mdo', 'MD09G1005600' => 'mdo', 'MD09G1124500' => 'mdo', 'MD10G1018100' => 'mdo', 'MD14G1246500' => 'mdo', 'MD17G1009700' => 'mdo', 'Medtr1g077580' => 'mtr', 'Medtr6g077430' => 'mtr', 'Medtr6g077490' => 'mtr', 'Medtr7g083110' => 'mtr', 'MELO3C002179.2' => 'cme', 'MELO3C014936.2' => 'cme', 'Migut.F00024' => 'egut', 'Migut.O00277' => 'egut', 'MSTRG.11563' => 'ama', 'MSTRG.3053' => 'ama', 'MSTRG.9716' => 'ama', 'Nitab4.5_0000162g0010' => 'nta', 'Nitab4.5_0001495g0060' => 'nta', 'Nitab4.5_0003318g0170' => 'nta', 'Nitab4.5_0007717g0070' => 'nta', 'Nn3g16335' => 'nnu', 'Nn3g18551' => 'nnu', 'Nn4g25177' => 'nnu', 'Oeu020408.1' => 'oeu', 'Oeu057514.3' => 'oeu', 'Oeu062063.1' => 'oeu', 'Os02g0828100' => 'osa', 'Os04g0527400' => 'osa', 'Os11g0514800' => 'osa', 'Peaxi162Scf00171g00132' => 'pax', 'Peaxi162Scf00420g00735' => 'pax', 'Peaxi162Scf01026g00019' => 'pax', 'PGR044G0536' => 'pgr', 'PGR083G0518' => 'pgr', 'PGR083G1912' => 'pgr', 'PGSC0003DMG400015281' => 'stu', 'PGSC0003DMG400018727' => 'stu', 'PGSC0003DMG400020218' => 'stu', 'Phvul.001G087500' => 'pvu', 'Phvul.004G137200' => 'pvu', 'Phvul.L006201' => 'pvu', 'Potri.001G323600' => 'ptr', 'Potri.004G067400' => 'ptr', 'Potri.017G062000' => 'ptr', 'Potri.017G154200' => 'ptr', 'Pp3c10_2740' => 'ppa', 'Pp3c14_9570' => 'ppa', 'Pp3c16_12200' => 'ppa', 'Pp3c2_19570' => 'ppa', 'Pp3c5_5280' => 'ppa', 'Pp3c6_25010' => 'ppa', 'Prupe.3G311400' => 'ppe', 'Prupe.5G244800' => 'ppe', 'Psat3g096040' => 'psa', 'Psat3g187560' => 'psa', 'Psat6g054560' => 'psa', 'PSO017G2277' => 'pso', 'PSO017G2498' => 'pso', 'PSO063G3302' => 'pso', 'PSO170G5286' => 'pso', 'PSO478G0040' => 'pso', 'PSO782G1958' => 'pso', 'QL01p000420' => 'qlo', 'QL01p011503' => 'qlo', 'QL02p070193' => 'qlo', 'QL10p033816' => 'qlo', 'QL10p033825' => 'qlo', 'RcHm_v2.0_Chr2g0176271' => 'rch', 'RcHm_v2.0_Chr7g0176971' => 'rch', 'Rhsim08G0125200' => 'rsi', 'Rhsim10G0002600' => 'rsi', 'Sabra04G0045200' => 'sbr', 'Sabra16G0206300' => 'sbr', 'Sabra17G0056100' => 'sbr', 'Sabra17G0126300' => 'sbr', 'SalBow2G0107' => 'sbo', 'SalBow2G1895' => 'sbo', 'SalBow2G2867' => 'sbo', 'SalBow3G2746' => 'sbo', 'SalBow4G1097' => 'sbo', 'SalBow4G2816' => 'sbo', 'SalBow5G3524' => 'sbo', 'SalBow5G4966' => 'sbo', 'SalBow6G3115' => 'sbo', 'SalBow8G0316' => 'sbo', 'SalBow8G2722' => 'sbo', 'Sc10g0006310' => 'sci', 'Sc10g0006380' => 'sci', 'Sed0006320' => 'sed', 'Sed0011987' => 'sed', 'Sed0016481' => 'sed', 'SEGI_23745' => 'sgi', 'SGA_v2.0_scaffold253G45159' => 'sas', 'SGA_v2.0_scaffold25G10732' => 'sas', 'SHI21153' => 'shi', 'SMO334G0092' => 'smo', 'SMO356G0058' => 'smo', 'Solyc02g093960.3' => 'sly', 'Solyc03g019950.3' => 'sly', 'Sopen02g038610' => 'spe', 'Sopen03g029670' => 'spe', 'Sp1g16010' => 'spa', 'Sp5g28320' => 'spa', 'Sp6g29980' => 'spa', 'TAR371G0948' => 'tar', 'TAR622G0095' => 'tar', 'TAR629G0755' => 'tar', 'TAR629G2546' => 'tar', 'THA.LOC104802368' => 'tha', 'THA.LOC104813932' => 'tha', 'Thecc.02G152700' => 'tca', 'Thecc.03G069500' => 'tca', 'Thecc.04G043700' => 'tca', 'Thhalv10007785m.g' => 'esa', 'Thhalv10013631m.g' => 'esa', 'Thhalv10018609m.g' => 'esa', 'TPR.G18958' => 'tpr', 'TPR.G24687' => 'tpr', 'TPR.G28464' => 'tpr', 'TPR.G484' => 'tpr', 'TPR.G8867' => 'tpr', 'TWI15G0478' => 'twi', 'TWI34G0708' => 'twi', 'TWI60G0804' => 'twi', 'TWI74G1485' => 'twi', 'TWI81G0016' => 'twi', 'unitig_22.g5319' => 'ugi', 'vmacro17749' => 'vma', 'vmacro17750' => 'vma', 'vmacro22235' => 'vma', 'vmacro23369' => 'vma', 'VMungo0464G0827' => 'vmu', 'VMungo0720G1801' => 'vmu', 'VMungo1383G0379' => 'vmu', 'Zm00001eb076730' => 'zma', 'Zm00001eb113060' => 'zma', 'Zm00001eb170190' => 'zma', 'Zm00001eb427060' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001996' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001996' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001996' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001996' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '332', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p06380' => 'bna', 'A06p14000' => 'bna', 'A07p39350' => 'bna', 'A10p24390' => 'bna', 'Aa31LG11G15370' => 'aar', 'Aa31LG4G3660' => 'aar', 'Aa31LG7G2720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2462' => 'aag', 'Actinidia02657' => 'ach', 'Actinidia05868' => 'ach', 'Actinidia34677' => 'ach', 'Ah.11g045350' => 'amhyb', 'AL1G30290' => 'aly', 'AL2G33180' => 'aly', 'AL6G24680' => 'aly', 'Aqoxy3G04327' => 'aox', 'Aqoxy5G03213' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IEW9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.107ZNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B5LVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ZB81I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I8ZWR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8L4QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGG1CT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA1NT7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR4UTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3XDKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDLI1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW78JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1U3RA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9SC1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ7LLZ' => 'arhy', 'AT1G17940' => 'ath', 'AT1G73390' => 'ath', 'AT5G14020' => 'ath', 'ATR0124G046' => 'atr', 'ATR0582G333' => 'atr', 'Atru.chr11.50' => 'acertr', 'Atru.chr11.53' => 'acertr', 'Atru.chr6.2628' => 'acertr', 'Atru.chr9.18' => 'acertr', 'AUR62019723' => 'cqu', 'AUR62035468' => 'cqu', 'AUR62035469' => 'cqu', 'AUR62037850' => 'cqu', 'AUR62041090' => 'cqu', 'BcaB01g05314' => 'bca', 'BcaB03g15056' => 'bca', 'BcaB07g34017' => 'bca', 'BcaB07g34018' => 'bca', 'BcaC03g17499' => 'bca', 'BcaC05g25697' => 'bca', 'BcaC08g46762' => 'bca', 'BolC3t13236H' => 'bol', 'BolC5t30332H' => 'bol', 'BolC6t39796H' => 'bol', 'BolC9t59146H' => 'bol', 'BolC9t59147H' => 'bol', 'BraA03t09967Z' => 'bra', 'BraA06t24538Z' => 'bra', 'BraA07t31484Z' => 'bra', 'BraA10t44505Z' => 'bra', 'C03p07340' => 'bna', 'C05p16320' => 'bna', 'C06p47580' => 'bna', 'C09p63100' => 'bna', 'CAN.G473.81' => 'can', 'CAN.G861.32' => 'can', 'CANSAT80G0367' => 'cansat', 'CARHR018560' => 'chi', 'CARHR066440' => 'chi', 'CARHR066450' => 'chi', 'CARHR199360' => 'chi', 'Carub.0001s1764' => 'cru', 'Carub.0002s2013' => 'cru', 'Carub.0006s1221' => 'cru', 'Ca_08106_v3' => 'car', 'Ca_09929_v3' => 'car', 'Ca_09933_v3' => 'car', 'Ca_25376_v3' => 'car', 'Cc02_g29280' => 'ccan', 'CDE07G1305' => 'cde', 'CDE07G1519' => 'cde', 'Cfa007184' => 'cfa', 'Cfa017804' => 'cfa', 'Ciclev10015370m.g' => 'ccl', 'Ciclev10015430m.g' => 'ccl', 'Ciclev10021034m.g' => 'ccl', 'CiPaw.03G003700' => 'cil', 'CiPaw.15G107400' => 'cil', 'ClCG01G014730' => 'cla', 'ClCG05G013760' => 'cla', 'COL.COLO4_13330' => 'col', 'COL.COLO4_22327' => 'col', 'COL.COLO4_22328' => 'col', 'COL.COLO4_24077' => 'col', 'COL.COLO4_33136' => 'col', 'Cpa.g.sc168.4' => 'cpa', 'Cpa.g.sc168.6' => 'cpa', 'Cpa.g.sc257.5' => 'cpa', 'Cpa.g.sc70.93' => 'cpa', 'CsaV3_1G007600' => 'csa', 'CsaV3_3G026360' => 'csa', 'CSS0010361' => 'camsi', 'CSS0032729' => 'camsi', 'CSS0034595' => 'camsi', 'DCAR_000945' => 'dca', 'DCAR_011407' => 'dca', 'DCAR_014480' => 'dca', 'DCAR_014753' => 'dca', 'Dinv03500' => 'din', 'Dinv03505' => 'din', 'Dinv11734' => 'din', 'Dinv25626' => 'din', 'Duzib084G0350' => 'dzi', 'Duzib132G1176' => 'dzi', 'Duzib147G0925' => 'dzi', 'ECA238G2366' => 'eca', 'ECA246G2407' => 'eca', 'EL10Ac2g03311' => 'bvu', 'EL10Ac6g13376' => 'bvu', 'Eucgr.H00656' => 'egr', 'Eucgr.H03368' => 'egr', 'Eucgr.K02328' => 'egr', 