Notice (8): Undefined variable: source_groups_information [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '335', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A09p58710' => 'bna', 'Aa31LG8G17650' => 'aar', 'Aa31LG9G15650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3187' => 'aag', 'Actinidia09897' => 'ach', 'Actinidia30484' => 'ach', 'Actinidia39300' => 'ach', 'Actinidia39674' => 'ach', 'Ah.07g207250' => 'amhyb', 'Ah.07g207260' => 'amhyb', 'Ah.13g068530' => 'amhyb', 'AL3G54000' => 'aly', 'AL3G54010' => 'aly', 'Aqoxy1G02707' => 'aox', 'Aqoxy1G02709' => 'aox', 'Aqoxy6G02660' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GKFN23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8K0CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKX56S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QE9TIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI4L3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4L4RH' => 'arhy', 'AT2G20830' => 'ath', 'ATR0693G323' => 'atr', 'ATR1001G005' => 'atr', 'Atru.chr6.3052' => 'acertr', 'Atru.chr6.3053' => 'acertr', 'Atru.chr6.3054' => 'acertr', 'AUR62003378' => 'cqu', 'AUR62019019' => 'cqu', 'AUR62025926' => 'cqu', 'AUR62029450' => 'cqu', 'AUR62029451' => 'cqu', 'AUR62029630' => 'cqu', 'BcaB08g34941' => 'bca', 'BcaC07g41194' => 'bca', 'BolC7t40460H' => 'bol', 'BolC8t51763H' => 'bol', 'BraA09t41257Z' => 'bra', 'C08p42010' => 'bna', 'CAN.G1310.15' => 'can', 'CAN.G1720.5' => 'can', 'CAN.G248.61' => 'can', 'CAN.G996.2' => 'can', 'CAN.G996.3' => 'can', 'CANSAT21G1059' => 'cansat', 'CANSAT64G2152' => 'cansat', 'CANSAT78G0375' => 'cansat', 'CARHR053830' => 'chi', 'CARHR111540' => 'chi', 'Carub.0003s3546' => 'cru', 'Ca_01532_v3' => 'car', 'Ca_01533_v3' => 'car', 'Ca_20693_v3' => 'car', 'Ca_30106_v3' => 'car', 'CBR_g20108' => 'cbr', 'Cc05_g06470' => 'ccan', 'Cc05_g06480' => 'ccan', 'Cc11_g01770' => 'ccan', 'Cc11_g01780' => 'ccan', 'CDE01G0485' => 'cde', 'CDE05G0969' => 'cde', 'CDE12G0465' => 'cde', 'Cfa003704' => 'cfa', 'Cfa012397' => 'cfa', 'Cfa014552' => 'cfa', 'Ciclev10001997m.g' => 'ccl', 'Ciclev10015950m.g' => 'ccl', 'Ciclev10017445m.g' => 'ccl', 'CiPaw.03G170700' => 'cil', 'CiPaw.04G123100' => 'cil', 'CiPaw.04G123200' => 'cil', 'CiPaw.16G086600' => 'cil', 'ClCG02G017400' => 'cla', 'COL.COLO4_13690' => 'col', 'COL.COLO4_13691' => 'col', 'COL.COLO4_13692' => 'col', 'Cpa.g.sc17.168' => 'cpa', 'Cre02.g075550' => 'cre', 'Cre06.g267000' => 'cre', 'CsaV3_6G012510' => 'csa', 'CsaV3_6G012530' => 'csa', 'CSS0015749' => 'camsi', 'CSS0025708' => 'camsi', 'CSS0039076' => 'camsi', 'CSS0050003' => 'camsi', 'DCAR_009732' => 'dca', 'DCAR_011200' => 'dca', 'DCAR_012986' => 'dca', 'Dinv15475' => 'din', 'Dinv15476' => 'din', 'Dinv23698' => 'din', 'Dinv23699' => 'din', 'Dinv23700' => 'din', 'Duzib132G0995' => 'dzi', 'Duzib248G0251' => 'dzi', 'Duzib248G0568' => 'dzi', 'ECA233G3782' => 'eca', 'ECA236G1367' => 'eca', 'EL10Ac3g05654' => 'bvu', 'EL10Ac8g18888' => 'bvu', 'Eucgr.A01786' => 'egr', 'Eucgr.K00932' => 'egr', 'Eucgr.K00933' => 'egr', 'Eucgr.K00935' => 'egr', 'Eucgr.K00936' => 'egr', 'FAN02G3777' => 'fan', 'FAN02G4205' => 'fan', 'FAN05G0495' => 'fan', 'FAN09G0082' => 'fan', 'FAN09G2888' => 'fan', 'FAN14G0313' => 'fan', 'FAN14G0686' => 'fan', 'FAN14G2141' => 'fan', 'FAN14G2345' => 'fan', 'FAN14G3823' => 'fan', 'FAN14G4464' => 'fan', 'FvH4_6g44860' => 'fve', 'FvH4_6g44870' => 'fve', 'Glyma.01G070400' => 'gma', 'Glyma.02G127600' => 'gma', 'Glyma.09G257600' => 'gma', 'Glyma.12G201700' => 'gma', 'Glyma.13G300500' => 'gma', 'Glyma.18G235000' => 'gma', 'Gohir.A03G159500' => 'ghi', 'Gohir.A03G159600' => 'ghi', 'Gohir.D02G182500' => 'ghi', 'Gohir.D02G182600' => 'ghi', 'Gohir.D02G182700' => 'ghi', 'Gorai.005G205100' => 'gra', 'GSVIVG01030573001' => 'vvi', 'GSVIVG01030574001' => 'vvi', 'GSVIVG01030575001' => 'vvi', 'HanXRQChr06g0167021' => 'han', 'HanXRQChr09g0274351' => 'han', 'HanXRQChr11g0350221' => 'han', 'HanXRQChr17g0533531' => 'han', 'HanXRQChr17g0533551' => 'han', 'HanXRQChr17g0533561' => 'han', 'Haze_13099' => 'cav', 'Haze_13100' => 'cav', 'Haze_15783' => 'cav', 'Hma1.2p1_0213F.1_g090530' => 'hma', 'Hma1.2p1_0213F.1_g090570' => 'hma', 'Hma1.2p1_0384F.1_g141150' => 'hma', 'Hma1.2p1_0565F.1_g179360' => 'hma', 'Hma1.2p1_0832F.1_g225700' => 'hma', 'Hma1.2p1_1820F.1_g304180' => 'hma', 'HPP92_010084' => 'vpl', 'HPP92_010093' => 'vpl', 'HPP92_022510' => 'vpl', 'Hund15989' => 'sun', 'Lalb_Chr19g0135421' => 'lal', 'Lalb_Chr22g0356381' => 'lal', 'Lalb_Chr22g0356391' => 'lal', 'Lj1A735T46' => 'lonja', 'Lj1C735T3' => 'lonja', 'Lj2g0006312' => 'lja', 'Lj3g0006045' => 'lja', 'Lj3g0021806' => 'lja', 'Lj3g0026770' => 'lja', 'Lju41E32T0' => 'lonja', 'Lsat_1_v5_gn_2_3941' => 'lsa', 'Lsat_1_v5_gn_3_137700' => 'lsa', 'Lsat_1_v5_gn_8_131741' => 'lsa', 'Manes.06G013500' => 'mes', 'Manes.13G150800' => 'mes', 'Manes.13G150900' => 'mes', 'Manes.13G150950' => 'mes', 'Mapoly0071s0092' => 'mpo', 'Mapoly0085s0037' => 'mpo', 'MBI02_g26441_MAGBIO' => 'mbi', 'MBI02_g35916_MAGBIO' => 'mbi', 'MBI02_g46699_MAGBIO' => 'mbi', 'MBI02_g48137_MAGBIO' => 'mbi', 'MBI04_g38761_MAGBIO' => 'mbi', 'MBI06_g08467_MAGBIO' => 'mbi', 'MCO02G305' => 'mco', 'MCO09G677' => 'mco', 'MD09G1092400' => 'mdo', 'MD09G1092500' => 'mdo', 'MD09G1092600' => 'mdo', 'MD17G1082400' => 'mdo', 'MD17G1082500' => 'mdo', 'MD17G1082600' => 'mdo', 'MD17G1082700' => 'mdo', 'Medtr2g090055' => 'mtr', 'Medtr2g090060' => 'mtr', 'Medtr2g090070' => 'mtr', 'Medtr4g046043' => 'mtr', 'Medtr4g065010' => 'mtr', 'MELO3C013524.2' => 'cme', 'Migut.H00150' => 'egut', 'Migut.H01027' => 'egut', 'Migut.H01028' => 'egut', 'MSTRG.14186' => 'ama', 'MSTRG.23988' => 'ama', 'Nitab4.5_0002260g0270' => 'nta', 'Nitab4.5_0003018g0040' => 'nta', 'Nitab4.5_0003069g0040' => 'nta', 'Nitab4.5_0003358g0010' => 'nta', 'Nitab4.5_0005244g0040' => 'nta', 'Nitab4.5_0006575g0040' => 'nta', 'Nitab4.5_0007732g0020' => 'nta', 'Nitab4.5_0008772g0020' => 'nta', 'Nitab4.5_0013575g0010' => 'nta', 'Nn1g03931' => 'nnu', 'Nn1g06728' => 'nnu', 'Nn1g06729' => 'nnu', 'Nn1g06730' => 'nnu', 'Oeu015786.1' => 'oeu', 'Oeu015814.1' => 'oeu', 'Oeu015815.1' => 'oeu', 'Oeu025510.1' => 'oeu', 'Oeu047331.1' => 'oeu', 'Os03g0582000' => 'osa', 'Os06g0128000' => 'osa', 'Os07g0530300' => 'osa', 'Peaxi162Scf00132g00081' => 'pax', 'Peaxi162Scf00132g00731' => 'pax', 'Peaxi162Scf00132g00822' => 'pax', 'Peaxi162Scf00423g00066' => 'pax', 'PGR042G1344' => 'pgr', 'PGR142G0421' => 'pgr', 'PGSC0003DMG400018320' => 'stu', 'PGSC0003DMG400018321' => 'stu', 'PGSC0003DMG400022306' => 'stu', 'Phvul.003G044600' => 'pvu', 'Phvul.005G107300' => 'pvu', 'Phvul.011G177800' => 'pvu', 'Potri.013G145600' => 'ptr', 'Potri.013G145700' => 'ptr', 'Potri.013G145800' => 'ptr', 'Potri.019G104700' => 'ptr', 'Pp3c2_17510' => 'ppa', 'Pp3c6_17280' => 'ppa', 'PRCOL_00005805' => 'pco', 'Prupe.3G232600' => 'ppe', 'Prupe.3G232700' => 'ppe', 'Psat5g270040' => 'psa', 'Psat5g270080' => 'psa', 'Psat7g197120' => 'psa', 'PSO017G7338' => 'pso', 'PSO339G1404' => 'pso', 'PSO339G1568' => 'pso', 'PSO384G0971' => 'pso', 'PSO384G2148' => 'pso', 'PSO541G0359' => 'pso', 'PSO675G2972' => 'pso', 'PSO675G3871' => 'pso', 'PSO675G3991' => 'pso', 'PSO675G6940' => 'pso', 'QL08p048209' => 'qlo', 'QL10p048419' => 'qlo', 'QL10p048424' => 'qlo', 'QL10p048442' => 'qlo', 'RcHm_v2.0_Chr2g0127151' => 'rch', 'RcHm_v2.0_Chr2g0162051' => 'rch', 'RcHm_v2.0_Chr2g0162061' => 'rch', 'Rhsim04G0021700' => 'rsi', 'Rhsim04G0065900' => 'rsi', 'Rhsim06G0150200' => 'rsi', 'Sabra13G0117300' => 'sbr', 'Sabra13G0117400' => 'sbr', 'SalBow1G0343' => 'sbo', 'SalBow1G1242' => 'sbo', 'SalBow1G8609' => 'sbo', 'SalBow4G1514' => 'sbo', 'SalBow6G0009' => 'sbo', 'SalBow7G0057' => 'sbo', 'SalBow7G2523' => 'sbo', 'SalBow7G4035' => 'sbo', 'SalBow7G4170' => 'sbo', 'Sc03g0002190' => 'sci', 'Sc06g0009180' => 'sci', 'Sc12g0002730' => 'sci', 'Sc12g0003980' => 'sci', 'Sed0009336' => 'sed', 'Sed0010350' => 'sed', 'Sed0013701' => 'sed', 'Sed0014445' => 'sed', 'Sed0018478' => 'sed', 'SEGI_15509' => 'sgi', 'SEGI_26592' => 'sgi', 'SGA_v2.0_scaffold130G34329' => 'sas', 'SGA_v2.0_scaffold135G34841' => 'sas', 'SGA_v2.0_scaffold159G37632' => 'sas', 'SGA_v2.0_scaffold3G01553' => 'sas', 'SMO351G0323' => 'smo', 'SMO356G0334' => 'smo', 'Solyc07g054420.2' => 'sly', 'Solyc07g054430.3' => 'sly', 'Solyc07g064840.3' => 'sly', 'Sopen07g028350' => 'spe', 'Sopen07g028360' => 'spe', 'Sopen07g033040' => 'spe', 'Sp3g34070' => 'spa', 'TAR627G0343' => 'tar', 'TAR627G0582' => 'tar', 'TAR629G1647' => 'tar', 'TAR629G2626' => 'tar', 'TAR629G2902' => 'tar', 'THA.LOC104811178' => 'tha', 'THA.LOC104814491' => 'tha', 'Thecc.02G172900' => 'tca', 'Thecc.02G173000' => 'tca', 'Thecc.02G173100' => 'tca', 'Thhalv10001991m.g' => 'esa', 'TPR.G21647' => 'tpr', 'TPR.G27095' => 'tpr', 'TPR.G27124' => 'tpr', 'TPR.G27126' => 'tpr', 'TPR.G40142' => 'tpr', 'TWI18G1087' => 'twi', 'TWI18G1093' => 'twi', 'TWI36G0604' => 'twi', 'unitig_62.g23188' => 'ugi', 'unitig_748.g8143' => 'ugi', 'vmacro09267' => 'vma', 'vmacro09268' => 'vma', 'vmacro12265' => 'vma', 'VMungo1080G0966' => 'vmu', 'VMungo1127G0255' => 'vmu', 'VMungo1215G0573' => 'vmu', 'Zm00001eb072880' => 'zma', 'Zm00001eb194600' => 'zma', 'Zm00001eb194610' => 'zma', 'Zm00001eb200630' => 'zma', 'Zm00001eb219580' => 'zma', 'Zm00001eb225500' => 'zma', 'Zm00001eb350110' => 'zma', 'Zm00001eb378790' => 'zma', 'Zm00001eb414500' => 'zma', 'Zm00001eb414510' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001969', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001969' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '335', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001969' ) ), 'genes' => array( 'A09p58710' => 'bna', 'Aa31LG8G17650' => 'aar', 'Aa31LG9G15650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3187' => 'aag', 'Actinidia09897' => 'ach', 'Actinidia30484' => 'ach', 