Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001977', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '334', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p31930' => 'bna', 'A09p00140' => 'bna', 'A10p31610' => 'bna', 'Aa31LG11G5350' => 'aar', 'Aa31LG5G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.909' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1731' => 'aag', 'Actinidia10087' => 'ach', 'Actinidia20139' => 'ach', 'Actinidia34785' => 'ach', 'Actinidia38895' => 'ach', 'Actinidia38896' => 'ach', 'Ah.05g180040' => 'amhyb', 'Ah.05g180050' => 'amhyb', 'Ah.09g232520' => 'amhyb', 'Ah.09g232530' => 'amhyb', 'AL6G14110' => 'aly', 'AL6G52170' => 'aly', 'Aqoxy1G01034' => 'aox', 'Aqoxy1G01052' => 'aox', 'Aqoxy1G01053' => 'aox', 'Aqoxy5G04047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74524Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ31U7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G6UQCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW0VG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5BQMH' => 'arhy', 'AT4G01210' => 'ath', 'AT5G04480' => 'ath', 'ATR0105G029' => 'atr', 'ATR0109G019' => 'atr', 'ATR0661G098' => 'atr', 'ATR0661G166' => 'atr', 'ATR0661G249' => 'atr', 'ATR0661G502' => 'atr', 'Atru.chr12.922' => 'acertr', 'Atru.chr5.605' => 'acertr', 'AUR62002711' => 'cqu', 'AUR62004428' => 'cqu', 'AUR62022635' => 'cqu', 'AUR62030172' => 'cqu', 'BcaB01g02326' => 'bca', 'BcaB05g21759' => 'bca', 'BcaC01g06850' => 'bca', 'BcaC03g12947' => 'bca', 'BcaC04g24132' => 'bca', 'BcaC06g32157' => 'bca', 'BolC2t06152H' => 'bol', 'BolC2t09840H' => 'bol', 'BolC3t16167H' => 'bol', 'BolC9t53010H' => 'bol', 'BolC9t59972H' => 'bol', 'BraA02t07415Z' => 'bra', 'BraA03t12365Z' => 'bra', 'BraA09t35742Z' => 'bra', 'BraA10t45207Z' => 'bra', 'C02p01950' => 'bna', 'C02p38250' => 'bna', 'C03p38950' => 'bna', 'C09p00760' => 'bna', 'C09p72280' => 'bna', 'CAN.G135.31' => 'can', 'CAN.G48.14' => 'can', 'CAN.G529.46' => 'can', 'CAN.G78.143' => 'can', 'CANSAT56G0646' => 'cansat', 'CANSAT56G4081' => 'cansat', 'CARHR208790' => 'chi', 'CARHR249090' => 'chi', 'Carub.0006s0341' => 'cru', 'Carub.0006s3625' => 'cru', 'Ca_10462_v3' => 'car', 'Ca_23547_v3' => 'car', 'Ca_30879_v3' => 'car', 'CBR_g8119' => 'cbr', 'Cc02_g10480' => 'ccan', 'Cc02_g38760' => 'ccan', 'CDE02G1209' => 'cde', 'CDE02G1402' => 'cde', 'CDE09G0544' => 'cde', 'Cfa001769' => 'cfa', 'Cfa003855' => 'cfa', 'Ciclev10018649m.g' => 'ccl', 'Ciclev10030581m.g' => 'ccl', 'CiPaw.01G069600' => 'cil', 'CiPaw.01G264500' => 'cil', 'CiPaw.02G037200' => 'cil', 'CiPaw.02G169700' => 'cil', 'ClCG00G004460' => 'cla', 'ClCG05G021470' => 'cla', 'ClCG06G003320' => 'cla', 'ClCG08G007970' => 'cla', 'COL.COLO4_06362' => 'col', 'COL.COLO4_07703' => 'col', 'COL.COLO4_34160' => 'col', 'Cpa.g.sc128.71' => 'cpa', 'Cpa.g.sc128.72' => 'cpa', 'Cpa.g.sc184.12' => 'cpa', 'CsaV3_2G032790' => 'csa', 'CsaV3_5G035780' => 'csa', 'CsaV3_5G036220' => 'csa', 'CsaV3_6G000960' => 'csa', 'CSS0023193' => 'camsi', 'CSS0026488' => 'camsi', 'CSS0035481' => 'camsi', 'CSS0043665' => 'camsi', 'DCAR_006957' => 'dca', 'DCAR_019055' => 'dca', 'Dinv20857' => 'din', 'Dinv32535' => 'din', 'Dinv43879' => 'din', 'Duzib114G0892' => 'dzi', 'Duzib128G0497' => 'dzi', 'Duzib133G0786' => 'dzi', 'Duzib138G0834' => 'dzi', 'Duzib235G0159' => 'dzi', 'ECA233G0301' => 'eca', 'ECA234G3284' => 'eca', 'ECA240G2267' => 'eca', 'EL10Ac1g00336' => 'bvu', 'EL10Ac8g19652' => 'bvu', 'Eucgr.E00083' => 'egr', 'Eucgr.G02730' => 'egr', 'FAN01G0097' => 'fan', 'FAN01G0828' => 'fan', 'FAN03G1732' => 'fan', 'FAN03G2995' => 'fan', 'FAN06G3150' => 'fan', 'FAN06G3444' => 'fan', 'FAN06G3533' => 'fan', 'FAN10G0843' => 'fan', 'FAN10G4099' => 'fan', 'FvH4_7g06830' => 'fve', 'FvH4_7g15660' => 'fve', 'Glyma.07G062100' => 'gma', 'Glyma.10G200000' => 'gma', 'Glyma.16G030100' => 'gma', 'Glyma.20G190500' => 'gma', 'Gohir.A05G290600' => 'ghi', 'Gohir.A08G127200' => 'ghi', 'Gohir.A11G093200' => 'ghi', 'Gohir.D05G291800' => 'ghi', 'Gohir.D08G148600' => 'ghi', 'Gohir.D11G098100' => 'ghi', 'Gorai.004G154300' => 'gra', 'Gorai.007G104300' => 'gra', 'Gorai.009G307600' => 'gra', 'GSVIVG01005024001' => 'vvi', 'GSVIVG01027020001' => 'vvi', 'HanXRQChr02g0051931' => 'han', 'HanXRQChr06g0166941' => 'han', 'HanXRQChr08g0218341' => 'han', 'HanXRQChr16g0523821' => 'han', 'HanXRQChr17g0562251' => 'han', 'Haze_15594' => 'cav', 'Haze_16787' => 'cav', 'Hma1.2p1_0361F.1_g135940' => 'hma', 'Hma1.2p1_0783F.1_g217010' => 'hma', 'HPP92_011535' => 'vpl', 'HPP92_022570' => 'vpl', 'Hund16682' => 'sun', 'Hund17861' => 'sun', 'Hund27234' => 'sun', 'Lalb_Chr02g0151191' => 'lal', 'Lalb_Chr06g0170061' => 'lal', 'Lalb_Chr10g0096531' => 'lal', 'Lalb_Chr17g0338911' => 'lal', 'Lalb_Chr24g0401121' => 'lal', 'Lj2C25G10' => 'lonja', 'Lj3C337T0' => 'lonja', 'Lj3C337T1' => 'lonja', 'Lj3g0010045' => 'lja', 'Lj5g0026880' => 'lja', 'Lj7C505G15' => 'lonja', 'Lj9C594T10' => 'lonja', 'LjContig00435g0005269' => 'lja', 'Lsat_1_v5_gn_3_138461' => 'lsa', 'Lsat_1_v5_gn_4_34080' => 'lsa', 'Lsat_1_v5_gn_5_8501' => 'lsa', 'Lsat_1_v5_gn_6_25500' => 'lsa', 'Lsat_1_v5_gn_7_27840' => 'lsa', 'Lsat_1_v5_gn_8_22761' => 'lsa', 'Manes.01G251000' => 'mes', 'Manes.05G027800' => 'mes', 'Manes.07G093200' => 'mes', 'Mapoly0032s0054' => 'mpo', 'Mapoly0058s0074' => 'mpo', 'Mapoly0073s0095' => 'mpo', 'Mapoly0134s0051' => 'mpo', 'MBI02_g25599_MAGBIO' => 'mbi', 'MBI07_g06317_MAGBIO' => 'mbi', 'MBI07_g45739_MAGBIO' => 'mbi', 'MBI07_g45740_MAGBIO' => 'mbi', 'MBI15_g00068_MAGBIO' => 'mbi', 'MBI15_g22169_MAGBIO' => 'mbi', 'MD01G1073400' => 'mdo', 'MD02G1241600' => 'mdo', 'MD07G1075100' => 'mdo', 'MD07G1075200' => 'mdo', 'Medtr1g090860' => 'mtr', 'Medtr7g012910' => 'mtr', 'Medtr8g028395' => 'mtr', 'MELO3C012379.2' => 'cme', 'MELO3C012422.2' => 'cme', 'MELO3C019854.2' => 'cme', 'MELO3C021173.2' => 'cme', 'Migut.B01815' => 'egut', 'Migut.F01670' => 'egut', 'Migut.N01578' => 'egut', 'MSTRG.20874' => 'ama', 'MSTRG.4828' => 'ama', 'MSTRG.8116' => 'ama', 'Nitab4.5_0000305g0380' => 'nta', 'Nitab4.5_0000593g0320' => 'nta', 'Nitab4.5_0004748g0030' => 'nta', 'Nitab4.5_0006383g0020' => 'nta', 'Nn1g01751' => 'nnu', 'Nn2g13906' => 'nnu', 'Nn6g35162' => 'nnu', 'Nn6g35163' => 'nnu', 'Nn6g35164' => 'nnu', 'Nn6g35168' => 'nnu', 'Nn7g37330' => 'nnu', 'Nn7g37331' => 'nnu', 'Nn8g38871' => 'nnu', 'Oeu004919.1' => 'oeu', 'Oeu022857.1' => 'oeu', 'Oeu060291.1' => 'oeu', 'Os01g0622000' => 'osa', 'Os01g0622066' => 'osa', 'Os10g0546200' => 'osa', 'Peaxi162Scf00321g00216' => 'pax', 'Peaxi162Scf01254g00029' => 'pax', 'PGR042G1970' => 'pgr', 'PGR142G3455' => 'pgr', 'PGSC0003DMG400000078' => 'stu', 'PGSC0003DMG400000261' => 'stu', 'PGSC0003DMG400027328' => 'stu', 'Phvul.007G141200' => 'pvu', 'Phvul.010G105900' => 'pvu', 'Potri.002G166100' => 'ptr', 'Potri.008G029400' => 'ptr', 'Potri.010G232000' => 'ptr', 'Potri.014G092500' => 'ptr', 'Pp3c18_17630' => 'ppa', 'Pp3c21_5280' => 'ppa', 'Prupe.2G095400' => 'ppe', 'Prupe.2G179800' => 'ppe', 'Psat4g157160' => 'psa', 'Psat6g174080' => 'psa', 'PSO063G1346' => 'pso', 'PSO063G6918' => 'pso', 'PSO170G3647' => 'pso', 'PSO339G4809' => 'pso', 'QL03p035321' => 'qlo', 'QL04p058948' => 'qlo', 'QL08p052911' => 'qlo', 'RcHm_v2.0_Chr1g0336581' => 'rch', 'RcHm_v2.0_Chr1g0358361' => 'rch', 'RcHm_v2.0_Chr1g0358371' => 'rch', 'Rhsim01G0168400' => 'rsi', 'Rhsim07G0008900' => 'rsi', 'Rhsim09G0144800' => 'rsi', 'Rhsim11G0144700' => 'rsi', 'RhsimUnG0170000' => 'rsi', 'Sabra02G0145500' => 'sbr', 'Sabra10G0179800' => 'sbr', 'Sabra14G0067100' => 'sbr', 'SalBow3G1047' => 'sbo', 'SalBow5G5061' => 'sbo', 'SalBow6G5918' => 'sbo', 'Sc01g0003110' => 'sci', 'Sc20g0001430' => 'sci', 'Sc23g0002440' => 'sci', 'Sed0009109' => 'sed', 'Sed0011280' => 'sed', 'Sed0012656' => 'sed', 'Sed0024460' => 'sed', 'SEGI_04246' => 'sgi', 'SEGI_12246' => 'sgi', 'SEGI_24653' => 'sgi', 'SEGI_29760' => 'sgi', 'SEGI_35759' => 'sgi', 'SEGI_36466' => 'sgi', 'SGA_v2.0_scaffold112G31629' => 'sas', 'SGA_v2.0_scaffold11G05700' => 'sas', 'SGA_v2.0_scaffold43G16387' => 'sas', 'SGA_v2.0_scaffold62G21511' => 'sas', 'SHI21331' => 'shi', 'SHI21332' => 'shi', 'SHI21333' => 'shi', 'SHI21337' => 'shi', 'SMO200G0158' => 'smo', 'SMO200G0232' => 'smo', 'SMO278G0014' => 'smo', 'SMO278G0028' => 'smo', 'Solyc01g095300.3' => 'sly', 'Solyc11g007840.3' => 'sly', 'Sopen01g039090' => 'spe', 'Sopen11g003700' => 'spe', 'Sp6g00910' => 'spa', 'Sp6g38270' => 'spa', 'TAR374G0937' => 'tar', 'TAR375G0481' => 'tar', 'TAR623G0581' => 'tar', 'THA.LOC104801379' => 'tha', 'THA.LOC104816682' => 'tha', 'THA.LOC104825864' => 'tha', 'Thecc.01G350000' => 'tca', 'Thecc.10G091100' => 'tca', 'Thhalv10012611m.g' => 'esa', 'Thhalv10028385m.g' => 'esa', 'TPR.G18147' => 'tpr', 'TPR.G37850' => 'tpr', 'TPR.G39986' => 'tpr', 'TWI14G0955' => 'twi', 'TWI23G0084' => 'twi', 'TWI38G1322' => 'twi', 'TWI63G1114' => 'twi', 'unitig_62.g23805' => 'ugi', 'unitig_62.g23806' => 'ugi', 'unitig_736.g22317' => 'ugi', 'vmacro10265' => 'vma', 'vmacro13213' => 'vma', 'vmacro13214' => 'vma', 'vmacro15010' => 'vma', 'vmacro20876' => 'vma', 'VMungo0331G0360' => 'vmu', 'VMungo0720G1029' => 'vmu', 'Zm00001eb159550' => 'zma', 'Zm00001eb358450' => 'zma', 'Zm00001eb358480' => 'zma', 'Zm00001eb358490' => 'zma', 'Zm00001eb392000' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001977', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001977' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001977', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '334', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001977' ) ), 