Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p31930 Brassica napus
A09p00140 Brassica napus
A10p31610 Brassica napus
Aa31LG11G5350 Aethionema arabicum
Aa31LG5G800 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.909 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_340.1731 Anthoceros agrestis
Actinidia10087 Actinidia chinensis
Actinidia20139 Actinidia chinensis
Actinidia34785 Actinidia chinensis
Actinidia38895 Actinidia chinensis
Actinidia38896 Actinidia chinensis
Ah.05g180040 Amaranthus hybridus
Ah.05g180050 Amaranthus hybridus
Ah.09g232520 Amaranthus hybridus
Ah.09g232530 Amaranthus hybridus
AL6G14110 Arabidopsis lyrata
AL6G52170 Arabidopsis lyrata
Aqoxy1G01034 Aquilegia oxysepala
Aqoxy1G01052 Aquilegia oxysepala
Aqoxy1G01053 Aquilegia oxysepala
Aqoxy5G04047 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.74524Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BZ31U7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G6UQCB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VW0VG8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.X5BQMH Arachis hypogaea
AT4G01210 Arabidopsis thaliana
AT5G04480 Arabidopsis thaliana
ATR0105G029 Amborella trichopoda
ATR0109G019 Amborella trichopoda
ATR0661G098 Amborella trichopoda
ATR0661G166 Amborella trichopoda
ATR0661G249 Amborella trichopoda
ATR0661G502 Amborella trichopoda
Atru.chr12.922 Acer truncatum
Atru.chr5.605 Acer truncatum
AUR62002711 Chenopodium quinoa
AUR62004428 Chenopodium quinoa
AUR62022635 Chenopodium quinoa
AUR62030172 Chenopodium quinoa
BcaB01g02326 Brassica carinata
BcaB05g21759 Brassica carinata
BcaC01g06850 Brassica carinata
BcaC03g12947 Brassica carinata
BcaC04g24132 Brassica carinata
BcaC06g32157 Brassica carinata
BolC2t06152H Brassica oleracea
BolC2t09840H Brassica oleracea
BolC3t16167H Brassica oleracea
BolC9t53010H Brassica oleracea
BolC9t59972H Brassica oleracea
BraA02t07415Z Brassica rapa
BraA03t12365Z Brassica rapa
BraA09t35742Z Brassica rapa
BraA10t45207Z Brassica rapa
C02p01950 Brassica napus
C02p38250 Brassica napus
C03p38950 Brassica napus
C09p00760 Brassica napus
C09p72280 Brassica napus
CAN.G135.31 Capsicum annuum
CAN.G48.14 Capsicum annuum
CAN.G529.46 Capsicum annuum
CAN.G78.143 Capsicum annuum
CANSAT56G0646 Cannabis sativa
CANSAT56G4081 Cannabis sativa
CARHR208790 Cardamine hirsuta
CARHR249090 Cardamine hirsuta
Carub.0006s0341 Capsella rubella
Carub.0006s3625 Capsella rubella
Ca_10462_v3 Cicer arietinum L.
Ca_23547_v3 Cicer arietinum L.
Ca_30879_v3 Cicer arietinum L.
CBR_g8119 Chara braunii
Cc02_g10480 Coffea canephora
Cc02_g38760 Coffea canephora
CDE02G1209 Ceratophyllum demersum
CDE02G1402 Ceratophyllum demersum
CDE09G0544 Ceratophyllum demersum
Cfa001769 Carpinus fangiana
Cfa003855 Carpinus fangiana
Ciclev10018649m.g Citrus clementina
Ciclev10030581m.g Citrus clementina
CiPaw.01G069600 Carya illinoinensis
CiPaw.01G264500 Carya illinoinensis
CiPaw.02G037200 Carya illinoinensis
CiPaw.02G169700 Carya illinoinensis
ClCG00G004460 Citrullus lanatus
ClCG05G021470 Citrullus lanatus
ClCG06G003320 Citrullus lanatus
ClCG08G007970 Citrullus lanatus
COL.COLO4_06362 Corchorus olitorius
COL.COLO4_07703 Corchorus olitorius
COL.COLO4_34160 Corchorus olitorius
Cpa.g.sc128.71 Carica papaya
Cpa.g.sc128.72 Carica papaya
Cpa.g.sc184.12 Carica papaya
CsaV3_2G032790 Cucumis sativus L.