'Actinidia39300' => 'ach', 'Actinidia39674' => 'ach', 'Ah.07g207250' => 'amhyb', 'Ah.07g207260' => 'amhyb', 'Ah.13g068530' => 'amhyb', 'AL3G54000' => 'aly', 'AL3G54010' => 'aly', 'Aqoxy1G02707' => 'aox', 'Aqoxy1G02709' => 'aox', 'Aqoxy6G02660' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GKFN23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8K0CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKX56S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QE9TIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI4L3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4L4RH' => 'arhy', 'AT2G20830' => 'ath', 'ATR0693G323' => 'atr', 'ATR1001G005' => 'atr', 'Atru.chr6.3052' => 'acertr', 'Atru.chr6.3053' => 'acertr', 'Atru.chr6.3054' => 'acertr', 'AUR62003378' => 'cqu', 'AUR62019019' => 'cqu', 'AUR62025926' => 'cqu', 'AUR62029450' => 'cqu', 'AUR62029451' => 'cqu', 'AUR62029630' => 'cqu', 'BcaB08g34941' => 'bca', 'BcaC07g41194' => 'bca', 'BolC7t40460H' => 'bol', 'BolC8t51763H' => 'bol', 'BraA09t41257Z' => 'bra', 'C08p42010' => 'bna', 'CAN.G1310.15' => 'can', 'CAN.G1720.5' => 'can', 'CAN.G248.61' => 'can', 'CAN.G996.2' => 'can', 'CAN.G996.3' => 'can', 'CANSAT21G1059' => 'cansat', 'CANSAT64G2152' => 'cansat', 'CANSAT78G0375' => 'cansat', 'CARHR053830' => 'chi', 'CARHR111540' => 'chi', 'Carub.0003s3546' => 'cru', 'Ca_01532_v3' => 'car', 'Ca_01533_v3' => 'car', 'Ca_20693_v3' => 'car', 'Ca_30106_v3' => 'car', 'CBR_g20108' => 'cbr', 'Cc05_g06470' => 'ccan', 'Cc05_g06480' => 'ccan', 'Cc11_g01770' => 'ccan', 'Cc11_g01780' => 'ccan', 'CDE01G0485' => 'cde', 'CDE05G0969' => 'cde', 'CDE12G0465' => 'cde', 'Cfa003704' => 'cfa', 'Cfa012397' => 'cfa', 'Cfa014552' => 'cfa', 'Ciclev10001997m.g' => 'ccl', 'Ciclev10015950m.g' => 'ccl', 'Ciclev10017445m.g' => 'ccl', 'CiPaw.03G170700' => 'cil', 'CiPaw.04G123100' => 'cil', 'CiPaw.04G123200' => 'cil', 'CiPaw.16G086600' => 'cil', 'ClCG02G017400' => 'cla', 'COL.COLO4_13690' => 'col', 'COL.COLO4_13691' => 'col', 'COL.COLO4_13692' => 'col', 'Cpa.g.sc17.168' => 'cpa', 'Cre02.g075550' => 'cre', 'Cre06.g267000' => 'cre', 'CsaV3_6G012510' => 'csa', 'CsaV3_6G012530' => 'csa', 'CSS0015749' => 'camsi', 'CSS0025708' => 'camsi', 'CSS0039076' => 'camsi', 'CSS0050003' => 'camsi', 'DCAR_009732' => 'dca', 'DCAR_011200' => 'dca', 'DCAR_012986' => 'dca', 'Dinv15475' => 'din', 'Dinv15476' => 'din', 'Dinv23698' => 'din', 'Dinv23699' => 'din', 'Dinv23700' => 'din', 'Duzib132G0995' => 'dzi', 'Duzib248G0251' => 'dzi', 'Duzib248G0568' => 'dzi', 'ECA233G3782' => 'eca', 'ECA236G1367' => 'eca', 'EL10Ac3g05654' => 'bvu', 'EL10Ac8g18888' => 'bvu', 'Eucgr.A01786' => 'egr', 'Eucgr.K00932' => 'egr', 'Eucgr.K00933' => 'egr', 'Eucgr.K00935' => 'egr', 'Eucgr.K00936' => 'egr', 'FAN02G3777' => 'fan', 'FAN02G4205' => 'fan', 'FAN05G0495' => 'fan', 'FAN09G0082' => 'fan', 'FAN09G2888' => 'fan', 'FAN14G0313' => 'fan', 'FAN14G0686' => 'fan', 'FAN14G2141' => 'fan', 'FAN14G2345' => 'fan', 'FAN14G3823' => 'fan', 'FAN14G4464' => 'fan', 'FvH4_6g44860' => 'fve', 'FvH4_6g44870' => 'fve', 'Glyma.01G070400' => 'gma', 'Glyma.02G127600' => 'gma', 'Glyma.09G257600' => 'gma', 'Glyma.12G201700' => 'gma', 'Glyma.13G300500' => 'gma', 'Glyma.18G235000' => 'gma', 'Gohir.A03G159500' => 'ghi', 'Gohir.A03G159600' => 'ghi', 'Gohir.D02G182500' => 'ghi', 'Gohir.D02G182600' => 'ghi', 'Gohir.D02G182700' => 'ghi', 'Gorai.005G205100' => 'gra', 'GSVIVG01030573001' => 'vvi', 'GSVIVG01030574001' => 'vvi', 'GSVIVG01030575001' => 'vvi', 'HanXRQChr06g0167021' => 'han', 'HanXRQChr09g0274351' => 'han', 'HanXRQChr11g0350221' => 'han', 'HanXRQChr17g0533531' => 'han', 'HanXRQChr17g0533551' => 'han', 'HanXRQChr17g0533561' => 'han', 'Haze_13099' => 'cav', 'Haze_13100' => 'cav', 'Haze_15783' => 'cav', 'Hma1.2p1_0213F.1_g090530' => 'hma', 'Hma1.2p1_0213F.1_g090570' => 'hma', 'Hma1.2p1_0384F.1_g141150' => 'hma', 'Hma1.2p1_0565F.1_g179360' => 'hma', 'Hma1.2p1_0832F.1_g225700' => 'hma', 'Hma1.2p1_1820F.1_g304180' => 'hma', 'HPP92_010084' => 'vpl', 'HPP92_010093' => 'vpl', 'HPP92_022510' => 'vpl', 'Hund15989' => 'sun', 'Lalb_Chr19g0135421' => 'lal', 'Lalb_Chr22g0356381' => 'lal', 'Lalb_Chr22g0356391' => 'lal', 'Lj1A735T46' => 'lonja', 'Lj1C735T3' => 'lonja', 'Lj2g0006312' => 'lja', 'Lj3g0006045' => 'lja', 'Lj3g0021806' => 'lja', 'Lj3g0026770' => 'lja', 'Lju41E32T0' => 'lonja', 'Lsat_1_v5_gn_2_3941' => 'lsa', 'Lsat_1_v5_gn_3_137700' => 'lsa', 'Lsat_1_v5_gn_8_131741' => 'lsa', 'Manes.06G013500' => 'mes', 'Manes.13G150800' => 'mes', 'Manes.13G150900' => 'mes', 'Manes.13G150950' => 'mes', 'Mapoly0071s0092' => 'mpo', 'Mapoly0085s0037' => 'mpo', 'MBI02_g26441_MAGBIO' => 'mbi', 'MBI02_g35916_MAGBIO' => 'mbi', 'MBI02_g46699_MAGBIO' => 'mbi', 'MBI02_g48137_MAGBIO' => 'mbi', 'MBI04_g38761_MAGBIO' => 'mbi', 'MBI06_g08467_MAGBIO' => 'mbi', 'MCO02G305' => 'mco', 'MCO09G677' => 'mco', 'MD09G1092400' => 'mdo', 'MD09G1092500' => 'mdo', 'MD09G1092600' => 'mdo', 'MD17G1082400' => 'mdo', 'MD17G1082500' => 'mdo', 'MD17G1082600' => 'mdo', 'MD17G1082700' => 'mdo', 'Medtr2g090055' => 'mtr', 'Medtr2g090060' => 'mtr', 'Medtr2g090070' => 'mtr', 'Medtr4g046043' => 'mtr', 'Medtr4g065010' => 'mtr', 'MELO3C013524.2' => 'cme', 'Migut.H00150' => 'egut', 'Migut.H01027' => 'egut', 'Migut.H01028' => 'egut', 'MSTRG.14186' => 'ama', 'MSTRG.23988' => 'ama', 'Nitab4.5_0002260g0270' => 'nta', 'Nitab4.5_0003018g0040' => 'nta', 'Nitab4.5_0003069g0040' => 'nta', 'Nitab4.5_0003358g0010' => 'nta', 'Nitab4.5_0005244g0040' => 'nta', 'Nitab4.5_0006575g0040' => 'nta', 'Nitab4.5_0007732g0020' => 'nta', 'Nitab4.5_0008772g0020' => 'nta', 'Nitab4.5_0013575g0010' => 'nta', 'Nn1g03931' => 'nnu', 'Nn1g06728' => 'nnu', 'Nn1g06729' => 'nnu', 'Nn1g06730' => 'nnu', 'Oeu015786.1' => 'oeu', 'Oeu015814.1' => 'oeu', 'Oeu015815.1' => 'oeu', 'Oeu025510.1' => 'oeu', 'Oeu047331.1' => 'oeu', 'Os03g0582000' => 'osa', 'Os06g0128000' => 'osa', 'Os07g0530300' => 'osa', 'Peaxi162Scf00132g00081' => 'pax', 'Peaxi162Scf00132g00731' => 'pax', 'Peaxi162Scf00132g00822' => 'pax', 'Peaxi162Scf00423g00066' => 'pax', 'PGR042G1344' => 'pgr', 'PGR142G0421' => 'pgr', 'PGSC0003DMG400018320' => 'stu', 'PGSC0003DMG400018321' => 'stu', 'PGSC0003DMG400022306' => 'stu', 'Phvul.003G044600' => 'pvu', 'Phvul.005G107300' => 'pvu', 'Phvul.011G177800' => 'pvu', 'Potri.013G145600' => 'ptr', 'Potri.013G145700' => 'ptr', 'Potri.013G145800' => 'ptr', 'Potri.019G104700' => 'ptr', 'Pp3c2_17510' => 'ppa', 'Pp3c6_17280' => 'ppa', 'PRCOL_00005805' => 'pco', 'Prupe.3G232600' => 'ppe', 'Prupe.3G232700' => 'ppe', 'Psat5g270040' => 'psa', 'Psat5g270080' => 'psa', 'Psat7g197120' => 'psa', 'PSO017G7338' => 'pso', 'PSO339G1404' => 'pso', 'PSO339G1568' => 'pso', 'PSO384G0971' => 'pso', 'PSO384G2148' => 'pso', 'PSO541G0359' => 'pso', 'PSO675G2972' => 'pso', 'PSO675G3871' => 'pso', 'PSO675G3991' => 'pso', 'PSO675G6940' => 'pso', 'QL08p048209' => 'qlo', 'QL10p048419' => 'qlo', 'QL10p048424' => 'qlo', 'QL10p048442' => 'qlo', 'RcHm_v2.0_Chr2g0127151' => 'rch', 'RcHm_v2.0_Chr2g0162051' => 'rch', 'RcHm_v2.0_Chr2g0162061' => 'rch', 'Rhsim04G0021700' => 'rsi', 'Rhsim04G0065900' => 'rsi', 'Rhsim06G0150200' => 'rsi', 'Sabra13G0117300' => 'sbr', 'Sabra13G0117400' => 'sbr', 'SalBow1G0343' => 'sbo', 'SalBow1G1242' => 'sbo', 'SalBow1G8609' => 'sbo', 'SalBow4G1514' => 'sbo', 'SalBow6G0009' => 'sbo', 'SalBow7G0057' => 'sbo', 'SalBow7G2523' => 'sbo', 'SalBow7G4035' => 'sbo', 'SalBow7G4170' => 'sbo', 'Sc03g0002190' => 'sci', 'Sc06g0009180' => 'sci', 'Sc12g0002730' => 'sci', 'Sc12g0003980' => 'sci', 'Sed0009336' => 'sed', 'Sed0010350' => 'sed', 'Sed0013701' => 'sed', 'Sed0014445' => 'sed', 'Sed0018478' => 'sed', 'SEGI_15509' => 'sgi', 'SEGI_26592' => 'sgi', 'SGA_v2.0_scaffold130G34329' => 'sas', 'SGA_v2.0_scaffold135G34841' => 'sas', 'SGA_v2.0_scaffold159G37632' => 'sas', 'SGA_v2.0_scaffold3G01553' => 'sas', 'SMO351G0323' => 'smo', 'SMO356G0334' => 'smo', 'Solyc07g054420.2' => 'sly', 'Solyc07g054430.3' => 'sly', 'Solyc07g064840.3' => 'sly', 'Sopen07g028350' => 'spe', 'Sopen07g028360' => 'spe', 'Sopen07g033040' => 'spe', 'Sp3g34070' => 'spa', 'TAR627G0343' => 'tar', 'TAR627G0582' => 'tar', 'TAR629G1647' => 'tar', 'TAR629G2626' => 'tar', 'TAR629G2902' => 'tar', 'THA.LOC104811178' => 'tha', 'THA.LOC104814491' => 'tha', 'Thecc.02G172900' => 'tca', 'Thecc.02G173000' => 'tca', 'Thecc.02G173100' => 'tca', 'Thhalv10001991m.g' => 'esa', 'TPR.G21647' => 'tpr', 'TPR.G27095' => 'tpr', 'TPR.G27124' => 'tpr', 'TPR.G27126' => 'tpr', 'TPR.G40142' => 'tpr', 'TWI18G1087' => 'twi', 'TWI18G1093' => 'twi', 'TWI36G0604' => 'twi', 'unitig_62.g23188' => 'ugi', 'unitig_748.g8143' => 'ugi', 'vmacro09267' => 'vma', 'vmacro09268' => 'vma', 'vmacro12265' => 'vma', 'VMungo1080G0966' => 'vmu', 'VMungo1127G0255' => 'vmu', 'VMungo1215G0573' => 'vmu', 'Zm00001eb072880' => 'zma', 'Zm00001eb194600' => 'zma', 'Zm00001eb194610' => 'zma', 'Zm00001eb200630' => 'zma', 'Zm00001eb219580' => 'zma', 'Zm00001eb225500' => 'zma', 'Zm00001eb350110' => 'zma', 'Zm00001eb378790' => 'zma', 'Zm00001eb414500' => 'zma', 'Zm00001eb414510' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001969' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001969' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001969' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001969' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
<label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
<label>Source(s)</label>
<select class='form form-select' name='ontology_source_group' id='ontology_source_group'>
<?php foreach ($source_groups_information['available'] as $source_group_id) : ?>