'genes' => array( 'A03p31930' => 'bna', 'A09p00140' => 'bna', 'A10p31610' => 'bna', 'Aa31LG11G5350' => 'aar', 'Aa31LG5G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.909' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1731' => 'aag', 'Actinidia10087' => 'ach', 'Actinidia20139' => 'ach', 'Actinidia34785' => 'ach', 'Actinidia38895' => 'ach', 'Actinidia38896' => 'ach', 'Ah.05g180040' => 'amhyb', 'Ah.05g180050' => 'amhyb', 'Ah.09g232520' => 'amhyb', 'Ah.09g232530' => 'amhyb', 'AL6G14110' => 'aly', 'AL6G52170' => 'aly', 'Aqoxy1G01034' => 'aox', 'Aqoxy1G01052' => 'aox', 'Aqoxy1G01053' => 'aox', 'Aqoxy5G04047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74524Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ31U7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G6UQCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW0VG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5BQMH' => 'arhy', 'AT4G01210' => 'ath', 'AT5G04480' => 'ath', 'ATR0105G029' => 'atr', 'ATR0109G019' => 'atr', 'ATR0661G098' => 'atr', 'ATR0661G166' => 'atr', 'ATR0661G249' => 'atr', 'ATR0661G502' => 'atr', 'Atru.chr12.922' => 'acertr', 'Atru.chr5.605' => 'acertr', 'AUR62002711' => 'cqu', 'AUR62004428' => 'cqu', 'AUR62022635' => 'cqu', 'AUR62030172' => 'cqu', 'BcaB01g02326' => 'bca', 'BcaB05g21759' => 'bca', 'BcaC01g06850' => 'bca', 'BcaC03g12947' => 'bca', 'BcaC04g24132' => 'bca', 'BcaC06g32157' => 'bca', 'BolC2t06152H' => 'bol', 'BolC2t09840H' => 'bol', 'BolC3t16167H' => 'bol', 'BolC9t53010H' => 'bol', 'BolC9t59972H' => 'bol', 'BraA02t07415Z' => 'bra', 'BraA03t12365Z' => 'bra', 'BraA09t35742Z' => 'bra', 'BraA10t45207Z' => 'bra', 'C02p01950' => 'bna', 'C02p38250' => 'bna', 'C03p38950' => 'bna', 'C09p00760' => 'bna', 'C09p72280' => 'bna', 'CAN.G135.31' => 'can', 'CAN.G48.14' => 'can', 'CAN.G529.46' => 'can', 'CAN.G78.143' => 'can', 'CANSAT56G0646' => 'cansat', 'CANSAT56G4081' => 'cansat', 'CARHR208790' => 'chi', 'CARHR249090' => 'chi', 'Carub.0006s0341' => 'cru', 'Carub.0006s3625' => 'cru', 'Ca_10462_v3' => 'car', 'Ca_23547_v3' => 'car', 'Ca_30879_v3' => 'car', 'CBR_g8119' => 'cbr', 'Cc02_g10480' => 'ccan', 'Cc02_g38760' => 'ccan', 'CDE02G1209' => 'cde', 'CDE02G1402' => 'cde', 'CDE09G0544' => 'cde', 'Cfa001769' => 'cfa', 'Cfa003855' => 'cfa', 'Ciclev10018649m.g' => 'ccl', 'Ciclev10030581m.g' => 'ccl', 'CiPaw.01G069600' => 'cil', 'CiPaw.01G264500' => 'cil', 'CiPaw.02G037200' => 'cil', 'CiPaw.02G169700' => 'cil', 'ClCG00G004460' => 'cla', 'ClCG05G021470' => 'cla', 'ClCG06G003320' => 'cla', 'ClCG08G007970' => 'cla', 'COL.COLO4_06362' => 'col', 'COL.COLO4_07703' => 'col', 'COL.COLO4_34160' => 'col', 'Cpa.g.sc128.71' => 'cpa', 'Cpa.g.sc128.72' => 'cpa', 'Cpa.g.sc184.12' => 'cpa', 'CsaV3_2G032790' => 'csa', 'CsaV3_5G035780' => 'csa', 'CsaV3_5G036220' => 'csa', 'CsaV3_6G000960' => 'csa', 'CSS0023193' => 'camsi', 'CSS0026488' => 'camsi', 'CSS0035481' => 'camsi', 'CSS0043665' => 'camsi', 'DCAR_006957' => 'dca', 'DCAR_019055' => 'dca', 'Dinv20857' => 'din', 'Dinv32535' => 'din', 'Dinv43879' => 'din', 'Duzib114G0892' => 'dzi', 'Duzib128G0497' => 'dzi', 'Duzib133G0786' => 'dzi', 'Duzib138G0834' => 'dzi', 'Duzib235G0159' => 'dzi', 'ECA233G0301' => 'eca', 'ECA234G3284' => 'eca', 'ECA240G2267' => 'eca', 'EL10Ac1g00336' => 'bvu', 'EL10Ac8g19652' => 'bvu', 'Eucgr.E00083' => 'egr', 'Eucgr.G02730' => 'egr', 'FAN01G0097' => 'fan', 'FAN01G0828' => 'fan', 'FAN03G1732' => 'fan', 'FAN03G2995' => 'fan', 'FAN06G3150' => 'fan', 'FAN06G3444' => 'fan', 'FAN06G3533' => 'fan', 'FAN10G0843' => 'fan', 'FAN10G4099' => 'fan', 'FvH4_7g06830' => 'fve', 'FvH4_7g15660' => 'fve', 'Glyma.07G062100' => 'gma', 'Glyma.10G200000' => 'gma', 'Glyma.16G030100' => 'gma', 'Glyma.20G190500' => 'gma', 'Gohir.A05G290600' => 'ghi', 'Gohir.A08G127200' => 'ghi', 'Gohir.A11G093200' => 'ghi', 'Gohir.D05G291800' => 'ghi', 'Gohir.D08G148600' => 'ghi', 'Gohir.D11G098100' => 'ghi', 'Gorai.004G154300' => 'gra', 'Gorai.007G104300' => 'gra', 'Gorai.009G307600' => 'gra', 'GSVIVG01005024001' => 'vvi', 'GSVIVG01027020001' => 'vvi', 'HanXRQChr02g0051931' => 'han', 'HanXRQChr06g0166941' => 'han', 'HanXRQChr08g0218341' => 'han', 'HanXRQChr16g0523821' => 'han', 'HanXRQChr17g0562251' => 'han', 'Haze_15594' => 'cav', 'Haze_16787' => 'cav', 'Hma1.2p1_0361F.1_g135940' => 'hma', 'Hma1.2p1_0783F.1_g217010' => 'hma', 'HPP92_011535' => 'vpl', 'HPP92_022570' => 'vpl', 'Hund16682' => 'sun', 'Hund17861' => 'sun', 'Hund27234' => 'sun', 'Lalb_Chr02g0151191' => 'lal', 'Lalb_Chr06g0170061' => 'lal', 'Lalb_Chr10g0096531' => 'lal', 'Lalb_Chr17g0338911' => 'lal', 'Lalb_Chr24g0401121' => 'lal', 'Lj2C25G10' => 'lonja', 'Lj3C337T0' => 'lonja', 'Lj3C337T1' => 'lonja', 'Lj3g0010045' => 'lja', 'Lj5g0026880' => 'lja', 'Lj7C505G15' => 'lonja', 'Lj9C594T10' => 'lonja', 'LjContig00435g0005269' => 'lja', 'Lsat_1_v5_gn_3_138461' => 'lsa', 'Lsat_1_v5_gn_4_34080' => 'lsa', 'Lsat_1_v5_gn_5_8501' => 'lsa', 'Lsat_1_v5_gn_6_25500' => 'lsa', 'Lsat_1_v5_gn_7_27840' => 'lsa', 'Lsat_1_v5_gn_8_22761' => 'lsa', 'Manes.01G251000' => 'mes', 'Manes.05G027800' => 'mes', 'Manes.07G093200' => 'mes', 'Mapoly0032s0054' => 'mpo', 'Mapoly0058s0074' => 'mpo', 'Mapoly0073s0095' => 'mpo', 'Mapoly0134s0051' => 'mpo', 'MBI02_g25599_MAGBIO' => 'mbi', 'MBI07_g06317_MAGBIO' => 'mbi', 'MBI07_g45739_MAGBIO' => 'mbi', 'MBI07_g45740_MAGBIO' => 'mbi', 'MBI15_g00068_MAGBIO' => 'mbi', 'MBI15_g22169_MAGBIO' => 'mbi', 'MD01G1073400' => 'mdo', 'MD02G1241600' => 'mdo', 'MD07G1075100' => 'mdo', 'MD07G1075200' => 'mdo', 'Medtr1g090860' => 'mtr', 'Medtr7g012910' => 'mtr', 'Medtr8g028395' => 'mtr', 'MELO3C012379.2' => 'cme', 'MELO3C012422.2' => 'cme', 'MELO3C019854.2' => 'cme', 'MELO3C021173.2' => 'cme', 'Migut.B01815' => 'egut', 'Migut.F01670' => 'egut', 'Migut.N01578' => 'egut', 'MSTRG.20874' => 'ama', 'MSTRG.4828' => 'ama', 'MSTRG.8116' => 'ama', 'Nitab4.5_0000305g0380' => 'nta', 'Nitab4.5_0000593g0320' => 'nta', 'Nitab4.5_0004748g0030' => 'nta', 'Nitab4.5_0006383g0020' => 'nta', 'Nn1g01751' => 'nnu', 'Nn2g13906' => 'nnu', 'Nn6g35162' => 'nnu', 'Nn6g35163' => 'nnu', 'Nn6g35164' => 'nnu', 'Nn6g35168' => 'nnu', 'Nn7g37330' => 'nnu', 'Nn7g37331' => 'nnu', 'Nn8g38871' => 'nnu', 'Oeu004919.1' => 'oeu', 'Oeu022857.1' => 'oeu', 'Oeu060291.1' => 'oeu', 'Os01g0622000' => 'osa', 'Os01g0622066' => 'osa', 'Os10g0546200' => 'osa', 'Peaxi162Scf00321g00216' => 'pax', 'Peaxi162Scf01254g00029' => 'pax', 'PGR042G1970' => 'pgr', 'PGR142G3455' => 'pgr', 'PGSC0003DMG400000078' => 'stu', 'PGSC0003DMG400000261' => 'stu', 'PGSC0003DMG400027328' => 'stu', 'Phvul.007G141200' => 'pvu', 'Phvul.010G105900' => 'pvu', 'Potri.002G166100' => 'ptr', 'Potri.008G029400' => 'ptr', 'Potri.010G232000' => 'ptr', 'Potri.014G092500' => 'ptr', 'Pp3c18_17630' => 'ppa', 'Pp3c21_5280' => 'ppa', 'Prupe.2G095400' => 'ppe', 'Prupe.2G179800' => 'ppe', 'Psat4g157160' => 'psa', 'Psat6g174080' => 'psa', 'PSO063G1346' => 'pso', 'PSO063G6918' => 'pso', 'PSO170G3647' => 'pso', 'PSO339G4809' => 'pso', 'QL03p035321' => 'qlo', 'QL04p058948' => 'qlo', 'QL08p052911' => 'qlo', 'RcHm_v2.0_Chr1g0336581' => 'rch', 'RcHm_v2.0_Chr1g0358361' => 'rch', 'RcHm_v2.0_Chr1g0358371' => 'rch', 'Rhsim01G0168400' => 'rsi', 'Rhsim07G0008900' => 'rsi', 'Rhsim09G0144800' => 'rsi', 'Rhsim11G0144700' => 'rsi', 'RhsimUnG0170000' => 'rsi', 'Sabra02G0145500' => 'sbr', 'Sabra10G0179800' => 'sbr', 'Sabra14G0067100' => 'sbr', 'SalBow3G1047' => 'sbo', 'SalBow5G5061' => 'sbo', 'SalBow6G5918' => 'sbo', 'Sc01g0003110' => 'sci', 'Sc20g0001430' => 'sci', 'Sc23g0002440' => 'sci', 'Sed0009109' => 'sed', 'Sed0011280' => 'sed', 'Sed0012656' => 'sed', 'Sed0024460' => 'sed', 'SEGI_04246' => 'sgi', 'SEGI_12246' => 'sgi', 'SEGI_24653' => 'sgi', 'SEGI_29760' => 'sgi', 'SEGI_35759' => 'sgi', 'SEGI_36466' => 'sgi', 'SGA_v2.0_scaffold112G31629' => 'sas', 'SGA_v2.0_scaffold11G05700' => 'sas', 'SGA_v2.0_scaffold43G16387' => 'sas', 'SGA_v2.0_scaffold62G21511' => 'sas', 'SHI21331' => 'shi', 'SHI21332' => 'shi', 'SHI21333' => 'shi', 'SHI21337' => 'shi', 'SMO200G0158' => 'smo', 'SMO200G0232' => 'smo', 'SMO278G0014' => 'smo', 'SMO278G0028' => 'smo', 'Solyc01g095300.3' => 'sly', 'Solyc11g007840.3' => 'sly', 'Sopen01g039090' => 'spe', 'Sopen11g003700' => 'spe', 'Sp6g00910' => 'spa', 'Sp6g38270' => 'spa', 'TAR374G0937' => 'tar', 'TAR375G0481' => 'tar', 'TAR623G0581' => 'tar', 'THA.LOC104801379' => 'tha', 'THA.LOC104816682' => 'tha', 'THA.LOC104825864' => 'tha', 'Thecc.01G350000' => 'tca', 'Thecc.10G091100' => 'tca', 'Thhalv10012611m.g' => 'esa', 'Thhalv10028385m.g' => 'esa', 'TPR.G18147' => 'tpr', 'TPR.G37850' => 'tpr', 'TPR.G39986' => 'tpr', 'TWI14G0955' => 'twi', 'TWI23G0084' => 'twi', 'TWI38G1322' => 'twi', 'TWI63G1114' => 'twi', 'unitig_62.g23805' => 'ugi', 'unitig_62.g23806' => 'ugi', 'unitig_736.g22317' => 'ugi', 'vmacro10265' => 'vma', 'vmacro13213' => 'vma', 'vmacro13214' => 'vma', 'vmacro15010' => 'vma', 'vmacro20876' => 'vma', 'VMungo0331G0360' => 'vmu', 'VMungo0720G1029' => 'vmu', 'Zm00001eb159550' => 'zma', 'Zm00001eb358450' => 'zma', 'Zm00001eb358480' => 'zma', 'Zm00001eb358490' => 'zma', 'Zm00001eb392000' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001977' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001977' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001977' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001977' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001977', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '334', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p31930' => 