CsaV3_5G035780 Cucumis sativus L.
CsaV3_5G036220 Cucumis sativus L.
CsaV3_6G000960 Cucumis sativus L.
CSS0023193 Camellia sinensis var. sinensis
CSS0026488 Camellia sinensis var. sinensis
CSS0035481 Camellia sinensis var. sinensis
CSS0043665 Camellia sinensis var. sinensis
DCAR_006957 Daucus carota
DCAR_019055 Daucus carota
Dinv20857 Davidia involucrata
Dinv32535 Davidia involucrata
Dinv43879 Davidia involucrata
Duzib114G0892 Durio zibethinus
Duzib128G0497 Durio zibethinus
Duzib133G0786 Durio zibethinus
Duzib138G0834 Durio zibethinus
Duzib235G0159 Durio zibethinus
ECA233G0301 Erigeron canadensis
ECA234G3284 Erigeron canadensis
ECA240G2267 Erigeron canadensis
EL10Ac1g00336 Beta vulgaris
EL10Ac8g19652 Beta vulgaris
Eucgr.E00083 Eucalyptus grandis
Eucgr.G02730 Eucalyptus grandis
FAN01G0097 Fragaria x ananassa
FAN01G0828 Fragaria x ananassa
FAN03G1732 Fragaria x ananassa
FAN03G2995 Fragaria x ananassa
FAN06G3150 Fragaria x ananassa
FAN06G3444 Fragaria x ananassa
FAN06G3533 Fragaria x ananassa
FAN10G0843 Fragaria x ananassa
FAN10G4099 Fragaria x ananassa
FvH4_7g06830 Fragaria vesca
FvH4_7g15660 Fragaria vesca
Glyma.07G062100 Glycine max
Glyma.10G200000 Glycine max
Glyma.16G030100 Glycine max
Glyma.20G190500 Glycine max
Gohir.A05G290600 Gossypium hirsutum
Gohir.A08G127200 Gossypium hirsutum
Gohir.A11G093200 Gossypium hirsutum
Gohir.D05G291800 Gossypium hirsutum
Gohir.D08G148600 Gossypium hirsutum
Gohir.D11G098100 Gossypium hirsutum
Gorai.004G154300 Gossypium raimondii
Gorai.007G104300 Gossypium raimondii
Gorai.009G307600 Gossypium raimondii
GSVIVG01005024001 Vitis vinifera
GSVIVG01027020001 Vitis vinifera
HanXRQChr02g0051931 Helianthus annuus
HanXRQChr06g0166941 Helianthus annuus
HanXRQChr08g0218341 Helianthus annuus
HanXRQChr16g0523821 Helianthus annuus
HanXRQChr17g0562251 Helianthus annuus
Haze_15594 Corylus avellana
Haze_16787 Corylus avellana
Hma1.2p1_0361F.1_g135940 Hydrangea macrophylla
Hma1.2p1_0783F.1_g217010 Hydrangea macrophylla
HPP92_011535 Vanilla planifolia
HPP92_022570 Vanilla planifolia
Hund16682 Selenicereus undatus
Hund17861 Selenicereus undatus
Hund27234 Selenicereus undatus
Lalb_Chr02g0151191 Lupinus albus
Lalb_Chr06g0170061 Lupinus albus
Lalb_Chr10g0096531 Lupinus albus
Lalb_Chr17g0338911 Lupinus albus
Lalb_Chr24g0401121 Lupinus albus
Lj2C25G10 Lonicera japonica
Lj3C337T0 Lonicera japonica
Lj3C337T1 Lonicera japonica
Lj3g0010045 Lotus japonicus
Lj5g0026880 Lotus japonicus
Lj7C505G15 Lonicera japonica
Lj9C594T10 Lonicera japonica
LjContig00435g0005269 Lotus japonicus
Lsat_1_v5_gn_3_138461 Lactuca sativa
Lsat_1_v5_gn_4_34080 Lactuca sativa