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '335', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A09p58710' => 'bna', 'Aa31LG8G17650' => 'aar', 'Aa31LG9G15650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3187' => 'aag', 'Actinidia09897' => 'ach', 'Actinidia30484' => 'ach', 'Actinidia39300' => 'ach', 'Actinidia39674' => 'ach', 'Ah.07g207250' => 'amhyb', 'Ah.07g207260' => 'amhyb', 'Ah.13g068530' => 'amhyb', 'AL3G54000' => 'aly', 'AL3G54010' => 'aly', 'Aqoxy1G02707' => 'aox', 'Aqoxy1G02709' => 'aox', 'Aqoxy6G02660' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GKFN23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8K0CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKX56S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QE9TIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI4L3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4L4RH' => 'arhy', 'AT2G20830' => 'ath', 'ATR0693G323' => 'atr', 'ATR1001G005' => 'atr', 'Atru.chr6.3052' => 'acertr', 'Atru.chr6.3053' => 'acertr', 'Atru.chr6.3054' => 'acertr', 'AUR62003378' => 'cqu', 'AUR62019019' => 'cqu', 'AUR62025926' => 'cqu', 'AUR62029450' => 'cqu', 'AUR62029451' => 'cqu', 'AUR62029630' => 'cqu', 'BcaB08g34941' => 'bca', 'BcaC07g41194' => 'bca', 'BolC7t40460H' => 'bol', 'BolC8t51763H' => 'bol', 'BraA09t41257Z' => 'bra', 'C08p42010' => 'bna', 'CAN.G1310.15' => 'can', 'CAN.G1720.5' => 'can', 'CAN.G248.61' => 'can', 'CAN.G996.2' => 'can', 'CAN.G996.3' => 'can', 'CANSAT21G1059' => 'cansat', 'CANSAT64G2152' => 'cansat', 'CANSAT78G0375' => 'cansat', 'CARHR053830' => 'chi', 'CARHR111540' => 'chi', 'Carub.0003s3546' => 'cru', 'Ca_01532_v3' => 'car', 'Ca_01533_v3' => 'car', 'Ca_20693_v3' => 'car', 'Ca_30106_v3' => 'car', 'CBR_g20108' => 'cbr', 'Cc05_g06470' => 'ccan', 'Cc05_g06480' => 'ccan', 'Cc11_g01770' => 'ccan', 'Cc11_g01780' => 'ccan', 'CDE01G0485' => 'cde', 'CDE05G0969' => 'cde', 'CDE12G0465' => 'cde', 'Cfa003704' => 'cfa', 'Cfa012397' => 'cfa', 'Cfa014552' => 'cfa', 'Ciclev10001997m.g' => 'ccl', 'Ciclev10015950m.g' => 'ccl', 'Ciclev10017445m.g' => 'ccl', 'CiPaw.03G170700' => 'cil', 'CiPaw.04G123100' => 'cil', 'CiPaw.04G123200' => 'cil', 'CiPaw.16G086600' => 'cil', 'ClCG02G017400' => 'cla', 'COL.COLO4_13690' => 'col', 'COL.COLO4_13691' => 'col', 'COL.COLO4_13692' => 'col', 'Cpa.g.sc17.168' => 'cpa', 'Cre02.g075550' => 'cre', 'Cre06.g267000' => 'cre', 'CsaV3_6G012510' => 'csa', 'CsaV3_6G012530' => 'csa', 'CSS0015749' => 'camsi', 'CSS0025708' => 'camsi', 'CSS0039076' => 'camsi', 'CSS0050003' => 'camsi', 'DCAR_009732' => 'dca', 'DCAR_011200' => 'dca', 'DCAR_012986' => 'dca', 'Dinv15475' => 'din', 'Dinv15476' => 'din', 'Dinv23698' => 'din', 'Dinv23699' => 'din', 'Dinv23700' => 'din', 'Duzib132G0995' => 'dzi', 'Duzib248G0251' => 'dzi', 'Duzib248G0568' => 'dzi', 'ECA233G3782' => 'eca', 'ECA236G1367' => 'eca', 'EL10Ac3g05654' => 'bvu', 'EL10Ac8g18888' => 'bvu', 'Eucgr.A01786' => 'egr', 'Eucgr.K00932' => 'egr', 'Eucgr.K00933' => 'egr', 'Eucgr.K00935' => 'egr', 'Eucgr.K00936' => 'egr', 'FAN02G3777' => 'fan', 'FAN02G4205' => 'fan', 'FAN05G0495' => 'fan', 'FAN09G0082' => 'fan', 'FAN09G2888' => 'fan', 'FAN14G0313' => 'fan', 'FAN14G0686' => 'fan', 'FAN14G2141' => 'fan', 'FAN14G2345' => 'fan', 'FAN14G3823' => 'fan', 'FAN14G4464' => 'fan', 'FvH4_6g44860' => 'fve', 'FvH4_6g44870' => 'fve', 'Glyma.01G070400' => 'gma', 'Glyma.02G127600' => 'gma', 'Glyma.09G257600' => 'gma', 'Glyma.12G201700' => 'gma', 'Glyma.13G300500' => 'gma', 'Glyma.18G235000' => 'gma', 'Gohir.A03G159500' => 'ghi', 'Gohir.A03G159600' => 'ghi', 'Gohir.D02G182500' => 'ghi', 'Gohir.D02G182600' => 'ghi', 'Gohir.D02G182700' => 'ghi', 'Gorai.005G205100' => 'gra', 'GSVIVG01030573001' => 'vvi', 'GSVIVG01030574001' => 'vvi', 'GSVIVG01030575001' => 'vvi', 'HanXRQChr06g0167021' => 'han', 'HanXRQChr09g0274351' => 'han', 'HanXRQChr11g0350221' => 'han', 'HanXRQChr17g0533531' => 'han', 'HanXRQChr17g0533551' => 'han', 'HanXRQChr17g0533561' => 'han', 'Haze_13099' => 'cav', 'Haze_13100' => 'cav', 'Haze_15783' => 'cav', 'Hma1.2p1_0213F.1_g090530' => 'hma', 'Hma1.2p1_0213F.1_g090570' => 'hma', 'Hma1.2p1_0384F.1_g141150' => 'hma', 'Hma1.2p1_0565F.1_g179360' => 'hma', 'Hma1.2p1_0832F.1_g225700' => 'hma', 'Hma1.2p1_1820F.1_g304180' => 'hma', 'HPP92_010084' => 'vpl', 'HPP92_010093' => 'vpl', 'HPP92_022510' => 'vpl', 'Hund15989' => 'sun', 'Lalb_Chr19g0135421' => 'lal', 'Lalb_Chr22g0356381' => 'lal', 'Lalb_Chr22g0356391' => 'lal', 'Lj1A735T46' => 'lonja', 'Lj1C735T3' => 'lonja', 'Lj2g0006312' => 'lja', 'Lj3g0006045' => 'lja', 'Lj3g0021806' => 'lja', 'Lj3g0026770' => 'lja', 'Lju41E32T0' => 'lonja', 'Lsat_1_v5_gn_2_3941' => 'lsa', 'Lsat_1_v5_gn_3_137700' => 'lsa', 'Lsat_1_v5_gn_8_131741' => 'lsa', 'Manes.06G013500' => 'mes', 'Manes.13G150800' => 'mes', 'Manes.13G150900' => 'mes', 'Manes.13G150950' => 'mes', 'Mapoly0071s0092' => 'mpo', 'Mapoly0085s0037' => 'mpo', 'MBI02_g26441_MAGBIO' => 'mbi', 'MBI02_g35916_MAGBIO' => 'mbi', 'MBI02_g46699_MAGBIO' => 'mbi', 'MBI02_g48137_MAGBIO' => 'mbi', 'MBI04_g38761_MAGBIO' => 'mbi', 'MBI06_g08467_MAGBIO' => 'mbi', 'MCO02G305' => 'mco', 'MCO09G677' => 'mco', 'MD09G1092400' => 'mdo', 'MD09G1092500' => 'mdo', 'MD09G1092600' => 'mdo', 'MD17G1082400' => 'mdo', 'MD17G1082500' => 'mdo', 'MD17G1082600' => 'mdo', 'MD17G1082700' => 'mdo', 'Medtr2g090055' => 'mtr', 'Medtr2g090060' => 'mtr', 'Medtr2g090070' => 'mtr', 'Medtr4g046043' => 'mtr', 'Medtr4g065010' => 'mtr', 'MELO3C013524.2' => 'cme', 'Migut.H00150' => 'egut', 'Migut.H01027' => 'egut', 'Migut.H01028' => 'egut', 'MSTRG.14186' => 'ama', 'MSTRG.23988' => 'ama', 'Nitab4.5_0002260g0270' => 'nta', 'Nitab4.5_0003018g0040' => 'nta', 'Nitab4.5_0003069g0040' => 'nta', 'Nitab4.5_0003358g0010' => 'nta', 'Nitab4.5_0005244g0040' => 'nta', 'Nitab4.5_0006575g0040' => 'nta', 'Nitab4.5_0007732g0020' => 'nta', 'Nitab4.5_0008772g0020' => 'nta', 'Nitab4.5_0013575g0010' => 'nta', 'Nn1g03931' => 'nnu', 'Nn1g06728' => 'nnu', 'Nn1g06729' => 'nnu', 'Nn1g06730' => 'nnu', 'Oeu015786.1' => 'oeu', 'Oeu015814.1' => 'oeu', 'Oeu015815.1' => 'oeu', 'Oeu025510.1' => 'oeu', 'Oeu047331.1' => 'oeu', 'Os03g0582000' => 'osa', 'Os06g0128000' => 'osa', 'Os07g0530300' => 'osa', 'Peaxi162Scf00132g00081' => 'pax', 'Peaxi162Scf00132g00731' => 'pax', 'Peaxi162Scf00132g00822' => 'pax', 'Peaxi162Scf00423g00066' => 'pax', 'PGR042G1344' => 'pgr', 'PGR142G0421' => 'pgr', 'PGSC0003DMG400018320' => 'stu', 'PGSC0003DMG400018321' => 'stu', 'PGSC0003DMG400022306' => 'stu', 'Phvul.003G044600' => 'pvu', 'Phvul.005G107300' => 'pvu', 'Phvul.011G177800' => 'pvu', 'Potri.013G145600' => 'ptr', 'Potri.013G145700' => 'ptr', 'Potri.013G145800' => 'ptr', 'Potri.019G104700' => 'ptr', 'Pp3c2_17510' => 'ppa', 'Pp3c6_17280' => 'ppa', 'PRCOL_00005805' => 'pco', 'Prupe.3G232600' => 'ppe', 'Prupe.3G232700' => 'ppe', 'Psat5g270040' => 'psa', 'Psat5g270080' => 'psa', 'Psat7g197120' => 'psa', 'PSO017G7338' => 'pso', 'PSO339G1404' => 'pso', 'PSO339G1568' => 'pso', 'PSO384G0971' => 'pso', 'PSO384G2148' => 'pso', 'PSO541G0359' => 'pso', 'PSO675G2972' => 'pso', 'PSO675G3871' => 'pso', 'PSO675G3991' => 'pso', 'PSO675G6940' => 'pso', 'QL08p048209' => 'qlo', 'QL10p048419' => 'qlo', 'QL10p048424' => 'qlo', 'QL10p048442' => 'qlo', 'RcHm_v2.0_Chr2g0127151' => 'rch', 'RcHm_v2.0_Chr2g0162051' => 'rch', 'RcHm_v2.0_Chr2g0162061' => 'rch', 'Rhsim04G0021700' => 'rsi', 'Rhsim04G0065900' => 'rsi', 'Rhsim06G0150200' => 'rsi', 'Sabra13G0117300' => 'sbr', 'Sabra13G0117400' => 'sbr', 'SalBow1G0343' => 'sbo', 'SalBow1G1242' => 'sbo', 'SalBow1G8609' => 'sbo', 'SalBow4G1514' => 'sbo', 'SalBow6G0009' => 'sbo', 'SalBow7G0057' => 'sbo', 'SalBow7G2523' => 'sbo', 'SalBow7G4035' => 'sbo', 'SalBow7G4170' => 'sbo', 'Sc03g0002190' => 'sci', 'Sc06g0009180' => 'sci', 'Sc12g0002730' => 'sci', 'Sc12g0003980' => 'sci', 'Sed0009336' => 'sed', 'Sed0010350' => 'sed', 'Sed0013701' => 'sed', 'Sed0014445' => 'sed', 'Sed0018478' => 'sed', 'SEGI_15509' => 'sgi', 'SEGI_26592' => 'sgi', 'SGA_v2.0_scaffold130G34329' => 'sas', 'SGA_v2.0_scaffold135G34841' => 'sas', 'SGA_v2.0_scaffold159G37632' => 'sas', 'SGA_v2.0_scaffold3G01553' => 'sas', 'SMO351G0323' => 'smo', 'SMO356G0334' => 'smo', 'Solyc07g054420.2' => 'sly', 'Solyc07g054430.3' => 'sly', 'Solyc07g064840.3' => 'sly', 'Sopen07g028350' => 'spe', 'Sopen07g028360' => 'spe', 'Sopen07g033040' => 'spe', 'Sp3g34070' => 'spa', 'TAR627G0343' => 'tar', 'TAR627G0582' => 'tar', 'TAR629G1647' => 'tar', 'TAR629G2626' => 'tar', 'TAR629G2902' => 'tar', 'THA.LOC104811178' => 'tha', 'THA.LOC104814491' => 'tha', 'Thecc.02G172900' => 'tca', 'Thecc.02G173000' => 'tca', 'Thecc.02G173100' => 'tca', 'Thhalv10001991m.g' => 'esa', 'TPR.G21647' => 'tpr', 'TPR.G27095' => 'tpr', 'TPR.G27124' => 'tpr', 'TPR.G27126' => 'tpr', 'TPR.G40142' => 'tpr', 'TWI18G1087' => 'twi', 'TWI18G1093' => 'twi', 'TWI36G0604' => 'twi', 'unitig_62.g23188' => 'ugi', 'unitig_748.g8143' => 'ugi', 'vmacro09267' => 'vma', 'vmacro09268' => 'vma', 'vmacro12265' => 'vma', 'VMungo1080G0966' => 'vmu', 'VMungo1127G0255' => 'vmu', 'VMungo1215G0573' => 'vmu', 'Zm00001eb072880' => 'zma', 'Zm00001eb194600' => 'zma', 'Zm00001eb194610' => 'zma', 'Zm00001eb200630' => 'zma', 'Zm00001eb219580' => 'zma', 'Zm00001eb225500' => 'zma', 'Zm00001eb350110' => 'zma', 'Zm00001eb378790' => 'zma', 'Zm00001eb414500' => 'zma', 'Zm00001eb414510' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001969', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001969' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '335', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001969' ) ), 'genes' => array( 'A09p58710' => 'bna', 'Aa31LG8G17650' => 'aar', 'Aa31LG9G15650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3187' => 'aag', 'Actinidia09897' => 'ach', 'Actinidia30484' => 'ach', 'Actinidia39300' => 'ach', 'Actinidia39674' => 'ach', 'Ah.07g207250' => 'amhyb', 'Ah.07g207260' => 'amhyb', 'Ah.13g068530' => 'amhyb', 'AL3G54000' => 'aly', 'AL3G54010' => 'aly', 'Aqoxy1G02707' => 'aox', 'Aqoxy1G02709' => 'aox', 