'bna', 'A09p00140' => 'bna', 'A10p31610' => 'bna', 'Aa31LG11G5350' => 'aar', 'Aa31LG5G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.909' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1731' => 'aag', 'Actinidia10087' => 'ach', 'Actinidia20139' => 'ach', 'Actinidia34785' => 'ach', 'Actinidia38895' => 'ach', 'Actinidia38896' => 'ach', 'Ah.05g180040' => 'amhyb', 'Ah.05g180050' => 'amhyb', 'Ah.09g232520' => 'amhyb', 'Ah.09g232530' => 'amhyb', 'AL6G14110' => 'aly', 'AL6G52170' => 'aly', 'Aqoxy1G01034' => 'aox', 'Aqoxy1G01052' => 'aox', 'Aqoxy1G01053' => 'aox', 'Aqoxy5G04047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74524Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ31U7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G6UQCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW0VG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5BQMH' => 'arhy', 'AT4G01210' => 'ath', 'AT5G04480' => 'ath', 'ATR0105G029' => 'atr', 'ATR0109G019' => 'atr', 'ATR0661G098' => 'atr', 'ATR0661G166' => 'atr', 'ATR0661G249' => 'atr', 'ATR0661G502' => 'atr', 'Atru.chr12.922' => 'acertr', 'Atru.chr5.605' => 'acertr', 'AUR62002711' => 'cqu', 'AUR62004428' => 'cqu', 'AUR62022635' => 'cqu', 'AUR62030172' => 'cqu', 'BcaB01g02326' => 'bca', 'BcaB05g21759' => 'bca', 'BcaC01g06850' => 'bca', 'BcaC03g12947' => 'bca', 'BcaC04g24132' => 'bca', 'BcaC06g32157' => 'bca', 'BolC2t06152H' => 'bol', 'BolC2t09840H' => 'bol', 'BolC3t16167H' => 'bol', 'BolC9t53010H' => 'bol', 'BolC9t59972H' => 'bol', 'BraA02t07415Z' => 'bra', 'BraA03t12365Z' => 'bra', 'BraA09t35742Z' => 'bra', 'BraA10t45207Z' => 'bra', 'C02p01950' => 'bna', 'C02p38250' => 'bna', 'C03p38950' => 'bna', 'C09p00760' => 'bna', 'C09p72280' => 'bna', 'CAN.G135.31' => 'can', 'CAN.G48.14' => 'can', 'CAN.G529.46' => 'can', 'CAN.G78.143' => 'can', 'CANSAT56G0646' => 'cansat', 'CANSAT56G4081' => 'cansat', 'CARHR208790' => 'chi', 'CARHR249090' => 'chi', 'Carub.0006s0341' => 'cru', 'Carub.0006s3625' => 'cru', 'Ca_10462_v3' => 'car', 'Ca_23547_v3' => 'car', 'Ca_30879_v3' => 'car', 'CBR_g8119' => 'cbr', 'Cc02_g10480' => 'ccan', 'Cc02_g38760' => 'ccan', 'CDE02G1209' => 'cde', 'CDE02G1402' => 'cde', 'CDE09G0544' => 'cde', 'Cfa001769' => 'cfa', 'Cfa003855' => 'cfa', 'Ciclev10018649m.g' => 'ccl', 'Ciclev10030581m.g' => 'ccl', 'CiPaw.01G069600' => 'cil', 'CiPaw.01G264500' => 'cil', 'CiPaw.02G037200' => 'cil', 'CiPaw.02G169700' => 'cil', 'ClCG00G004460' => 'cla', 'ClCG05G021470' => 'cla', 'ClCG06G003320' => 'cla', 'ClCG08G007970' => 'cla', 'COL.COLO4_06362' => 'col', 'COL.COLO4_07703' => 'col', 'COL.COLO4_34160' => 'col', 'Cpa.g.sc128.71' => 'cpa', 'Cpa.g.sc128.72' => 'cpa', 'Cpa.g.sc184.12' => 'cpa', 'CsaV3_2G032790' => 'csa', 'CsaV3_5G035780' => 'csa', 'CsaV3_5G036220' => 'csa', 'CsaV3_6G000960' => 'csa', 'CSS0023193' => 'camsi', 'CSS0026488' => 'camsi', 'CSS0035481' => 'camsi', 'CSS0043665' => 'camsi', 'DCAR_006957' => 'dca', 'DCAR_019055' => 'dca', 'Dinv20857' => 'din', 'Dinv32535' => 'din', 'Dinv43879' => 'din', 'Duzib114G0892' => 'dzi', 'Duzib128G0497' => 'dzi', 'Duzib133G0786' => 'dzi', 'Duzib138G0834' => 'dzi', 'Duzib235G0159' => 'dzi', 'ECA233G0301' => 'eca', 'ECA234G3284' => 'eca', 'ECA240G2267' => 'eca', 'EL10Ac1g00336' => 'bvu', 'EL10Ac8g19652' => 'bvu', 'Eucgr.E00083' => 'egr', 'Eucgr.G02730' => 'egr', 'FAN01G0097' => 'fan', 'FAN01G0828' => 'fan', 'FAN03G1732' => 'fan', 'FAN03G2995' => 'fan', 'FAN06G3150' => 'fan', 'FAN06G3444' => 'fan', 'FAN06G3533' => 'fan', 'FAN10G0843' => 'fan', 'FAN10G4099' => 'fan', 'FvH4_7g06830' => 'fve', 'FvH4_7g15660' => 'fve', 'Glyma.07G062100' => 'gma', 'Glyma.10G200000' => 'gma', 'Glyma.16G030100' => 'gma', 'Glyma.20G190500' => 'gma', 'Gohir.A05G290600' => 'ghi', 'Gohir.A08G127200' => 'ghi', 'Gohir.A11G093200' => 'ghi', 'Gohir.D05G291800' => 'ghi', 'Gohir.D08G148600' => 'ghi', 'Gohir.D11G098100' => 'ghi', 'Gorai.004G154300' => 'gra', 'Gorai.007G104300' => 'gra', 'Gorai.009G307600' => 'gra', 'GSVIVG01005024001' => 'vvi', 'GSVIVG01027020001' => 'vvi', 'HanXRQChr02g0051931' => 'han', 'HanXRQChr06g0166941' => 'han', 'HanXRQChr08g0218341' => 'han', 'HanXRQChr16g0523821' => 'han', 'HanXRQChr17g0562251' => 'han', 'Haze_15594' => 'cav', 'Haze_16787' => 'cav', 'Hma1.2p1_0361F.1_g135940' => 'hma', 'Hma1.2p1_0783F.1_g217010' => 'hma', 'HPP92_011535' => 'vpl', 'HPP92_022570' => 'vpl', 'Hund16682' => 'sun', 'Hund17861' => 'sun', 'Hund27234' => 'sun', 'Lalb_Chr02g0151191' => 'lal', 'Lalb_Chr06g0170061' => 'lal', 'Lalb_Chr10g0096531' => 'lal', 'Lalb_Chr17g0338911' => 'lal', 'Lalb_Chr24g0401121' => 'lal', 'Lj2C25G10' => 'lonja', 'Lj3C337T0' => 'lonja', 'Lj3C337T1' => 'lonja', 'Lj3g0010045' => 'lja', 'Lj5g0026880' => 'lja', 'Lj7C505G15' => 'lonja', 'Lj9C594T10' => 'lonja', 'LjContig00435g0005269' => 'lja', 'Lsat_1_v5_gn_3_138461' => 'lsa', 'Lsat_1_v5_gn_4_34080' => 'lsa', 'Lsat_1_v5_gn_5_8501' => 'lsa', 'Lsat_1_v5_gn_6_25500' => 'lsa', 'Lsat_1_v5_gn_7_27840' => 'lsa', 'Lsat_1_v5_gn_8_22761' => 'lsa', 'Manes.01G251000' => 'mes', 'Manes.05G027800' => 'mes', 'Manes.07G093200' => 'mes', 'Mapoly0032s0054' => 'mpo', 'Mapoly0058s0074' => 'mpo', 'Mapoly0073s0095' => 'mpo', 'Mapoly0134s0051' => 'mpo', 'MBI02_g25599_MAGBIO' => 'mbi', 'MBI07_g06317_MAGBIO' => 'mbi', 'MBI07_g45739_MAGBIO' => 'mbi', 'MBI07_g45740_MAGBIO' => 'mbi', 'MBI15_g00068_MAGBIO' => 'mbi', 'MBI15_g22169_MAGBIO' => 'mbi', 'MD01G1073400' => 'mdo', 'MD02G1241600' => 'mdo', 'MD07G1075100' => 'mdo', 'MD07G1075200' => 'mdo', 'Medtr1g090860' => 'mtr', 'Medtr7g012910' => 'mtr', 'Medtr8g028395' => 'mtr', 'MELO3C012379.2' => 'cme', 'MELO3C012422.2' => 'cme', 'MELO3C019854.2' => 'cme', 'MELO3C021173.2' => 'cme', 'Migut.B01815' => 'egut', 'Migut.F01670' => 'egut', 'Migut.N01578' => 'egut', 'MSTRG.20874' => 'ama', 'MSTRG.4828' => 'ama', 'MSTRG.8116' => 'ama', 'Nitab4.5_0000305g0380' => 'nta', 'Nitab4.5_0000593g0320' => 'nta', 'Nitab4.5_0004748g0030' => 'nta', 'Nitab4.5_0006383g0020' => 'nta', 'Nn1g01751' => 'nnu', 'Nn2g13906' => 'nnu', 'Nn6g35162' => 'nnu', 'Nn6g35163' => 'nnu', 'Nn6g35164' => 'nnu', 'Nn6g35168' => 'nnu', 'Nn7g37330' => 'nnu', 'Nn7g37331' => 'nnu', 'Nn8g38871' => 'nnu', 'Oeu004919.1' => 'oeu', 'Oeu022857.1' => 'oeu', 'Oeu060291.1' => 'oeu', 'Os01g0622000' => 'osa', 'Os01g0622066' => 'osa', 'Os10g0546200' => 'osa', 'Peaxi162Scf00321g00216' => 'pax', 'Peaxi162Scf01254g00029' => 'pax', 'PGR042G1970' => 'pgr', 'PGR142G3455' => 'pgr', 'PGSC0003DMG400000078' => 'stu', 'PGSC0003DMG400000261' => 'stu', 'PGSC0003DMG400027328' => 'stu', 'Phvul.007G141200' => 'pvu', 'Phvul.010G105900' => 'pvu', 'Potri.002G166100' => 'ptr', 'Potri.008G029400' => 'ptr', 'Potri.010G232000' => 'ptr', 'Potri.014G092500' => 'ptr', 'Pp3c18_17630' => 'ppa', 'Pp3c21_5280' => 'ppa', 'Prupe.2G095400' => 'ppe', 'Prupe.2G179800' => 'ppe', 'Psat4g157160' => 'psa', 'Psat6g174080' => 'psa', 'PSO063G1346' => 'pso', 'PSO063G6918' => 'pso', 'PSO170G3647' => 'pso', 'PSO339G4809' => 'pso', 'QL03p035321' => 'qlo', 'QL04p058948' => 'qlo', 'QL08p052911' => 'qlo', 'RcHm_v2.0_Chr1g0336581' => 'rch', 'RcHm_v2.0_Chr1g0358361' => 'rch', 'RcHm_v2.0_Chr1g0358371' => 'rch', 'Rhsim01G0168400' => 'rsi', 'Rhsim07G0008900' => 'rsi', 'Rhsim09G0144800' => 'rsi', 'Rhsim11G0144700' => 'rsi', 'RhsimUnG0170000' => 'rsi', 'Sabra02G0145500' => 'sbr', 'Sabra10G0179800' => 'sbr', 'Sabra14G0067100' => 'sbr', 'SalBow3G1047' => 'sbo', 'SalBow5G5061' => 'sbo', 'SalBow6G5918' => 'sbo', 'Sc01g0003110' => 'sci', 'Sc20g0001430' => 'sci', 'Sc23g0002440' => 'sci', 'Sed0009109' => 'sed', 'Sed0011280' => 'sed', 'Sed0012656' => 'sed', 'Sed0024460' => 'sed', 'SEGI_04246' => 'sgi', 'SEGI_12246' => 'sgi', 'SEGI_24653' => 'sgi', 'SEGI_29760' => 'sgi', 'SEGI_35759' => 'sgi', 'SEGI_36466' => 'sgi', 'SGA_v2.0_scaffold112G31629' => 'sas', 'SGA_v2.0_scaffold11G05700' => 'sas', 'SGA_v2.0_scaffold43G16387' => 'sas', 'SGA_v2.0_scaffold62G21511' => 'sas', 'SHI21331' => 'shi', 'SHI21332' => 'shi', 'SHI21333' => 'shi', 'SHI21337' => 'shi', 'SMO200G0158' => 'smo', 'SMO200G0232' => 'smo', 'SMO278G0014' => 'smo', 'SMO278G0028' => 'smo', 'Solyc01g095300.3' => 'sly', 'Solyc11g007840.3' => 'sly', 'Sopen01g039090' => 'spe', 'Sopen11g003700' => 'spe', 'Sp6g00910' => 'spa', 'Sp6g38270' => 'spa', 'TAR374G0937' => 'tar', 'TAR375G0481' => 'tar', 'TAR623G0581' => 'tar', 'THA.LOC104801379' => 'tha', 'THA.LOC104816682' => 'tha', 'THA.LOC104825864' => 'tha', 'Thecc.01G350000' => 'tca', 'Thecc.10G091100' => 'tca', 'Thhalv10012611m.g' => 'esa', 'Thhalv10028385m.g' => 'esa', 'TPR.G18147' => 'tpr', 'TPR.G37850' => 'tpr', 'TPR.G39986' => 'tpr', 'TWI14G0955' => 'twi', 'TWI23G0084' => 'twi', 'TWI38G1322' => 'twi', 'TWI63G1114' => 'twi', 'unitig_62.g23805' => 'ugi', 'unitig_62.g23806' => 'ugi', 'unitig_736.g22317' => 'ugi', 'vmacro10265' => 'vma', 'vmacro13213' => 'vma', 'vmacro13214' => 'vma', 'vmacro15010' => 'vma', 'vmacro20876' => 'vma', 'VMungo0331G0360' => 'vmu', 'VMungo0720G1029' => 'vmu', 'Zm00001eb159550' => 'zma', 'Zm00001eb358450' => 'zma', 'Zm00001eb358480' => 'zma', 'Zm00001eb358490' => 'zma', 'Zm00001eb392000' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001977', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001977' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001977', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '334', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001977' ) ), 