'FAN02G0478' => 'fan', 'FAN02G4394' => 'fan', 'FAN04G1098' => 'fan', 'FAN05G4316' => 'fan', 'FAN08G0392' => 'fan', 'FAN13G1325' => 'fan', 'FAN14G3452' => 'fan', 'FAN18G1139' => 'fan', 'FvH4_5g18540' => 'fve', 'FvH4_6g54080' => 'fve', 'Glyma.09G161900' => 'gma', 'Glyma.10G173800' => 'gma', 'Glyma.16G051000' => 'gma', 'Glyma.16G211100' => 'gma', 'Glyma.19G099600' => 'gma', 'Glyma.20G216500' => 'gma', 'Gohir.A03G090500' => 'ghi', 'Gohir.A03G167700' => 'ghi', 'Gohir.A07G231000' => 'ghi', 'Gohir.A12G272400' => 'ghi', 'Gohir.D02G118500' => 'ghi', 'Gohir.D02G190800' => 'ghi', 'Gohir.D07G238200' => 'ghi', 'Gohir.D12G273100' => 'ghi', 'Gorai.001G274000' => 'gra', 'Gorai.005G135300' => 'gra', 'Gorai.005G213600' => 'gra', 'Gorai.008G293500' => 'gra', 'GSVIVG01024250001' => 'vvi', 'GSVIVG01033018001' => 'vvi', 'GSVIVG01034360001' => 'vvi', 'HanXRQChr03g0093091' => 'han', 'HanXRQChr06g0183511' => 'han', 'HanXRQChr08g0221511' => 'han', 'HanXRQChr13g0397011' => 'han', 'HanXRQChr15g0475801' => 'han', 'HanXRQChr16g0528601' => 'han', 'HanXRQChr17g0551571' => 'han', 'Haze_14925' => 'cav', 'Haze_18409' => 'cav', 'Hma1.2p1_0248F.1_g102040' => 'hma', 'Hma1.2p1_0816F.1_g222960' => 'hma', 'HPP92_014762' => 'vpl', 'HPP92_015005' => 'vpl', 'Hund12857' => 'sun', 'Hund12858' => 'sun', 'Hund13063' => 'sun', 'Hund29415' => 'sun', 'Hund29416' => 'sun', 'Lalb_Chr06g0168661' => 'lal', 'Lalb_Chr14g0363831' => 'lal', 'Lalb_Chr14g0370151' => 'lal', 'Lalb_Chr21g0311681' => 'lal', 'Lj1g0022123' => 'lja', 'Lj2g0017850' => 'lja', 'Lj5A168T93' => 'lonja', 'Lj5g0026773' => 'lja', 'Lj7C614T14' => 'lonja', 'Lj9A411G75' => 'lonja', 'Lsat_1_v5_gn_0_11320' => 'lsa', 'Lsat_1_v5_gn_2_19660' => 'lsa', 'Manes.02G220600' => 'mes', 'Manes.04G090920' => 'mes', 'Manes.04G091001' => 'mes', 'Manes.04G161500' => 'mes', 'Manes.11G079200' => 'mes', 'MBI03_g13445_MAGBIO' => 'mbi', 'MBI06_g12549_MAGBIO' => 'mbi', 'MD06G1240300' => 'mdo', 'MD09G1005600' => 'mdo', 'MD09G1124500' => 'mdo', 'MD10G1018100' => 'mdo', 'MD14G1246500' => 'mdo', 'MD17G1009700' => 'mdo', 'Medtr1g077580' => 'mtr', 'Medtr6g077430' => 'mtr', 'Medtr6g077490' => 'mtr', 'Medtr7g083110' => 'mtr', 'MELO3C002179.2' => 'cme', 'MELO3C014936.2' => 'cme', 'Migut.F00024' => 'egut', 'Migut.O00277' => 'egut', 'MSTRG.11563' => 'ama', 'MSTRG.3053' => 'ama', 'MSTRG.9716' => 'ama', 'Nitab4.5_0000162g0010' => 'nta', 'Nitab4.5_0001495g0060' => 'nta', 'Nitab4.5_0003318g0170' => 'nta', 'Nitab4.5_0007717g0070' => 'nta', 'Nn3g16335' => 'nnu', 'Nn3g18551' => 'nnu', 'Nn4g25177' => 'nnu', 'Oeu020408.1' => 'oeu', 'Oeu057514.3' => 'oeu', 'Oeu062063.1' => 'oeu', 'Os02g0828100' => 'osa', 'Os04g0527400' => 'osa', 'Os11g0514800' => 'osa', 'Peaxi162Scf00171g00132' => 'pax', 'Peaxi162Scf00420g00735' => 'pax', 'Peaxi162Scf01026g00019' => 'pax', 'PGR044G0536' => 'pgr', 'PGR083G0518' => 'pgr', 'PGR083G1912' => 'pgr', 'PGSC0003DMG400015281' => 'stu', 'PGSC0003DMG400018727' => 'stu', 'PGSC0003DMG400020218' => 'stu', 'Phvul.001G087500' => 'pvu', 'Phvul.004G137200' => 'pvu', 'Phvul.L006201' => 'pvu', 'Potri.001G323600' => 'ptr', 'Potri.004G067400' => 'ptr', 'Potri.017G062000' => 'ptr', 'Potri.017G154200' => 'ptr', 'Pp3c10_2740' => 'ppa', 'Pp3c14_9570' => 'ppa', 'Pp3c16_12200' => 'ppa', 'Pp3c2_19570' => 'ppa', 'Pp3c5_5280' => 'ppa', 'Pp3c6_25010' => 'ppa', 'Prupe.3G311400' => 'ppe', 'Prupe.5G244800' => 'ppe', 'Psat3g096040' => 'psa', 'Psat3g187560' => 'psa', 'Psat6g054560' => 'psa', 'PSO017G2277' => 'pso', 'PSO017G2498' => 'pso', 'PSO063G3302' => 'pso', 'PSO170G5286' => 'pso', 'PSO478G0040' => 'pso', 'PSO782G1958' => 'pso', 'QL01p000420' => 'qlo', 'QL01p011503' => 'qlo', 'QL02p070193' => 'qlo', 'QL10p033816' => 'qlo', 'QL10p033825' => 'qlo', 'RcHm_v2.0_Chr2g0176271' => 'rch', 'RcHm_v2.0_Chr7g0176971' => 'rch', 'Rhsim08G0125200' => 'rsi', 'Rhsim10G0002600' => 'rsi', 'Sabra04G0045200' => 'sbr', 'Sabra16G0206300' => 'sbr', 'Sabra17G0056100' => 'sbr', 'Sabra17G0126300' => 'sbr', 'SalBow2G0107' => 'sbo', 'SalBow2G1895' => 'sbo', 'SalBow2G2867' => 'sbo', 'SalBow3G2746' => 'sbo', 'SalBow4G1097' => 'sbo', 'SalBow4G2816' => 'sbo', 'SalBow5G3524' => 'sbo', 'SalBow5G4966' => 'sbo', 'SalBow6G3115' => 'sbo', 'SalBow8G0316' => 'sbo', 'SalBow8G2722' => 'sbo', 'Sc10g0006310' => 'sci', 'Sc10g0006380' => 'sci', 'Sed0006320' => 'sed', 'Sed0011987' => 'sed', 'Sed0016481' => 'sed', 'SEGI_23745' => 'sgi', 'SGA_v2.0_scaffold253G45159' => 'sas', 'SGA_v2.0_scaffold25G10732' => 'sas', 'SHI21153' => 'shi', 'SMO334G0092' => 'smo', 'SMO356G0058' => 'smo', 'Solyc02g093960.3' => 'sly', 'Solyc03g019950.3' => 'sly', 'Sopen02g038610' => 'spe', 'Sopen03g029670' => 'spe', 'Sp1g16010' => 'spa', 'Sp5g28320' => 'spa', 'Sp6g29980' => 'spa', 'TAR371G0948' => 'tar', 'TAR622G0095' => 'tar', 'TAR629G0755' => 'tar', 'TAR629G2546' => 'tar', 'THA.LOC104802368' => 'tha', 'THA.LOC104813932' => 'tha', 'Thecc.02G152700' => 'tca', 'Thecc.03G069500' => 'tca', 'Thecc.04G043700' => 'tca', 'Thhalv10007785m.g' => 'esa', 'Thhalv10013631m.g' => 'esa', 'Thhalv10018609m.g' => 'esa', 'TPR.G18958' => 'tpr', 'TPR.G24687' => 'tpr', 'TPR.G28464' => 'tpr', 'TPR.G484' => 'tpr', 'TPR.G8867' => 'tpr', 'TWI15G0478' => 'twi', 'TWI34G0708' => 'twi', 'TWI60G0804' => 'twi', 'TWI74G1485' => 'twi', 'TWI81G0016' => 'twi', 'unitig_22.g5319' => 'ugi', 'vmacro17749' => 'vma', 'vmacro17750' => 'vma', 'vmacro22235' => 'vma', 'vmacro23369' => 'vma', 'VMungo0464G0827' => 'vmu', 'VMungo0720G1801' => 'vmu', 'VMungo1383G0379' => 'vmu', 'Zm00001eb076730' => 'zma', 'Zm00001eb113060' => 'zma', 'Zm00001eb170190' => 'zma', 'Zm00001eb427060' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001996', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001996' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '332', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001996' ) ), 'genes' => array( 'A03p06380' => 'bna', 'A06p14000' => 'bna', 'A07p39350' => 'bna', 'A10p24390' => 'bna', 'Aa31LG11G15370' => 'aar', 'Aa31LG4G3660' => 'aar', 'Aa31LG7G2720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2462' => 'aag', 'Actinidia02657' => 'ach', 'Actinidia05868' => 'ach', 'Actinidia34677' => 'ach', 'Ah.11g045350' => 'amhyb', 'AL1G30290' => 'aly', 'AL2G33180' => 'aly', 'AL6G24680' => 'aly', 'Aqoxy3G04327' => 'aox', 'Aqoxy5G03213' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IEW9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.107ZNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B5LVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ZB81I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I8ZWR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8L4QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGG1CT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA1NT7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR4UTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3XDKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDLI1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW78JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1U3RA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9SC1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ7LLZ' => 'arhy', 'AT1G17940' => 'ath', 'AT1G73390' => 'ath', 'AT5G14020' => 'ath', 'ATR0124G046' => 'atr', 'ATR0582G333' => 'atr', 'Atru.chr11.50' => 'acertr', 'Atru.chr11.53' => 'acertr', 'Atru.chr6.2628' => 'acertr', 'Atru.chr9.18' => 'acertr', 'AUR62019723' => 'cqu', 'AUR62035468' => 'cqu', 'AUR62035469' => 'cqu', 'AUR62037850' => 'cqu', 'AUR62041090' => 'cqu', 'BcaB01g05314' => 'bca', 'BcaB03g15056' => 'bca', 'BcaB07g34017' => 'bca', 'BcaB07g34018' => 'bca', 'BcaC03g17499' => 'bca', 'BcaC05g25697' => 'bca', 