'Aqoxy6G02660' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GKFN23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8K0CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKX56S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QE9TIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI4L3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4L4RH' => 'arhy', 'AT2G20830' => 'ath', 'ATR0693G323' => 'atr', 'ATR1001G005' => 'atr', 'Atru.chr6.3052' => 'acertr', 'Atru.chr6.3053' => 'acertr', 'Atru.chr6.3054' => 'acertr', 'AUR62003378' => 'cqu', 'AUR62019019' => 'cqu', 'AUR62025926' => 'cqu', 'AUR62029450' => 'cqu', 'AUR62029451' => 'cqu', 'AUR62029630' => 'cqu', 'BcaB08g34941' => 'bca', 'BcaC07g41194' => 'bca', 'BolC7t40460H' => 'bol', 'BolC8t51763H' => 'bol', 'BraA09t41257Z' => 'bra', 'C08p42010' => 'bna', 'CAN.G1310.15' => 'can', 'CAN.G1720.5' => 'can', 'CAN.G248.61' => 'can', 'CAN.G996.2' => 'can', 'CAN.G996.3' => 'can', 'CANSAT21G1059' => 'cansat', 'CANSAT64G2152' => 'cansat', 'CANSAT78G0375' => 'cansat', 'CARHR053830' => 'chi', 'CARHR111540' => 'chi', 'Carub.0003s3546' => 'cru', 'Ca_01532_v3' => 'car', 'Ca_01533_v3' => 'car', 'Ca_20693_v3' => 'car', 'Ca_30106_v3' => 'car', 'CBR_g20108' => 'cbr', 'Cc05_g06470' => 'ccan', 'Cc05_g06480' => 'ccan', 'Cc11_g01770' => 'ccan', 'Cc11_g01780' => 'ccan', 'CDE01G0485' => 'cde', 'CDE05G0969' => 'cde', 'CDE12G0465' => 'cde', 'Cfa003704' => 'cfa', 'Cfa012397' => 'cfa', 'Cfa014552' => 'cfa', 'Ciclev10001997m.g' => 'ccl', 'Ciclev10015950m.g' => 'ccl', 'Ciclev10017445m.g' => 'ccl', 'CiPaw.03G170700' => 'cil', 'CiPaw.04G123100' => 'cil', 'CiPaw.04G123200' => 'cil', 'CiPaw.16G086600' => 'cil', 'ClCG02G017400' => 'cla', 'COL.COLO4_13690' => 'col', 'COL.COLO4_13691' => 'col', 'COL.COLO4_13692' => 'col', 'Cpa.g.sc17.168' => 'cpa', 'Cre02.g075550' => 'cre', 'Cre06.g267000' => 'cre', 'CsaV3_6G012510' => 'csa', 'CsaV3_6G012530' => 'csa', 'CSS0015749' => 'camsi', 'CSS0025708' => 'camsi', 'CSS0039076' => 'camsi', 'CSS0050003' => 'camsi', 'DCAR_009732' => 'dca', 'DCAR_011200' => 'dca', 'DCAR_012986' => 'dca', 'Dinv15475' => 'din', 'Dinv15476' => 'din', 'Dinv23698' => 'din', 'Dinv23699' => 'din', 'Dinv23700' => 'din', 'Duzib132G0995' => 'dzi', 'Duzib248G0251' => 'dzi', 'Duzib248G0568' => 'dzi', 'ECA233G3782' => 'eca', 'ECA236G1367' => 'eca', 'EL10Ac3g05654' => 'bvu', 'EL10Ac8g18888' => 'bvu', 'Eucgr.A01786' => 'egr', 'Eucgr.K00932' => 'egr', 'Eucgr.K00933' => 'egr', 'Eucgr.K00935' => 'egr', 'Eucgr.K00936' => 'egr', 'FAN02G3777' => 'fan', 'FAN02G4205' => 'fan', 'FAN05G0495' => 'fan', 'FAN09G0082' => 'fan', 'FAN09G2888' => 'fan', 'FAN14G0313' => 'fan', 'FAN14G0686' => 'fan', 'FAN14G2141' => 'fan', 'FAN14G2345' => 'fan', 'FAN14G3823' => 'fan', 'FAN14G4464' => 'fan', 'FvH4_6g44860' => 'fve', 'FvH4_6g44870' => 'fve', 'Glyma.01G070400' => 'gma', 'Glyma.02G127600' => 'gma', 'Glyma.09G257600' => 'gma', 'Glyma.12G201700' => 'gma', 'Glyma.13G300500' => 'gma', 'Glyma.18G235000' => 'gma', 'Gohir.A03G159500' => 'ghi', 'Gohir.A03G159600' => 'ghi', 'Gohir.D02G182500' => 'ghi', 'Gohir.D02G182600' => 'ghi', 'Gohir.D02G182700' => 'ghi', 'Gorai.005G205100' => 'gra', 'GSVIVG01030573001' => 'vvi', 'GSVIVG01030574001' => 'vvi', 'GSVIVG01030575001' => 'vvi', 'HanXRQChr06g0167021' => 'han', 'HanXRQChr09g0274351' => 'han', 'HanXRQChr11g0350221' => 'han', 'HanXRQChr17g0533531' => 'han', 'HanXRQChr17g0533551' => 'han', 'HanXRQChr17g0533561' => 'han', 'Haze_13099' => 'cav', 'Haze_13100' => 'cav', 'Haze_15783' => 'cav', 'Hma1.2p1_0213F.1_g090530' => 'hma', 'Hma1.2p1_0213F.1_g090570' => 'hma', 'Hma1.2p1_0384F.1_g141150' => 'hma', 'Hma1.2p1_0565F.1_g179360' => 'hma', 'Hma1.2p1_0832F.1_g225700' => 'hma', 'Hma1.2p1_1820F.1_g304180' => 'hma', 'HPP92_010084' => 'vpl', 'HPP92_010093' => 'vpl', 'HPP92_022510' => 'vpl', 'Hund15989' => 'sun', 'Lalb_Chr19g0135421' => 'lal', 'Lalb_Chr22g0356381' => 'lal', 'Lalb_Chr22g0356391' => 'lal', 'Lj1A735T46' => 'lonja', 'Lj1C735T3' => 'lonja', 'Lj2g0006312' => 'lja', 'Lj3g0006045' => 'lja', 'Lj3g0021806' => 'lja', 'Lj3g0026770' => 'lja', 'Lju41E32T0' => 'lonja', 'Lsat_1_v5_gn_2_3941' => 'lsa', 'Lsat_1_v5_gn_3_137700' => 'lsa', 'Lsat_1_v5_gn_8_131741' => 'lsa', 'Manes.06G013500' => 'mes', 'Manes.13G150800' => 'mes', 'Manes.13G150900' => 'mes', 'Manes.13G150950' => 'mes', 'Mapoly0071s0092' => 'mpo', 'Mapoly0085s0037' => 'mpo', 'MBI02_g26441_MAGBIO' => 'mbi', 'MBI02_g35916_MAGBIO' => 'mbi', 'MBI02_g46699_MAGBIO' => 'mbi', 'MBI02_g48137_MAGBIO' => 'mbi', 'MBI04_g38761_MAGBIO' => 'mbi', 'MBI06_g08467_MAGBIO' => 'mbi', 'MCO02G305' => 'mco', 'MCO09G677' => 'mco', 'MD09G1092400' => 'mdo', 'MD09G1092500' => 'mdo', 'MD09G1092600' => 'mdo', 'MD17G1082400' => 'mdo', 'MD17G1082500' => 'mdo', 'MD17G1082600' => 'mdo', 'MD17G1082700' => 'mdo', 'Medtr2g090055' => 'mtr', 'Medtr2g090060' => 'mtr', 'Medtr2g090070' => 'mtr', 'Medtr4g046043' => 'mtr', 'Medtr4g065010' => 'mtr', 'MELO3C013524.2' => 'cme', 'Migut.H00150' => 'egut', 'Migut.H01027' => 'egut', 'Migut.H01028' => 'egut', 'MSTRG.14186' => 'ama', 'MSTRG.23988' => 'ama', 'Nitab4.5_0002260g0270' => 'nta', 'Nitab4.5_0003018g0040' => 'nta', 'Nitab4.5_0003069g0040' => 'nta', 'Nitab4.5_0003358g0010' => 'nta', 'Nitab4.5_0005244g0040' => 'nta', 'Nitab4.5_0006575g0040' => 'nta', 'Nitab4.5_0007732g0020' => 'nta', 'Nitab4.5_0008772g0020' => 'nta', 'Nitab4.5_0013575g0010' => 'nta', 'Nn1g03931' => 'nnu', 'Nn1g06728' => 'nnu', 'Nn1g06729' => 'nnu', 'Nn1g06730' => 'nnu', 'Oeu015786.1' => 'oeu', 'Oeu015814.1' => 'oeu', 'Oeu015815.1' => 'oeu', 'Oeu025510.1' => 'oeu', 'Oeu047331.1' => 'oeu', 'Os03g0582000' => 'osa', 'Os06g0128000' => 'osa', 'Os07g0530300' => 'osa', 'Peaxi162Scf00132g00081' => 'pax', 'Peaxi162Scf00132g00731' => 'pax', 'Peaxi162Scf00132g00822' => 'pax', 'Peaxi162Scf00423g00066' => 'pax', 'PGR042G1344' => 'pgr', 'PGR142G0421' => 'pgr', 'PGSC0003DMG400018320' => 'stu', 'PGSC0003DMG400018321' => 'stu', 'PGSC0003DMG400022306' => 'stu', 'Phvul.003G044600' => 'pvu', 'Phvul.005G107300' => 'pvu', 'Phvul.011G177800' => 'pvu', 'Potri.013G145600' => 'ptr', 'Potri.013G145700' => 'ptr', 'Potri.013G145800' => 'ptr', 'Potri.019G104700' => 'ptr', 'Pp3c2_17510' => 'ppa', 'Pp3c6_17280' => 'ppa', 'PRCOL_00005805' => 'pco', 'Prupe.3G232600' => 'ppe', 'Prupe.3G232700' => 'ppe', 'Psat5g270040' => 'psa', 'Psat5g270080' => 'psa', 'Psat7g197120' => 'psa', 'PSO017G7338' => 'pso', 'PSO339G1404' => 'pso', 'PSO339G1568' => 'pso', 'PSO384G0971' => 'pso', 'PSO384G2148' => 'pso', 'PSO541G0359' => 'pso', 'PSO675G2972' => 'pso', 'PSO675G3871' => 'pso', 'PSO675G3991' => 'pso', 'PSO675G6940' => 'pso', 'QL08p048209' => 'qlo', 'QL10p048419' => 'qlo', 'QL10p048424' => 'qlo', 'QL10p048442' => 'qlo', 'RcHm_v2.0_Chr2g0127151' => 'rch', 'RcHm_v2.0_Chr2g0162051' => 'rch', 'RcHm_v2.0_Chr2g0162061' => 'rch', 'Rhsim04G0021700' => 'rsi', 'Rhsim04G0065900' => 'rsi', 'Rhsim06G0150200' => 'rsi', 'Sabra13G0117300' => 'sbr', 'Sabra13G0117400' => 'sbr', 'SalBow1G0343' => 'sbo', 'SalBow1G1242' => 'sbo', 'SalBow1G8609' => 'sbo', 'SalBow4G1514' => 'sbo', 'SalBow6G0009' => 'sbo', 'SalBow7G0057' => 'sbo', 'SalBow7G2523' => 'sbo', 'SalBow7G4035' => 'sbo', 'SalBow7G4170' => 'sbo', 'Sc03g0002190' => 'sci', 'Sc06g0009180' => 'sci', 'Sc12g0002730' => 'sci', 'Sc12g0003980' => 'sci', 'Sed0009336' => 'sed', 'Sed0010350' => 'sed', 'Sed0013701' => 'sed', 'Sed0014445' => 'sed', 'Sed0018478' => 'sed', 'SEGI_15509' => 'sgi', 'SEGI_26592' => 'sgi', 'SGA_v2.0_scaffold130G34329' => 'sas', 'SGA_v2.0_scaffold135G34841' => 'sas', 'SGA_v2.0_scaffold159G37632' => 'sas', 'SGA_v2.0_scaffold3G01553' => 'sas', 'SMO351G0323' => 'smo', 'SMO356G0334' => 'smo', 'Solyc07g054420.2' => 'sly', 'Solyc07g054430.3' => 'sly', 'Solyc07g064840.3' => 'sly', 'Sopen07g028350' => 'spe', 'Sopen07g028360' => 'spe', 'Sopen07g033040' => 'spe', 'Sp3g34070' => 'spa', 'TAR627G0343' => 'tar', 'TAR627G0582' => 'tar', 'TAR629G1647' => 'tar', 'TAR629G2626' => 'tar', 'TAR629G2902' => 'tar', 'THA.LOC104811178' => 'tha', 'THA.LOC104814491' => 'tha', 'Thecc.02G172900' => 'tca', 'Thecc.02G173000' => 'tca', 'Thecc.02G173100' => 'tca', 'Thhalv10001991m.g' => 'esa', 'TPR.G21647' => 'tpr', 'TPR.G27095' => 'tpr', 'TPR.G27124' => 'tpr', 'TPR.G27126' => 'tpr', 'TPR.G40142' => 'tpr', 'TWI18G1087' => 'twi', 'TWI18G1093' => 'twi', 'TWI36G0604' => 'twi', 'unitig_62.g23188' => 'ugi', 'unitig_748.g8143' => 'ugi', 'vmacro09267' => 'vma', 'vmacro09268' => 'vma', 'vmacro12265' => 'vma', 'VMungo1080G0966' => 'vmu', 'VMungo1127G0255' => 'vmu', 'VMungo1215G0573' => 'vmu', 'Zm00001eb072880' => 'zma', 'Zm00001eb194600' => 'zma', 'Zm00001eb194610' => 'zma', 'Zm00001eb200630' => 'zma', 'Zm00001eb219580' => 'zma', 'Zm00001eb225500' => 'zma', 'Zm00001eb350110' => 'zma', 'Zm00001eb378790' => 'zma', 'Zm00001eb414500' => 'zma', 'Zm00001eb414510' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001969' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001969' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001969' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001969' )