'genes' => array( 'A03p31930' => 'bna', 'A09p00140' => 'bna', 'A10p31610' => 'bna', 'Aa31LG11G5350' => 'aar', 'Aa31LG5G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.909' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1731' => 'aag', 'Actinidia10087' => 'ach', 'Actinidia20139' => 'ach', 'Actinidia34785' => 'ach', 'Actinidia38895' => 'ach', 'Actinidia38896' => 'ach', 'Ah.05g180040' => 'amhyb', 'Ah.05g180050' => 'amhyb', 'Ah.09g232520' => 'amhyb', 'Ah.09g232530' => 'amhyb', 'AL6G14110' => 'aly', 'AL6G52170' => 'aly', 'Aqoxy1G01034' => 'aox', 'Aqoxy1G01052' => 'aox', 'Aqoxy1G01053' => 'aox', 'Aqoxy5G04047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74524Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ31U7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G6UQCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW0VG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5BQMH' => 'arhy', 'AT4G01210' => 'ath', 'AT5G04480' => 'ath', 'ATR0105G029' => 'atr', 'ATR0109G019' => 'atr', 'ATR0661G098' => 'atr', 'ATR0661G166' => 'atr', 'ATR0661G249' => 'atr', 'ATR0661G502' => 'atr', 'Atru.chr12.922' => 'acertr', 'Atru.chr5.605' => 'acertr', 'AUR62002711' => 'cqu', 'AUR62004428' => 'cqu', 'AUR62022635' => 'cqu', 'AUR62030172' => 'cqu', 'BcaB01g02326' => 'bca', 'BcaB05g21759' => 'bca', 'BcaC01g06850' => 'bca', 'BcaC03g12947' => 'bca', 'BcaC04g24132' => 'bca', 'BcaC06g32157' => 'bca', 'BolC2t06152H' => 'bol', 'BolC2t09840H' => 'bol', 'BolC3t16167H' => 'bol', 'BolC9t53010H' => 'bol', 'BolC9t59972H' => 'bol', 'BraA02t07415Z' => 'bra', 'BraA03t12365Z' => 'bra', 'BraA09t35742Z' => 'bra', 'BraA10t45207Z' => 'bra', 'C02p01950' => 'bna', 'C02p38250' => 'bna', 'C03p38950' => 'bna', 'C09p00760' => 'bna', 'C09p72280' => 'bna', 'CAN.G135.31' => 'can', 'CAN.G48.14' => 'can', 'CAN.G529.46' => 'can', 'CAN.G78.143' => 'can', 'CANSAT56G0646' => 'cansat', 'CANSAT56G4081' => 'cansat', 'CARHR208790' => 'chi', 'CARHR249090' => 'chi', 'Carub.0006s0341' => 'cru', 'Carub.0006s3625' => 'cru', 'Ca_10462_v3' => 'car', 'Ca_23547_v3' => 'car', 'Ca_30879_v3' => 'car', 'CBR_g8119' => 'cbr', 'Cc02_g10480' => 'ccan', 'Cc02_g38760' => 'ccan', 'CDE02G1209' => 'cde', 'CDE02G1402' => 'cde', 'CDE09G0544' => 'cde', 'Cfa001769' => 'cfa', 'Cfa003855' => 'cfa', 'Ciclev10018649m.g' => 'ccl', 'Ciclev10030581m.g' => 'ccl', 'CiPaw.01G069600' => 'cil', 'CiPaw.01G264500' => 'cil', 'CiPaw.02G037200' => 'cil', 'CiPaw.02G169700' => 'cil', 'ClCG00G004460' => 'cla', 'ClCG05G021470' => 'cla', 'ClCG06G003320' => 'cla', 'ClCG08G007970' => 'cla', 'COL.COLO4_06362' => 'col', 'COL.COLO4_07703' => 'col', 'COL.COLO4_34160' => 'col', 'Cpa.g.sc128.71' => 'cpa', 'Cpa.g.sc128.72' => 'cpa', 'Cpa.g.sc184.12' => 'cpa', 'CsaV3_2G032790' => 'csa', 'CsaV3_5G035780' => 'csa', 'CsaV3_5G036220' => 'csa', 'CsaV3_6G000960' => 'csa', 'CSS0023193' => 'camsi', 'CSS0026488' => 'camsi', 'CSS0035481' => 'camsi', 'CSS0043665' => 'camsi', 'DCAR_006957' => 'dca', 'DCAR_019055' => 'dca', 'Dinv20857' => 'din', 'Dinv32535' => 'din', 'Dinv43879' => 'din', 'Duzib114G0892' => 'dzi', 'Duzib128G0497' => 'dzi', 'Duzib133G0786' => 'dzi', 'Duzib138G0834' => 'dzi', 'Duzib235G0159' => 'dzi', 'ECA233G0301' => 'eca', 'ECA234G3284' => 'eca', 'ECA240G2267' => 'eca', 'EL10Ac1g00336' => 'bvu', 'EL10Ac8g19652' => 'bvu', 'Eucgr.E00083' => 'egr', 'Eucgr.G02730' => 'egr', 'FAN01G0097' => 'fan', 'FAN01G0828' => 'fan', 'FAN03G1732' => 'fan', 'FAN03G2995' => 'fan', 'FAN06G3150' => 'fan', 'FAN06G3444' => 'fan', 'FAN06G3533' => 'fan', 'FAN10G0843' => 'fan', 'FAN10G4099' => 'fan', 'FvH4_7g06830' => 'fve', 'FvH4_7g15660' => 'fve', 'Glyma.07G062100' => 'gma', 'Glyma.10G200000' => 'gma', 'Glyma.16G030100' => 'gma', 'Glyma.20G190500' => 'gma', 'Gohir.A05G290600' => 'ghi', 'Gohir.A08G127200' => 'ghi', 'Gohir.A11G093200' => 'ghi', 'Gohir.D05G291800' => 'ghi', 'Gohir.D08G148600' => 'ghi', 'Gohir.D11G098100' => 'ghi', 'Gorai.004G154300' => 'gra', 'Gorai.007G104300' => 'gra', 'Gorai.009G307600' => 'gra', 'GSVIVG01005024001' => 'vvi', 'GSVIVG01027020001' => 'vvi', 'HanXRQChr02g0051931' => 'han', 'HanXRQChr06g0166941' => 'han', 'HanXRQChr08g0218341' => 'han', 'HanXRQChr16g0523821' => 'han', 'HanXRQChr17g0562251' => 'han', 'Haze_15594' => 'cav', 'Haze_16787' => 'cav', 'Hma1.2p1_0361F.1_g135940' => 'hma', 'Hma1.2p1_0783F.1_g217010' => 'hma', 'HPP92_011535' => 'vpl', 'HPP92_022570' => 'vpl', 'Hund16682' => 'sun', 'Hund17861' => 'sun', 'Hund27234' => 'sun', 'Lalb_Chr02g0151191' => 'lal', 'Lalb_Chr06g0170061' => 'lal', 'Lalb_Chr10g0096531' => 'lal', 'Lalb_Chr17g0338911' => 'lal', 'Lalb_Chr24g0401121' => 'lal', 'Lj2C25G10' => 'lonja', 'Lj3C337T0' => 'lonja', 'Lj3C337T1' => 'lonja', 'Lj3g0010045' => 'lja', 'Lj5g0026880' => 'lja', 'Lj7C505G15' => 'lonja', 'Lj9C594T10' => 'lonja', 'LjContig00435g0005269' => 'lja', 'Lsat_1_v5_gn_3_138461' => 'lsa', 'Lsat_1_v5_gn_4_34080' => 'lsa', 'Lsat_1_v5_gn_5_8501' => 'lsa', 'Lsat_1_v5_gn_6_25500' => 'lsa', 'Lsat_1_v5_gn_7_27840' => 'lsa', 'Lsat_1_v5_gn_8_22761' => 'lsa', 'Manes.01G251000' => 'mes', 'Manes.05G027800' => 'mes', 'Manes.07G093200' => 'mes', 'Mapoly0032s0054' => 'mpo', 'Mapoly0058s0074' => 'mpo', 'Mapoly0073s0095' => 'mpo', 'Mapoly0134s0051' => 'mpo', 'MBI02_g25599_MAGBIO' => 'mbi', 'MBI07_g06317_MAGBIO' => 'mbi', 'MBI07_g45739_MAGBIO' => 'mbi', 'MBI07_g45740_MAGBIO' => 'mbi', 'MBI15_g00068_MAGBIO' => 'mbi', 'MBI15_g22169_MAGBIO' => 'mbi', 'MD01G1073400' => 'mdo', 'MD02G1241600' => 'mdo', 'MD07G1075100' => 'mdo', 'MD07G1075200' => 'mdo', 'Medtr1g090860' => 'mtr', 'Medtr7g012910' => 'mtr', 'Medtr8g028395' => 'mtr', 'MELO3C012379.2' => 'cme', 'MELO3C012422.2' => 'cme', 'MELO3C019854.2' => 'cme', 'MELO3C021173.2' => 'cme', 'Migut.B01815' => 'egut', 'Migut.F01670' => 'egut', 'Migut.N01578' => 'egut', 'MSTRG.20874' => 'ama', 'MSTRG.4828' => 'ama', 'MSTRG.8116' => 'ama', 'Nitab4.5_0000305g0380' => 'nta', 'Nitab4.5_0000593g0320' => 'nta', 'Nitab4.5_0004748g0030' => 'nta', 'Nitab4.5_0006383g0020' => 'nta', 'Nn1g01751' => 'nnu', 'Nn2g13906' => 'nnu', 'Nn6g35162' => 'nnu', 'Nn6g35163' => 'nnu', 'Nn6g35164' => 'nnu', 'Nn6g35168' => 'nnu', 'Nn7g37330' => 'nnu', 'Nn7g37331' => 'nnu', 'Nn8g38871' => 'nnu', 'Oeu004919.1' => 'oeu', 'Oeu022857.1' => 'oeu', 'Oeu060291.1' => 'oeu', 'Os01g0622000' => 'osa', 'Os01g0622066' => 'osa', 'Os10g0546200' => 'osa', 'Peaxi162Scf00321g00216' => 'pax', 'Peaxi162Scf01254g00029' => 'pax', 'PGR042G1970' => 'pgr', 'PGR142G3455' => 'pgr', 'PGSC0003DMG400000078' => 'stu', 'PGSC0003DMG400000261' => 'stu', 'PGSC0003DMG400027328' => 'stu', 'Phvul.007G141200' => 'pvu', 'Phvul.010G105900' => 'pvu', 'Potri.002G166100' => 'ptr', 'Potri.008G029400' => 'ptr', 'Potri.010G232000' => 'ptr', 'Potri.014G092500' => 'ptr', 'Pp3c18_17630' => 'ppa', 'Pp3c21_5280' => 'ppa', 'Prupe.2G095400' => 'ppe', 'Prupe.2G179800' => 'ppe', 'Psat4g157160' => 'psa', 'Psat6g174080' => 'psa', 'PSO063G1346' => 'pso', 'PSO063G6918' => 'pso', 'PSO170G3647' => 'pso', 'PSO339G4809' => 'pso', 'QL03p035321' => 'qlo', 'QL04p058948' => 'qlo', 'QL08p052911' => 'qlo', 'RcHm_v2.0_Chr1g0336581' => 'rch', 'RcHm_v2.0_Chr1g0358361' => 'rch', 'RcHm_v2.0_Chr1g0358371' => 'rch', 'Rhsim01G0168400' => 'rsi', 'Rhsim07G0008900' => 'rsi', 'Rhsim09G0144800' => 'rsi', 'Rhsim11G0144700' => 'rsi', 'RhsimUnG0170000' => 'rsi', 'Sabra02G0145500' => 'sbr', 'Sabra10G0179800' => 'sbr', 'Sabra14G0067100' => 'sbr', 'SalBow3G1047' => 'sbo', 'SalBow5G5061' => 'sbo', 'SalBow6G5918' => 'sbo', 'Sc01g0003110' => 'sci', 'Sc20g0001430' => 'sci', 'Sc23g0002440' => 'sci', 'Sed0009109' => 'sed', 'Sed0011280' => 'sed', 'Sed0012656' => 'sed', 'Sed0024460' => 'sed', 'SEGI_04246' => 'sgi', 'SEGI_12246' => 'sgi', 'SEGI_24653' => 'sgi', 'SEGI_29760' => 'sgi', 'SEGI_35759' => 'sgi', 'SEGI_36466' => 'sgi', 'SGA_v2.0_scaffold112G31629' => 'sas', 'SGA_v2.0_scaffold11G05700' => 'sas', 'SGA_v2.0_scaffold43G16387' => 'sas', 'SGA_v2.0_scaffold62G21511' => 'sas', 'SHI21331' => 'shi', 'SHI21332' => 'shi', 'SHI21333' => 'shi', 'SHI21337' => 'shi', 'SMO200G0158' => 'smo', 'SMO200G0232' => 'smo', 'SMO278G0014' => 'smo', 'SMO278G0028' => 'smo', 'Solyc01g095300.3' => 'sly', 'Solyc11g007840.3' => 'sly', 'Sopen01g039090' => 'spe', 'Sopen11g003700' => 'spe', 'Sp6g00910' => 'spa', 'Sp6g38270' => 'spa', 'TAR374G0937' => 'tar', 'TAR375G0481' => 'tar', 'TAR623G0581' => 'tar', 'THA.LOC104801379' => 'tha', 'THA.LOC104816682' => 'tha', 'THA.LOC104825864' => 'tha', 'Thecc.01G350000' => 'tca', 'Thecc.10G091100' => 'tca', 'Thhalv10012611m.g' => 'esa', 'Thhalv10028385m.g' => 'esa', 'TPR.G18147' => 'tpr', 'TPR.G37850' => 'tpr', 'TPR.G39986' => 'tpr', 'TWI14G0955' => 'twi', 'TWI23G0084' => 'twi', 'TWI38G1322' => 'twi', 'TWI63G1114' => 'twi', 'unitig_62.g23805' => 'ugi', 'unitig_62.g23806' => 'ugi', 'unitig_736.g22317' => 'ugi', 'vmacro10265' => 'vma', 'vmacro13213' => 'vma', 'vmacro13214' => 'vma', 'vmacro15010' => 'vma', 'vmacro20876' => 'vma', 'VMungo0331G0360' => 'vmu', 'VMungo0720G1029' => 'vmu', 'Zm00001eb159550' => 'zma', 'Zm00001eb358450' => 'zma', 'Zm00001eb358480' => 'zma', 'Zm00001eb358490' => 'zma', 'Zm00001eb392000' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001977' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001977' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001977' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001977' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001977', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '334', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p31930' => 