'BcaC08g46762' => 'bca', 'BolC3t13236H' => 'bol', 'BolC5t30332H' => 'bol', 'BolC6t39796H' => 'bol', 'BolC9t59146H' => 'bol', 'BolC9t59147H' => 'bol', 'BraA03t09967Z' => 'bra', 'BraA06t24538Z' => 'bra', 'BraA07t31484Z' => 'bra', 'BraA10t44505Z' => 'bra', 'C03p07340' => 'bna', 'C05p16320' => 'bna', 'C06p47580' => 'bna', 'C09p63100' => 'bna', 'CAN.G473.81' => 'can', 'CAN.G861.32' => 'can', 'CANSAT80G0367' => 'cansat', 'CARHR018560' => 'chi', 'CARHR066440' => 'chi', 'CARHR066450' => 'chi', 'CARHR199360' => 'chi', 'Carub.0001s1764' => 'cru', 'Carub.0002s2013' => 'cru', 'Carub.0006s1221' => 'cru', 'Ca_08106_v3' => 'car', 'Ca_09929_v3' => 'car', 'Ca_09933_v3' => 'car', 'Ca_25376_v3' => 'car', 'Cc02_g29280' => 'ccan', 'CDE07G1305' => 'cde', 'CDE07G1519' => 'cde', 'Cfa007184' => 'cfa', 'Cfa017804' => 'cfa', 'Ciclev10015370m.g' => 'ccl', 'Ciclev10015430m.g' => 'ccl', 'Ciclev10021034m.g' => 'ccl', 'CiPaw.03G003700' => 'cil', 'CiPaw.15G107400' => 'cil', 'ClCG01G014730' => 'cla', 'ClCG05G013760' => 'cla', 'COL.COLO4_13330' => 'col', 'COL.COLO4_22327' => 'col', 'COL.COLO4_22328' => 'col', 'COL.COLO4_24077' => 'col', 'COL.COLO4_33136' => 'col', 'Cpa.g.sc168.4' => 'cpa', 'Cpa.g.sc168.6' => 'cpa', 'Cpa.g.sc257.5' => 'cpa', 'Cpa.g.sc70.93' => 'cpa', 'CsaV3_1G007600' => 'csa', 'CsaV3_3G026360' => 'csa', 'CSS0010361' => 'camsi', 'CSS0032729' => 'camsi', 'CSS0034595' => 'camsi', 'DCAR_000945' => 'dca', 'DCAR_011407' => 'dca', 'DCAR_014480' => 'dca', 'DCAR_014753' => 'dca', 'Dinv03500' => 'din', 'Dinv03505' => 'din', 'Dinv11734' => 'din', 'Dinv25626' => 'din', 'Duzib084G0350' => 'dzi', 'Duzib132G1176' => 'dzi', 'Duzib147G0925' => 'dzi', 'ECA238G2366' => 'eca', 'ECA246G2407' => 'eca', 'EL10Ac2g03311' => 'bvu', 'EL10Ac6g13376' => 'bvu', 'Eucgr.H00656' => 'egr', 'Eucgr.H03368' => 'egr', 'Eucgr.K02328' => 'egr', 'FAN02G0478' => 'fan', 'FAN02G4394' => 'fan', 'FAN04G1098' => 'fan', 'FAN05G4316' => 'fan', 'FAN08G0392' => 'fan', 'FAN13G1325' => 'fan', 'FAN14G3452' => 'fan', 'FAN18G1139' => 'fan', 'FvH4_5g18540' => 'fve', 'FvH4_6g54080' => 'fve', 'Glyma.09G161900' => 'gma', 'Glyma.10G173800' => 'gma', 'Glyma.16G051000' => 'gma', 'Glyma.16G211100' => 'gma', 'Glyma.19G099600' => 'gma', 'Glyma.20G216500' => 'gma', 'Gohir.A03G090500' => 'ghi', 'Gohir.A03G167700' => 'ghi', 'Gohir.A07G231000' => 'ghi', 'Gohir.A12G272400' => 'ghi', 'Gohir.D02G118500' => 'ghi', 'Gohir.D02G190800' => 'ghi', 'Gohir.D07G238200' => 'ghi', 'Gohir.D12G273100' => 'ghi', 'Gorai.001G274000' => 'gra', 'Gorai.005G135300' => 'gra', 'Gorai.005G213600' => 'gra', 'Gorai.008G293500' => 'gra', 'GSVIVG01024250001' => 'vvi', 'GSVIVG01033018001' => 'vvi', 'GSVIVG01034360001' => 'vvi', 'HanXRQChr03g0093091' => 'han', 'HanXRQChr06g0183511' => 'han', 'HanXRQChr08g0221511' => 'han', 'HanXRQChr13g0397011' => 'han', 'HanXRQChr15g0475801' => 'han', 'HanXRQChr16g0528601' => 'han', 'HanXRQChr17g0551571' => 'han', 'Haze_14925' => 'cav', 'Haze_18409' => 'cav', 'Hma1.2p1_0248F.1_g102040' => 'hma', 'Hma1.2p1_0816F.1_g222960' => 'hma', 'HPP92_014762' => 'vpl', 'HPP92_015005' => 'vpl', 'Hund12857' => 'sun', 'Hund12858' => 'sun', 'Hund13063' => 'sun', 'Hund29415' => 'sun', 'Hund29416' => 'sun', 'Lalb_Chr06g0168661' => 'lal', 'Lalb_Chr14g0363831' => 'lal', 'Lalb_Chr14g0370151' => 'lal', 'Lalb_Chr21g0311681' => 'lal', 'Lj1g0022123' => 'lja', 'Lj2g0017850' => 'lja', 'Lj5A168T93' => 'lonja', 'Lj5g0026773' => 'lja', 'Lj7C614T14' => 'lonja', 'Lj9A411G75' => 'lonja', 'Lsat_1_v5_gn_0_11320' => 'lsa', 'Lsat_1_v5_gn_2_19660' => 'lsa', 'Manes.02G220600' => 'mes', 'Manes.04G090920' => 'mes', 'Manes.04G091001' => 'mes', 'Manes.04G161500' => 'mes', 'Manes.11G079200' => 'mes', 'MBI03_g13445_MAGBIO' => 'mbi', 'MBI06_g12549_MAGBIO' => 'mbi', 'MD06G1240300' => 'mdo', 'MD09G1005600' => 'mdo', 'MD09G1124500' => 'mdo', 'MD10G1018100' => 'mdo', 'MD14G1246500' => 'mdo', 'MD17G1009700' => 'mdo', 'Medtr1g077580' => 'mtr', 'Medtr6g077430' => 'mtr', 'Medtr6g077490' => 'mtr', 'Medtr7g083110' => 'mtr', 'MELO3C002179.2' => 'cme', 'MELO3C014936.2' => 'cme', 'Migut.F00024' => 'egut', 'Migut.O00277' => 'egut', 'MSTRG.11563' => 'ama', 'MSTRG.3053' => 'ama', 'MSTRG.9716' => 'ama', 'Nitab4.5_0000162g0010' => 'nta', 'Nitab4.5_0001495g0060' => 'nta', 'Nitab4.5_0003318g0170' => 'nta', 'Nitab4.5_0007717g0070' => 'nta', 'Nn3g16335' => 'nnu', 'Nn3g18551' => 'nnu', 'Nn4g25177' => 'nnu', 'Oeu020408.1' => 'oeu', 'Oeu057514.3' => 'oeu', 'Oeu062063.1' => 'oeu', 'Os02g0828100' => 'osa', 'Os04g0527400' => 'osa', 'Os11g0514800' => 'osa', 'Peaxi162Scf00171g00132' => 'pax', 'Peaxi162Scf00420g00735' => 'pax', 'Peaxi162Scf01026g00019' => 'pax', 'PGR044G0536' => 'pgr', 'PGR083G0518' => 'pgr', 'PGR083G1912' => 'pgr', 'PGSC0003DMG400015281' => 'stu', 'PGSC0003DMG400018727' => 'stu', 'PGSC0003DMG400020218' => 'stu', 'Phvul.001G087500' => 'pvu', 'Phvul.004G137200' => 'pvu', 'Phvul.L006201' => 'pvu', 'Potri.001G323600' => 'ptr', 'Potri.004G067400' => 'ptr', 'Potri.017G062000' => 'ptr', 'Potri.017G154200' => 'ptr', 'Pp3c10_2740' => 'ppa', 'Pp3c14_9570' => 'ppa', 'Pp3c16_12200' => 'ppa', 'Pp3c2_19570' => 'ppa', 'Pp3c5_5280' => 'ppa', 'Pp3c6_25010' => 'ppa', 'Prupe.3G311400' => 'ppe', 'Prupe.5G244800' => 'ppe', 'Psat3g096040' => 'psa', 'Psat3g187560' => 'psa', 'Psat6g054560' => 'psa', 'PSO017G2277' => 'pso', 'PSO017G2498' => 'pso', 'PSO063G3302' => 'pso', 'PSO170G5286' => 'pso', 'PSO478G0040' => 'pso', 'PSO782G1958' => 'pso', 'QL01p000420' => 'qlo', 'QL01p011503' => 'qlo', 'QL02p070193' => 'qlo', 'QL10p033816' => 'qlo', 'QL10p033825' => 'qlo', 'RcHm_v2.0_Chr2g0176271' => 'rch', 'RcHm_v2.0_Chr7g0176971' => 'rch', 'Rhsim08G0125200' => 'rsi', 'Rhsim10G0002600' => 'rsi', 'Sabra04G0045200' => 'sbr', 'Sabra16G0206300' => 'sbr', 'Sabra17G0056100' => 'sbr', 'Sabra17G0126300' => 'sbr', 'SalBow2G0107' => 'sbo', 'SalBow2G1895' => 'sbo', 'SalBow2G2867' => 'sbo', 'SalBow3G2746' => 'sbo', 'SalBow4G1097' => 'sbo', 'SalBow4G2816' => 'sbo', 'SalBow5G3524' => 'sbo', 'SalBow5G4966' => 'sbo', 'SalBow6G3115' => 'sbo', 'SalBow8G0316' => 'sbo', 'SalBow8G2722' => 'sbo', 'Sc10g0006310' => 'sci', 'Sc10g0006380' => 'sci', 'Sed0006320' => 'sed', 'Sed0011987' => 'sed', 'Sed0016481' => 'sed', 'SEGI_23745' => 'sgi', 'SGA_v2.0_scaffold253G45159' => 'sas', 'SGA_v2.0_scaffold25G10732' => 'sas', 'SHI21153' => 'shi', 'SMO334G0092' => 'smo', 'SMO356G0058' => 'smo', 'Solyc02g093960.3' => 'sly', 'Solyc03g019950.3' => 'sly', 'Sopen02g038610' => 'spe', 'Sopen03g029670' => 'spe', 'Sp1g16010' => 'spa', 'Sp5g28320' => 'spa', 'Sp6g29980' => 'spa', 'TAR371G0948' => 'tar', 'TAR622G0095' => 'tar', 'TAR629G0755' => 'tar', 'TAR629G2546' => 'tar', 'THA.LOC104802368' => 'tha', 'THA.LOC104813932' => 'tha', 'Thecc.02G152700' => 'tca', 'Thecc.03G069500' => 'tca', 'Thecc.04G043700' => 'tca', 'Thhalv10007785m.g' => 'esa', 'Thhalv10013631m.g' => 'esa', 'Thhalv10018609m.g' => 'esa', 'TPR.G18958' => 'tpr', 'TPR.G24687' => 'tpr', 'TPR.G28464' => 'tpr', 'TPR.G484' => 'tpr', 'TPR.G8867' => 'tpr', 'TWI15G0478' => 'twi', 'TWI34G0708' => 'twi', 'TWI60G0804' => 'twi', 'TWI74G1485' => 'twi', 'TWI81G0016' => 'twi', 'unitig_22.g5319' => 'ugi', 'vmacro17749' => 'vma', 'vmacro17750' => 'vma', 'vmacro22235' => 'vma', 'vmacro23369' => 'vma', 'VMungo0464G0827' => 'vmu', 'VMungo0720G1801' => 'vmu', 'VMungo1383G0379' => 'vmu', 'Zm00001eb076730' => 'zma', 'Zm00001eb113060' => 'zma', 'Zm00001eb170190' => 'zma', 'Zm00001eb427060' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001996' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001996' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001996' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001996' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '332', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p06380' => 