include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Notice (8): Trying to access array offset on value of type null [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '335', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A09p58710' => 'bna', 'Aa31LG8G17650' => 'aar', 'Aa31LG9G15650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3187' => 'aag', 'Actinidia09897' => 'ach', 'Actinidia30484' => 'ach', 'Actinidia39300' => 'ach', 'Actinidia39674' => 'ach', 'Ah.07g207250' => 'amhyb', 'Ah.07g207260' => 'amhyb', 'Ah.13g068530' => 'amhyb', 'AL3G54000' => 'aly', 'AL3G54010' => 'aly', 'Aqoxy1G02707' => 'aox', 'Aqoxy1G02709' => 'aox', 'Aqoxy6G02660' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GKFN23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8K0CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKX56S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QE9TIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI4L3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4L4RH' => 'arhy', 'AT2G20830' => 'ath', 'ATR0693G323' => 'atr', 'ATR1001G005' => 'atr', 'Atru.chr6.3052' => 'acertr', 'Atru.chr6.3053' => 'acertr', 'Atru.chr6.3054' => 'acertr', 'AUR62003378' => 'cqu', 'AUR62019019' => 'cqu', 'AUR62025926' => 'cqu', 'AUR62029450' => 'cqu', 'AUR62029451' => 'cqu', 'AUR62029630' => 'cqu', 'BcaB08g34941' => 'bca', 'BcaC07g41194' => 'bca', 'BolC7t40460H' => 'bol', 'BolC8t51763H' => 'bol', 'BraA09t41257Z' => 'bra', 'C08p42010' => 'bna', 'CAN.G1310.15' => 'can', 'CAN.G1720.5' => 'can', 'CAN.G248.61' => 'can', 'CAN.G996.2' => 'can', 'CAN.G996.3' => 'can', 'CANSAT21G1059' => 'cansat', 'CANSAT64G2152' => 'cansat', 'CANSAT78G0375' => 'cansat', 'CARHR053830' => 'chi', 'CARHR111540' => 'chi', 'Carub.0003s3546' => 'cru', 'Ca_01532_v3' => 'car', 'Ca_01533_v3' => 'car', 'Ca_20693_v3' => 'car', 'Ca_30106_v3' => 'car', 'CBR_g20108' => 'cbr', 'Cc05_g06470' => 'ccan', 'Cc05_g06480' => 'ccan', 'Cc11_g01770' => 'ccan', 'Cc11_g01780' => 'ccan', 'CDE01G0485' => 'cde', 'CDE05G0969' => 'cde', 'CDE12G0465' => 'cde', 'Cfa003704' => 'cfa', 'Cfa012397' => 'cfa', 'Cfa014552' => 'cfa', 'Ciclev10001997m.g' => 'ccl', 'Ciclev10015950m.g' => 'ccl', 'Ciclev10017445m.g' => 'ccl', 'CiPaw.03G170700' => 'cil', 'CiPaw.04G123100' => 'cil', 'CiPaw.04G123200' => 'cil', 'CiPaw.16G086600' => 'cil', 'ClCG02G017400' => 'cla', 'COL.COLO4_13690' => 'col', 'COL.COLO4_13691' => 'col', 'COL.COLO4_13692' => 'col', 'Cpa.g.sc17.168' => 'cpa', 'Cre02.g075550' => 'cre', 'Cre06.g267000' => 'cre', 'CsaV3_6G012510' => 'csa', 'CsaV3_6G012530' => 'csa', 'CSS0015749' => 'camsi', 'CSS0025708' => 'camsi', 'CSS0039076' => 'camsi', 'CSS0050003' => 'camsi', 'DCAR_009732' => 'dca', 'DCAR_011200' => 'dca', 'DCAR_012986' => 'dca', 'Dinv15475' => 'din', 'Dinv15476' => 'din', 'Dinv23698' => 'din', 'Dinv23699' => 'din', 'Dinv23700' => 'din', 'Duzib132G0995' => 'dzi', 'Duzib248G0251' => 'dzi', 'Duzib248G0568' => 'dzi', 'ECA233G3782' => 'eca', 'ECA236G1367' => 'eca', 'EL10Ac3g05654' => 'bvu', 'EL10Ac8g18888' => 'bvu', 'Eucgr.A01786' => 'egr', 'Eucgr.K00932' => 'egr', 'Eucgr.K00933' => 'egr', 'Eucgr.K00935' => 'egr', 'Eucgr.K00936' => 'egr', 'FAN02G3777' => 'fan', 'FAN02G4205' => 'fan', 'FAN05G0495' => 'fan', 'FAN09G0082' => 'fan', 'FAN09G2888' => 'fan', 'FAN14G0313' => 'fan', 'FAN14G0686' => 'fan', 'FAN14G2141' => 'fan', 'FAN14G2345' => 'fan', 'FAN14G3823' => 'fan', 'FAN14G4464' => 'fan', 'FvH4_6g44860' => 'fve', 'FvH4_6g44870' => 'fve', 'Glyma.01G070400' => 'gma', 'Glyma.02G127600' => 'gma', 'Glyma.09G257600' => 'gma', 'Glyma.12G201700' => 'gma', 'Glyma.13G300500' => 'gma', 'Glyma.18G235000' => 'gma', 'Gohir.A03G159500' => 'ghi', 'Gohir.A03G159600' => 'ghi', 'Gohir.D02G182500' => 'ghi', 'Gohir.D02G182600' => 'ghi', 'Gohir.D02G182700' => 'ghi', 'Gorai.005G205100' => 'gra', 'GSVIVG01030573001' => 'vvi', 'GSVIVG01030574001' => 'vvi', 'GSVIVG01030575001' => 'vvi', 'HanXRQChr06g0167021' => 'han', 'HanXRQChr09g0274351' => 'han', 'HanXRQChr11g0350221' => 'han', 'HanXRQChr17g0533531' => 'han', 'HanXRQChr17g0533551' => 'han', 'HanXRQChr17g0533561' => 'han', 'Haze_13099' => 'cav', 'Haze_13100' => 'cav', 'Haze_15783' => 'cav', 'Hma1.2p1_0213F.1_g090530' => 'hma', 'Hma1.2p1_0213F.1_g090570' => 'hma', 'Hma1.2p1_0384F.1_g141150' => 'hma', 'Hma1.2p1_0565F.1_g179360' => 'hma', 'Hma1.2p1_0832F.1_g225700' => 'hma', 'Hma1.2p1_1820F.1_g304180' => 'hma', 'HPP92_010084' => 'vpl', 'HPP92_010093' => 'vpl', 'HPP92_022510' => 'vpl', 'Hund15989' => 'sun', 'Lalb_Chr19g0135421' => 'lal', 'Lalb_Chr22g0356381' => 'lal', 'Lalb_Chr22g0356391' => 'lal', 'Lj1A735T46' => 'lonja', 'Lj1C735T3' => 'lonja', 'Lj2g0006312' => 'lja', 'Lj3g0006045' => 'lja', 'Lj3g0021806' => 'lja', 'Lj3g0026770' => 'lja', 'Lju41E32T0' => 'lonja', 'Lsat_1_v5_gn_2_3941' => 'lsa', 'Lsat_1_v5_gn_3_137700' => 'lsa', 'Lsat_1_v5_gn_8_131741' => 'lsa', 'Manes.06G013500' => 'mes', 'Manes.13G150800' => 'mes', 'Manes.13G150900' => 'mes', 'Manes.13G150950' => 'mes', 'Mapoly0071s0092' => 'mpo', 'Mapoly0085s0037' => 'mpo', 'MBI02_g26441_MAGBIO' => 'mbi', 'MBI02_g35916_MAGBIO' => 'mbi', 'MBI02_g46699_MAGBIO' => 'mbi', 'MBI02_g48137_MAGBIO' => 'mbi', 'MBI04_g38761_MAGBIO' => 'mbi', 'MBI06_g08467_MAGBIO' => 'mbi', 'MCO02G305' => 'mco', 'MCO09G677' => 'mco', 'MD09G1092400' => 'mdo', 'MD09G1092500' => 'mdo', 'MD09G1092600' => 'mdo', 'MD17G1082400' => 'mdo', 'MD17G1082500' => 'mdo', 'MD17G1082600' => 'mdo', 'MD17G1082700' => 'mdo', 'Medtr2g090055' => 'mtr', 'Medtr2g090060' => 'mtr', 'Medtr2g090070' => 'mtr', 'Medtr4g046043' => 'mtr', 'Medtr4g065010' => 'mtr', 'MELO3C013524.2' => 'cme', 'Migut.H00150' => 'egut', 'Migut.H01027' => 'egut', 'Migut.H01028' => 'egut', 'MSTRG.14186' => 'ama', 'MSTRG.23988' => 'ama', 'Nitab4.5_0002260g0270' => 'nta', 'Nitab4.5_0003018g0040' => 'nta', 'Nitab4.5_0003069g0040' => 'nta', 'Nitab4.5_0003358g0010' => 'nta', 'Nitab4.5_0005244g0040' => 'nta', 'Nitab4.5_0006575g0040' => 'nta', 'Nitab4.5_0007732g0020' => 'nta', 'Nitab4.5_0008772g0020' => 'nta', 'Nitab4.5_0013575g0010' => 'nta', 'Nn1g03931' => 'nnu', 'Nn1g06728' => 'nnu', 'Nn1g06729' => 'nnu', 'Nn1g06730' => 'nnu', 'Oeu015786.1' => 'oeu', 'Oeu015814.1' => 'oeu', 'Oeu015815.1' => 'oeu', 'Oeu025510.1' => 'oeu', 'Oeu047331.1' => 'oeu', 'Os03g0582000' => 'osa', 'Os06g0128000' => 'osa', 'Os07g0530300' => 'osa', 'Peaxi162Scf00132g00081' => 'pax', 'Peaxi162Scf00132g00731' => 'pax', 'Peaxi162Scf00132g00822' => 'pax', 'Peaxi162Scf00423g00066' => 'pax', 'PGR042G1344' => 'pgr', 'PGR142G0421' => 'pgr', 'PGSC0003DMG400018320' => 'stu', 'PGSC0003DMG400018321' => 'stu', 'PGSC0003DMG400022306' => 'stu', 'Phvul.003G044600' => 'pvu', 'Phvul.005G107300' => 'pvu', 'Phvul.011G177800' => 'pvu', 'Potri.013G145600' => 'ptr', 'Potri.013G145700' => 'ptr', 'Potri.013G145800' => 'ptr', 'Potri.019G104700' => 'ptr', 'Pp3c2_17510' => 'ppa', 'Pp3c6_17280' => 'ppa', 'PRCOL_00005805' => 'pco', 'Prupe.3G232600' => 'ppe', 'Prupe.3G232700' => 'ppe', 'Psat5g270040' => 'psa', 'Psat5g270080' => 'psa', 'Psat7g197120' => 'psa', 'PSO017G7338' => 'pso', 'PSO339G1404' => 'pso', 'PSO339G1568' => 'pso', 'PSO384G0971' => 'pso', 'PSO384G2148' => 'pso', 'PSO541G0359' => 'pso', 'PSO675G2972' => 'pso', 'PSO675G3871' => 'pso', 'PSO675G3991' => 'pso', 'PSO675G6940' => 'pso', 'QL08p048209' => 'qlo', 'QL10p048419' => 'qlo', 'QL10p048424' => 'qlo', 'QL10p048442' => 'qlo', 'RcHm_v2.0_Chr2g0127151' => 'rch', 'RcHm_v2.0_Chr2g0162051' => 'rch', 'RcHm_v2.0_Chr2g0162061' => 'rch', 'Rhsim04G0021700' => 'rsi', 'Rhsim04G0065900' => 'rsi', 'Rhsim06G0150200' => 'rsi', 'Sabra13G0117300' => 'sbr', 'Sabra13G0117400' => 'sbr', 'SalBow1G0343' => 'sbo', 'SalBow1G1242' => 'sbo', 'SalBow1G8609' => 'sbo', 'SalBow4G1514' => 'sbo', 'SalBow6G0009' => 'sbo', 'SalBow7G0057' => 'sbo', 'SalBow7G2523' => 'sbo', 'SalBow7G4035' => 'sbo', 'SalBow7G4170' => 'sbo', 'Sc03g0002190' => 'sci', 'Sc06g0009180' => 'sci', 'Sc12g0002730' => 'sci', 'Sc12g0003980' => 'sci', 'Sed0009336' => 'sed', 'Sed0010350' => 'sed', 'Sed0013701' => 'sed', 'Sed0014445' => 'sed', 'Sed0018478' => 'sed', 'SEGI_15509' => 'sgi', 'SEGI_26592' => 'sgi', 'SGA_v2.0_scaffold130G34329' => 'sas', 'SGA_v2.0_scaffold135G34841' => 'sas', 'SGA_v2.0_scaffold159G37632' => 'sas', 'SGA_v2.0_scaffold3G01553' => 'sas', 'SMO351G0323' => 'smo', 'SMO356G0334' => 'smo', 'Solyc07g054420.2' => 'sly', 'Solyc07g054430.3' => 'sly', 'Solyc07g064840.3' => 'sly', 'Sopen07g028350' => 'spe', 'Sopen07g028360' => 'spe', 'Sopen07g033040' => 'spe', 'Sp3g34070' => 'spa', 'TAR627G0343' => 'tar', 'TAR627G0582' => 'tar', 'TAR629G1647' => 'tar', 'TAR629G2626' => 'tar', 'TAR629G2902' => 'tar', 'THA.LOC104811178' => 'tha', 'THA.LOC104814491' => 'tha', 'Thecc.02G172900' => 'tca', 'Thecc.02G173000' => 'tca', 'Thecc.02G173100' => 'tca', 'Thhalv10001991m.g' => 'esa', 'TPR.G21647' => 'tpr', 'TPR.G27095' => 'tpr', 'TPR.G27124' => 'tpr', 'TPR.G27126' => 'tpr', 'TPR.G40142' => 'tpr', 'TWI18G1087' => 'twi', 'TWI18G1093' => 'twi', 'TWI36G0604' => 'twi', 'unitig_62.g23188' => 'ugi', 'unitig_748.g8143' => 'ugi', 'vmacro09267' => 'vma', 'vmacro09268' => 'vma', 'vmacro12265' => 'vma', 'VMungo1080G0966' => 'vmu', 'VMungo1127G0255' => 'vmu', 'VMungo1215G0573' => 'vmu', 'Zm00001eb072880' => 'zma', 'Zm00001eb194600' => 'zma', 'Zm00001eb194610' => 'zma', 'Zm00001eb200630' => 'zma', 'Zm00001eb219580' => 'zma', 'Zm00001eb225500' => 'zma', 'Zm00001eb350110' => 'zma', 'Zm00001eb378790' => 'zma', 'Zm00001eb414500' => 'zma', 'Zm00001eb414510' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001969', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001969' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '335', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001969' ) ), 'genes' => array( 'A09p58710' => 'bna', 'Aa31LG8G17650' => 'aar', 'Aa31LG9G15650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3187' => 'aag', 'Actinidia09897' => 'ach', 'Actinidia30484' => 'ach', 'Actinidia39300' => 'ach', 'Actinidia39674' => 'ach', 'Ah.07g207250' => 'amhyb', 'Ah.07g207260' => 'amhyb', 'Ah.13g068530' => 'amhyb', 'AL3G54000' => 'aly', 'AL3G54010' => 'aly', 'Aqoxy1G02707' => 'aox', 'Aqoxy1G02709' => 'aox', 'Aqoxy6G02660' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GKFN23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8K0CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKX56S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QE9TIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI4L3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4L4RH' => 'arhy', 'AT2G20830' => 'ath', 'ATR0693G323' => 'atr', 'ATR1001G005' => 'atr', 'Atru.chr6.3052' => 'acertr', 'Atru.chr6.3053' => 'acertr', 'Atru.chr6.3054' => 'acertr', 'AUR62003378' => 'cqu', 