'bna', 'A09p00140' => 'bna', 'A10p31610' => 'bna', 'Aa31LG11G5350' => 'aar', 'Aa31LG5G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.909' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1731' => 'aag', 'Actinidia10087' => 'ach', 'Actinidia20139' => 'ach', 'Actinidia34785' => 'ach', 'Actinidia38895' => 'ach', 'Actinidia38896' => 'ach', 'Ah.05g180040' => 'amhyb', 'Ah.05g180050' => 'amhyb', 'Ah.09g232520' => 'amhyb', 'Ah.09g232530' => 'amhyb', 'AL6G14110' => 'aly', 'AL6G52170' => 'aly', 'Aqoxy1G01034' => 'aox', 'Aqoxy1G01052' => 'aox', 'Aqoxy1G01053' => 'aox', 'Aqoxy5G04047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74524Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ31U7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G6UQCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW0VG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5BQMH' => 'arhy', 'AT4G01210' => 'ath', 'AT5G04480' => 'ath', 'ATR0105G029' => 'atr', 'ATR0109G019' => 'atr', 'ATR0661G098' => 'atr', 'ATR0661G166' => 'atr', 'ATR0661G249' => 'atr', 'ATR0661G502' => 'atr', 'Atru.chr12.922' => 'acertr', 'Atru.chr5.605' => 'acertr', 'AUR62002711' => 'cqu', 'AUR62004428' => 'cqu', 'AUR62022635' => 'cqu', 'AUR62030172' => 'cqu', 'BcaB01g02326' => 'bca', 'BcaB05g21759' => 'bca', 'BcaC01g06850' => 'bca', 'BcaC03g12947' => 'bca', 'BcaC04g24132' => 'bca', 'BcaC06g32157' => 'bca', 'BolC2t06152H' => 'bol', 'BolC2t09840H' => 'bol', 'BolC3t16167H' => 'bol', 'BolC9t53010H' => 'bol', 'BolC9t59972H' => 'bol', 'BraA02t07415Z' => 'bra', 'BraA03t12365Z' => 'bra', 'BraA09t35742Z' => 'bra', 'BraA10t45207Z' => 'bra', 'C02p01950' => 'bna', 'C02p38250' => 'bna', 'C03p38950' => 'bna', 'C09p00760' => 'bna', 'C09p72280' => 'bna', 'CAN.G135.31' => 'can', 'CAN.G48.14' => 'can', 'CAN.G529.46' => 'can', 'CAN.G78.143' => 'can', 'CANSAT56G0646' => 'cansat', 'CANSAT56G4081' => 'cansat', 'CARHR208790' => 'chi', 'CARHR249090' => 'chi', 'Carub.0006s0341' => 'cru', 'Carub.0006s3625' => 'cru', 'Ca_10462_v3' => 'car', 'Ca_23547_v3' => 'car', 'Ca_30879_v3' => 'car', 'CBR_g8119' => 'cbr', 'Cc02_g10480' => 'ccan', 'Cc02_g38760' => 'ccan', 'CDE02G1209' => 'cde', 'CDE02G1402' => 'cde', 'CDE09G0544' => 'cde', 'Cfa001769' => 'cfa', 'Cfa003855' => 'cfa', 'Ciclev10018649m.g' => 'ccl', 'Ciclev10030581m.g' => 'ccl', 'CiPaw.01G069600' => 'cil', 'CiPaw.01G264500' => 'cil', 'CiPaw.02G037200' => 'cil', 'CiPaw.02G169700' => 'cil', 'ClCG00G004460' => 'cla', 'ClCG05G021470' => 'cla', 'ClCG06G003320' => 'cla', 'ClCG08G007970' => 'cla', 'COL.COLO4_06362' => 'col', 'COL.COLO4_07703' => 'col', 'COL.COLO4_34160' => 'col', 'Cpa.g.sc128.71' => 'cpa', 'Cpa.g.sc128.72' => 'cpa', 'Cpa.g.sc184.12' => 'cpa', 'CsaV3_2G032790' => 'csa', 'CsaV3_5G035780' => 'csa', 'CsaV3_5G036220' => 'csa', 'CsaV3_6G000960' => 'csa', 'CSS0023193' => 'camsi', 'CSS0026488' => 'camsi', 'CSS0035481' => 'camsi', 'CSS0043665' => 'camsi', 'DCAR_006957' => 'dca', 'DCAR_019055' => 'dca', 'Dinv20857' => 'din', 'Dinv32535' => 'din', 'Dinv43879' => 'din', 'Duzib114G0892' => 'dzi', 'Duzib128G0497' => 'dzi', 'Duzib133G0786' => 'dzi', 'Duzib138G0834' => 'dzi', 'Duzib235G0159' => 'dzi', 'ECA233G0301' => 'eca', 'ECA234G3284' => 'eca', 'ECA240G2267' => 'eca', 'EL10Ac1g00336' => 'bvu', 'EL10Ac8g19652' => 'bvu', 'Eucgr.E00083' => 'egr', 'Eucgr.G02730' => 'egr', 'FAN01G0097' => 'fan', 'FAN01G0828' => 'fan', 'FAN03G1732' => 'fan', 'FAN03G2995' => 'fan', 'FAN06G3150' => 'fan', 'FAN06G3444' => 'fan', 'FAN06G3533' => 'fan', 'FAN10G0843' => 'fan', 'FAN10G4099' => 'fan', 'FvH4_7g06830' => 'fve', 'FvH4_7g15660' => 'fve', 'Glyma.07G062100' => 'gma', 'Glyma.10G200000' => 'gma', 'Glyma.16G030100' => 'gma', 'Glyma.20G190500' => 'gma', 'Gohir.A05G290600' => 'ghi', 'Gohir.A08G127200' => 'ghi', 'Gohir.A11G093200' => 'ghi', 'Gohir.D05G291800' => 'ghi', 'Gohir.D08G148600' => 'ghi', 'Gohir.D11G098100' => 'ghi', 'Gorai.004G154300' => 'gra', 'Gorai.007G104300' => 'gra', 'Gorai.009G307600' => 'gra', 'GSVIVG01005024001' => 'vvi', 'GSVIVG01027020001' => 'vvi', 'HanXRQChr02g0051931' => 'han', 'HanXRQChr06g0166941' => 'han', 'HanXRQChr08g0218341' => 'han', 'HanXRQChr16g0523821' => 'han', 'HanXRQChr17g0562251' => 'han', 'Haze_15594' => 'cav', 'Haze_16787' => 'cav', 'Hma1.2p1_0361F.1_g135940' => 'hma', 'Hma1.2p1_0783F.1_g217010' => 'hma', 'HPP92_011535' => 'vpl', 'HPP92_022570' => 'vpl', 'Hund16682' => 'sun', 'Hund17861' => 'sun', 'Hund27234' => 'sun', 'Lalb_Chr02g0151191' => 'lal', 'Lalb_Chr06g0170061' => 'lal', 'Lalb_Chr10g0096531' => 'lal', 'Lalb_Chr17g0338911' => 'lal', 'Lalb_Chr24g0401121' => 'lal', 'Lj2C25G10' => 'lonja', 'Lj3C337T0' => 'lonja', 'Lj3C337T1' => 'lonja', 'Lj3g0010045' => 'lja', 'Lj5g0026880' => 'lja', 'Lj7C505G15' => 'lonja', 'Lj9C594T10' => 'lonja', 'LjContig00435g0005269' => 'lja', 'Lsat_1_v5_gn_3_138461' => 'lsa', 'Lsat_1_v5_gn_4_34080' => 'lsa', 'Lsat_1_v5_gn_5_8501' => 'lsa', 'Lsat_1_v5_gn_6_25500' => 'lsa', 'Lsat_1_v5_gn_7_27840' => 'lsa', 'Lsat_1_v5_gn_8_22761' => 'lsa', 'Manes.01G251000' => 'mes', 'Manes.05G027800' => 'mes', 'Manes.07G093200' => 'mes', 'Mapoly0032s0054' => 'mpo', 'Mapoly0058s0074' => 'mpo', 'Mapoly0073s0095' => 'mpo', 'Mapoly0134s0051' => 'mpo', 'MBI02_g25599_MAGBIO' => 'mbi', 'MBI07_g06317_MAGBIO' => 'mbi', 'MBI07_g45739_MAGBIO' => 'mbi', 'MBI07_g45740_MAGBIO' => 'mbi', 'MBI15_g00068_MAGBIO' => 'mbi', 'MBI15_g22169_MAGBIO' => 'mbi', 'MD01G1073400' => 'mdo', 'MD02G1241600' => 'mdo', 'MD07G1075100' => 'mdo', 'MD07G1075200' => 'mdo', 'Medtr1g090860' => 'mtr', 'Medtr7g012910' => 'mtr', 'Medtr8g028395' => 'mtr', 'MELO3C012379.2' => 'cme', 'MELO3C012422.2' => 'cme', 'MELO3C019854.2' => 'cme', 'MELO3C021173.2' => 'cme', 'Migut.B01815' => 'egut', 'Migut.F01670' => 'egut', 'Migut.N01578' => 'egut', 'MSTRG.20874' => 'ama', 'MSTRG.4828' => 'ama', 'MSTRG.8116' => 'ama', 'Nitab4.5_0000305g0380' => 'nta', 'Nitab4.5_0000593g0320' => 'nta', 'Nitab4.5_0004748g0030' => 'nta', 'Nitab4.5_0006383g0020' => 'nta', 'Nn1g01751' => 'nnu', 'Nn2g13906' => 'nnu', 'Nn6g35162' => 'nnu', 'Nn6g35163' => 'nnu', 'Nn6g35164' => 'nnu', 'Nn6g35168' => 'nnu', 'Nn7g37330' => 'nnu', 'Nn7g37331' => 'nnu', 'Nn8g38871' => 'nnu', 'Oeu004919.1' => 'oeu', 'Oeu022857.1' => 'oeu', 'Oeu060291.1' => 'oeu', 'Os01g0622000' => 'osa', 'Os01g0622066' => 'osa', 'Os10g0546200' => 'osa', 'Peaxi162Scf00321g00216' => 'pax', 'Peaxi162Scf01254g00029' => 'pax', 'PGR042G1970' => 'pgr', 'PGR142G3455' => 'pgr', 'PGSC0003DMG400000078' => 'stu', 'PGSC0003DMG400000261' => 'stu', 'PGSC0003DMG400027328' => 'stu', 'Phvul.007G141200' => 'pvu', 'Phvul.010G105900' => 'pvu', 'Potri.002G166100' => 'ptr', 'Potri.008G029400' => 'ptr', 'Potri.010G232000' => 'ptr', 'Potri.014G092500' => 'ptr', 'Pp3c18_17630' => 'ppa', 'Pp3c21_5280' => 'ppa', 'Prupe.2G095400' => 'ppe', 'Prupe.2G179800' => 'ppe', 'Psat4g157160' => 'psa', 'Psat6g174080' => 'psa', 'PSO063G1346' => 'pso', 'PSO063G6918' => 'pso', 'PSO170G3647' => 'pso', 'PSO339G4809' => 'pso', 'QL03p035321' => 'qlo', 'QL04p058948' => 'qlo', 'QL08p052911' => 'qlo', 'RcHm_v2.0_Chr1g0336581' => 'rch', 'RcHm_v2.0_Chr1g0358361' => 'rch', 'RcHm_v2.0_Chr1g0358371' => 'rch', 'Rhsim01G0168400' => 'rsi', 'Rhsim07G0008900' => 'rsi', 'Rhsim09G0144800' => 'rsi', 'Rhsim11G0144700' => 'rsi', 'RhsimUnG0170000' => 'rsi', 'Sabra02G0145500' => 'sbr', 'Sabra10G0179800' => 'sbr', 'Sabra14G0067100' => 'sbr', 'SalBow3G1047' => 'sbo', 'SalBow5G5061' => 'sbo', 'SalBow6G5918' => 'sbo', 'Sc01g0003110' => 'sci', 'Sc20g0001430' => 'sci', 'Sc23g0002440' => 'sci', 'Sed0009109' => 'sed', 'Sed0011280' => 'sed', 'Sed0012656' => 'sed', 'Sed0024460' => 'sed', 'SEGI_04246' => 'sgi', 'SEGI_12246' => 'sgi', 'SEGI_24653' => 'sgi', 'SEGI_29760' => 'sgi', 'SEGI_35759' => 'sgi', 'SEGI_36466' => 'sgi', 'SGA_v2.0_scaffold112G31629' => 'sas', 'SGA_v2.0_scaffold11G05700' => 'sas', 'SGA_v2.0_scaffold43G16387' => 'sas', 'SGA_v2.0_scaffold62G21511' => 'sas', 'SHI21331' => 'shi', 'SHI21332' => 'shi', 'SHI21333' => 'shi', 'SHI21337' => 'shi', 'SMO200G0158' => 'smo', 'SMO200G0232' => 'smo', 'SMO278G0014' => 'smo', 'SMO278G0028' => 'smo', 'Solyc01g095300.3' => 'sly', 'Solyc11g007840.3' => 'sly', 'Sopen01g039090' => 'spe', 'Sopen11g003700' => 'spe', 'Sp6g00910' => 'spa', 'Sp6g38270' => 'spa', 'TAR374G0937' => 'tar', 'TAR375G0481' => 'tar', 'TAR623G0581' => 'tar', 'THA.LOC104801379' => 'tha', 'THA.LOC104816682' => 'tha', 'THA.LOC104825864' => 'tha', 'Thecc.01G350000' => 'tca', 'Thecc.10G091100' => 'tca', 'Thhalv10012611m.g' => 'esa', 'Thhalv10028385m.g' => 'esa', 'TPR.G18147' => 'tpr', 'TPR.G37850' => 'tpr', 'TPR.G39986' => 'tpr', 'TWI14G0955' => 'twi', 'TWI23G0084' => 'twi', 'TWI38G1322' => 'twi', 'TWI63G1114' => 'twi', 'unitig_62.g23805' => 'ugi', 'unitig_62.g23806' => 'ugi', 'unitig_736.g22317' => 'ugi', 'vmacro10265' => 'vma', 'vmacro13213' => 'vma', 'vmacro13214' => 'vma', 'vmacro15010' => 'vma', 'vmacro20876' => 'vma', 'VMungo0331G0360' => 'vmu', 'VMungo0720G1029' => 'vmu', 'Zm00001eb159550' => 'zma', 'Zm00001eb358450' => 'zma', 'Zm00001eb358480' => 'zma', 'Zm00001eb358490' => 'zma', 'Zm00001eb392000' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001977', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001977' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001977', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '334', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001977' ) ), 