'bna', 'A06p14000' => 'bna', 'A07p39350' => 'bna', 'A10p24390' => 'bna', 'Aa31LG11G15370' => 'aar', 'Aa31LG4G3660' => 'aar', 'Aa31LG7G2720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2462' => 'aag', 'Actinidia02657' => 'ach', 'Actinidia05868' => 'ach', 'Actinidia34677' => 'ach', 'Ah.11g045350' => 'amhyb', 'AL1G30290' => 'aly', 'AL2G33180' => 'aly', 'AL6G24680' => 'aly', 'Aqoxy3G04327' => 'aox', 'Aqoxy5G03213' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IEW9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.107ZNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B5LVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ZB81I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I8ZWR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8L4QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGG1CT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA1NT7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR4UTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3XDKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDLI1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW78JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1U3RA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9SC1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ7LLZ' => 'arhy', 'AT1G17940' => 'ath', 'AT1G73390' => 'ath', 'AT5G14020' => 'ath', 'ATR0124G046' => 'atr', 'ATR0582G333' => 'atr', 'Atru.chr11.50' => 'acertr', 'Atru.chr11.53' => 'acertr', 'Atru.chr6.2628' => 'acertr', 'Atru.chr9.18' => 'acertr', 'AUR62019723' => 'cqu', 'AUR62035468' => 'cqu', 'AUR62035469' => 'cqu', 'AUR62037850' => 'cqu', 'AUR62041090' => 'cqu', 'BcaB01g05314' => 'bca', 'BcaB03g15056' => 'bca', 'BcaB07g34017' => 'bca', 'BcaB07g34018' => 'bca', 'BcaC03g17499' => 'bca', 'BcaC05g25697' => 'bca', 'BcaC08g46762' => 'bca', 'BolC3t13236H' => 'bol', 'BolC5t30332H' => 'bol', 'BolC6t39796H' => 'bol', 'BolC9t59146H' => 'bol', 'BolC9t59147H' => 'bol', 'BraA03t09967Z' => 'bra', 'BraA06t24538Z' => 'bra', 'BraA07t31484Z' => 'bra', 'BraA10t44505Z' => 'bra', 'C03p07340' => 'bna', 'C05p16320' => 'bna', 'C06p47580' => 'bna', 'C09p63100' => 'bna', 'CAN.G473.81' => 'can', 'CAN.G861.32' => 'can', 'CANSAT80G0367' => 'cansat', 'CARHR018560' => 'chi', 'CARHR066440' => 'chi', 'CARHR066450' => 'chi', 'CARHR199360' => 'chi', 'Carub.0001s1764' => 'cru', 'Carub.0002s2013' => 'cru', 'Carub.0006s1221' => 'cru', 'Ca_08106_v3' => 'car', 'Ca_09929_v3' => 'car', 'Ca_09933_v3' => 'car', 'Ca_25376_v3' => 'car', 'Cc02_g29280' => 'ccan', 'CDE07G1305' => 'cde', 'CDE07G1519' => 'cde', 'Cfa007184' => 'cfa', 'Cfa017804' => 'cfa', 'Ciclev10015370m.g' => 'ccl', 'Ciclev10015430m.g' => 'ccl', 'Ciclev10021034m.g' => 'ccl', 'CiPaw.03G003700' => 'cil', 'CiPaw.15G107400' => 'cil', 'ClCG01G014730' => 'cla', 'ClCG05G013760' => 'cla', 'COL.COLO4_13330' => 'col', 'COL.COLO4_22327' => 'col', 'COL.COLO4_22328' => 'col', 'COL.COLO4_24077' => 'col', 'COL.COLO4_33136' => 'col', 'Cpa.g.sc168.4' => 'cpa', 'Cpa.g.sc168.6' => 'cpa', 'Cpa.g.sc257.5' => 'cpa', 'Cpa.g.sc70.93' => 'cpa', 'CsaV3_1G007600' => 'csa', 'CsaV3_3G026360' => 'csa', 'CSS0010361' => 'camsi', 'CSS0032729' => 'camsi', 'CSS0034595' => 'camsi', 'DCAR_000945' => 'dca', 'DCAR_011407' => 'dca', 'DCAR_014480' => 'dca', 'DCAR_014753' => 'dca', 'Dinv03500' => 'din', 'Dinv03505' => 'din', 'Dinv11734' => 'din', 'Dinv25626' => 'din', 'Duzib084G0350' => 'dzi', 'Duzib132G1176' => 'dzi', 'Duzib147G0925' => 'dzi', 'ECA238G2366' => 'eca', 'ECA246G2407' => 'eca', 'EL10Ac2g03311' => 'bvu', 'EL10Ac6g13376' => 'bvu', 'Eucgr.H00656' => 'egr', 'Eucgr.H03368' => 'egr', 'Eucgr.K02328' => 'egr', 'FAN02G0478' => 'fan', 'FAN02G4394' => 'fan', 'FAN04G1098' => 'fan', 'FAN05G4316' => 'fan', 'FAN08G0392' => 'fan', 'FAN13G1325' => 'fan', 'FAN14G3452' => 'fan', 'FAN18G1139' => 'fan', 'FvH4_5g18540' => 'fve', 'FvH4_6g54080' => 'fve', 'Glyma.09G161900' => 'gma', 'Glyma.10G173800' => 'gma', 'Glyma.16G051000' => 'gma', 'Glyma.16G211100' => 'gma', 'Glyma.19G099600' => 'gma', 'Glyma.20G216500' => 'gma', 'Gohir.A03G090500' => 'ghi', 'Gohir.A03G167700' => 'ghi', 'Gohir.A07G231000' => 'ghi', 'Gohir.A12G272400' => 'ghi', 'Gohir.D02G118500' => 'ghi', 'Gohir.D02G190800' => 'ghi', 'Gohir.D07G238200' => 'ghi', 'Gohir.D12G273100' => 'ghi', 'Gorai.001G274000' => 'gra', 'Gorai.005G135300' => 'gra', 'Gorai.005G213600' => 'gra', 'Gorai.008G293500' => 'gra', 'GSVIVG01024250001' => 'vvi', 'GSVIVG01033018001' => 'vvi', 'GSVIVG01034360001' => 'vvi', 'HanXRQChr03g0093091' => 'han', 'HanXRQChr06g0183511' => 'han', 'HanXRQChr08g0221511' => 'han', 'HanXRQChr13g0397011' => 'han', 'HanXRQChr15g0475801' => 'han', 'HanXRQChr16g0528601' => 'han', 'HanXRQChr17g0551571' => 'han', 'Haze_14925' => 'cav', 'Haze_18409' => 'cav', 'Hma1.2p1_0248F.1_g102040' => 'hma', 'Hma1.2p1_0816F.1_g222960' => 'hma', 'HPP92_014762' => 'vpl', 'HPP92_015005' => 'vpl', 'Hund12857' => 'sun', 'Hund12858' => 'sun', 'Hund13063' => 'sun', 'Hund29415' => 'sun', 'Hund29416' => 'sun', 'Lalb_Chr06g0168661' => 'lal', 'Lalb_Chr14g0363831' => 'lal', 'Lalb_Chr14g0370151' => 'lal', 'Lalb_Chr21g0311681' => 'lal', 'Lj1g0022123' => 'lja', 'Lj2g0017850' => 'lja', 'Lj5A168T93' => 'lonja', 'Lj5g0026773' => 'lja', 'Lj7C614T14' => 'lonja', 'Lj9A411G75' => 'lonja', 'Lsat_1_v5_gn_0_11320' => 'lsa', 'Lsat_1_v5_gn_2_19660' => 'lsa', 'Manes.02G220600' => 'mes', 'Manes.04G090920' => 'mes', 'Manes.04G091001' => 'mes', 'Manes.04G161500' => 'mes', 'Manes.11G079200' => 'mes', 'MBI03_g13445_MAGBIO' => 'mbi', 'MBI06_g12549_MAGBIO' => 'mbi', 'MD06G1240300' => 'mdo', 'MD09G1005600' => 'mdo', 'MD09G1124500' => 'mdo', 'MD10G1018100' => 'mdo', 'MD14G1246500' => 'mdo', 'MD17G1009700' => 'mdo', 'Medtr1g077580' => 'mtr', 'Medtr6g077430' => 'mtr', 'Medtr6g077490' => 'mtr', 'Medtr7g083110' => 'mtr', 'MELO3C002179.2' => 'cme', 'MELO3C014936.2' => 'cme', 'Migut.F00024' => 'egut', 'Migut.O00277' => 'egut', 'MSTRG.11563' => 'ama', 'MSTRG.3053' => 'ama', 'MSTRG.9716' => 'ama', 'Nitab4.5_0000162g0010' => 'nta', 'Nitab4.5_0001495g0060' => 'nta', 'Nitab4.5_0003318g0170' => 'nta', 'Nitab4.5_0007717g0070' => 'nta', 'Nn3g16335' => 'nnu', 'Nn3g18551' => 'nnu', 'Nn4g25177' => 'nnu', 'Oeu020408.1' => 'oeu', 'Oeu057514.3' => 'oeu', 'Oeu062063.1' => 'oeu', 'Os02g0828100' => 'osa', 'Os04g0527400' => 'osa', 'Os11g0514800' => 'osa', 'Peaxi162Scf00171g00132' => 'pax', 'Peaxi162Scf00420g00735' => 'pax', 'Peaxi162Scf01026g00019' => 'pax', 'PGR044G0536' => 'pgr', 'PGR083G0518' => 'pgr', 'PGR083G1912' => 'pgr', 'PGSC0003DMG400015281' => 'stu', 'PGSC0003DMG400018727' => 'stu', 'PGSC0003DMG400020218' => 'stu', 'Phvul.001G087500' => 'pvu', 'Phvul.004G137200' => 'pvu', 'Phvul.L006201' => 'pvu', 'Potri.001G323600' => 'ptr', 'Potri.004G067400' => 'ptr', 'Potri.017G062000' => 'ptr', 'Potri.017G154200' => 'ptr', 'Pp3c10_2740' => 'ppa', 'Pp3c14_9570' => 'ppa', 'Pp3c16_12200' => 'ppa', 'Pp3c2_19570' => 'ppa', 'Pp3c5_5280' => 'ppa', 'Pp3c6_25010' => 'ppa', 'Prupe.3G311400' => 'ppe', 'Prupe.5G244800' => 'ppe', 'Psat3g096040' => 'psa', 'Psat3g187560' => 'psa', 'Psat6g054560' => 'psa', 'PSO017G2277' => 'pso', 'PSO017G2498' => 'pso', 'PSO063G3302' => 'pso', 'PSO170G5286' => 'pso', 'PSO478G0040' => 'pso', 'PSO782G1958' => 'pso', 'QL01p000420' => 'qlo', 'QL01p011503' => 'qlo', 'QL02p070193' => 'qlo', 'QL10p033816' => 'qlo', 'QL10p033825' => 'qlo', 'RcHm_v2.0_Chr2g0176271' => 'rch', 'RcHm_v2.0_Chr7g0176971' => 'rch', 'Rhsim08G0125200' => 'rsi', 'Rhsim10G0002600' => 'rsi', 'Sabra04G0045200' => 'sbr', 'Sabra16G0206300' => 'sbr', 'Sabra17G0056100' => 'sbr', 