'AUR62019019' => 'cqu', 'AUR62025926' => 'cqu', 'AUR62029450' => 'cqu', 'AUR62029451' => 'cqu', 'AUR62029630' => 'cqu', 'BcaB08g34941' => 'bca', 'BcaC07g41194' => 'bca', 'BolC7t40460H' => 'bol', 'BolC8t51763H' => 'bol', 'BraA09t41257Z' => 'bra', 'C08p42010' => 'bna', 'CAN.G1310.15' => 'can', 'CAN.G1720.5' => 'can', 'CAN.G248.61' => 'can', 'CAN.G996.2' => 'can', 'CAN.G996.3' => 'can', 'CANSAT21G1059' => 'cansat', 'CANSAT64G2152' => 'cansat', 'CANSAT78G0375' => 'cansat', 'CARHR053830' => 'chi', 'CARHR111540' => 'chi', 'Carub.0003s3546' => 'cru', 'Ca_01532_v3' => 'car', 'Ca_01533_v3' => 'car', 'Ca_20693_v3' => 'car', 'Ca_30106_v3' => 'car', 'CBR_g20108' => 'cbr', 'Cc05_g06470' => 'ccan', 'Cc05_g06480' => 'ccan', 'Cc11_g01770' => 'ccan', 'Cc11_g01780' => 'ccan', 'CDE01G0485' => 'cde', 'CDE05G0969' => 'cde', 'CDE12G0465' => 'cde', 'Cfa003704' => 'cfa', 'Cfa012397' => 'cfa', 'Cfa014552' => 'cfa', 'Ciclev10001997m.g' => 'ccl', 'Ciclev10015950m.g' => 'ccl', 'Ciclev10017445m.g' => 'ccl', 'CiPaw.03G170700' => 'cil', 'CiPaw.04G123100' => 'cil', 'CiPaw.04G123200' => 'cil', 'CiPaw.16G086600' => 'cil', 'ClCG02G017400' => 'cla', 'COL.COLO4_13690' => 'col', 'COL.COLO4_13691' => 'col', 'COL.COLO4_13692' => 'col', 'Cpa.g.sc17.168' => 'cpa', 'Cre02.g075550' => 'cre', 'Cre06.g267000' => 'cre', 'CsaV3_6G012510' => 'csa', 'CsaV3_6G012530' => 'csa', 'CSS0015749' => 'camsi', 'CSS0025708' => 'camsi', 'CSS0039076' => 'camsi', 'CSS0050003' => 'camsi', 'DCAR_009732' => 'dca', 'DCAR_011200' => 'dca', 'DCAR_012986' => 'dca', 'Dinv15475' => 'din', 'Dinv15476' => 'din', 'Dinv23698' => 'din', 'Dinv23699' => 'din', 'Dinv23700' => 'din', 'Duzib132G0995' => 'dzi', 'Duzib248G0251' => 'dzi', 'Duzib248G0568' => 'dzi', 'ECA233G3782' => 'eca', 'ECA236G1367' => 'eca', 'EL10Ac3g05654' => 'bvu', 'EL10Ac8g18888' => 'bvu', 'Eucgr.A01786' => 'egr', 'Eucgr.K00932' => 'egr', 'Eucgr.K00933' => 'egr', 'Eucgr.K00935' => 'egr', 'Eucgr.K00936' => 'egr', 'FAN02G3777' => 'fan', 'FAN02G4205' => 'fan', 'FAN05G0495' => 'fan', 'FAN09G0082' => 'fan', 'FAN09G2888' => 'fan', 'FAN14G0313' => 'fan', 'FAN14G0686' => 'fan', 'FAN14G2141' => 'fan', 'FAN14G2345' => 'fan', 'FAN14G3823' => 'fan', 'FAN14G4464' => 'fan', 'FvH4_6g44860' => 'fve', 'FvH4_6g44870' => 'fve', 'Glyma.01G070400' => 'gma', 'Glyma.02G127600' => 'gma', 'Glyma.09G257600' => 'gma', 'Glyma.12G201700' => 'gma', 'Glyma.13G300500' => 'gma', 'Glyma.18G235000' => 'gma', 'Gohir.A03G159500' => 'ghi', 'Gohir.A03G159600' => 'ghi', 'Gohir.D02G182500' => 'ghi', 'Gohir.D02G182600' => 'ghi', 'Gohir.D02G182700' => 'ghi', 'Gorai.005G205100' => 'gra', 'GSVIVG01030573001' => 'vvi', 'GSVIVG01030574001' => 'vvi', 'GSVIVG01030575001' => 'vvi', 'HanXRQChr06g0167021' => 'han', 'HanXRQChr09g0274351' => 'han', 'HanXRQChr11g0350221' => 'han', 'HanXRQChr17g0533531' => 'han', 'HanXRQChr17g0533551' => 'han', 'HanXRQChr17g0533561' => 'han', 'Haze_13099' => 'cav', 'Haze_13100' => 'cav', 'Haze_15783' => 'cav', 'Hma1.2p1_0213F.1_g090530' => 'hma', 'Hma1.2p1_0213F.1_g090570' => 'hma', 'Hma1.2p1_0384F.1_g141150' => 'hma', 'Hma1.2p1_0565F.1_g179360' => 'hma', 'Hma1.2p1_0832F.1_g225700' => 'hma', 'Hma1.2p1_1820F.1_g304180' => 'hma', 'HPP92_010084' => 'vpl', 'HPP92_010093' => 'vpl', 'HPP92_022510' => 'vpl', 'Hund15989' => 'sun', 'Lalb_Chr19g0135421' => 'lal', 'Lalb_Chr22g0356381' => 'lal', 'Lalb_Chr22g0356391' => 'lal', 'Lj1A735T46' => 'lonja', 'Lj1C735T3' => 'lonja', 'Lj2g0006312' => 'lja', 'Lj3g0006045' => 'lja', 'Lj3g0021806' => 'lja', 'Lj3g0026770' => 'lja', 'Lju41E32T0' => 'lonja', 'Lsat_1_v5_gn_2_3941' => 'lsa', 'Lsat_1_v5_gn_3_137700' => 'lsa', 'Lsat_1_v5_gn_8_131741' => 'lsa', 'Manes.06G013500' => 'mes', 'Manes.13G150800' => 'mes', 'Manes.13G150900' => 'mes', 'Manes.13G150950' => 'mes', 'Mapoly0071s0092' => 'mpo', 'Mapoly0085s0037' => 'mpo', 'MBI02_g26441_MAGBIO' => 'mbi', 'MBI02_g35916_MAGBIO' => 'mbi', 'MBI02_g46699_MAGBIO' => 'mbi', 'MBI02_g48137_MAGBIO' => 'mbi', 'MBI04_g38761_MAGBIO' => 'mbi', 'MBI06_g08467_MAGBIO' => 'mbi', 'MCO02G305' => 'mco', 'MCO09G677' => 'mco', 'MD09G1092400' => 'mdo', 'MD09G1092500' => 'mdo', 'MD09G1092600' => 'mdo', 'MD17G1082400' => 'mdo', 'MD17G1082500' => 'mdo', 'MD17G1082600' => 'mdo', 'MD17G1082700' => 'mdo', 'Medtr2g090055' => 'mtr', 'Medtr2g090060' => 'mtr', 'Medtr2g090070' => 'mtr', 'Medtr4g046043' => 'mtr', 'Medtr4g065010' => 'mtr', 'MELO3C013524.2' => 'cme', 'Migut.H00150' => 'egut', 'Migut.H01027' => 'egut', 'Migut.H01028' => 'egut', 'MSTRG.14186' => 'ama', 'MSTRG.23988' => 'ama', 'Nitab4.5_0002260g0270' => 'nta', 'Nitab4.5_0003018g0040' => 'nta', 'Nitab4.5_0003069g0040' => 'nta', 'Nitab4.5_0003358g0010' => 'nta', 'Nitab4.5_0005244g0040' => 'nta', 'Nitab4.5_0006575g0040' => 'nta', 'Nitab4.5_0007732g0020' => 'nta', 'Nitab4.5_0008772g0020' => 'nta', 'Nitab4.5_0013575g0010' => 'nta', 'Nn1g03931' => 'nnu', 'Nn1g06728' => 'nnu', 'Nn1g06729' => 'nnu', 'Nn1g06730' => 'nnu', 'Oeu015786.1' => 'oeu', 'Oeu015814.1' => 'oeu', 'Oeu015815.1' => 'oeu', 'Oeu025510.1' => 'oeu', 'Oeu047331.1' => 'oeu', 'Os03g0582000' => 'osa', 'Os06g0128000' => 'osa', 'Os07g0530300' => 'osa', 'Peaxi162Scf00132g00081' => 'pax', 'Peaxi162Scf00132g00731' => 'pax', 'Peaxi162Scf00132g00822' => 'pax', 'Peaxi162Scf00423g00066' => 'pax', 'PGR042G1344' => 'pgr', 'PGR142G0421' => 'pgr', 'PGSC0003DMG400018320' => 'stu', 'PGSC0003DMG400018321' => 'stu', 'PGSC0003DMG400022306' => 'stu', 'Phvul.003G044600' => 'pvu', 'Phvul.005G107300' => 'pvu', 'Phvul.011G177800' => 'pvu', 'Potri.013G145600' => 'ptr', 'Potri.013G145700' => 'ptr', 'Potri.013G145800' => 'ptr', 'Potri.019G104700' => 'ptr', 'Pp3c2_17510' => 'ppa', 'Pp3c6_17280' => 'ppa', 'PRCOL_00005805' => 'pco', 'Prupe.3G232600' => 'ppe', 'Prupe.3G232700' => 'ppe', 'Psat5g270040' => 'psa', 'Psat5g270080' => 'psa', 'Psat7g197120' => 'psa', 'PSO017G7338' => 'pso', 'PSO339G1404' => 'pso', 'PSO339G1568' => 'pso', 'PSO384G0971' => 'pso', 'PSO384G2148' => 'pso', 'PSO541G0359' => 'pso', 'PSO675G2972' => 'pso', 'PSO675G3871' => 'pso', 'PSO675G3991' => 'pso', 'PSO675G6940' => 'pso', 'QL08p048209' => 'qlo', 'QL10p048419' => 'qlo', 'QL10p048424' => 'qlo', 'QL10p048442' => 'qlo', 'RcHm_v2.0_Chr2g0127151' => 'rch', 'RcHm_v2.0_Chr2g0162051' => 'rch', 'RcHm_v2.0_Chr2g0162061' => 'rch', 'Rhsim04G0021700' => 'rsi', 'Rhsim04G0065900' => 'rsi', 'Rhsim06G0150200' => 'rsi', 'Sabra13G0117300' => 'sbr', 'Sabra13G0117400' => 'sbr', 'SalBow1G0343' => 'sbo', 'SalBow1G1242' => 'sbo', 'SalBow1G8609' => 'sbo', 'SalBow4G1514' => 'sbo', 'SalBow6G0009' => 'sbo', 'SalBow7G0057' => 'sbo', 'SalBow7G2523' => 'sbo', 'SalBow7G4035' => 'sbo', 'SalBow7G4170' => 'sbo', 'Sc03g0002190' => 'sci', 'Sc06g0009180' => 'sci', 'Sc12g0002730' => 'sci', 'Sc12g0003980' => 'sci', 'Sed0009336' => 'sed', 'Sed0010350' => 'sed', 'Sed0013701' => 'sed', 'Sed0014445' => 'sed', 'Sed0018478' => 'sed', 'SEGI_15509' => 'sgi', 'SEGI_26592' => 'sgi', 'SGA_v2.0_scaffold130G34329' => 'sas', 'SGA_v2.0_scaffold135G34841' => 'sas', 'SGA_v2.0_scaffold159G37632' => 'sas', 'SGA_v2.0_scaffold3G01553' => 'sas', 'SMO351G0323' => 'smo', 'SMO356G0334' => 'smo', 'Solyc07g054420.2' => 'sly', 'Solyc07g054430.3' => 'sly', 'Solyc07g064840.3' => 'sly', 'Sopen07g028350' => 'spe', 'Sopen07g028360' => 'spe', 'Sopen07g033040' => 'spe', 'Sp3g34070' => 'spa', 'TAR627G0343' => 'tar', 'TAR627G0582' => 'tar', 'TAR629G1647' => 'tar', 'TAR629G2626' => 'tar', 'TAR629G2902' => 'tar', 'THA.LOC104811178' => 'tha', 'THA.LOC104814491' => 'tha', 'Thecc.02G172900' => 'tca', 'Thecc.02G173000' => 'tca', 'Thecc.02G173100' => 'tca', 'Thhalv10001991m.g' => 'esa', 'TPR.G21647' => 'tpr', 'TPR.G27095' => 'tpr', 'TPR.G27124' => 'tpr', 'TPR.G27126' => 'tpr', 'TPR.G40142' => 'tpr', 'TWI18G1087' => 'twi', 'TWI18G1093' => 'twi', 'TWI36G0604' => 'twi', 'unitig_62.g23188' => 'ugi', 'unitig_748.g8143' => 'ugi', 'vmacro09267' => 'vma', 'vmacro09268' => 'vma', 'vmacro12265' => 'vma', 'VMungo1080G0966' => 'vmu', 'VMungo1127G0255' => 'vmu', 'VMungo1215G0573' => 'vmu', 'Zm00001eb072880' => 'zma', 'Zm00001eb194600' => 'zma', 'Zm00001eb194610' => 'zma', 'Zm00001eb200630' => 'zma', 'Zm00001eb219580' => 'zma', 'Zm00001eb225500' => 'zma', 'Zm00001eb350110' => 'zma', 'Zm00001eb378790' => 'zma', 'Zm00001eb414500' => 'zma', 'Zm00001eb414510' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001969' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001969' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001969' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001969' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151