'genes' => array( 'A03p31930' => 'bna', 'A09p00140' => 'bna', 'A10p31610' => 'bna', 'Aa31LG11G5350' => 'aar', 'Aa31LG5G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.909' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1731' => 'aag', 'Actinidia10087' => 'ach', 'Actinidia20139' => 'ach', 'Actinidia34785' => 'ach', 'Actinidia38895' => 'ach', 'Actinidia38896' => 'ach', 'Ah.05g180040' => 'amhyb', 'Ah.05g180050' => 'amhyb', 'Ah.09g232520' => 'amhyb', 'Ah.09g232530' => 'amhyb', 'AL6G14110' => 'aly', 'AL6G52170' => 'aly', 'Aqoxy1G01034' => 'aox', 'Aqoxy1G01052' => 'aox', 'Aqoxy1G01053' => 'aox', 'Aqoxy5G04047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74524Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ31U7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G6UQCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW0VG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5BQMH' => 'arhy', 'AT4G01210' => 'ath', 'AT5G04480' => 'ath', 'ATR0105G029' => 'atr', 'ATR0109G019' => 'atr', 'ATR0661G098' => 'atr', 'ATR0661G166' => 'atr', 'ATR0661G249' => 'atr', 'ATR0661G502' => 'atr', 'Atru.chr12.922' => 'acertr', 'Atru.chr5.605' => 'acertr', 'AUR62002711' => 'cqu', 'AUR62004428' => 'cqu', 'AUR62022635' => 'cqu', 'AUR62030172' => 'cqu', 'BcaB01g02326' => 'bca', 'BcaB05g21759' => 'bca', 'BcaC01g06850' => 'bca', 'BcaC03g12947' => 'bca', 'BcaC04g24132' => 'bca', 'BcaC06g32157' => 'bca', 'BolC2t06152H' => 'bol', 'BolC2t09840H' => 'bol', 'BolC3t16167H' => 'bol', 'BolC9t53010H' => 'bol', 'BolC9t59972H' => 'bol', 'BraA02t07415Z' => 'bra', 'BraA03t12365Z' => 'bra', 'BraA09t35742Z' => 'bra', 'BraA10t45207Z' => 'bra', 'C02p01950' => 'bna', 'C02p38250' => 'bna', 'C03p38950' => 'bna', 'C09p00760' => 'bna', 'C09p72280' => 'bna', 'CAN.G135.31' => 'can', 'CAN.G48.14' => 'can', 'CAN.G529.46' => 'can', 'CAN.G78.143' => 'can', 'CANSAT56G0646' => 'cansat', 'CANSAT56G4081' => 'cansat', 'CARHR208790' => 'chi', 'CARHR249090' => 'chi', 'Carub.0006s0341' => 'cru', 'Carub.0006s3625' => 'cru', 'Ca_10462_v3' => 'car', 'Ca_23547_v3' => 'car', 'Ca_30879_v3' => 'car', 'CBR_g8119' => 'cbr', 'Cc02_g10480' => 'ccan', 'Cc02_g38760' => 'ccan', 'CDE02G1209' => 'cde', 'CDE02G1402' => 'cde', 'CDE09G0544' => 'cde', 'Cfa001769' => 'cfa', 'Cfa003855' => 'cfa', 'Ciclev10018649m.g' => 'ccl', 'Ciclev10030581m.g' => 'ccl', 'CiPaw.01G069600' => 'cil', 'CiPaw.01G264500' => 'cil', 'CiPaw.02G037200' => 'cil', 'CiPaw.02G169700' => 'cil', 'ClCG00G004460' => 'cla', 'ClCG05G021470' => 'cla', 'ClCG06G003320' => 'cla', 'ClCG08G007970' => 'cla', 'COL.COLO4_06362' => 'col', 'COL.COLO4_07703' => 'col', 'COL.COLO4_34160' => 'col', 'Cpa.g.sc128.71' => 'cpa', 'Cpa.g.sc128.72' => 'cpa', 'Cpa.g.sc184.12' => 'cpa', 'CsaV3_2G032790' => 'csa', 'CsaV3_5G035780' => 'csa', 'CsaV3_5G036220' => 'csa', 'CsaV3_6G000960' => 'csa', 'CSS0023193' => 'camsi', 'CSS0026488' => 'camsi', 'CSS0035481' => 'camsi', 'CSS0043665' => 'camsi', 'DCAR_006957' => 'dca', 'DCAR_019055' => 'dca', 'Dinv20857' => 'din', 'Dinv32535' => 'din', 'Dinv43879' => 'din', 'Duzib114G0892' => 'dzi', 'Duzib128G0497' => 'dzi', 'Duzib133G0786' => 'dzi', 'Duzib138G0834' => 'dzi', 'Duzib235G0159' => 'dzi', 'ECA233G0301' => 'eca', 'ECA234G3284' => 'eca', 'ECA240G2267' => 'eca', 'EL10Ac1g00336' => 'bvu', 'EL10Ac8g19652' => 'bvu', 'Eucgr.E00083' => 'egr', 'Eucgr.G02730' => 'egr', 'FAN01G0097' => 'fan', 'FAN01G0828' => 'fan', 'FAN03G1732' => 'fan', 'FAN03G2995' => 'fan', 'FAN06G3150' => 'fan', 'FAN06G3444' => 'fan', 'FAN06G3533' => 'fan', 'FAN10G0843' => 'fan', 'FAN10G4099' => 'fan', 'FvH4_7g06830' => 'fve', 'FvH4_7g15660' => 'fve', 'Glyma.07G062100' => 'gma', 'Glyma.10G200000' => 'gma', 'Glyma.16G030100' => 'gma', 'Glyma.20G190500' => 'gma', 'Gohir.A05G290600' => 'ghi', 'Gohir.A08G127200' => 'ghi', 'Gohir.A11G093200' => 'ghi', 'Gohir.D05G291800' => 'ghi', 'Gohir.D08G148600' => 'ghi', 'Gohir.D11G098100' => 'ghi', 'Gorai.004G154300' => 'gra', 'Gorai.007G104300' => 'gra', 'Gorai.009G307600' => 'gra', 'GSVIVG01005024001' => 'vvi', 'GSVIVG01027020001' => 'vvi', 'HanXRQChr02g0051931' => 'han', 'HanXRQChr06g0166941' => 'han', 'HanXRQChr08g0218341' => 'han', 'HanXRQChr16g0523821' => 'han', 'HanXRQChr17g0562251' => 'han', 'Haze_15594' => 'cav', 'Haze_16787' => 'cav', 'Hma1.2p1_0361F.1_g135940' => 'hma', 'Hma1.2p1_0783F.1_g217010' => 'hma', 'HPP92_011535' => 'vpl', 'HPP92_022570' => 'vpl', 'Hund16682' => 'sun', 'Hund17861' => 'sun', 'Hund27234' => 'sun', 'Lalb_Chr02g0151191' => 'lal', 'Lalb_Chr06g0170061' => 'lal', 'Lalb_Chr10g0096531' => 'lal', 'Lalb_Chr17g0338911' => 'lal', 'Lalb_Chr24g0401121' => 'lal', 'Lj2C25G10' => 'lonja', 'Lj3C337T0' => 'lonja', 'Lj3C337T1' => 'lonja', 'Lj3g0010045' => 'lja', 'Lj5g0026880' => 'lja', 'Lj7C505G15' => 'lonja', 'Lj9C594T10' => 'lonja', 'LjContig00435g0005269' => 'lja', 'Lsat_1_v5_gn_3_138461' => 'lsa', 'Lsat_1_v5_gn_4_34080' => 'lsa', 'Lsat_1_v5_gn_5_8501' => 'lsa', 'Lsat_1_v5_gn_6_25500' => 'lsa', 'Lsat_1_v5_gn_7_27840' => 'lsa', 'Lsat_1_v5_gn_8_22761' => 'lsa', 'Manes.01G251000' => 'mes', 'Manes.05G027800' => 'mes', 'Manes.07G093200' => 'mes', 'Mapoly0032s0054' => 'mpo', 'Mapoly0058s0074' => 'mpo', 'Mapoly0073s0095' => 'mpo', 'Mapoly0134s0051' => 'mpo', 'MBI02_g25599_MAGBIO' => 'mbi', 'MBI07_g06317_MAGBIO' => 'mbi', 'MBI07_g45739_MAGBIO' => 'mbi', 'MBI07_g45740_MAGBIO' => 'mbi', 'MBI15_g00068_MAGBIO' => 'mbi', 'MBI15_g22169_MAGBIO' => 'mbi', 'MD01G1073400' => 'mdo', 'MD02G1241600' => 'mdo', 'MD07G1075100' => 'mdo', 'MD07G1075200' => 'mdo', 'Medtr1g090860' => 'mtr', 'Medtr7g012910' => 'mtr', 'Medtr8g028395' => 'mtr', 'MELO3C012379.2' => 'cme', 'MELO3C012422.2' => 'cme', 'MELO3C019854.2' => 'cme', 'MELO3C021173.2' => 'cme', 'Migut.B01815' => 'egut', 'Migut.F01670' => 'egut', 'Migut.N01578' => 'egut', 'MSTRG.20874' => 'ama', 'MSTRG.4828' => 'ama', 'MSTRG.8116' => 'ama', 'Nitab4.5_0000305g0380' => 'nta', 'Nitab4.5_0000593g0320' => 'nta', 'Nitab4.5_0004748g0030' => 'nta', 'Nitab4.5_0006383g0020' => 'nta', 'Nn1g01751' => 'nnu', 'Nn2g13906' => 'nnu', 'Nn6g35162' => 'nnu', 'Nn6g35163' => 'nnu', 'Nn6g35164' => 'nnu', 'Nn6g35168' => 'nnu', 'Nn7g37330' => 'nnu', 'Nn7g37331' => 'nnu', 'Nn8g38871' => 'nnu', 'Oeu004919.1' => 'oeu', 'Oeu022857.1' => 'oeu', 'Oeu060291.1' => 'oeu', 'Os01g0622000' => 'osa', 'Os01g0622066' => 'osa', 'Os10g0546200' => 'osa', 'Peaxi162Scf00321g00216' => 'pax', 'Peaxi162Scf01254g00029' => 'pax', 'PGR042G1970' => 'pgr', 'PGR142G3455' => 'pgr', 'PGSC0003DMG400000078' => 'stu', 'PGSC0003DMG400000261' => 'stu', 'PGSC0003DMG400027328' => 'stu', 'Phvul.007G141200' => 'pvu', 'Phvul.010G105900' => 'pvu', 'Potri.002G166100' => 'ptr', 'Potri.008G029400' => 'ptr', 'Potri.010G232000' => 'ptr', 'Potri.014G092500' => 'ptr', 'Pp3c18_17630' => 'ppa', 'Pp3c21_5280' => 'ppa', 'Prupe.2G095400' => 'ppe', 'Prupe.2G179800' => 'ppe', 'Psat4g157160' => 'psa', 'Psat6g174080' => 'psa', 'PSO063G1346' => 'pso', 'PSO063G6918' => 'pso', 'PSO170G3647' => 'pso', 'PSO339G4809' => 'pso', 'QL03p035321' => 'qlo', 'QL04p058948' => 'qlo', 'QL08p052911' => 'qlo', 'RcHm_v2.0_Chr1g0336581' => 'rch', 'RcHm_v2.0_Chr1g0358361' => 'rch', 'RcHm_v2.0_Chr1g0358371' => 'rch', 'Rhsim01G0168400' => 'rsi', 'Rhsim07G0008900' => 'rsi', 'Rhsim09G0144800' => 'rsi', 'Rhsim11G0144700' => 'rsi', 'RhsimUnG0170000' => 'rsi', 'Sabra02G0145500' => 'sbr', 'Sabra10G0179800' => 'sbr', 'Sabra14G0067100' => 'sbr', 'SalBow3G1047' => 'sbo', 'SalBow5G5061' => 'sbo', 'SalBow6G5918' => 'sbo', 'Sc01g0003110' => 'sci', 'Sc20g0001430' => 'sci', 'Sc23g0002440' => 'sci', 'Sed0009109' => 'sed', 'Sed0011280' => 'sed', 'Sed0012656' => 'sed', 'Sed0024460' => 'sed', 'SEGI_04246' => 'sgi', 'SEGI_12246' => 'sgi', 'SEGI_24653' => 'sgi', 'SEGI_29760' => 'sgi', 'SEGI_35759' => 'sgi', 'SEGI_36466' => 'sgi', 'SGA_v2.0_scaffold112G31629' => 'sas', 'SGA_v2.0_scaffold11G05700' => 'sas', 'SGA_v2.0_scaffold43G16387' => 'sas', 'SGA_v2.0_scaffold62G21511' => 'sas', 'SHI21331' => 'shi', 'SHI21332' => 'shi', 'SHI21333' => 'shi', 'SHI21337' => 'shi', 'SMO200G0158' => 'smo', 'SMO200G0232' => 'smo', 'SMO278G0014' => 'smo', 'SMO278G0028' => 'smo', 'Solyc01g095300.3' => 'sly', 'Solyc11g007840.3' => 'sly', 'Sopen01g039090' => 'spe', 'Sopen11g003700' => 'spe', 'Sp6g00910' => 'spa', 'Sp6g38270' => 'spa', 'TAR374G0937' => 'tar', 'TAR375G0481' => 'tar', 'TAR623G0581' => 'tar', 'THA.LOC104801379' => 'tha', 'THA.LOC104816682' => 'tha', 'THA.LOC104825864' => 'tha', 'Thecc.01G350000' => 'tca', 'Thecc.10G091100' => 'tca', 'Thhalv10012611m.g' => 'esa', 'Thhalv10028385m.g' => 'esa', 'TPR.G18147' => 'tpr', 'TPR.G37850' => 'tpr', 'TPR.G39986' => 'tpr', 'TWI14G0955' => 'twi', 'TWI23G0084' => 'twi', 'TWI38G1322' => 'twi', 'TWI63G1114' => 'twi', 'unitig_62.g23805' => 'ugi', 'unitig_62.g23806' => 'ugi', 'unitig_736.g22317' => 'ugi', 'vmacro10265' => 'vma', 'vmacro13213' => 'vma', 'vmacro13214' => 'vma', 'vmacro15010' => 'vma', 'vmacro20876' => 'vma', 'VMungo0331G0360' => 'vmu', 'VMungo0720G1029' => 'vmu', 'Zm00001eb159550' => 'zma', 'Zm00001eb358450' => 'zma', 'Zm00001eb358480' => 'zma', 'Zm00001eb358490' => 'zma', 'Zm00001eb392000' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001977' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001977' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001977' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001977' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001977', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '334', 