'Sabra17G0126300' => 'sbr', 'SalBow2G0107' => 'sbo', 'SalBow2G1895' => 'sbo', 'SalBow2G2867' => 'sbo', 'SalBow3G2746' => 'sbo', 'SalBow4G1097' => 'sbo', 'SalBow4G2816' => 'sbo', 'SalBow5G3524' => 'sbo', 'SalBow5G4966' => 'sbo', 'SalBow6G3115' => 'sbo', 'SalBow8G0316' => 'sbo', 'SalBow8G2722' => 'sbo', 'Sc10g0006310' => 'sci', 'Sc10g0006380' => 'sci', 'Sed0006320' => 'sed', 'Sed0011987' => 'sed', 'Sed0016481' => 'sed', 'SEGI_23745' => 'sgi', 'SGA_v2.0_scaffold253G45159' => 'sas', 'SGA_v2.0_scaffold25G10732' => 'sas', 'SHI21153' => 'shi', 'SMO334G0092' => 'smo', 'SMO356G0058' => 'smo', 'Solyc02g093960.3' => 'sly', 'Solyc03g019950.3' => 'sly', 'Sopen02g038610' => 'spe', 'Sopen03g029670' => 'spe', 'Sp1g16010' => 'spa', 'Sp5g28320' => 'spa', 'Sp6g29980' => 'spa', 'TAR371G0948' => 'tar', 'TAR622G0095' => 'tar', 'TAR629G0755' => 'tar', 'TAR629G2546' => 'tar', 'THA.LOC104802368' => 'tha', 'THA.LOC104813932' => 'tha', 'Thecc.02G152700' => 'tca', 'Thecc.03G069500' => 'tca', 'Thecc.04G043700' => 'tca', 'Thhalv10007785m.g' => 'esa', 'Thhalv10013631m.g' => 'esa', 'Thhalv10018609m.g' => 'esa', 'TPR.G18958' => 'tpr', 'TPR.G24687' => 'tpr', 'TPR.G28464' => 'tpr', 'TPR.G484' => 'tpr', 'TPR.G8867' => 'tpr', 'TWI15G0478' => 'twi', 'TWI34G0708' => 'twi', 'TWI60G0804' => 'twi', 'TWI74G1485' => 'twi', 'TWI81G0016' => 'twi', 'unitig_22.g5319' => 'ugi', 'vmacro17749' => 'vma', 'vmacro17750' => 'vma', 'vmacro22235' => 'vma', 'vmacro23369' => 'vma', 'VMungo0464G0827' => 'vmu', 'VMungo0720G1801' => 'vmu', 'VMungo1383G0379' => 'vmu', 'Zm00001eb076730' => 'zma', 'Zm00001eb113060' => 'zma', 'Zm00001eb170190' => 'zma', 'Zm00001eb427060' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001996', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001996' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '332', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001996' ) ), 'genes' => array( 'A03p06380' => 'bna', 'A06p14000' => 'bna', 'A07p39350' => 'bna', 'A10p24390' => 'bna', 'Aa31LG11G15370' => 'aar', 'Aa31LG4G3660' => 'aar', 'Aa31LG7G2720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2462' => 'aag', 'Actinidia02657' => 'ach', 'Actinidia05868' => 'ach', 'Actinidia34677' => 'ach', 'Ah.11g045350' => 'amhyb', 'AL1G30290' => 'aly', 'AL2G33180' => 'aly', 'AL6G24680' => 'aly', 'Aqoxy3G04327' => 'aox', 'Aqoxy5G03213' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IEW9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.107ZNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B5LVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ZB81I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I8ZWR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8L4QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGG1CT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA1NT7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR4UTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3XDKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDLI1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW78JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1U3RA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9SC1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ7LLZ' => 'arhy', 'AT1G17940' => 'ath', 'AT1G73390' => 'ath', 'AT5G14020' => 'ath', 'ATR0124G046' => 'atr', 'ATR0582G333' => 'atr', 'Atru.chr11.50' => 'acertr', 'Atru.chr11.53' => 'acertr', 'Atru.chr6.2628' => 'acertr', 'Atru.chr9.18' => 'acertr', 'AUR62019723' => 'cqu', 'AUR62035468' => 'cqu', 'AUR62035469' => 'cqu', 'AUR62037850' => 'cqu', 'AUR62041090' => 'cqu', 'BcaB01g05314' => 'bca', 'BcaB03g15056' => 'bca', 'BcaB07g34017' => 'bca', 'BcaB07g34018' => 'bca', 'BcaC03g17499' => 'bca', 'BcaC05g25697' => 'bca', 'BcaC08g46762' => 'bca', 'BolC3t13236H' => 'bol', 'BolC5t30332H' => 'bol', 'BolC6t39796H' => 'bol', 'BolC9t59146H' => 'bol', 'BolC9t59147H' => 'bol', 'BraA03t09967Z' => 'bra', 'BraA06t24538Z' => 'bra', 'BraA07t31484Z' => 'bra', 'BraA10t44505Z' => 'bra', 'C03p07340' => 'bna', 'C05p16320' => 'bna', 'C06p47580' => 'bna', 'C09p63100' => 'bna', 'CAN.G473.81' => 'can', 'CAN.G861.32' => 'can', 'CANSAT80G0367' => 'cansat', 'CARHR018560' => 'chi', 'CARHR066440' => 'chi', 'CARHR066450' => 'chi', 'CARHR199360' => 'chi', 'Carub.0001s1764' => 'cru', 'Carub.0002s2013' => 'cru', 'Carub.0006s1221' => 'cru', 'Ca_08106_v3' => 'car', 'Ca_09929_v3' => 'car', 'Ca_09933_v3' => 'car', 'Ca_25376_v3' => 'car', 'Cc02_g29280' => 'ccan', 'CDE07G1305' => 'cde', 'CDE07G1519' => 'cde', 'Cfa007184' => 'cfa', 'Cfa017804' => 'cfa', 'Ciclev10015370m.g' => 'ccl', 'Ciclev10015430m.g' => 'ccl', 'Ciclev10021034m.g' => 'ccl', 'CiPaw.03G003700' => 'cil', 'CiPaw.15G107400' => 'cil', 'ClCG01G014730' => 'cla', 'ClCG05G013760' => 'cla', 'COL.COLO4_13330' => 'col', 'COL.COLO4_22327' => 'col', 'COL.COLO4_22328' => 'col', 'COL.COLO4_24077' => 'col', 'COL.COLO4_33136' => 'col', 'Cpa.g.sc168.4' => 'cpa', 'Cpa.g.sc168.6' => 'cpa', 'Cpa.g.sc257.5' => 'cpa', 'Cpa.g.sc70.93' => 'cpa', 'CsaV3_1G007600' => 'csa', 'CsaV3_3G026360' => 'csa', 'CSS0010361' => 'camsi', 'CSS0032729' => 'camsi', 'CSS0034595' => 'camsi', 'DCAR_000945' => 'dca', 'DCAR_011407' => 'dca', 'DCAR_014480' => 'dca', 'DCAR_014753' => 'dca', 'Dinv03500' => 'din', 'Dinv03505' => 'din', 'Dinv11734' => 'din', 'Dinv25626' => 'din', 'Duzib084G0350' => 'dzi', 'Duzib132G1176' => 'dzi', 'Duzib147G0925' => 'dzi', 'ECA238G2366' => 'eca', 'ECA246G2407' => 'eca', 'EL10Ac2g03311' => 'bvu', 'EL10Ac6g13376' => 'bvu', 'Eucgr.H00656' => 'egr', 'Eucgr.H03368' => 'egr', 'Eucgr.K02328' => 'egr', 'FAN02G0478' => 'fan', 'FAN02G4394' => 'fan', 'FAN04G1098' => 'fan', 'FAN05G4316' => 'fan', 'FAN08G0392' => 'fan', 'FAN13G1325' => 'fan', 'FAN14G3452' => 'fan', 'FAN18G1139' => 'fan', 'FvH4_5g18540' => 'fve', 'FvH4_6g54080' => 'fve', 'Glyma.09G161900' => 'gma', 'Glyma.10G173800' => 'gma', 'Glyma.16G051000' => 'gma', 'Glyma.16G211100' => 'gma', 'Glyma.19G099600' => 'gma', 'Glyma.20G216500' => 'gma', 'Gohir.A03G090500' => 'ghi', 'Gohir.A03G167700' => 'ghi', 'Gohir.A07G231000' => 'ghi', 'Gohir.A12G272400' => 'ghi', 'Gohir.D02G118500' => 'ghi', 'Gohir.D02G190800' => 'ghi', 'Gohir.D07G238200' => 'ghi', 'Gohir.D12G273100' => 'ghi', 'Gorai.001G274000' => 'gra', 'Gorai.005G135300' => 'gra', 'Gorai.005G213600' => 'gra', 'Gorai.008G293500' => 'gra', 'GSVIVG01024250001' => 'vvi', 'GSVIVG01033018001' => 'vvi', 'GSVIVG01034360001' => 'vvi', 'HanXRQChr03g0093091' => 'han', 'HanXRQChr06g0183511' => 'han', 'HanXRQChr08g0221511' => 'han', 'HanXRQChr13g0397011' => 'han', 'HanXRQChr15g0475801' => 'han', 'HanXRQChr16g0528601' => 'han', 'HanXRQChr17g0551571' => 'han', 'Haze_14925' => 'cav', 'Haze_18409' => 'cav', 'Hma1.2p1_0248F.1_g102040' => 'hma', 'Hma1.2p1_0816F.1_g222960' => 'hma', 'HPP92_014762' => 'vpl', 'HPP92_015005' => 'vpl', 'Hund12857' => 'sun', 'Hund12858' => 'sun', 'Hund13063' => 'sun', 'Hund29415' => 'sun', 'Hund29416' => 'sun', 'Lalb_Chr06g0168661' => 'lal', 'Lalb_Chr14g0363831' => 'lal', 'Lalb_Chr14g0370151' => 'lal', 'Lalb_Chr21g0311681' => 'lal', 'Lj1g0022123' => 'lja', 'Lj2g0017850' => 'lja', 'Lj5A168T93' => 'lonja', 'Lj5g0026773' => 'lja', 'Lj7C614T14' => 'lonja', 'Lj9A411G75' => 'lonja', 'Lsat_1_v5_gn_0_11320' => 'lsa', 'Lsat_1_v5_gn_2_19660' => 'lsa', 'Manes.02G220600' => 'mes', 'Manes.04G090920' => 'mes', 'Manes.04G091001' => 'mes', 'Manes.04G161500' => 'mes', 'Manes.11G079200' => 'mes', 'MBI03_g13445_MAGBIO' => 'mbi', 'MBI06_g12549_MAGBIO' => 'mbi', 'MD06G1240300' => 'mdo', 'MD09G1005600' => 'mdo', 'MD09G1124500' => 'mdo', 'MD10G1018100' => 'mdo', 'MD14G1246500' => 'mdo', 'MD17G1009700' => 'mdo', 'Medtr1g077580' => 'mtr', 'Medtr6g077430' => 