Lsat_1_v5_gn_5_8501 Lactuca sativa
Lsat_1_v5_gn_6_25500 Lactuca sativa
Lsat_1_v5_gn_7_27840 Lactuca sativa
Lsat_1_v5_gn_8_22761 Lactuca sativa
Manes.01G251000 Manihot esculenta
Manes.05G027800 Manihot esculenta
Manes.07G093200 Manihot esculenta
Mapoly0032s0054 Marchantia polymorpha
Mapoly0058s0074 Marchantia polymorpha
Mapoly0073s0095 Marchantia polymorpha
Mapoly0134s0051 Marchantia polymorpha
MBI02_g25599_MAGBIO Magnolia biondii
MBI07_g06317_MAGBIO Magnolia biondii
MBI07_g45739_MAGBIO Magnolia biondii
MBI07_g45740_MAGBIO Magnolia biondii
MBI15_g00068_MAGBIO Magnolia biondii
MBI15_g22169_MAGBIO Magnolia biondii
MD01G1073400 Malus domestica
MD02G1241600 Malus domestica
MD07G1075100 Malus domestica
MD07G1075200 Malus domestica
Medtr1g090860 Medicago truncatula
Medtr7g012910 Medicago truncatula
Medtr8g028395 Medicago truncatula
MELO3C012379.2 Cucumis melo
MELO3C012422.2 Cucumis melo
MELO3C019854.2 Cucumis melo
MELO3C021173.2 Cucumis melo
Migut.B01815 Erythranthe guttata
Migut.F01670 Erythranthe guttata
Migut.N01578 Erythranthe guttata
MSTRG.20874 Avicennia marina
MSTRG.4828 Avicennia marina
MSTRG.8116 Avicennia marina
Nitab4.5_0000305g0380 Nicotiana tabacum
Nitab4.5_0000593g0320 Nicotiana tabacum
Nitab4.5_0004748g0030 Nicotiana tabacum
Nitab4.5_0006383g0020 Nicotiana tabacum
Nn1g01751 Nelumbo nucifera
Nn2g13906 Nelumbo nucifera
Nn6g35162 Nelumbo nucifera
Nn6g35163 Nelumbo nucifera
Nn6g35164 Nelumbo nucifera
Nn6g35168 Nelumbo nucifera
Nn7g37330 Nelumbo nucifera
Nn7g37331 Nelumbo nucifera
Nn8g38871 Nelumbo nucifera
Oeu004919.1 Olea europaea
Oeu022857.1 Olea europaea
Oeu060291.1 Olea europaea
Os01g0622000 Oryza sativa ssp. japonica
Os01g0622066 Oryza sativa ssp. japonica
Os10g0546200 Oryza sativa ssp. japonica
Peaxi162Scf00321g00216 Petunia axillaris
Peaxi162Scf01254g00029 Petunia axillaris
PGR042G1970 Punica granatum
PGR142G3455 Punica granatum
PGSC0003DMG400000078 Solanum tuberosum
PGSC0003DMG400000261 Solanum tuberosum
PGSC0003DMG400027328 Solanum tuberosum
Phvul.007G141200 Phaseolus vulgaris
Phvul.010G105900 Phaseolus vulgaris
Potri.002G166100 Populus trichocarpa
Potri.008G029400 Populus trichocarpa
Potri.010G232000 Populus trichocarpa
Potri.014G092500 Populus trichocarpa
Pp3c18_17630 Physcomitrium patens
Pp3c21_5280 Physcomitrium patens
Prupe.2G095400 Prunus persica
Prupe.2G179800 Prunus persica
Psat4g157160 Pisum sativum
Psat6g174080 Pisum sativum
PSO063G1346 Papaver somniferum
PSO063G6918 Papaver somniferum
PSO170G3647 Papaver somniferum
PSO339G4809 Papaver somniferum
QL03p035321 Quercus lobata
QL04p058948 Quercus lobata
QL08p052911 Quercus lobata
RcHm_v2.0_Chr1g0336581 Rosa chinensis