'num_species' => '97' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A03p31930' => 'bna', 'A09p00140' => 'bna', 'A10p31610' => 'bna', 'Aa31LG11G5350' => 'aar', 'Aa31LG5G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.909' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1731' => 'aag', 'Actinidia10087' => 'ach', 'Actinidia20139' => 'ach', 'Actinidia34785' => 'ach', 'Actinidia38895' => 'ach', 'Actinidia38896' => 'ach', 'Ah.05g180040' => 'amhyb', 'Ah.05g180050' => 'amhyb', 'Ah.09g232520' => 'amhyb', 'Ah.09g232530' => 'amhyb', 'AL6G14110' => 'aly', 'AL6G52170' => 'aly', 'Aqoxy1G01034' => 'aox', 'Aqoxy1G01052' => 'aox', 'Aqoxy1G01053' => 'aox', 'Aqoxy5G04047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74524Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ31U7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G6UQCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW0VG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5BQMH' => 'arhy', 'AT4G01210' => 'ath', 'AT5G04480' => 'ath', 'ATR0105G029' => 'atr', 'ATR0109G019' => 'atr', 'ATR0661G098' => 'atr', 'ATR0661G166' => 'atr', 'ATR0661G249' => 'atr', 'ATR0661G502' => 'atr', 'Atru.chr12.922' => 'acertr', 'Atru.chr5.605' => 'acertr', 'AUR62002711' => 'cqu', 'AUR62004428' => 'cqu', 'AUR62022635' => 'cqu', 'AUR62030172' => 'cqu', 'BcaB01g02326' => 'bca', 'BcaB05g21759' => 'bca', 'BcaC01g06850' => 'bca', 'BcaC03g12947' => 'bca', 'BcaC04g24132' => 'bca', 'BcaC06g32157' => 'bca', 'BolC2t06152H' => 'bol', 'BolC2t09840H' => 'bol', 'BolC3t16167H' => 'bol', 'BolC9t53010H' => 'bol', 'BolC9t59972H' => 'bol', 'BraA02t07415Z' => 'bra', 'BraA03t12365Z' => 'bra', 'BraA09t35742Z' => 'bra', 'BraA10t45207Z' => 'bra', 'C02p01950' => 'bna', 'C02p38250' => 'bna', 'C03p38950' => 'bna', 'C09p00760' => 'bna', 'C09p72280' => 'bna', 'CAN.G135.31' => 'can', 'CAN.G48.14' => 'can', 'CAN.G529.46' => 'can', 'CAN.G78.143' => 'can', 'CANSAT56G0646' => 'cansat', 'CANSAT56G4081' => 'cansat', 'CARHR208790' => 'chi', 'CARHR249090' => 'chi', 'Carub.0006s0341' => 'cru', 'Carub.0006s3625' => 'cru', 'Ca_10462_v3' => 'car', 'Ca_23547_v3' => 'car', 'Ca_30879_v3' => 'car', 'CBR_g8119' => 'cbr', 'Cc02_g10480' => 'ccan', 'Cc02_g38760' => 'ccan', 'CDE02G1209' => 'cde', 'CDE02G1402' => 'cde', 'CDE09G0544' => 'cde', 'Cfa001769' => 'cfa', 'Cfa003855' => 'cfa', 'Ciclev10018649m.g' => 'ccl', 'Ciclev10030581m.g' => 'ccl', 'CiPaw.01G069600' => 'cil', 'CiPaw.01G264500' => 'cil', 'CiPaw.02G037200' => 'cil', 'CiPaw.02G169700' => 'cil', 'ClCG00G004460' => 'cla', 'ClCG05G021470' => 'cla', 'ClCG06G003320' => 'cla', 'ClCG08G007970' => 'cla', 'COL.COLO4_06362' => 'col', 'COL.COLO4_07703' => 'col', 'COL.COLO4_34160' => 'col', 'Cpa.g.sc128.71' => 'cpa', 'Cpa.g.sc128.72' => 'cpa', 'Cpa.g.sc184.12' => 'cpa', 'CsaV3_2G032790' => 'csa', 'CsaV3_5G035780' => 'csa', 'CsaV3_5G036220' => 'csa', 'CsaV3_6G000960' => 'csa', 'CSS0023193' => 'camsi', 'CSS0026488' => 'camsi', 'CSS0035481' => 'camsi', 'CSS0043665' => 'camsi', 'DCAR_006957' => 'dca', 'DCAR_019055' => 'dca', 'Dinv20857' => 'din', 'Dinv32535' => 'din', 'Dinv43879' => 'din', 'Duzib114G0892' => 'dzi', 'Duzib128G0497' => 'dzi', 'Duzib133G0786' => 'dzi', 'Duzib138G0834' => 'dzi', 'Duzib235G0159' => 'dzi', 'ECA233G0301' => 'eca', 'ECA234G3284' => 'eca', 'ECA240G2267' => 'eca', 'EL10Ac1g00336' => 'bvu', 'EL10Ac8g19652' => 'bvu', 'Eucgr.E00083' => 'egr', 'Eucgr.G02730' => 'egr', 'FAN01G0097' => 'fan', 'FAN01G0828' => 'fan', 'FAN03G1732' => 'fan', 'FAN03G2995' => 'fan', 'FAN06G3150' => 'fan', 'FAN06G3444' => 'fan', 'FAN06G3533' => 'fan', 'FAN10G0843' => 'fan', 'FAN10G4099' => 'fan', 'FvH4_7g06830' => 'fve', 'FvH4_7g15660' => 'fve', 'Glyma.07G062100' => 'gma', 'Glyma.10G200000' => 'gma', 'Glyma.16G030100' => 'gma', 'Glyma.20G190500' => 'gma', 'Gohir.A05G290600' => 'ghi', 'Gohir.A08G127200' => 'ghi', 'Gohir.A11G093200' => 'ghi', 'Gohir.D05G291800' => 'ghi', 'Gohir.D08G148600' => 'ghi', 'Gohir.D11G098100' => 'ghi', 'Gorai.004G154300' => 'gra', 'Gorai.007G104300' => 'gra', 'Gorai.009G307600' => 'gra', 'GSVIVG01005024001' => 'vvi', 'GSVIVG01027020001' => 'vvi', 'HanXRQChr02g0051931' => 'han', 'HanXRQChr06g0166941' => 'han', 'HanXRQChr08g0218341' => 'han', 'HanXRQChr16g0523821' => 'han', 'HanXRQChr17g0562251' => 'han', 'Haze_15594' => 'cav', 'Haze_16787' => 'cav', 'Hma1.2p1_0361F.1_g135940' => 'hma', 'Hma1.2p1_0783F.1_g217010' => 'hma', 'HPP92_011535' => 'vpl', 'HPP92_022570' => 'vpl', 'Hund16682' => 'sun', 'Hund17861' => 'sun', 'Hund27234' => 'sun', 'Lalb_Chr02g0151191' => 'lal', 'Lalb_Chr06g0170061' => 'lal', 'Lalb_Chr10g0096531' => 'lal', 'Lalb_Chr17g0338911' => 'lal', 'Lalb_Chr24g0401121' => 'lal', 'Lj2C25G10' => 'lonja', 'Lj3C337T0' => 'lonja', 'Lj3C337T1' => 'lonja', 'Lj3g0010045' => 'lja', 'Lj5g0026880' => 'lja', 'Lj7C505G15' => 'lonja', 'Lj9C594T10' => 'lonja', 'LjContig00435g0005269' => 'lja', 'Lsat_1_v5_gn_3_138461' => 'lsa', 'Lsat_1_v5_gn_4_34080' => 'lsa', 'Lsat_1_v5_gn_5_8501' => 'lsa', 'Lsat_1_v5_gn_6_25500' => 'lsa', 'Lsat_1_v5_gn_7_27840' => 'lsa', 'Lsat_1_v5_gn_8_22761' => 'lsa', 'Manes.01G251000' => 'mes', 'Manes.05G027800' => 'mes', 'Manes.07G093200' => 'mes', 'Mapoly0032s0054' => 'mpo', 'Mapoly0058s0074' => 'mpo', 'Mapoly0073s0095' => 'mpo', 'Mapoly0134s0051' => 'mpo', 'MBI02_g25599_MAGBIO' => 'mbi', 'MBI07_g06317_MAGBIO' => 'mbi', 'MBI07_g45739_MAGBIO' => 'mbi', 'MBI07_g45740_MAGBIO' => 'mbi', 'MBI15_g00068_MAGBIO' => 'mbi', 'MBI15_g22169_MAGBIO' => 'mbi', 'MD01G1073400' => 'mdo', 'MD02G1241600' => 'mdo', 'MD07G1075100' => 'mdo', 'MD07G1075200' => 'mdo', 'Medtr1g090860' => 'mtr', 'Medtr7g012910' => 'mtr', 'Medtr8g028395' => 'mtr', 'MELO3C012379.2' => 'cme', 'MELO3C012422.2' => 'cme', 'MELO3C019854.2' => 'cme', 'MELO3C021173.2' => 'cme', 'Migut.B01815' => 'egut', 'Migut.F01670' => 'egut', 'Migut.N01578' => 'egut', 'MSTRG.20874' => 'ama', 'MSTRG.4828' => 'ama', 'MSTRG.8116' => 'ama', 'Nitab4.5_0000305g0380' => 'nta', 'Nitab4.5_0000593g0320' => 'nta', 'Nitab4.5_0004748g0030' => 'nta', 'Nitab4.5_0006383g0020' => 'nta', 'Nn1g01751' => 'nnu', 'Nn2g13906' => 'nnu', 'Nn6g35162' => 'nnu', 'Nn6g35163' => 'nnu', 'Nn6g35164' => 'nnu', 'Nn6g35168' => 'nnu', 'Nn7g37330' => 'nnu', 'Nn7g37331' => 'nnu', 'Nn8g38871' => 'nnu', 'Oeu004919.1' => 'oeu', 'Oeu022857.1' => 'oeu', 'Oeu060291.1' => 'oeu', 'Os01g0622000' => 'osa', 'Os01g0622066' => 'osa', 'Os10g0546200' => 'osa', 'Peaxi162Scf00321g00216' => 'pax', 'Peaxi162Scf01254g00029' => 'pax', 'PGR042G1970' => 'pgr', 'PGR142G3455' => 'pgr', 'PGSC0003DMG400000078' => 'stu', 'PGSC0003DMG400000261' => 'stu', 'PGSC0003DMG400027328' => 'stu', 'Phvul.007G141200' => 'pvu', 'Phvul.010G105900' => 'pvu', 'Potri.002G166100' => 'ptr', 'Potri.008G029400' => 'ptr', 'Potri.010G232000' => 'ptr', 'Potri.014G092500' => 'ptr', 'Pp3c18_17630' => 'ppa', 'Pp3c21_5280' => 'ppa', 'Prupe.2G095400' => 'ppe', 'Prupe.2G179800' => 'ppe', 'Psat4g157160' => 'psa', 'Psat6g174080' => 'psa', 'PSO063G1346' => 'pso', 'PSO063G6918' => 'pso', 'PSO170G3647' => 'pso', 'PSO339G4809' => 'pso', 'QL03p035321' => 'qlo', 'QL04p058948' => 'qlo', 'QL08p052911' => 'qlo', 'RcHm_v2.0_Chr1g0336581' => 'rch', 'RcHm_v2.0_Chr1g0358361' => 'rch', 'RcHm_v2.0_Chr1g0358371' => 'rch', 'Rhsim01G0168400' => 'rsi', 'Rhsim07G0008900' => 'rsi', 'Rhsim09G0144800' => 'rsi', 'Rhsim11G0144700' => 'rsi', 'RhsimUnG0170000' => 'rsi', 'Sabra02G0145500' => 'sbr', 'Sabra10G0179800' => 'sbr', 'Sabra14G0067100' => 'sbr', 'SalBow3G1047' => 'sbo', 'SalBow5G5061' => 'sbo', 'SalBow6G5918' => 'sbo', 'Sc01g0003110' => 'sci', 'Sc20g0001430' => 'sci', 'Sc23g0002440' => 'sci', 'Sed0009109' => 'sed', 'Sed0011280' => 'sed', 'Sed0012656' => 'sed', 'Sed0024460' => 'sed', 'SEGI_04246' => 'sgi', 'SEGI_12246' => 'sgi', 'SEGI_24653' => 'sgi', 'SEGI_29760' => 'sgi', 'SEGI_35759' => 'sgi', 'SEGI_36466' => 'sgi', 'SGA_v2.0_scaffold112G31629' => 'sas', 'SGA_v2.0_scaffold11G05700' => 'sas', 'SGA_v2.0_scaffold43G16387' => 'sas', 'SGA_v2.0_scaffold62G21511' => 'sas', 'SHI21331' => 'shi', 'SHI21332' => 'shi', 'SHI21333' => 'shi', 'SHI21337' => 'shi', 'SMO200G0158' => 'smo', 'SMO200G0232' => 'smo', 'SMO278G0014' => 'smo', 'SMO278G0028' => 'smo', 'Solyc01g095300.3' => 'sly', 'Solyc11g007840.3' => 'sly', 'Sopen01g039090' => 'spe', 'Sopen11g003700' => 'spe', 'Sp6g00910' => 'spa', 'Sp6g38270' => 'spa', 'TAR374G0937' => 'tar', 'TAR375G0481' => 'tar', 'TAR623G0581' => 'tar', 'THA.LOC104801379' => 'tha', 'THA.LOC104816682' => 'tha', 'THA.LOC104825864' => 'tha', 'Thecc.01G350000' => 'tca', 'Thecc.10G091100' => 'tca', 'Thhalv10012611m.g' => 'esa', 'Thhalv10028385m.g' => 'esa', 'TPR.G18147' => 'tpr', 'TPR.G37850' => 'tpr', 'TPR.G39986' => 'tpr', 'TWI14G0955' => 'twi', 'TWI23G0084' => 'twi', 'TWI38G1322' => 'twi', 'TWI63G1114' => 'twi', 'unitig_62.g23805' => 'ugi', 'unitig_62.g23806' => 'ugi', 'unitig_736.g22317' => 'ugi', 'vmacro10265' => 'vma', 'vmacro13213' => 'vma', 'vmacro13214' => 'vma', 'vmacro15010' => 'vma', 'vmacro20876' => 'vma', 'VMungo0331G0360' => 'vmu', 'VMungo0720G1029' => 'vmu', 'Zm00001eb159550' => 'zma', 'Zm00001eb358450' => 'zma', 'Zm00001eb358480' => 'zma', 'Zm00001eb358490' => 'zma', 'Zm00001eb392000' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001977', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001977' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001977', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '334', 