'mtr', 'Medtr6g077490' => 'mtr', 'Medtr7g083110' => 'mtr', 'MELO3C002179.2' => 'cme', 'MELO3C014936.2' => 'cme', 'Migut.F00024' => 'egut', 'Migut.O00277' => 'egut', 'MSTRG.11563' => 'ama', 'MSTRG.3053' => 'ama', 'MSTRG.9716' => 'ama', 'Nitab4.5_0000162g0010' => 'nta', 'Nitab4.5_0001495g0060' => 'nta', 'Nitab4.5_0003318g0170' => 'nta', 'Nitab4.5_0007717g0070' => 'nta', 'Nn3g16335' => 'nnu', 'Nn3g18551' => 'nnu', 'Nn4g25177' => 'nnu', 'Oeu020408.1' => 'oeu', 'Oeu057514.3' => 'oeu', 'Oeu062063.1' => 'oeu', 'Os02g0828100' => 'osa', 'Os04g0527400' => 'osa', 'Os11g0514800' => 'osa', 'Peaxi162Scf00171g00132' => 'pax', 'Peaxi162Scf00420g00735' => 'pax', 'Peaxi162Scf01026g00019' => 'pax', 'PGR044G0536' => 'pgr', 'PGR083G0518' => 'pgr', 'PGR083G1912' => 'pgr', 'PGSC0003DMG400015281' => 'stu', 'PGSC0003DMG400018727' => 'stu', 'PGSC0003DMG400020218' => 'stu', 'Phvul.001G087500' => 'pvu', 'Phvul.004G137200' => 'pvu', 'Phvul.L006201' => 'pvu', 'Potri.001G323600' => 'ptr', 'Potri.004G067400' => 'ptr', 'Potri.017G062000' => 'ptr', 'Potri.017G154200' => 'ptr', 'Pp3c10_2740' => 'ppa', 'Pp3c14_9570' => 'ppa', 'Pp3c16_12200' => 'ppa', 'Pp3c2_19570' => 'ppa', 'Pp3c5_5280' => 'ppa', 'Pp3c6_25010' => 'ppa', 'Prupe.3G311400' => 'ppe', 'Prupe.5G244800' => 'ppe', 'Psat3g096040' => 'psa', 'Psat3g187560' => 'psa', 'Psat6g054560' => 'psa', 'PSO017G2277' => 'pso', 'PSO017G2498' => 'pso', 'PSO063G3302' => 'pso', 'PSO170G5286' => 'pso', 'PSO478G0040' => 'pso', 'PSO782G1958' => 'pso', 'QL01p000420' => 'qlo', 'QL01p011503' => 'qlo', 'QL02p070193' => 'qlo', 'QL10p033816' => 'qlo', 'QL10p033825' => 'qlo', 'RcHm_v2.0_Chr2g0176271' => 'rch', 'RcHm_v2.0_Chr7g0176971' => 'rch', 'Rhsim08G0125200' => 'rsi', 'Rhsim10G0002600' => 'rsi', 'Sabra04G0045200' => 'sbr', 'Sabra16G0206300' => 'sbr', 'Sabra17G0056100' => 'sbr', 'Sabra17G0126300' => 'sbr', 'SalBow2G0107' => 'sbo', 'SalBow2G1895' => 'sbo', 'SalBow2G2867' => 'sbo', 'SalBow3G2746' => 'sbo', 'SalBow4G1097' => 'sbo', 'SalBow4G2816' => 'sbo', 'SalBow5G3524' => 'sbo', 'SalBow5G4966' => 'sbo', 'SalBow6G3115' => 'sbo', 'SalBow8G0316' => 'sbo', 'SalBow8G2722' => 'sbo', 'Sc10g0006310' => 'sci', 'Sc10g0006380' => 'sci', 'Sed0006320' => 'sed', 'Sed0011987' => 'sed', 'Sed0016481' => 'sed', 'SEGI_23745' => 'sgi', 'SGA_v2.0_scaffold253G45159' => 'sas', 'SGA_v2.0_scaffold25G10732' => 'sas', 'SHI21153' => 'shi', 'SMO334G0092' => 'smo', 'SMO356G0058' => 'smo', 'Solyc02g093960.3' => 'sly', 'Solyc03g019950.3' => 'sly', 'Sopen02g038610' => 'spe', 'Sopen03g029670' => 'spe', 'Sp1g16010' => 'spa', 'Sp5g28320' => 'spa', 'Sp6g29980' => 'spa', 'TAR371G0948' => 'tar', 'TAR622G0095' => 'tar', 'TAR629G0755' => 'tar', 'TAR629G2546' => 'tar', 'THA.LOC104802368' => 'tha', 'THA.LOC104813932' => 'tha', 'Thecc.02G152700' => 'tca', 'Thecc.03G069500' => 'tca', 'Thecc.04G043700' => 'tca', 'Thhalv10007785m.g' => 'esa', 'Thhalv10013631m.g' => 'esa', 'Thhalv10018609m.g' => 'esa', 'TPR.G18958' => 'tpr', 'TPR.G24687' => 'tpr', 'TPR.G28464' => 'tpr', 'TPR.G484' => 'tpr', 'TPR.G8867' => 'tpr', 'TWI15G0478' => 'twi', 'TWI34G0708' => 'twi', 'TWI60G0804' => 'twi', 'TWI74G1485' => 'twi', 'TWI81G0016' => 'twi', 'unitig_22.g5319' => 'ugi', 'vmacro17749' => 'vma', 'vmacro17750' => 'vma', 'vmacro22235' => 'vma', 'vmacro23369' => 'vma', 'VMungo0464G0827' => 'vmu', 'VMungo0720G1801' => 'vmu', 'VMungo1383G0379' => 'vmu', 'Zm00001eb076730' => 'zma', 'Zm00001eb113060' => 'zma', 'Zm00001eb170190' => 'zma', 'Zm00001eb427060' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001996' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001996' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001996' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001996' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '332', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p06380' => 'bna', 'A06p14000' => 'bna', 'A07p39350' => 'bna', 'A10p24390' => 'bna', 'Aa31LG11G15370' => 'aar', 'Aa31LG4G3660' => 'aar', 'Aa31LG7G2720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2462' => 'aag', 'Actinidia02657' => 'ach', 'Actinidia05868' => 'ach', 'Actinidia34677' => 'ach', 'Ah.11g045350' => 'amhyb', 'AL1G30290' => 'aly', 'AL2G33180' => 'aly', 'AL6G24680' => 'aly', 'Aqoxy3G04327' => 'aox', 'Aqoxy5G03213' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IEW9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.107ZNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B5LVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ZB81I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I8ZWR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8L4QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGG1CT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA1NT7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR4UTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3XDKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDLI1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW78JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1U3RA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9SC1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ7LLZ' => 'arhy', 'AT1G17940' => 'ath', 'AT1G73390' => 'ath', 'AT5G14020' => 'ath', 'ATR0124G046' => 'atr', 'ATR0582G333' => 'atr', 'Atru.chr11.50' => 'acertr', 'Atru.chr11.53' => 'acertr', 'Atru.chr6.2628' => 'acertr', 'Atru.chr9.18' => 'acertr', 'AUR62019723' => 'cqu', 'AUR62035468' => 'cqu', 'AUR62035469' => 'cqu', 'AUR62037850' => 'cqu', 'AUR62041090' => 'cqu', 'BcaB01g05314' => 'bca', 'BcaB03g15056' => 'bca', 'BcaB07g34017' => 'bca', 'BcaB07g34018' => 'bca', 'BcaC03g17499' => 'bca', 'BcaC05g25697' => 'bca', 'BcaC08g46762' => 'bca', 'BolC3t13236H' => 'bol', 'BolC5t30332H' => 'bol', 'BolC6t39796H' => 'bol', 'BolC9t59146H' => 'bol', 'BolC9t59147H' => 'bol', 'BraA03t09967Z' => 'bra', 'BraA06t24538Z' => 'bra', 'BraA07t31484Z' => 'bra', 'BraA10t44505Z' => 'bra', 'C03p07340' => 'bna', 'C05p16320' => 'bna', 'C06p47580' => 'bna', 'C09p63100' => 'bna', 'CAN.G473.81' => 'can', 'CAN.G861.32' => 'can', 'CANSAT80G0367' => 'cansat', 'CARHR018560' => 'chi', 'CARHR066440' => 'chi', 'CARHR066450' => 'chi', 'CARHR199360' => 'chi', 'Carub.0001s1764' => 'cru', 'Carub.0002s2013' => 'cru', 'Carub.0006s1221' => 'cru', 'Ca_08106_v3' => 'car', 'Ca_09929_v3' => 'car', 'Ca_09933_v3' => 'car', 'Ca_25376_v3' => 'car', 'Cc02_g29280' => 'ccan', 'CDE07G1305' => 'cde', 'CDE07G1519' => 'cde', 'Cfa007184' => 'cfa', 'Cfa017804' => 'cfa', 'Ciclev10015370m.g' => 'ccl', 'Ciclev10015430m.g' => 'ccl', 'Ciclev10021034m.g' => 'ccl', 'CiPaw.03G003700' => 'cil', 'CiPaw.15G107400' => 'cil', 'ClCG01G014730' => 'cla', 'ClCG05G013760' => 'cla', 'COL.COLO4_13330' => 'col', 'COL.COLO4_22327' => 'col', 'COL.COLO4_22328' => 'col', 'COL.COLO4_24077' => 'col', 'COL.COLO4_33136' => 'col', 'Cpa.g.sc168.4' => 'cpa', 'Cpa.g.sc168.6' => 'cpa', 'Cpa.g.sc257.5' => 'cpa', 'Cpa.g.sc70.93' => 'cpa', 'CsaV3_1G007600' => 'csa', 'CsaV3_3G026360' => 'csa', 'CSS0010361' => 'camsi', 'CSS0032729' => 'camsi', 'CSS0034595' => 'camsi', 'DCAR_000945' => 'dca', 'DCAR_011407' => 'dca', 'DCAR_014480' => 'dca', 'DCAR_014753' => 'dca', 'Dinv03500' => 'din', 'Dinv03505' => 'din', 'Dinv11734' => 'din', 'Dinv25626' => 'din', 'Duzib084G0350' => 'dzi', 'Duzib132G1176' => 'dzi', 'Duzib147G0925' => 'dzi', 'ECA238G2366' => 'eca', 'ECA246G2407' => 'eca', 'EL10Ac2g03311' => 'bvu', 'EL10Ac6g13376' => 'bvu', 'Eucgr.H00656' => 'egr', 'Eucgr.H03368' => 'egr', 'Eucgr.K02328' => 'egr', 'FAN02G0478' => 'fan', 'FAN02G4394' => 'fan', 'FAN04G1098' => 'fan', 'FAN05G4316' => 'fan', 'FAN08G0392' => 'fan', 'FAN13G1325' => 'fan', 'FAN14G3452' => 'fan', 'FAN18G1139' => 