Warning (2): Invalid argument supplied for foreach() [APP/View/Tools/similarity_heatmap.ctp, line 77]Code Context <label>Source(s)</label> <select class='form form-select' name='ontology_source_group' id='ontology_source_group'> <?php foreach ($source_groups_information['available'] as $source_group_id) : ?> $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Tools/similarity_heatmap.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D001969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '335', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'gene_selection' => array( 'parameters' => array( (int) 0 => array( [maximum depth reached] ) ), 'genes' => array( 'A09p58710' => 'bna', 'Aa31LG8G17650' => 'aar', 'Aa31LG9G15650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3187' => 'aag', 'Actinidia09897' => 'ach', 'Actinidia30484' => 'ach', 'Actinidia39300' => 'ach', 'Actinidia39674' => 'ach', 'Ah.07g207250' => 'amhyb', 'Ah.07g207260' => 'amhyb', 'Ah.13g068530' => 'amhyb', 'AL3G54000' => 'aly', 'AL3G54010' => 'aly', 'Aqoxy1G02707' => 'aox', 'Aqoxy1G02709' => 'aox', 'Aqoxy6G02660' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GKFN23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8K0CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKX56S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QE9TIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI4L3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4L4RH' => 'arhy', 'AT2G20830' => 'ath', 'ATR0693G323' => 'atr', 'ATR1001G005' => 'atr', 'Atru.chr6.3052' => 'acertr', 'Atru.chr6.3053' => 'acertr', 'Atru.chr6.3054' => 'acertr', 'AUR62003378' => 'cqu', 'AUR62019019' => 'cqu', 'AUR62025926' => 'cqu', 'AUR62029450' => 'cqu', 'AUR62029451' => 'cqu', 'AUR62029630' => 'cqu', 'BcaB08g34941' => 'bca', 'BcaC07g41194' => 'bca', 'BolC7t40460H' => 'bol', 'BolC8t51763H' => 'bol', 'BraA09t41257Z' => 'bra', 'C08p42010' => 'bna', 'CAN.G1310.15' => 'can', 'CAN.G1720.5' => 'can', 'CAN.G248.61' => 'can', 'CAN.G996.2' => 'can', 'CAN.G996.3' => 'can', 'CANSAT21G1059' => 'cansat', 'CANSAT64G2152' => 'cansat', 'CANSAT78G0375' => 'cansat', 'CARHR053830' => 'chi', 'CARHR111540' => 'chi', 'Carub.0003s3546' => 'cru', 'Ca_01532_v3' => 'car', 'Ca_01533_v3' => 'car', 'Ca_20693_v3' => 'car', 'Ca_30106_v3' => 'car', 'CBR_g20108' => 'cbr', 'Cc05_g06470' => 'ccan', 'Cc05_g06480' => 'ccan', 'Cc11_g01770' => 'ccan', 'Cc11_g01780' => 'ccan', 'CDE01G0485' => 'cde', 'CDE05G0969' => 'cde', 'CDE12G0465' => 'cde', 'Cfa003704' => 'cfa', 'Cfa012397' => 'cfa', 'Cfa014552' => 'cfa', 'Ciclev10001997m.g' => 'ccl', 'Ciclev10015950m.g' => 'ccl', 'Ciclev10017445m.g' => 'ccl', 'CiPaw.03G170700' => 'cil', 'CiPaw.04G123100' => 'cil', 'CiPaw.04G123200' => 'cil', 'CiPaw.16G086600' => 'cil', 'ClCG02G017400' => 'cla', 'COL.COLO4_13690' => 'col', 'COL.COLO4_13691' => 'col', 'COL.COLO4_13692' => 'col', 'Cpa.g.sc17.168' => 'cpa', 'Cre02.g075550' => 'cre', 'Cre06.g267000' => 'cre', 'CsaV3_6G012510' => 'csa', 'CsaV3_6G012530' => 'csa', 'CSS0015749' => 'camsi', 'CSS0025708' => 'camsi', 'CSS0039076' => 'camsi', 'CSS0050003' => 'camsi', 'DCAR_009732' => 'dca', 'DCAR_011200' => 'dca', 'DCAR_012986' => 'dca', 'Dinv15475' => 'din', 'Dinv15476' => 'din', 'Dinv23698' => 'din', 'Dinv23699' => 'din', 'Dinv23700' => 'din', 'Duzib132G0995' => 'dzi', 'Duzib248G0251' => 'dzi', 'Duzib248G0568' => 'dzi', 'ECA233G3782' => 'eca', 'ECA236G1367' => 'eca', 'EL10Ac3g05654' => 'bvu', 'EL10Ac8g18888' => 'bvu', 'Eucgr.A01786' => 'egr', 'Eucgr.K00932' => 'egr', 'Eucgr.K00933' => 'egr', 'Eucgr.K00935' => 'egr', 'Eucgr.K00936' => 'egr', 'FAN02G3777' => 'fan', 'FAN02G4205' => 'fan', 'FAN05G0495' => 'fan', 'FAN09G0082' => 'fan', 'FAN09G2888' => 'fan', 'FAN14G0313' => 'fan', 'FAN14G0686' => 'fan', 'FAN14G2141' => 'fan', 'FAN14G2345' => 'fan', 'FAN14G3823' => 'fan', 'FAN14G4464' => 'fan', 'FvH4_6g44860' => 'fve', 'FvH4_6g44870' => 'fve', 'Glyma.01G070400' => 'gma', 'Glyma.02G127600' => 'gma', 'Glyma.09G257600' => 'gma', 'Glyma.12G201700' => 'gma', 'Glyma.13G300500' => 'gma', 'Glyma.18G235000' => 'gma', 'Gohir.A03G159500' => 'ghi', 'Gohir.A03G159600' => 'ghi', 'Gohir.D02G182500' => 'ghi', 'Gohir.D02G182600' => 'ghi', 'Gohir.D02G182700' => 'ghi', 'Gorai.005G205100' => 'gra', 'GSVIVG01030573001' => 'vvi', 'GSVIVG01030574001' => 'vvi', 'GSVIVG01030575001' => 'vvi', 'HanXRQChr06g0167021' => 'han', 'HanXRQChr09g0274351' => 'han', 'HanXRQChr11g0350221' => 'han', 'HanXRQChr17g0533531' => 'han', 'HanXRQChr17g0533551' => 'han', 'HanXRQChr17g0533561' => 'han', 'Haze_13099' => 'cav', 'Haze_13100' => 'cav', 'Haze_15783' => 'cav', 'Hma1.2p1_0213F.1_g090530' => 'hma', 'Hma1.2p1_0213F.1_g090570' => 'hma', 'Hma1.2p1_0384F.1_g141150' => 'hma', 'Hma1.2p1_0565F.1_g179360' => 'hma', 'Hma1.2p1_0832F.1_g225700' => 'hma', 'Hma1.2p1_1820F.1_g304180' => 'hma', 'HPP92_010084' => 'vpl', 'HPP92_010093' => 'vpl', 'HPP92_022510' => 'vpl', 'Hund15989' => 'sun', 'Lalb_Chr19g0135421' => 'lal', 'Lalb_Chr22g0356381' => 'lal', 'Lalb_Chr22g0356391' => 'lal', 'Lj1A735T46' => 'lonja', 'Lj1C735T3' => 'lonja', 'Lj2g0006312' => 'lja', 'Lj3g0006045' => 'lja', 'Lj3g0021806' => 'lja', 'Lj3g0026770' => 'lja', 'Lju41E32T0' => 'lonja', 'Lsat_1_v5_gn_2_3941' => 'lsa', 'Lsat_1_v5_gn_3_137700' => 'lsa', 'Lsat_1_v5_gn_8_131741' => 'lsa', 'Manes.06G013500' => 'mes', 'Manes.13G150800' => 'mes', 'Manes.13G150900' => 'mes', 'Manes.13G150950' => 'mes', 'Mapoly0071s0092' => 'mpo', 'Mapoly0085s0037' => 'mpo', 'MBI02_g26441_MAGBIO' => 'mbi', 'MBI02_g35916_MAGBIO' => 'mbi', 'MBI02_g46699_MAGBIO' => 'mbi', 'MBI02_g48137_MAGBIO' => 'mbi', 'MBI04_g38761_MAGBIO' => 'mbi', 'MBI06_g08467_MAGBIO' => 'mbi', 'MCO02G305' => 'mco', 'MCO09G677' => 'mco', 'MD09G1092400' => 'mdo', 'MD09G1092500' => 'mdo', 'MD09G1092600' => 'mdo', 'MD17G1082400' => 'mdo', 'MD17G1082500' => 'mdo', 'MD17G1082600' => 'mdo', 'MD17G1082700' => 'mdo', 'Medtr2g090055' => 'mtr', 'Medtr2g090060' => 'mtr', 'Medtr2g090070' => 'mtr', 'Medtr4g046043' => 'mtr', 'Medtr4g065010' => 'mtr', 'MELO3C013524.2' => 'cme', 'Migut.H00150' => 'egut', 'Migut.H01027' => 'egut', 'Migut.H01028' => 'egut', 'MSTRG.14186' => 'ama', 'MSTRG.23988' => 'ama', 'Nitab4.5_0002260g0270' => 'nta', 'Nitab4.5_0003018g0040' => 'nta', 'Nitab4.5_0003069g0040' => 'nta', 'Nitab4.5_0003358g0010' => 'nta', 'Nitab4.5_0005244g0040' => 'nta', 'Nitab4.5_0006575g0040' => 'nta', 'Nitab4.5_0007732g0020' => 'nta', 'Nitab4.5_0008772g0020' => 'nta', 'Nitab4.5_0013575g0010' => 'nta', 'Nn1g03931' => 'nnu', 'Nn1g06728' => 'nnu', 'Nn1g06729' => 'nnu', 'Nn1g06730' => 'nnu', 'Oeu015786.1' => 'oeu', 'Oeu015814.1' => 'oeu', 'Oeu015815.1' => 'oeu', 'Oeu025510.1' => 'oeu', 'Oeu047331.1' => 'oeu', 'Os03g0582000' => 'osa', 'Os06g0128000' => 'osa', 'Os07g0530300' => 'osa', 'Peaxi162Scf00132g00081' => 'pax', 'Peaxi162Scf00132g00731' => 'pax', 'Peaxi162Scf00132g00822' => 'pax', 'Peaxi162Scf00423g00066' => 'pax', 'PGR042G1344' => 'pgr', 'PGR142G0421' => 'pgr', 'PGSC0003DMG400018320' => 'stu', 'PGSC0003DMG400018321' => 'stu', 'PGSC0003DMG400022306' => 'stu', 'Phvul.003G044600' => 'pvu', 'Phvul.005G107300' => 'pvu', 'Phvul.011G177800' => 'pvu', 'Potri.013G145600' => 'ptr', 'Potri.013G145700' => 'ptr', 'Potri.013G145800' => 'ptr', 'Potri.019G104700' => 'ptr', 'Pp3c2_17510' => 'ppa', 'Pp3c6_17280' => 'ppa', 'PRCOL_00005805' => 'pco', 'Prupe.3G232600' => 'ppe', 'Prupe.3G232700' => 'ppe', 'Psat5g270040' => 'psa', 'Psat5g270080' => 'psa', 'Psat7g197120' => 'psa', 'PSO017G7338' => 'pso', 'PSO339G1404' => 'pso', 'PSO339G1568' => 'pso', 'PSO384G0971' => 'pso', 'PSO384G2148' => 'pso', 'PSO541G0359' => 'pso', 'PSO675G2972' => 'pso', 'PSO675G3871' => 'pso', 'PSO675G3991' => 'pso', 'PSO675G6940' => 'pso', 'QL08p048209' => 'qlo', 'QL10p048419' => 'qlo', 'QL10p048424' => 'qlo', 'QL10p048442' => 'qlo', 'RcHm_v2.0_Chr2g0127151' => 'rch', 'RcHm_v2.0_Chr2g0162051' => 'rch', 'RcHm_v2.0_Chr2g0162061' => 'rch', 'Rhsim04G0021700' => 'rsi', 'Rhsim04G0065900' => 'rsi', 'Rhsim06G0150200' => 'rsi', 'Sabra13G0117300' => 'sbr', 'Sabra13G0117400' => 'sbr', 'SalBow1G0343' => 'sbo', 'SalBow1G1242' => 'sbo', 'SalBow1G8609' => 'sbo', 'SalBow4G1514' => 'sbo', 'SalBow6G0009' => 'sbo', 'SalBow7G0057' => 'sbo', 'SalBow7G2523' => 'sbo', 'SalBow7G4035' => 'sbo', 'SalBow7G4170' => 'sbo', 'Sc03g0002190' => 'sci', 'Sc06g0009180' => 'sci', 'Sc12g0002730' => 'sci', 'Sc12g0003980' => 'sci', 'Sed0009336' => 'sed', 'Sed0010350' => 'sed', 'Sed0013701' => 'sed', 'Sed0014445' => 'sed', 'Sed0018478' => 'sed', 'SEGI_15509' => 'sgi', 'SEGI_26592' => 'sgi', 'SGA_v2.0_scaffold130G34329' => 'sas', 'SGA_v2.0_scaffold135G34841' => 'sas', 'SGA_v2.0_scaffold159G37632' => 'sas', 'SGA_v2.0_scaffold3G01553' => 'sas', 'SMO351G0323' => 'smo', 'SMO356G0334' => 'smo', 'Solyc07g054420.2' => 'sly', 'Solyc07g054430.3' => 'sly', 'Solyc07g064840.3' => 'sly', 'Sopen07g028350' => 'spe', 'Sopen07g028360' => 'spe', 'Sopen07g033040' => 'spe', 'Sp3g34070' => 'spa', 'TAR627G0343' => 'tar', 'TAR627G0582' => 'tar', 'TAR629G1647' => 'tar', 'TAR629G2626' => 'tar', 'TAR629G2902' => 'tar', 'THA.LOC104811178' => 'tha', 'THA.LOC104814491' => 'tha', 'Thecc.02G172900' => 'tca', 'Thecc.02G173000' => 'tca', 'Thecc.02G173100' => 'tca', 'Thhalv10001991m.g' => 'esa', 'TPR.G21647' => 'tpr', 'TPR.G27095' => 'tpr', 'TPR.G27124' => 'tpr', 'TPR.G27126' => 'tpr', 'TPR.G40142' => 'tpr', 'TWI18G1087' => 'twi', 'TWI18G1093' => 'twi', 'TWI36G0604' => 'twi', 'unitig_62.g23188' => 'ugi', 'unitig_748.g8143' => 'ugi', 'vmacro09267' => 'vma', 'vmacro09268' => 'vma', 'vmacro12265' => 'vma', 'VMungo1080G0966' => 'vmu', 'VMungo1127G0255' => 'vmu', 'VMungo1215G0573' => 'vmu', 'Zm00001eb072880' => 'zma', 'Zm00001eb194600' => 'zma', 'Zm00001eb194610' => 'zma', 'Zm00001eb200630' => 'zma', 'Zm00001eb219580' => 'zma', 'Zm00001eb225500' => 'zma', 'Zm00001eb350110' => 'zma', 'Zm00001eb378790' => 'zma', 'Zm00001eb414500' => 'zma', 'Zm00001eb414510' => 'zma' ) ), 'data_type' => 'gene_family', 'gf_id' => 'HOM05D001969', 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D001969' ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'subfamily_family_types' => array( (int) 0 => 'ORTHOFAM' ), 'parental_family_types' => array( (int) 0 => 'HOMFAM' ), 'gene_family_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'allowed_data_types' => array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) ) $sidebar_info = array( 'gf_id' => 'HOM05D001969', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '335', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $gene_selection = array( 'parameters' => array( (int) 0 => array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001969' ) ), 'genes' => array( 'A09p58710' => 'bna', 'Aa31LG8G17650' => 'aar', 'Aa31LG9G15650' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3187' => 'aag', 'Actinidia09897' => 'ach', 'Actinidia30484' => 'ach', 'Actinidia39300' => 'ach', 'Actinidia39674' => 'ach', 'Ah.07g207250' => 'amhyb', 'Ah.07g207260' => 'amhyb', 'Ah.13g068530' => 'amhyb', 'AL3G54000' => 'aly', 'AL3G54010' => 'aly', 'Aqoxy1G02707' => 'aox', 'Aqoxy1G02709' => 'aox', 'Aqoxy6G02660' => 'aox', 