'num_species' => '97' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001977' ) ), 'genes' => array( 'A03p31930' => 'bna', 'A09p00140' => 'bna', 'A10p31610' => 'bna', 'Aa31LG11G5350' => 'aar', 'Aa31LG5G800' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.909' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.1731' => 'aag', 'Actinidia10087' => 'ach', 'Actinidia20139' => 'ach', 'Actinidia34785' => 'ach', 'Actinidia38895' => 'ach', 'Actinidia38896' => 'ach', 'Ah.05g180040' => 'amhyb', 'Ah.05g180050' => 'amhyb', 'Ah.09g232520' => 'amhyb', 'Ah.09g232530' => 'amhyb', 'AL6G14110' => 'aly', 'AL6G52170' => 'aly', 'Aqoxy1G01034' => 'aox', 'Aqoxy1G01052' => 'aox', 'Aqoxy1G01053' => 'aox', 'Aqoxy5G04047' => 'aox', 'arahy.Tifrunner.gnm1.ann1.74524Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BZ31U7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G6UQCB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VW0VG8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X5BQMH' => 'arhy', 'AT4G01210' => 'ath', 'AT5G04480' => 'ath', 'ATR0105G029' => 'atr', 'ATR0109G019' => 'atr', 'ATR0661G098' => 'atr', 'ATR0661G166' => 'atr', 'ATR0661G249' => 'atr', 'ATR0661G502' => 'atr', 'Atru.chr12.922' => 'acertr', 'Atru.chr5.605' => 'acertr', 'AUR62002711' => 'cqu', 'AUR62004428' => 'cqu', 'AUR62022635' => 'cqu', 'AUR62030172' => 'cqu', 'BcaB01g02326' => 'bca', 'BcaB05g21759' => 'bca', 'BcaC01g06850' => 'bca', 'BcaC03g12947' => 'bca', 'BcaC04g24132' => 'bca', 'BcaC06g32157' => 'bca', 'BolC2t06152H' => 'bol', 'BolC2t09840H' => 'bol', 'BolC3t16167H' => 'bol', 'BolC9t53010H' => 'bol', 'BolC9t59972H' => 'bol', 'BraA02t07415Z' => 'bra', 'BraA03t12365Z' => 'bra', 'BraA09t35742Z' => 'bra', 'BraA10t45207Z' => 'bra', 'C02p01950' => 'bna', 'C02p38250' => 'bna', 'C03p38950' => 'bna', 'C09p00760' => 'bna', 'C09p72280' => 'bna', 'CAN.G135.31' => 'can', 'CAN.G48.14' => 'can', 'CAN.G529.46' => 'can', 'CAN.G78.143' => 'can', 'CANSAT56G0646' => 'cansat', 'CANSAT56G4081' => 'cansat', 'CARHR208790' => 'chi', 'CARHR249090' => 'chi', 'Carub.0006s0341' => 'cru', 'Carub.0006s3625' => 'cru', 'Ca_10462_v3' => 'car', 'Ca_23547_v3' => 'car', 'Ca_30879_v3' => 'car', 'CBR_g8119' => 'cbr', 'Cc02_g10480' => 'ccan', 'Cc02_g38760' => 'ccan', 'CDE02G1209' => 'cde', 'CDE02G1402' => 'cde', 'CDE09G0544' => 'cde', 'Cfa001769' => 'cfa', 'Cfa003855' => 'cfa', 'Ciclev10018649m.g' => 'ccl', 'Ciclev10030581m.g' => 'ccl', 'CiPaw.01G069600' => 'cil', 'CiPaw.01G264500' => 'cil', 'CiPaw.02G037200' => 'cil', 'CiPaw.02G169700' => 'cil', 'ClCG00G004460' => 'cla', 'ClCG05G021470' => 'cla', 'ClCG06G003320' => 'cla', 'ClCG08G007970' => 'cla', 'COL.COLO4_06362' => 'col', 'COL.COLO4_07703' => 'col', 'COL.COLO4_34160' => 'col', 'Cpa.g.sc128.71' => 'cpa', 'Cpa.g.sc128.72' => 'cpa', 'Cpa.g.sc184.12' => 'cpa', 'CsaV3_2G032790' => 'csa', 'CsaV3_5G035780' => 'csa', 'CsaV3_5G036220' => 'csa', 'CsaV3_6G000960' => 'csa', 'CSS0023193' => 'camsi', 'CSS0026488' => 'camsi', 'CSS0035481' => 'camsi', 'CSS0043665' => 'camsi', 'DCAR_006957' => 'dca', 'DCAR_019055' => 'dca', 'Dinv20857' => 'din', 'Dinv32535' => 'din', 'Dinv43879' => 'din', 'Duzib114G0892' => 'dzi', 'Duzib128G0497' => 'dzi', 'Duzib133G0786' => 'dzi', 'Duzib138G0834' => 'dzi', 'Duzib235G0159' => 'dzi', 'ECA233G0301' => 'eca', 'ECA234G3284' => 'eca', 'ECA240G2267' => 'eca', 'EL10Ac1g00336' => 'bvu', 'EL10Ac8g19652' => 'bvu', 'Eucgr.E00083' => 'egr', 'Eucgr.G02730' => 'egr', 'FAN01G0097' => 'fan', 'FAN01G0828' => 'fan', 'FAN03G1732' => 'fan', 'FAN03G2995' => 'fan', 'FAN06G3150' => 'fan', 'FAN06G3444' => 'fan', 'FAN06G3533' => 'fan', 'FAN10G0843' => 'fan', 'FAN10G4099' => 'fan', 'FvH4_7g06830' => 'fve', 'FvH4_7g15660' => 'fve', 'Glyma.07G062100' => 'gma', 'Glyma.10G200000' => 'gma', 'Glyma.16G030100' => 'gma', 'Glyma.20G190500' => 'gma', 'Gohir.A05G290600' => 'ghi', 'Gohir.A08G127200' => 'ghi', 'Gohir.A11G093200' => 'ghi', 'Gohir.D05G291800' => 'ghi', 'Gohir.D08G148600' => 'ghi', 'Gohir.D11G098100' => 'ghi', 'Gorai.004G154300' => 'gra', 'Gorai.007G104300' => 'gra', 'Gorai.009G307600' => 'gra', 'GSVIVG01005024001' => 'vvi', 'GSVIVG01027020001' => 'vvi', 'HanXRQChr02g0051931' => 'han', 'HanXRQChr06g0166941' => 'han', 'HanXRQChr08g0218341' => 'han', 'HanXRQChr16g0523821' => 'han', 'HanXRQChr17g0562251' => 'han', 'Haze_15594' => 'cav', 'Haze_16787' => 'cav', 'Hma1.2p1_0361F.1_g135940' => 'hma', 'Hma1.2p1_0783F.1_g217010' => 'hma', 'HPP92_011535' => 'vpl', 'HPP92_022570' => 'vpl', 'Hund16682' => 'sun', 'Hund17861' => 'sun', 'Hund27234' => 'sun', 'Lalb_Chr02g0151191' => 'lal', 'Lalb_Chr06g0170061' => 'lal', 'Lalb_Chr10g0096531' => 'lal', 'Lalb_Chr17g0338911' => 'lal', 'Lalb_Chr24g0401121' => 'lal', 'Lj2C25G10' => 'lonja', 'Lj3C337T0' => 'lonja', 'Lj3C337T1' => 'lonja', 'Lj3g0010045' => 'lja', 'Lj5g0026880' => 'lja', 'Lj7C505G15' => 'lonja', 'Lj9C594T10' => 'lonja', 'LjContig00435g0005269' => 'lja', 'Lsat_1_v5_gn_3_138461' => 'lsa', 'Lsat_1_v5_gn_4_34080' => 'lsa', 'Lsat_1_v5_gn_5_8501' => 'lsa', 'Lsat_1_v5_gn_6_25500' => 'lsa', 'Lsat_1_v5_gn_7_27840' => 'lsa', 'Lsat_1_v5_gn_8_22761' => 'lsa', 'Manes.01G251000' => 'mes', 'Manes.05G027800' => 'mes', 'Manes.07G093200' => 'mes', 'Mapoly0032s0054' => 'mpo', 'Mapoly0058s0074' => 'mpo', 'Mapoly0073s0095' => 'mpo', 'Mapoly0134s0051' => 'mpo', 'MBI02_g25599_MAGBIO' => 'mbi', 'MBI07_g06317_MAGBIO' => 'mbi', 'MBI07_g45739_MAGBIO' => 'mbi', 'MBI07_g45740_MAGBIO' => 'mbi', 'MBI15_g00068_MAGBIO' => 'mbi', 'MBI15_g22169_MAGBIO' => 'mbi', 'MD01G1073400' => 'mdo', 'MD02G1241600' => 'mdo', 'MD07G1075100' => 'mdo', 'MD07G1075200' => 'mdo', 'Medtr1g090860' => 'mtr', 'Medtr7g012910' => 'mtr', 'Medtr8g028395' => 'mtr', 'MELO3C012379.2' => 'cme', 'MELO3C012422.2' => 'cme', 'MELO3C019854.2' => 'cme', 'MELO3C021173.2' => 'cme', 'Migut.B01815' => 'egut', 'Migut.F01670' => 'egut', 'Migut.N01578' => 'egut', 'MSTRG.20874' => 'ama', 'MSTRG.4828' => 'ama', 'MSTRG.8116' => 'ama', 'Nitab4.5_0000305g0380' => 'nta', 'Nitab4.5_0000593g0320' => 'nta', 'Nitab4.5_0004748g0030' => 'nta', 'Nitab4.5_0006383g0020' => 'nta', 'Nn1g01751' => 'nnu', 'Nn2g13906' => 'nnu', 'Nn6g35162' => 'nnu', 'Nn6g35163' => 'nnu', 'Nn6g35164' => 'nnu', 'Nn6g35168' => 'nnu', 'Nn7g37330' => 'nnu', 'Nn7g37331' => 'nnu', 'Nn8g38871' => 'nnu', 'Oeu004919.1' => 'oeu', 'Oeu022857.1' => 'oeu', 'Oeu060291.1' => 'oeu', 'Os01g0622000' => 'osa', 'Os01g0622066' => 'osa', 'Os10g0546200' => 'osa', 'Peaxi162Scf00321g00216' => 'pax', 'Peaxi162Scf01254g00029' => 'pax', 'PGR042G1970' => 'pgr', 'PGR142G3455' => 'pgr', 'PGSC0003DMG400000078' => 'stu', 'PGSC0003DMG400000261' => 'stu', 'PGSC0003DMG400027328' => 'stu', 'Phvul.007G141200' => 'pvu', 'Phvul.010G105900' => 'pvu', 'Potri.002G166100' => 'ptr', 'Potri.008G029400' => 'ptr', 'Potri.010G232000' => 'ptr', 'Potri.014G092500' => 'ptr', 'Pp3c18_17630' => 'ppa', 'Pp3c21_5280' => 'ppa', 'Prupe.2G095400' => 'ppe', 'Prupe.2G179800' => 'ppe', 'Psat4g157160' => 'psa', 'Psat6g174080' => 'psa', 'PSO063G1346' => 'pso', 'PSO063G6918' => 'pso', 'PSO170G3647' => 'pso', 'PSO339G4809' => 'pso', 'QL03p035321' => 'qlo', 'QL04p058948' => 'qlo', 'QL08p052911' => 'qlo', 'RcHm_v2.0_Chr1g0336581' => 'rch', 'RcHm_v2.0_Chr1g0358361' => 'rch', 'RcHm_v2.0_Chr1g0358371' => 'rch', 'Rhsim01G0168400' => 'rsi', 'Rhsim07G0008900' => 'rsi', 'Rhsim09G0144800' => 'rsi', 'Rhsim11G0144700' => 'rsi', 'RhsimUnG0170000' => 'rsi', 'Sabra02G0145500' => 'sbr', 'Sabra10G0179800' => 'sbr', 'Sabra14G0067100' => 'sbr', 'SalBow3G1047' => 'sbo', 'SalBow5G5061' => 'sbo', 'SalBow6G5918' => 'sbo', 'Sc01g0003110' => 'sci', 'Sc20g0001430' => 'sci', 'Sc23g0002440' => 'sci', 'Sed0009109' => 'sed', 'Sed0011280' => 'sed', 'Sed0012656' => 'sed', 'Sed0024460' => 'sed', 'SEGI_04246' => 'sgi', 'SEGI_12246' => 'sgi', 'SEGI_24653' => 'sgi', 'SEGI_29760' => 'sgi', 'SEGI_35759' => 'sgi', 'SEGI_36466' => 'sgi', 'SGA_v2.0_scaffold112G31629' => 'sas', 'SGA_v2.0_scaffold11G05700' => 'sas', 'SGA_v2.0_scaffold43G16387' => 'sas', 'SGA_v2.0_scaffold62G21511' => 'sas', 'SHI21331' => 'shi', 'SHI21332' => 'shi', 'SHI21333' => 'shi', 'SHI21337' => 'shi', 'SMO200G0158' => 'smo', 'SMO200G0232' => 'smo', 'SMO278G0014' => 'smo', 'SMO278G0028' => 'smo', 'Solyc01g095300.3' => 'sly', 'Solyc11g007840.3' => 'sly', 'Sopen01g039090' => 'spe', 'Sopen11g003700' => 'spe', 'Sp6g00910' => 'spa', 'Sp6g38270' => 'spa', 'TAR374G0937' => 'tar', 'TAR375G0481' => 'tar', 'TAR623G0581' => 'tar', 'THA.LOC104801379' => 'tha', 'THA.LOC104816682' => 'tha', 'THA.LOC104825864' => 'tha', 'Thecc.01G350000' => 'tca', 'Thecc.10G091100' => 'tca', 'Thhalv10012611m.g' => 'esa', 'Thhalv10028385m.g' => 'esa', 'TPR.G18147' => 'tpr', 'TPR.G37850' => 'tpr', 'TPR.G39986' => 'tpr', 'TWI14G0955' => 'twi', 'TWI23G0084' => 'twi', 'TWI38G1322' => 'twi', 'TWI63G1114' => 'twi', 'unitig_62.g23805' => 'ugi', 'unitig_62.g23806' => 'ugi', 'unitig_736.g22317' => 'ugi', 'vmacro10265' => 'vma', 'vmacro13213' => 'vma', 'vmacro13214' => 'vma', 'vmacro15010' => 'vma', 'vmacro20876' => 'vma', 'VMungo0331G0360' => 'vmu', 'VMungo0720G1029' => 'vmu', 'Zm00001eb159550' => 'zma', 'Zm00001eb358450' => 'zma', 'Zm00001eb358480' => 'zma', 'Zm00001eb358490' => 'zma', 'Zm00001eb392000' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001977' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001977' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001977' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001977' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151