'fan', 'FvH4_5g18540' => 'fve', 'FvH4_6g54080' => 'fve', 'Glyma.09G161900' => 'gma', 'Glyma.10G173800' => 'gma', 'Glyma.16G051000' => 'gma', 'Glyma.16G211100' => 'gma', 'Glyma.19G099600' => 'gma', 'Glyma.20G216500' => 'gma', 'Gohir.A03G090500' => 'ghi', 'Gohir.A03G167700' => 'ghi', 'Gohir.A07G231000' => 'ghi', 'Gohir.A12G272400' => 'ghi', 'Gohir.D02G118500' => 'ghi', 'Gohir.D02G190800' => 'ghi', 'Gohir.D07G238200' => 'ghi', 'Gohir.D12G273100' => 'ghi', 'Gorai.001G274000' => 'gra', 'Gorai.005G135300' => 'gra', 'Gorai.005G213600' => 'gra', 'Gorai.008G293500' => 'gra', 'GSVIVG01024250001' => 'vvi', 'GSVIVG01033018001' => 'vvi', 'GSVIVG01034360001' => 'vvi', 'HanXRQChr03g0093091' => 'han', 'HanXRQChr06g0183511' => 'han', 'HanXRQChr08g0221511' => 'han', 'HanXRQChr13g0397011' => 'han', 'HanXRQChr15g0475801' => 'han', 'HanXRQChr16g0528601' => 'han', 'HanXRQChr17g0551571' => 'han', 'Haze_14925' => 'cav', 'Haze_18409' => 'cav', 'Hma1.2p1_0248F.1_g102040' => 'hma', 'Hma1.2p1_0816F.1_g222960' => 'hma', 'HPP92_014762' => 'vpl', 'HPP92_015005' => 'vpl', 'Hund12857' => 'sun', 'Hund12858' => 'sun', 'Hund13063' => 'sun', 'Hund29415' => 'sun', 'Hund29416' => 'sun', 'Lalb_Chr06g0168661' => 'lal', 'Lalb_Chr14g0363831' => 'lal', 'Lalb_Chr14g0370151' => 'lal', 'Lalb_Chr21g0311681' => 'lal', 'Lj1g0022123' => 'lja', 'Lj2g0017850' => 'lja', 'Lj5A168T93' => 'lonja', 'Lj5g0026773' => 'lja', 'Lj7C614T14' => 'lonja', 'Lj9A411G75' => 'lonja', 'Lsat_1_v5_gn_0_11320' => 'lsa', 'Lsat_1_v5_gn_2_19660' => 'lsa', 'Manes.02G220600' => 'mes', 'Manes.04G090920' => 'mes', 'Manes.04G091001' => 'mes', 'Manes.04G161500' => 'mes', 'Manes.11G079200' => 'mes', 'MBI03_g13445_MAGBIO' => 'mbi', 'MBI06_g12549_MAGBIO' => 'mbi', 'MD06G1240300' => 'mdo', 'MD09G1005600' => 'mdo', 'MD09G1124500' => 'mdo', 'MD10G1018100' => 'mdo', 'MD14G1246500' => 'mdo', 'MD17G1009700' => 'mdo', 'Medtr1g077580' => 'mtr', 'Medtr6g077430' => 'mtr', 'Medtr6g077490' => 'mtr', 'Medtr7g083110' => 'mtr', 'MELO3C002179.2' => 'cme', 'MELO3C014936.2' => 'cme', 'Migut.F00024' => 'egut', 'Migut.O00277' => 'egut', 'MSTRG.11563' => 'ama', 'MSTRG.3053' => 'ama', 'MSTRG.9716' => 'ama', 'Nitab4.5_0000162g0010' => 'nta', 'Nitab4.5_0001495g0060' => 'nta', 'Nitab4.5_0003318g0170' => 'nta', 'Nitab4.5_0007717g0070' => 'nta', 'Nn3g16335' => 'nnu', 'Nn3g18551' => 'nnu', 'Nn4g25177' => 'nnu', 'Oeu020408.1' => 'oeu', 'Oeu057514.3' => 'oeu', 'Oeu062063.1' => 'oeu', 'Os02g0828100' => 'osa', 'Os04g0527400' => 'osa', 'Os11g0514800' => 'osa', 'Peaxi162Scf00171g00132' => 'pax', 'Peaxi162Scf00420g00735' => 'pax', 'Peaxi162Scf01026g00019' => 'pax', 'PGR044G0536' => 'pgr', 'PGR083G0518' => 'pgr', 'PGR083G1912' => 'pgr', 'PGSC0003DMG400015281' => 'stu', 'PGSC0003DMG400018727' => 'stu', 'PGSC0003DMG400020218' => 'stu', 'Phvul.001G087500' => 'pvu', 'Phvul.004G137200' => 'pvu', 'Phvul.L006201' => 'pvu', 'Potri.001G323600' => 'ptr', 'Potri.004G067400' => 'ptr', 'Potri.017G062000' => 'ptr', 'Potri.017G154200' => 'ptr', 'Pp3c10_2740' => 'ppa', 'Pp3c14_9570' => 'ppa', 'Pp3c16_12200' => 'ppa', 'Pp3c2_19570' => 'ppa', 'Pp3c5_5280' => 'ppa', 'Pp3c6_25010' => 'ppa', 'Prupe.3G311400' => 'ppe', 'Prupe.5G244800' => 'ppe', 'Psat3g096040' => 'psa', 'Psat3g187560' => 'psa', 'Psat6g054560' => 'psa', 'PSO017G2277' => 'pso', 'PSO017G2498' => 'pso', 'PSO063G3302' => 'pso', 'PSO170G5286' => 'pso', 'PSO478G0040' => 'pso', 'PSO782G1958' => 'pso', 'QL01p000420' => 'qlo', 'QL01p011503' => 'qlo', 'QL02p070193' => 'qlo', 'QL10p033816' => 'qlo', 'QL10p033825' => 'qlo', 'RcHm_v2.0_Chr2g0176271' => 'rch', 'RcHm_v2.0_Chr7g0176971' => 'rch', 'Rhsim08G0125200' => 'rsi', 'Rhsim10G0002600' => 'rsi', 'Sabra04G0045200' => 'sbr', 'Sabra16G0206300' => 'sbr', 'Sabra17G0056100' => 'sbr', 'Sabra17G0126300' => 'sbr', 'SalBow2G0107' => 'sbo', 'SalBow2G1895' => 'sbo', 'SalBow2G2867' => 'sbo', 'SalBow3G2746' => 'sbo', 'SalBow4G1097' => 'sbo', 'SalBow4G2816' => 'sbo', 'SalBow5G3524' => 'sbo', 'SalBow5G4966' => 'sbo', 'SalBow6G3115' => 'sbo', 'SalBow8G0316' => 'sbo', 'SalBow8G2722' => 'sbo', 'Sc10g0006310' => 'sci', 'Sc10g0006380' => 'sci', 'Sed0006320' => 'sed', 'Sed0011987' => 'sed', 'Sed0016481' => 'sed', 'SEGI_23745' => 'sgi', 'SGA_v2.0_scaffold253G45159' => 'sas', 'SGA_v2.0_scaffold25G10732' => 'sas', 'SHI21153' => 'shi', 'SMO334G0092' => 'smo', 'SMO356G0058' => 'smo', 'Solyc02g093960.3' => 'sly', 'Solyc03g019950.3' => 'sly', 'Sopen02g038610' => 'spe', 'Sopen03g029670' => 'spe', 'Sp1g16010' => 'spa', 'Sp5g28320' => 'spa', 'Sp6g29980' => 'spa', 'TAR371G0948' => 'tar', 'TAR622G0095' => 'tar', 'TAR629G0755' => 'tar', 'TAR629G2546' => 'tar', 'THA.LOC104802368' => 'tha', 'THA.LOC104813932' => 'tha', 'Thecc.02G152700' => 'tca', 'Thecc.03G069500' => 'tca', 'Thecc.04G043700' => 'tca', 'Thhalv10007785m.g' => 'esa', 'Thhalv10013631m.g' => 'esa', 'Thhalv10018609m.g' => 'esa', 'TPR.G18958' => 'tpr', 'TPR.G24687' => 'tpr', 'TPR.G28464' => 'tpr', 'TPR.G484' => 'tpr', 'TPR.G8867' => 'tpr', 'TWI15G0478' => 'twi', 'TWI34G0708' => 'twi', 'TWI60G0804' => 'twi', 'TWI74G1485' => 'twi', 'TWI81G0016' => 'twi', 'unitig_22.g5319' => 'ugi', 'vmacro17749' => 'vma', 'vmacro17750' => 'vma', 'vmacro22235' => 'vma', 'vmacro23369' => 'vma', 'VMungo0464G0827' => 'vmu', 'VMungo0720G1801' => 'vmu', 'VMungo1383G0379' => 'vmu', 'Zm00001eb076730' => 'zma', 'Zm00001eb113060' => 'zma', 'Zm00001eb170190' => 'zma', 'Zm00001eb427060' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001996', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001996' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001996', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '332', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001996' ) ), 'genes' => array( 'A03p06380' => 'bna', 'A06p14000' => 'bna', 'A07p39350' => 'bna', 'A10p24390' => 'bna', 'Aa31LG11G15370' => 'aar', 'Aa31LG4G3660' => 'aar', 'Aa31LG7G2720' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.2461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2462' => 'aag', 'Actinidia02657' => 'ach', 'Actinidia05868' => 'ach', 'Actinidia34677' => 'ach', 'Ah.11g045350' => 'amhyb', 'AL1G30290' => 'aly', 'AL2G33180' => 'aly', 'AL6G24680' => 'aly', 'Aqoxy3G04327' => 'aox', 'Aqoxy5G03213' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0IEW9E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.107ZNT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1B5LVB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6ZB81I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8I8ZWR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C8L4QR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FGG1CT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA1NT7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR4UTH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3XDKU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SDLI1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW78JA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1U3RA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W9SC1J' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WQ7LLZ' => 'arhy', 'AT1G17940' => 'ath', 'AT1G73390' => 'ath', 'AT5G14020' => 'ath', 'ATR0124G046' => 'atr', 'ATR0582G333' => 'atr', 'Atru.chr11.50' => 'acertr', 'Atru.chr11.53' => 'acertr', 'Atru.chr6.2628' => 'acertr', 'Atru.chr9.18' => 'acertr', 'AUR62019723' => 'cqu', 'AUR62035468' => 'cqu', 'AUR62035469' => 'cqu', 'AUR62037850' => 'cqu', 'AUR62041090' => 'cqu', 'BcaB01g05314' => 'bca', 'BcaB03g15056' => 'bca', 'BcaB07g34017' => 'bca', 'BcaB07g34018' => 'bca', 'BcaC03g17499' => 'bca', 'BcaC05g25697' => 'bca', 'BcaC08g46762' => 'bca', 'BolC3t13236H' => 