'arahy.Tifrunner.gnm1.ann1.GKFN23' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K8K0CL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PKX56S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QE9TIU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VI4L3R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y4L4RH' => 'arhy', 'AT2G20830' => 'ath', 'ATR0693G323' => 'atr', 'ATR1001G005' => 'atr', 'Atru.chr6.3052' => 'acertr', 'Atru.chr6.3053' => 'acertr', 'Atru.chr6.3054' => 'acertr', 'AUR62003378' => 'cqu', 'AUR62019019' => 'cqu', 'AUR62025926' => 'cqu', 'AUR62029450' => 'cqu', 'AUR62029451' => 'cqu', 'AUR62029630' => 'cqu', 'BcaB08g34941' => 'bca', 'BcaC07g41194' => 'bca', 'BolC7t40460H' => 'bol', 'BolC8t51763H' => 'bol', 'BraA09t41257Z' => 'bra', 'C08p42010' => 'bna', 'CAN.G1310.15' => 'can', 'CAN.G1720.5' => 'can', 'CAN.G248.61' => 'can', 'CAN.G996.2' => 'can', 'CAN.G996.3' => 'can', 'CANSAT21G1059' => 'cansat', 'CANSAT64G2152' => 'cansat', 'CANSAT78G0375' => 'cansat', 'CARHR053830' => 'chi', 'CARHR111540' => 'chi', 'Carub.0003s3546' => 'cru', 'Ca_01532_v3' => 'car', 'Ca_01533_v3' => 'car', 'Ca_20693_v3' => 'car', 'Ca_30106_v3' => 'car', 'CBR_g20108' => 'cbr', 'Cc05_g06470' => 'ccan', 'Cc05_g06480' => 'ccan', 'Cc11_g01770' => 'ccan', 'Cc11_g01780' => 'ccan', 'CDE01G0485' => 'cde', 'CDE05G0969' => 'cde', 'CDE12G0465' => 'cde', 'Cfa003704' => 'cfa', 'Cfa012397' => 'cfa', 'Cfa014552' => 'cfa', 'Ciclev10001997m.g' => 'ccl', 'Ciclev10015950m.g' => 'ccl', 'Ciclev10017445m.g' => 'ccl', 'CiPaw.03G170700' => 'cil', 'CiPaw.04G123100' => 'cil', 'CiPaw.04G123200' => 'cil', 'CiPaw.16G086600' => 'cil', 'ClCG02G017400' => 'cla', 'COL.COLO4_13690' => 'col', 'COL.COLO4_13691' => 'col', 'COL.COLO4_13692' => 'col', 'Cpa.g.sc17.168' => 'cpa', 'Cre02.g075550' => 'cre', 'Cre06.g267000' => 'cre', 'CsaV3_6G012510' => 'csa', 'CsaV3_6G012530' => 'csa', 'CSS0015749' => 'camsi', 'CSS0025708' => 'camsi', 'CSS0039076' => 'camsi', 'CSS0050003' => 'camsi', 'DCAR_009732' => 'dca', 'DCAR_011200' => 'dca', 'DCAR_012986' => 'dca', 'Dinv15475' => 'din', 'Dinv15476' => 'din', 'Dinv23698' => 'din', 'Dinv23699' => 'din', 'Dinv23700' => 'din', 'Duzib132G0995' => 'dzi', 'Duzib248G0251' => 'dzi', 'Duzib248G0568' => 'dzi', 'ECA233G3782' => 'eca', 'ECA236G1367' => 'eca', 'EL10Ac3g05654' => 'bvu', 'EL10Ac8g18888' => 'bvu', 'Eucgr.A01786' => 'egr', 'Eucgr.K00932' => 'egr', 'Eucgr.K00933' => 'egr', 'Eucgr.K00935' => 'egr', 'Eucgr.K00936' => 'egr', 'FAN02G3777' => 'fan', 'FAN02G4205' => 'fan', 'FAN05G0495' => 'fan', 'FAN09G0082' => 'fan', 'FAN09G2888' => 'fan', 'FAN14G0313' => 'fan', 'FAN14G0686' => 'fan', 'FAN14G2141' => 'fan', 'FAN14G2345' => 'fan', 'FAN14G3823' => 'fan', 'FAN14G4464' => 'fan', 'FvH4_6g44860' => 'fve', 'FvH4_6g44870' => 'fve', 'Glyma.01G070400' => 'gma', 'Glyma.02G127600' => 'gma', 'Glyma.09G257600' => 'gma', 'Glyma.12G201700' => 'gma', 'Glyma.13G300500' => 'gma', 'Glyma.18G235000' => 'gma', 'Gohir.A03G159500' => 'ghi', 'Gohir.A03G159600' => 'ghi', 'Gohir.D02G182500' => 'ghi', 'Gohir.D02G182600' => 'ghi', 'Gohir.D02G182700' => 'ghi', 'Gorai.005G205100' => 'gra', 'GSVIVG01030573001' => 'vvi', 'GSVIVG01030574001' => 'vvi', 'GSVIVG01030575001' => 'vvi', 'HanXRQChr06g0167021' => 'han', 'HanXRQChr09g0274351' => 'han', 'HanXRQChr11g0350221' => 'han', 'HanXRQChr17g0533531' => 'han', 'HanXRQChr17g0533551' => 'han', 'HanXRQChr17g0533561' => 'han', 'Haze_13099' => 'cav', 'Haze_13100' => 'cav', 'Haze_15783' => 'cav', 'Hma1.2p1_0213F.1_g090530' => 'hma', 'Hma1.2p1_0213F.1_g090570' => 'hma', 'Hma1.2p1_0384F.1_g141150' => 'hma', 'Hma1.2p1_0565F.1_g179360' => 'hma', 'Hma1.2p1_0832F.1_g225700' => 'hma', 'Hma1.2p1_1820F.1_g304180' => 'hma', 'HPP92_010084' => 'vpl', 'HPP92_010093' => 'vpl', 'HPP92_022510' => 'vpl', 'Hund15989' => 'sun', 'Lalb_Chr19g0135421' => 'lal', 'Lalb_Chr22g0356381' => 'lal', 'Lalb_Chr22g0356391' => 'lal', 'Lj1A735T46' => 'lonja', 'Lj1C735T3' => 'lonja', 'Lj2g0006312' => 'lja', 'Lj3g0006045' => 'lja', 'Lj3g0021806' => 'lja', 'Lj3g0026770' => 'lja', 'Lju41E32T0' => 'lonja', 'Lsat_1_v5_gn_2_3941' => 'lsa', 'Lsat_1_v5_gn_3_137700' => 'lsa', 'Lsat_1_v5_gn_8_131741' => 'lsa', 'Manes.06G013500' => 'mes', 'Manes.13G150800' => 'mes', 'Manes.13G150900' => 'mes', 'Manes.13G150950' => 'mes', 'Mapoly0071s0092' => 'mpo', 'Mapoly0085s0037' => 'mpo', 'MBI02_g26441_MAGBIO' => 'mbi', 'MBI02_g35916_MAGBIO' => 'mbi', 'MBI02_g46699_MAGBIO' => 'mbi', 'MBI02_g48137_MAGBIO' => 'mbi', 'MBI04_g38761_MAGBIO' => 'mbi', 'MBI06_g08467_MAGBIO' => 'mbi', 'MCO02G305' => 'mco', 'MCO09G677' => 'mco', 'MD09G1092400' => 'mdo', 'MD09G1092500' => 'mdo', 'MD09G1092600' => 'mdo', 'MD17G1082400' => 'mdo', 'MD17G1082500' => 'mdo', 'MD17G1082600' => 'mdo', 'MD17G1082700' => 'mdo', 'Medtr2g090055' => 'mtr', 'Medtr2g090060' => 'mtr', 'Medtr2g090070' => 'mtr', 'Medtr4g046043' => 'mtr', 'Medtr4g065010' => 'mtr', 'MELO3C013524.2' => 'cme', 'Migut.H00150' => 'egut', 'Migut.H01027' => 'egut', 'Migut.H01028' => 'egut', 'MSTRG.14186' => 'ama', 'MSTRG.23988' => 'ama', 'Nitab4.5_0002260g0270' => 'nta', 'Nitab4.5_0003018g0040' => 'nta', 'Nitab4.5_0003069g0040' => 'nta', 'Nitab4.5_0003358g0010' => 'nta', 'Nitab4.5_0005244g0040' => 'nta', 'Nitab4.5_0006575g0040' => 'nta', 'Nitab4.5_0007732g0020' => 'nta', 'Nitab4.5_0008772g0020' => 'nta', 'Nitab4.5_0013575g0010' => 'nta', 'Nn1g03931' => 'nnu', 'Nn1g06728' => 'nnu', 'Nn1g06729' => 'nnu', 'Nn1g06730' => 'nnu', 'Oeu015786.1' => 'oeu', 'Oeu015814.1' => 'oeu', 'Oeu015815.1' => 'oeu', 'Oeu025510.1' => 'oeu', 'Oeu047331.1' => 'oeu', 'Os03g0582000' => 'osa', 'Os06g0128000' => 'osa', 'Os07g0530300' => 'osa', 'Peaxi162Scf00132g00081' => 'pax', 'Peaxi162Scf00132g00731' => 'pax', 'Peaxi162Scf00132g00822' => 'pax', 'Peaxi162Scf00423g00066' => 'pax', 'PGR042G1344' => 'pgr', 'PGR142G0421' => 'pgr', 'PGSC0003DMG400018320' => 'stu', 'PGSC0003DMG400018321' => 'stu', 'PGSC0003DMG400022306' => 'stu', 'Phvul.003G044600' => 'pvu', 'Phvul.005G107300' => 'pvu', 'Phvul.011G177800' => 'pvu', 'Potri.013G145600' => 'ptr', 'Potri.013G145700' => 'ptr', 'Potri.013G145800' => 'ptr', 'Potri.019G104700' => 'ptr', 'Pp3c2_17510' => 'ppa', 'Pp3c6_17280' => 'ppa', 'PRCOL_00005805' => 'pco', 'Prupe.3G232600' => 'ppe', 'Prupe.3G232700' => 'ppe', 'Psat5g270040' => 'psa', 'Psat5g270080' => 'psa', 'Psat7g197120' => 'psa', 'PSO017G7338' => 'pso', 'PSO339G1404' => 'pso', 'PSO339G1568' => 'pso', 'PSO384G0971' => 'pso', 'PSO384G2148' => 'pso', 'PSO541G0359' => 'pso', 'PSO675G2972' => 'pso', 'PSO675G3871' => 'pso', 'PSO675G3991' => 'pso', 'PSO675G6940' => 'pso', 'QL08p048209' => 'qlo', 'QL10p048419' => 'qlo', 'QL10p048424' => 'qlo', 'QL10p048442' => 'qlo', 'RcHm_v2.0_Chr2g0127151' => 'rch', 'RcHm_v2.0_Chr2g0162051' => 'rch', 'RcHm_v2.0_Chr2g0162061' => 'rch', 'Rhsim04G0021700' => 'rsi', 'Rhsim04G0065900' => 'rsi', 'Rhsim06G0150200' => 'rsi', 'Sabra13G0117300' => 'sbr', 'Sabra13G0117400' => 'sbr', 'SalBow1G0343' => 'sbo', 'SalBow1G1242' => 'sbo', 'SalBow1G8609' => 'sbo', 'SalBow4G1514' => 'sbo', 'SalBow6G0009' => 'sbo', 'SalBow7G0057' => 'sbo', 'SalBow7G2523' => 'sbo', 'SalBow7G4035' => 'sbo', 'SalBow7G4170' => 'sbo', 'Sc03g0002190' => 'sci', 'Sc06g0009180' => 'sci', 'Sc12g0002730' => 'sci', 'Sc12g0003980' => 'sci', 'Sed0009336' => 'sed', 'Sed0010350' => 'sed', 'Sed0013701' => 'sed', 'Sed0014445' => 'sed', 'Sed0018478' => 'sed', 'SEGI_15509' => 'sgi', 'SEGI_26592' => 'sgi', 'SGA_v2.0_scaffold130G34329' => 'sas', 'SGA_v2.0_scaffold135G34841' => 'sas', 'SGA_v2.0_scaffold159G37632' => 'sas', 'SGA_v2.0_scaffold3G01553' => 'sas', 'SMO351G0323' => 'smo', 'SMO356G0334' => 'smo', 'Solyc07g054420.2' => 'sly', 'Solyc07g054430.3' => 'sly', 'Solyc07g064840.3' => 'sly', 'Sopen07g028350' => 'spe', 'Sopen07g028360' => 'spe', 'Sopen07g033040' => 'spe', 'Sp3g34070' => 'spa', 'TAR627G0343' => 'tar', 'TAR627G0582' => 'tar', 'TAR629G1647' => 'tar', 'TAR629G2626' => 'tar', 'TAR629G2902' => 'tar', 'THA.LOC104811178' => 'tha', 'THA.LOC104814491' => 'tha', 'Thecc.02G172900' => 'tca', 'Thecc.02G173000' => 'tca', 'Thecc.02G173100' => 'tca', 'Thhalv10001991m.g' => 'esa', 'TPR.G21647' => 'tpr', 'TPR.G27095' => 'tpr', 'TPR.G27124' => 'tpr', 'TPR.G27126' => 'tpr', 'TPR.G40142' => 'tpr', 'TWI18G1087' => 'twi', 'TWI18G1093' => 'twi', 'TWI36G0604' => 'twi', 'unitig_62.g23188' => 'ugi', 'unitig_748.g8143' => 'ugi', 'vmacro09267' => 'vma', 'vmacro09268' => 'vma', 'vmacro12265' => 'vma', 'VMungo1080G0966' => 'vmu', 'VMungo1127G0255' => 'vmu', 'VMungo1215G0573' => 'vmu', 'Zm00001eb072880' => 'zma', 'Zm00001eb194600' => 'zma', 'Zm00001eb194610' => 'zma', 'Zm00001eb200630' => 'zma', 'Zm00001eb219580' => 'zma', 'Zm00001eb225500' => 'zma', 'Zm00001eb350110' => 'zma', 'Zm00001eb378790' => 'zma', 'Zm00001eb414500' => 'zma', 'Zm00001eb414510' => 'zma' ) ) $data_type = 'gene_family' $gf_id = 'HOM05D001969' $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D001969' ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $subfamily_family_types = array( (int) 0 => 'ORTHOFAM' ) $parental_family_types = array( (int) 0 => 'HOMFAM' ) $gene_family_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $allowed_data_types = array( 'GO' => 'Gene Ontology', 'INTERPRO' => 'InterPro', 'GENE_FAMILY' => 'Gene Family' ) $data_identifier_value = 'HOM05D001969' $data_identifier_description = '' $adt_title = 'Gene Family' $adt = 'GENE_FAMILY' $is_selected = 'selected='selected'' $parameter = array( 'data_type' => 'GENE_FAMILY', 'data_value' => 'HOM05D001969' )include - APP/View/Tools/similarity_heatmap.ctp, line 77 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::render() - CORE/Cake/View/View.php, line 473 Controller::render() - CORE/Cake/Controller/Controller.php, line 963 Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 200 Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 167 [main] - APP/webroot/index.php, line 151