RcHm_v2.0_Chr1g0358361 Rosa chinensis
RcHm_v2.0_Chr1g0358371 Rosa chinensis
Rhsim01G0168400 Rhododendron simsii
Rhsim07G0008900 Rhododendron simsii
Rhsim09G0144800 Rhododendron simsii
Rhsim11G0144700 Rhododendron simsii
RhsimUnG0170000 Rhododendron simsii
Sabra02G0145500 Salix brachista
Sabra10G0179800 Salix brachista
Sabra14G0067100 Salix brachista
SalBow3G1047 Salvia bowleyana
SalBow5G5061 Salvia bowleyana
SalBow6G5918 Salvia bowleyana
Sc01g0003110 Simmondsia chinensis
Sc20g0001430 Simmondsia chinensis
Sc23g0002440 Simmondsia chinensis
Sed0009109 Sechium edule
Sed0011280 Sechium edule
Sed0012656 Sechium edule
Sed0024460 Sechium edule
SEGI_04246 Sequoiadendron giganteum
SEGI_12246 Sequoiadendron giganteum
SEGI_24653 Sequoiadendron giganteum
SEGI_29760 Sequoiadendron giganteum
SEGI_35759 Sequoiadendron giganteum
SEGI_36466 Sequoiadendron giganteum
SGA_v2.0_scaffold112G31629 Striga asiatica
SGA_v2.0_scaffold11G05700 Striga asiatica
SGA_v2.0_scaffold43G16387 Striga asiatica
SGA_v2.0_scaffold62G21511 Striga asiatica
SHI21331 Sapria himalayana
SHI21332 Sapria himalayana
SHI21333 Sapria himalayana
SHI21337 Sapria himalayana
SMO200G0158 Selaginella moellendorffii
SMO200G0232 Selaginella moellendorffii
SMO278G0014 Selaginella moellendorffii
SMO278G0028 Selaginella moellendorffii
Solyc01g095300.3 Solanum lycopersicum
Solyc11g007840.3 Solanum lycopersicum
Sopen01g039090 Solanum pennellii
Sopen11g003700 Solanum pennellii
Sp6g00910 Schrenkiella parvula
Sp6g38270 Schrenkiella parvula
TAR374G0937 Trochodendron aralioides
TAR375G0481 Trochodendron aralioides
TAR623G0581 Trochodendron aralioides
THA.LOC104801379 Tarenaya hassleriana
THA.LOC104816682 Tarenaya hassleriana
THA.LOC104825864 Tarenaya hassleriana
Thecc.01G350000 Theobroma cacao
Thecc.10G091100 Theobroma cacao
Thhalv10012611m.g Eutrema salsugineum
Thhalv10028385m.g Eutrema salsugineum
TPR.G18147 Trifolium pratense
TPR.G37850 Trifolium pratense
TPR.G39986 Trifolium pratense
TWI14G0955 Tripterygium wilfordii
TWI23G0084 Tripterygium wilfordii
TWI38G1322 Tripterygium wilfordii
TWI63G1114 Tripterygium wilfordii
unitig_62.g23805 Utricularia gibba
unitig_62.g23806 Utricularia gibba
unitig_736.g22317 Utricularia gibba
vmacro10265 Vaccinium macrocarpon
vmacro13213 Vaccinium macrocarpon
vmacro13214 Vaccinium macrocarpon
vmacro15010 Vaccinium macrocarpon
vmacro20876 Vaccinium macrocarpon
VMungo0331G0360 Vigna mungo
VMungo0720G1029 Vigna mungo
Zm00001eb159550 Zea mays
Zm00001eb358450 Zea mays
Zm00001eb358480 Zea mays
Zm00001eb358490 Zea mays
Zm00001eb392000 Zea mays

User provided reference genes

Program Settings