'bol', 'BolC5t30332H' => 'bol', 'BolC6t39796H' => 'bol', 'BolC9t59146H' => 'bol', 'BolC9t59147H' => 'bol', 'BraA03t09967Z' => 'bra', 'BraA06t24538Z' => 'bra', 'BraA07t31484Z' => 'bra', 'BraA10t44505Z' => 'bra', 'C03p07340' => 'bna', 'C05p16320' => 'bna', 'C06p47580' => 'bna', 'C09p63100' => 'bna', 'CAN.G473.81' => 'can', 'CAN.G861.32' => 'can', 'CANSAT80G0367' => 'cansat', 'CARHR018560' => 'chi', 'CARHR066440' => 'chi', 'CARHR066450' => 'chi', 'CARHR199360' => 'chi', 'Carub.0001s1764' => 'cru', 'Carub.0002s2013' => 'cru', 'Carub.0006s1221' => 'cru', 'Ca_08106_v3' => 'car', 'Ca_09929_v3' => 'car', 'Ca_09933_v3' => 'car', 'Ca_25376_v3' => 'car', 'Cc02_g29280' => 'ccan', 'CDE07G1305' => 'cde', 'CDE07G1519' => 'cde', 'Cfa007184' => 'cfa', 'Cfa017804' => 'cfa', 'Ciclev10015370m.g' => 'ccl', 'Ciclev10015430m.g' => 'ccl', 'Ciclev10021034m.g' => 'ccl', 'CiPaw.03G003700' => 'cil', 'CiPaw.15G107400' => 'cil', 'ClCG01G014730' => 'cla', 'ClCG05G013760' => 'cla', 'COL.COLO4_13330' => 'col', 'COL.COLO4_22327' => 'col', 'COL.COLO4_22328' => 'col', 'COL.COLO4_24077' => 'col', 'COL.COLO4_33136' => 'col', 'Cpa.g.sc168.4' => 'cpa', 'Cpa.g.sc168.6' => 'cpa', 'Cpa.g.sc257.5' => 'cpa', 'Cpa.g.sc70.93' => 'cpa', 'CsaV3_1G007600' => 'csa', 'CsaV3_3G026360' => 'csa', 'CSS0010361' => 'camsi', 'CSS0032729' => 'camsi', 'CSS0034595' => 'camsi', 'DCAR_000945' => 'dca', 'DCAR_011407' => 'dca', 'DCAR_014480' => 'dca', 'DCAR_014753' => 'dca', 'Dinv03500' => 'din', 'Dinv03505' => 'din', 'Dinv11734' => 'din', 'Dinv25626' => 'din', 'Duzib084G0350' => 'dzi', 'Duzib132G1176' => 'dzi', 'Duzib147G0925' => 'dzi', 'ECA238G2366' => 'eca', 'ECA246G2407' => 'eca', 'EL10Ac2g03311' => 'bvu', 'EL10Ac6g13376' => 'bvu', 'Eucgr.H00656' => 'egr', 'Eucgr.H03368' => 'egr', 'Eucgr.K02328' => 'egr', 'FAN02G0478' => 'fan', 'FAN02G4394' => 'fan', 'FAN04G1098' => 'fan', 'FAN05G4316' => 'fan', 'FAN08G0392' => 'fan', 'FAN13G1325' => 'fan', 'FAN14G3452' => 'fan', 'FAN18G1139' => 'fan', 'FvH4_5g18540' => 'fve', 'FvH4_6g54080' => 'fve', 'Glyma.09G161900' => 'gma', 'Glyma.10G173800' => 'gma', 'Glyma.16G051000' => 'gma', 'Glyma.16G211100' => 'gma', 'Glyma.19G099600' => 'gma', 'Glyma.20G216500' => 'gma', 'Gohir.A03G090500' => 'ghi', 'Gohir.A03G167700' => 'ghi', 'Gohir.A07G231000' => 'ghi', 'Gohir.A12G272400' => 'ghi', 'Gohir.D02G118500' => 'ghi', 'Gohir.D02G190800' => 'ghi', 'Gohir.D07G238200' => 'ghi', 'Gohir.D12G273100' => 'ghi', 'Gorai.001G274000' => 'gra', 'Gorai.005G135300' => 'gra', 'Gorai.005G213600' => 'gra', 'Gorai.008G293500' => 'gra', 'GSVIVG01024250001' => 'vvi', 'GSVIVG01033018001' => 'vvi', 'GSVIVG01034360001' => 'vvi', 'HanXRQChr03g0093091' => 'han', 'HanXRQChr06g0183511' => 'han', 'HanXRQChr08g0221511' => 'han', 'HanXRQChr13g0397011' => 'han', 'HanXRQChr15g0475801' => 'han', 'HanXRQChr16g0528601' => 'han', 'HanXRQChr17g0551571' => 'han', 'Haze_14925' => 'cav', 'Haze_18409' => 'cav', 'Hma1.2p1_0248F.1_g102040' => 'hma', 'Hma1.2p1_0816F.1_g222960' => 'hma', 'HPP92_014762' => 'vpl', 'HPP92_015005' => 'vpl', 'Hund12857' => 'sun', 'Hund12858' => 'sun', 'Hund13063' => 'sun', 'Hund29415' => 'sun', 'Hund29416' => 'sun', 'Lalb_Chr06g0168661' => 'lal', 'Lalb_Chr14g0363831' => 'lal', 'Lalb_Chr14g0370151' => 'lal', 'Lalb_Chr21g0311681' => 'lal', 'Lj1g0022123' => 'lja', 'Lj2g0017850' => 'lja', 'Lj5A168T93' => 'lonja', 'Lj5g0026773' => 'lja', 'Lj7C614T14' => 'lonja', 'Lj9A411G75' => 'lonja', 'Lsat_1_v5_gn_0_11320' => 'lsa', 'Lsat_1_v5_gn_2_19660' => 'lsa', 'Manes.02G220600' => 'mes', 'Manes.04G090920' => 'mes', 'Manes.04G091001' => 'mes', 'Manes.04G161500' => 'mes', 'Manes.11G079200' => 'mes', 'MBI03_g13445_MAGBIO' => 'mbi', 'MBI06_g12549_MAGBIO' => 'mbi', 'MD06G1240300' => 'mdo', 'MD09G1005600' => 'mdo', 'MD09G1124500' => 'mdo', 'MD10G1018100' => 'mdo', 'MD14G1246500' => 'mdo', 'MD17G1009700' => 'mdo', 'Medtr1g077580' => 'mtr', 'Medtr6g077430' => 'mtr', 'Medtr6g077490' => 'mtr', 'Medtr7g083110' => 'mtr', 'MELO3C002179.2' => 'cme', 'MELO3C014936.2' => 'cme', 'Migut.F00024' => 'egut', 'Migut.O00277' => 'egut', 'MSTRG.11563' => 'ama', 'MSTRG.3053' => 'ama', 'MSTRG.9716' => 'ama', 'Nitab4.5_0000162g0010' => 'nta', 'Nitab4.5_0001495g0060' => 'nta', 'Nitab4.5_0003318g0170' => 'nta', 'Nitab4.5_0007717g0070' => 'nta', 'Nn3g16335' => 'nnu', 'Nn3g18551' => 'nnu', 'Nn4g25177' => 'nnu', 'Oeu020408.1' => 'oeu', 'Oeu057514.3' => 'oeu', 'Oeu062063.1' => 'oeu', 'Os02g0828100' => 'osa', 'Os04g0527400' => 'osa', 'Os11g0514800' => 'osa', 'Peaxi162Scf00171g00132' => 'pax', 'Peaxi162Scf00420g00735' => 'pax', 'Peaxi162Scf01026g00019' => 'pax', 'PGR044G0536' => 'pgr', 'PGR083G0518' => 'pgr', 'PGR083G1912' => 'pgr', 'PGSC0003DMG400015281' => 'stu', 'PGSC0003DMG400018727' => 'stu', 'PGSC0003DMG400020218' => 'stu', 'Phvul.001G087500' => 'pvu', 'Phvul.004G137200' => 'pvu', 'Phvul.L006201' => 'pvu', 'Potri.001G323600' => 'ptr', 'Potri.004G067400' => 'ptr', 'Potri.017G062000' => 'ptr', 'Potri.017G154200' => 'ptr', 'Pp3c10_2740' => 'ppa', 'Pp3c14_9570' => 'ppa', 'Pp3c16_12200' => 'ppa', 'Pp3c2_19570' => 'ppa', 'Pp3c5_5280' => 'ppa', 'Pp3c6_25010' => 'ppa', 'Prupe.3G311400' => 'ppe', 'Prupe.5G244800' => 'ppe', 'Psat3g096040' => 'psa', 'Psat3g187560' => 'psa', 'Psat6g054560' => 'psa', 'PSO017G2277' => 'pso', 'PSO017G2498' => 'pso', 'PSO063G3302' => 'pso', 'PSO170G5286' => 'pso', 'PSO478G0040' => 'pso', 'PSO782G1958' => 'pso', 'QL01p000420' => 'qlo', 'QL01p011503' => 'qlo', 'QL02p070193' => 'qlo', 'QL10p033816' => 'qlo', 'QL10p033825' => 'qlo', 'RcHm_v2.0_Chr2g0176271' => 'rch', 'RcHm_v2.0_Chr7g0176971' => 'rch', 'Rhsim08G0125200' => 'rsi', 'Rhsim10G0002600' => 'rsi', 'Sabra04G0045200' => 'sbr', 'Sabra16G0206300' => 'sbr', 'Sabra17G0056100' => 'sbr', 'Sabra17G0126300' => 'sbr', 'SalBow2G0107' => 'sbo', 'SalBow2G1895' => 'sbo', 'SalBow2G2867' => 'sbo', 'SalBow3G2746' => 'sbo', 'SalBow4G1097' => 'sbo', 'SalBow4G2816' => 'sbo', 'SalBow5G3524' => 'sbo', 'SalBow5G4966' => 'sbo', 'SalBow6G3115' => 'sbo', 'SalBow8G0316' => 'sbo', 'SalBow8G2722' => 'sbo', 'Sc10g0006310' => 'sci', 'Sc10g0006380' => 'sci', 'Sed0006320' => 'sed', 'Sed0011987' => 'sed', 'Sed0016481' => 'sed', 'SEGI_23745' => 'sgi', 'SGA_v2.0_scaffold253G45159' => 'sas', 'SGA_v2.0_scaffold25G10732' => 'sas', 'SHI21153' => 'shi', 'SMO334G0092' => 'smo', 'SMO356G0058' => 'smo', 'Solyc02g093960.3' => 'sly', 'Solyc03g019950.3' => 'sly', 'Sopen02g038610' => 'spe', 'Sopen03g029670' => 'spe', 'Sp1g16010' => 'spa', 'Sp5g28320' => 'spa', 'Sp6g29980' => 'spa', 'TAR371G0948' => 'tar', 'TAR622G0095' => 'tar', 'TAR629G0755' => 'tar', 'TAR629G2546' => 'tar', 'THA.LOC104802368' => 'tha', 'THA.LOC104813932' => 'tha', 'Thecc.02G152700' => 'tca', 'Thecc.03G069500' => 'tca', 'Thecc.04G043700' => 'tca', 'Thhalv10007785m.g' => 'esa', 'Thhalv10013631m.g' => 'esa', 'Thhalv10018609m.g' => 'esa', 'TPR.G18958' => 'tpr', 'TPR.G24687' => 'tpr', 'TPR.G28464' => 'tpr', 'TPR.G484' => 'tpr', 'TPR.G8867' => 'tpr', 'TWI15G0478' => 'twi', 'TWI34G0708' => 'twi', 'TWI60G0804' => 'twi', 'TWI74G1485' => 'twi', 'TWI81G0016' => 'twi', 'unitig_22.g5319' => 'ugi', 'vmacro17749' => 'vma', 'vmacro17750' => 'vma', 'vmacro22235' => 'vma', 'vmacro23369' => 'vma', 'VMungo0464G0827' => 'vmu', 'VMungo0720G1801' => 'vmu', 'VMungo1383G0379' => 'vmu', 'Zm00001eb076730' => 'zma', 'Zm00001eb113060' => 'zma', 'Zm00001eb170190' => 'zma', 'Zm00001eb427060' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001996' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001996' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001996' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001996' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151